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_
_2AX_3EQ_4AX_LINKS
(in
LinkageType
)
__init__()
(in
AtomAtomPairFeaturesCAP
)
__instance_size__
(in
RemarkInfoAP
)
_2AX_3EQ_4AX_LINKS
(in
rosetta.core.scoring.carbohydrates._core_scoring_carbohydrates_
)
__init__()
(in
AtomAtomPairFeaturesCreator
)
__instance_size__
(in
RemarkInfoCAP
)
_2EQ_3AX_4EQ_LINKS
(in
LinkageType
)
__init__()
(in
AtomAtomPairFeaturesCreatorAP
)
__instance_size__
(in
Remarks
)
_2EQ_3AX_4EQ_LINKS
(in
rosetta.core.scoring.carbohydrates._core_scoring_carbohydrates_
)
__init__()
(in
AtomAtomPairFeaturesCreatorCAP
)
__instance_size__
(in
RemarksAP
)
__add__()
(in
ConstFrameIterator
)
__init__()
(in
AtomInResidueAtomInResiduePairFeatures
)
__instance_size__
(in
RemarksCAP
)
__add__()
(in
FragID_Iterator
)
__init__()
(in
AtomInResidueAtomInResiduePairFeaturesAP
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
__add__()
(in
FrameIterator
)
__init__()
(in
AtomInResidueAtomInResiduePairFeaturesCAP
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
__add__()
(in
xyzMatrix_Real
)
__init__()
(in
AtomInResidueAtomInResiduePairFeaturesCreator
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
__add__()
(in
xyzMatrix_SSize
)
__init__()
(in
AtomInResidueAtomInResiduePairFeaturesCreatorAP
)
__instance_size__
(in
UnrecognizedAtomRecord
)
__add__()
(in
xyzMatrix_Size
)
__init__()
(in
AtomInResidueAtomInResiduePairFeaturesCreatorCAP
)
__instance_size__
(in
UnrecognizedAtomRecordAP
)
__add__()
(in
xyzMatrix_double
)
__init__()
(in
AtomTypesFeatures
)
__instance_size__
(in
UnrecognizedAtomRecordCAP
)
__add__()
(in
xyzMatrix_float
)
__init__()
(in
AtomTypesFeaturesAP
)
__instance_size__
(in
xyzStripeHashPoseAP
)
__add__()
(in
xyzTriple_Real
)
__init__()
(in
AtomTypesFeaturesCAP
)
__instance_size__
(in
xyzStripeHashPoseCAP
)
__add__()
(in
xyzTriple_SSize
)
__init__()
(in
AtomTypesFeaturesCreator
)
__instance_size__
(in
CopyDofs
)
__add__()
(in
xyzTriple_Size
)
__init__()
(in
AtomTypesFeaturesCreatorAP
)
__instance_size__
(in
CopyDofsAP
)
__add__()
(in
xyzTriple_double
)
__init__()
(in
AtomTypesFeaturesCreatorCAP
)
__instance_size__
(in
CopyDofsCAP
)
__add__()
(in
xyzTriple_float
)
__init__()
(in
BatchFeatures
)
__instance_size__
(in
CacheableDataType
)
__add__()
(in
xyzVector_Real
)
__init__()
(in
BatchFeaturesAP
)
__instance_size__
(in
CacheableDataTypeAP
)
__add__()
(in
xyzVector_SSize
)
__init__()
(in
BatchFeaturesCAP
)
__instance_size__
(in
CacheableDataTypeCAP
)
__add__()
(in
xyzVector_Size
)
__init__()
(in
BetaTurnDetection
)
__instance_size__
(in
CacheableObserverAP
)
__add__()
(in
xyzVector_double
)
__init__()
(in
BetaTurnDetectionAP
)
__instance_size__
(in
CacheableObserverCAP
)
__add__()
(in
xyzVector_float
)
__init__()
(in
BetaTurnDetectionCAP
)
__instance_size__
(in
CacheableObserverType
)
__add__()
(in
Rose
)
__init__()
(in
BetaTurnDetectionFeatures
)
__instance_size__
(in
CacheableObserverTypeAP
)
__ATTEN_ENUM__
(in
rosetta.core.scoring.sc._core_scoring_sc_
)
__init__()
(in
BetaTurnDetectionFeaturesAP
)
__instance_size__
(in
CacheableObserverTypeCAP
)
__call__()
(in
EnergyMethod
)
__init__()
(in
BetaTurnDetectionFeaturesCAP
)
__instance_size__
(in
CacheablePoseRawPtrAP
)
__call__()
(in
Tracer
)
__init__()
(in
BetaTurnDetectionFeaturesCreator
)
__instance_size__
(in
CacheablePoseRawPtrCAP
)
__call__()
(in
APolarHydrogenFilter
)
__init__()
(in
BetaTurnDetectionFeaturesCreatorAP
)
__instance_size__
(in
LengthEventCollector
)
__call__()
(in
AcceptorAtomFilter
)
__init__()
(in
BetaTurnDetectionFeaturesCreatorCAP
)
__instance_size__
(in
LengthEventCollectorAP
)
__call__()
(in
AromaticAtomFilter
)
__init__()
(in
ChargeChargeFeatures
)
__instance_size__
(in
LengthEventCollectorCAP
)
__call__()
(in
ElectronConfiguration
)
__init__()
(in
ChargeChargeFeaturesAP
)
__instance_size__
(in
ObserverCache
)
__call__()
(in
HeavyAtomFilter
)
__init__()
(in
ChargeChargeFeaturesCAP
)
__instance_size__
(in
ObserverCacheAP
)
__call__()
(in
HeavyAtomWithHydrogensFilter
)
__init__()
(in
ChargeChargeFeaturesCreator
)
__instance_size__
(in
ObserverCacheCAP
)
__call__()
(in
HeavyAtomWithPolarHydrogensFilter
)
__init__()
(in
ChargeChargeFeaturesCreatorAP
)
__instance_size__
(in
PositionConservedResiduesStoreAP
)
__call__()
(in
HydrogenAtomFilter
)
__init__()
(in
ChargeChargeFeaturesCreatorCAP
)
__instance_size__
(in
PositionConservedResiduesStoreCAP
)
__call__()
(in
PolarHydrogenFilter
)
__init__()
(in
DatabaseFilter
)
__instance_size__
(in
SpecialSegmentsObserver
)
__call__()
(in
RealFilter
)
__init__()
(in
DatabaseFilterAP
)
__instance_size__
(in
SpecialSegmentsObserverAP
)
__call__()
(in
DefaultCubeHash
)
__init__()
(in
DatabaseFilterCAP
)
__instance_size__
(in
SpecialSegmentsObserverCAP
)
__call__()
(in
ExactResidueMatcher
)
__init__()
(in
DatabaseJobInputter
)
__instance_size__
(in
FullModelInfoAP
)
__call__()
(in
ResidueMatcher
)
__init__()
(in
DatabaseJobInputterAP
)
__instance_size__
(in
FullModelInfoCAP
)
__call__()
(in
WatsonCrickResidueMatcher
)
__init__()
(in
DatabaseJobInputterCAP
)
__instance_size__
(in
FullModelParameters
)
__call__()
(in
VallFragmentEval
)
__init__()
(in
DatabaseJobInputterCreator
)
__instance_size__
(in
FullModelParametersAP
)
__call__()
(in
LengthGen
)
__init__()
(in
DatabaseJobInputterCreatorAP
)
__instance_size__
(in
FullModelParametersCAP
)
__call__()
(in
SecStructGen
)
__init__()
(in
DatabaseJobInputterCreatorCAP
)
__instance_size__
(in
CalculatorFactoryAP
)
__call__()
(in
VallFragmentGen
)
__init__()
(in
DatabaseJobOutputter
)
__instance_size__
(in
CalculatorFactoryCAP
)
__call__()
(in
AtomID_Map_T_bool_T
)
__init__()
(in
DatabaseJobOutputterAP
)
__instance_size__
(in
EnergyDependentCalculatorAP
)
__call__()
(in
AtomID_Map_T_core_id_AtomID_T
)
__init__()
(in
DatabaseJobOutputterCAP
)
__instance_size__
(in
EnergyDependentCalculatorCAP
)
__call__()
(in
AtomID_Map_T_double_T
)
__init__()
(in
DatabaseJobOutputterCreator
)
__instance_size__
(in
PoseMetricCalculatorAP
)
__call__()
(in
AtomID_Map_T_numeric_xyzVector_T_double_T__T
)
__init__()
(in
DatabaseJobOutputterCreatorAP
)
__instance_size__
(in
PoseMetricCalculatorCAP
)
__call__()
(in
NamedAtomID_Map_T_core_id_NamedAtomID_T
)
__init__()
(in
DatabaseJobOutputterCreatorCAP
)
__instance_size__
(in
PoseMetricContainer
)
__call__()
(in
ArmijoLineMinimization
)
__init__()
(in
DdGFeatures
)
__instance_size__
(in
PoseMetricContainerAP
)
__call__()
(in
AtomTreeMultifunc
)
__init__()
(in
DdGFeaturesAP
)
__instance_size__
(in
PoseMetricContainerCAP
)
__call__()
(in
BrentLineMinimization
)
__init__()
(in
DdGFeaturesCAP
)
__instance_size__
(in
StructureDependentCalculatorAP
)
__call__()
(in
CartesianMultifunc
)
__init__()
(in
DdGFeaturesCreator
)
__instance_size__
(in
StructureDependentCalculatorCAP
)
__call__()
(in
ConvergenceTest
)
__init__()
(in
DdGFeaturesCreatorAP
)
__instance_size__
(in
InterfaceDefinitionCalculatorAP
)
__call__()
(in
DFPMinConvergedAbsolute
)
__init__()
(in
DdGFeaturesCreatorCAP
)
__instance_size__
(in
InterfaceDefinitionCalculatorCAP
)
__call__()
(in
DFPMinConvergedFractional
)
__init__()
(in
FeaturesReporter
)
__instance_size__
(in
InterfaceDeltaEnergeticsCalculator
)
__call__()
(in
LineMinimizationAlgorithm
)
__init__()
(in
FeaturesReporterAP
)
__instance_size__
(in
InterfaceDeltaEnergeticsCalculatorAP
)
__call__()
(in
Multifunc
)
__init__()
(in
FeaturesReporterCAP
)
__instance_size__
(in
InterfaceDeltaEnergeticsCalculatorCAP
)
__call__()
(in
SingleResidueMultifunc
)
__init__()
(in
FeaturesReporterCreator
)
__instance_size__
(in
InterfaceNeighborDefinitionCalculator
)
__call__()
(in
StrongWolfeLineMinimization
)
__init__()
(in
FeaturesReporterCreatorAP
)
__instance_size__
(in
InterfaceNeighborDefinitionCalculatorAP
)
__call__()
(in
func_1d
)
__init__()
(in
FeaturesReporterCreatorCAP
)
__instance_size__
(in
InterfaceNeighborDefinitionCalculatorCAP
)
__call__()
(in
SymAtomTreeMultifunc
)
__init__()
(in
FeaturesReporterFactory
)
__instance_size__
(in
InterfaceSasaDefinitionCalculator
)
__call__()
(in
RotamerOperation
)
__init__()
(in
FeaturesReporterFactoryAP
)
__instance_size__
(in
InterfaceSasaDefinitionCalculatorAP
)
__call__()
(in
AllResFilter
)
__init__()
(in
FeaturesReporterFactoryCAP
)
__instance_size__
(in
InterfaceSasaDefinitionCalculatorCAP
)
__call__()
(in
AnyResFilter
)
__init__()
(in
GeometricSolvationFeatures
)
__instance_size__
(in
SasaCalculator2
)
__call__()
(in
ChainIs
)
__init__()
(in
GeometricSolvationFeaturesAP
)
__instance_size__
(in
SasaCalculator2AP
)
__call__()
(in
ChainIsnt
)
__init__()
(in
GeometricSolvationFeaturesCAP
)
__instance_size__
(in
SasaCalculator2CAP
)
__call__()
(in
NoResFilter
)
__init__()
(in
GeometricSolvationFeaturesCreator
)
__instance_size__
(in
SasaCalculatorLegacy
)
__call__()
(in
ResFilter
)
__init__()
(in
GeometricSolvationFeaturesCreatorAP
)
__instance_size__
(in
SasaCalculatorLegacyAP
)
__call__()
(in
ResFilterComposition
)
__init__()
(in
GeometricSolvationFeaturesCreatorCAP
)
__instance_size__
(in
SasaCalculatorLegacyCAP
)
__call__()
(in
ResidueHasProperty
)
__init__()
(in
HBondFeatures
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
__call__()
(in
ResidueIndexIs
)
__init__()
(in
HBondFeaturesAP
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
__call__()
(in
ResidueIndexIsnt
)
__init__()
(in
HBondFeaturesCAP
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
__call__()
(in
ResidueLacksProperty
)
__init__()
(in
HBondFeaturesCreator
)
__instance_size__
(in
BasePair
)
__call__()
(in
ResidueName3Is
)
__init__()
(in
HBondFeaturesCreatorAP
)
__instance_size__
(in
BasePairAP
)
__call__()
(in
ResidueName3Isnt
)
__init__()
(in
HBondFeaturesCreatorCAP
)
__instance_size__
(in
BasePairCAP
)
__call__()
(in
ResiduePDBIndexIs
)
__init__()
(in
HBondParameterFeatures
)
__instance_size__
(in
BaseStack
)
__call__()
(in
ResiduePDBIndexIsnt
)
__init__()
(in
HBondParameterFeaturesAP
)
__instance_size__
(in
BaseStackAP
)
__call__()
(in
ResiduePDBInfoHasLabel
)
__init__()
(in
HBondParameterFeaturesCAP
)
__instance_size__
(in
BaseStackCAP
)
__call__()
(in
ResiduePDBInfoLacksLabel
)
__init__()
(in
HBondParameterFeaturesCreator
)
__instance_size__
(in
RNA_IdealCoord
)
__call__()
(in
ResidueTypeFilter
)
__init__()
(in
HBondParameterFeaturesCreatorAP
)
__instance_size__
(in
RNA_IdealCoordAP
)
__call__()
(in
AtomVDW
)
__init__()
(in
HBondParameterFeaturesCreatorCAP
)
__instance_size__
(in
RNA_IdealCoordCAP
)
__call__()
(in
DockingScoreFunction
)
__init__()
(in
HelixCapFeatures
)
__instance_size__
(in
RNA_SuiteAssignment
)
__call__()
(in
ExcludedResPredicate
)
__init__()
(in
HelixCapFeaturesAP
)
__instance_size__
(in
RNA_SuiteAssignmentAP
)
__call__()
(in
IsProteinCAPredicate
)
__init__()
(in
HelixCapFeaturesCAP
)
__instance_size__
(in
RNA_SuiteAssignmentCAP
)
__call__()
(in
MinScoreScoreFunction
)
__init__()
(in
HelixCapFeaturesCreator
)
__instance_size__
(in
RNA_SuiteInfo
)
__call__()
(in
Predicate
)
__init__()
(in
HelixCapFeaturesCreatorAP
)
__instance_size__
(in
RNA_SuiteInfoAP
)
__call__()
(in
ResRangePredicate
)
__init__()
(in
HelixCapFeaturesCreatorCAP
)
__instance_size__
(in
RNA_SuiteInfoCAP
)
__call__()
(in
ScoreFunction
)
__init__()
(in
InterfaceFeatures
)
__instance_size__
(in
RNA_SuiteName
)
__call__()
(in
SelectedResPredicate
)
__init__()
(in
InterfaceFeaturesAP
)
__instance_size__
(in
RNA_SuiteNameAP
)
__call__()
(in
CHIEnergyFunction
)
__init__()
(in
InterfaceFeaturesCAP
)
__instance_size__
(in
RNA_SuiteNameCAP
)
__call__()
(in
CountPairAll
)
__init__()
(in
InterfaceFeaturesCreator
)
__instance_size__
(in
ConformationEventAP
)
__call__()
(in
CountPairFunction
)
__init__()
(in
InterfaceFeaturesCreatorAP
)
__instance_size__
(in
ConformationEventCAP
)
__call__()
(in
CountPairGeneric
)
__init__()
(in
InterfaceFeaturesCreatorCAP
)
__instance_size__
(in
DestructionEvent
)
__call__()
(in
CountPairNone
)
__init__()
(in
JobDataFeatures
)
__instance_size__
(in
DestructionEventAP
)
__call__()
(in
TrieCountPairGeneric
)
__init__()
(in
JobDataFeaturesAP
)
__instance_size__
(in
DestructionEventCAP
)
__call__()
(in
ConformationXYZ
)
__init__()
(in
JobDataFeaturesCAP
)
__instance_size__
(in
EnergyEventAP
)
__call__()
(in
FourPointsFunc
)
__init__()
(in
JobDataFeaturesCreator
)
__instance_size__
(in
EnergyEventCAP
)
__call__()
(in
ResiduePairXYZ
)
__init__()
(in
JobDataFeaturesCreatorAP
)
__instance_size__
(in
GeneralEvent
)
__call__()
(in
ResidueXYZ
)
__init__()
(in
JobDataFeaturesCreatorCAP
)
__instance_size__
(in
GeneralEventAP
)
__call__()
(in
XYZ_Func
)
__init__()
(in
LoopAnchorFeatures
)
__instance_size__
(in
GeneralEventCAP
)
__call__()
(in
DatabaseOccSolEne
)
__init__()
(in
LoopAnchorFeaturesAP
)
__instance_size__
(in
APBSConfig
)
__call__()
(in
Array2D
)
__init__()
(in
LoopAnchorFeaturesCAP
)
__instance_size__
(in
APBSConfigAP
)
__call__()
(in
OrderCBC
)
__init__()
(in
LoopAnchorFeaturesCreator
)
__instance_size__
(in
APBSConfigCAP
)
__call__()
(in
DistanceHistogram
)
__init__()
(in
LoopAnchorFeaturesCreatorAP
)
__instance_size__
(in
APBSResult
)
__call__()
(in
SymmetricScoreFunction
)
__init__()
(in
LoopAnchorFeaturesCreatorCAP
)
__instance_size__
(in
APBSResultAP
)
__call__()
(in
DP_Matrix
)
__init__()
(in
OrbitalsFeatures
)
__instance_size__
(in
APBSResultCAP
)
__call__()
(in
SequenceAlignmentHasher
)
__init__()
(in
OrbitalsFeaturesAP
)
__instance_size__
(in
APBSWrapper
)
__call__()
(in
Polynomial_1d
)
__init__()
(in
OrbitalsFeaturesCAP
)
__instance_size__
(in
APBSWrapperAP
)
__call__()
(in
XformHash32
)
__init__()
(in
OrbitalsFeaturesCreator
)
__instance_size__
(in
APBSWrapperCAP
)
__call__()
(in
XformHash64
)
__init__()
(in
OrbitalsFeaturesCreatorAP
)
__instance_size__
(in
AtomNeighbor
)
__call__()
(in
xyzMatrix_T_float_T
)
__init__()
(in
OrbitalsFeaturesCreatorCAP
)
__instance_size__
(in
AtomNeighborAP
)
__call__()
(in
AbsoluteValueExpression
)
__init__()
(in
PairFeatures
)
__instance_size__
(in
AtomNeighborCAP
)
__call__()
(in
AddExpression
)
__init__()
(in
PairFeaturesAP
)
__instance_size__
(in
AtomVDW
)
__call__()
(in
AndExpression
)
__init__()
(in
PairFeaturesCAP
)
__instance_size__
(in
AtomVDWAP
)
__call__()
(in
BinaryExpression
)
__init__()
(in
PairFeaturesCreator
)
__instance_size__
(in
AtomVDWCAP
)
__call__()
(in
DivideExpression
)
__init__()
(in
PairFeaturesCreatorAP
)
__instance_size__
(in
BB_Pos
)
__call__()
(in
EqualsExpression
)
__init__()
(in
PairFeaturesCreatorCAP
)
__instance_size__
(in
BB_PosAP
)
__call__()
(in
Expression
)
__init__()
(in
PdbDataFeatures
)
__instance_size__
(in
BB_PosCAP
)
__call__()
(in
GTE_Expression
)
__init__()
(in
PdbDataFeaturesAP
)
__instance_size__
(in
CSA
)
__call__()
(in
GT_Expression
)
__init__()
(in
PdbDataFeaturesCAP
)
__instance_size__
(in
CSAAP
)
__call__()
(in
ITEExpression
)
__init__()
(in
PdbDataFeaturesCreator
)
__instance_size__
(in
CSACAP
)
__call__()
(in
LTE_Expression
)
__init__()
(in
PdbDataFeaturesCreatorAP
)
__instance_size__
(in
CenHBPotential
)
__call__()
(in
LT_Expression
)
__init__()
(in
PdbDataFeaturesCreatorCAP
)
__instance_size__
(in
CenHBPotentialAP
)
__call__()
(in
LiteralExpression
)
__init__()
(in
PoseCommentsFeatures
)
__instance_size__
(in
CenHBPotentialCAP
)
__call__()
(in
MaxExpression
)
__init__()
(in
PoseCommentsFeaturesAP
)
__instance_size__
(in
CenListInfoAP
)
__call__()
(in
MetaMaxExpression
)
__init__()
(in
PoseCommentsFeaturesCAP
)
__instance_size__
(in
CenListInfoCAP
)
__call__()
(in
MetaMinExpression
)
__init__()
(in
PoseCommentsFeaturesCreator
)
__instance_size__
(in
CenRotEnvPairPotential
)
__call__()
(in
MinExpression
)
__init__()
(in
PoseCommentsFeaturesCreatorAP
)
__instance_size__
(in
CenRotEnvPairPotentialAP
)
__call__()
(in
MultiplyExpression
)
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(in
PoseCommentsFeaturesCreatorCAP
)
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(in
CenRotEnvPairPotentialCAP
)
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(in
NotExpression
)
__init__()
(in
PoseConformationFeatures
)
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(in
ChemicalShiftAnisotropyAP
)
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(in
OrExpression
)
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(in
PoseConformationFeaturesAP
)
__instance_size__
(in
ChemicalShiftAnisotropyCAP
)
__call__()
(in
SquarerootExpression
)
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(in
PoseConformationFeaturesCAP
)
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(in
ContextGraphAP
)
__call__()
(in
SubtractExpression
)
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(in
PoseConformationFeaturesCreator
)
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(in
ContextGraphCAP
)
__call__()
(in
UnaryExpression
)
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(in
PoseConformationFeaturesCreatorAP
)
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(in
ContextGraphFactory
)
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(in
VariableExpression
)
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(in
PoseConformationFeaturesCreatorCAP
)
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(in
ContextGraphFactoryAP
)
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(in
bin_index_hasher
)
__init__()
(in
ProteinBackboneAtomAtomPairFeatures
)
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(in
ContextGraphFactoryCAP
)
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(in
CompareKDPoints
)
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(in
ProteinBackboneAtomAtomPairFeaturesAP
)
__instance_size__
(in
DC
)
__call__()
(in
KDPoint_MinDist
)
__init__()
(in
ProteinBackboneAtomAtomPairFeaturesCAP
)
__instance_size__
(in
DCAP
)
__call__()
(in
RandomGenerator
)
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(in
ProteinBackboneAtomAtomPairFeaturesCreator
)
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(in
DCCAP
)
__call__()
(in
AllResiduesChanged
)
__init__()
(in
ProteinBackboneAtomAtomPairFeaturesCreatorAP
)
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(in
DenseEnergyContainerAP
)
__call__()
(in
_HashEntry
)
__init__()
(in
ProteinBackboneAtomAtomPairFeaturesCreatorCAP
)
__instance_size__
(in
DenseEnergyContainerCAP
)
__call__()
(in
_MergableEntries
)
__init__()
(in
ProteinBackboneTorsionAngleFeatures
)
__instance_size__
(in
DenseNeighborConstIterator
)
__call__()
(in
Pool_ConvergenceCheck
)
__init__()
(in
ProteinBackboneTorsionAngleFeaturesAP
)
__instance_size__
(in
DenseNeighborConstIteratorAP
)
__call__()
(in
PDBOutput
)
__init__()
(in
ProteinBackboneTorsionAngleFeaturesCAP
)
__instance_size__
(in
DenseNeighborConstIteratorCAP
)
__call__()
(in
ResTypeSequence_lt
)
__init__()
(in
ProteinBackboneTorsionAngleFeaturesCreator
)
__instance_size__
(in
DenseNeighborIterator
)
__call__()
(in
RotamerDNAHBondFilter
)
__init__()
(in
ProteinBackboneTorsionAngleFeaturesCreatorAP
)
__instance_size__
(in
DenseNeighborIteratorAP
)
__call__()
(in
BfactorMultifunc
)
__init__()
(in
ProteinBackboneTorsionAngleFeaturesCreatorCAP
)
__instance_size__
(in
DenseNeighborIteratorCAP
)
__call__()
(in
DatabaseFilter
)
__init__()
(in
ProteinBondGeometryFeatures
)
__instance_size__
(in
DerivVectorPair
)
__call__()
(in
TopCountOfAllInputs
)
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(in
ProteinBondGeometryFeaturesAP
)
__instance_size__
(in
DerivVectorPairAP
)
__call__()
(in
TopCountOfEachInput
)
__init__()
(in
ProteinBondGeometryFeaturesCAP
)
__instance_size__
(in
DerivVectorPairCAP
)
__call__()
(in
TopPercentOfAllInputs
)
__init__()
(in
ProteinBondGeometryFeaturesCreator
)
__instance_size__
(in
DipolarCouplingAP
)
__call__()
(in
TopPercentOfEachInput
)
__init__()
(in
ProteinBondGeometryFeaturesCreatorAP
)
__instance_size__
(in
DipolarCouplingCAP
)
__call__()
(in
OtherContextScoreFunction
)
__init__()
(in
ProteinBondGeometryFeaturesCreatorCAP
)
__instance_size__
(in
DockingScoreFunctionAP
)
__call__()
(in
CountFromLeft
)
__init__()
(in
ProteinRMSDFeatures
)
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(in
DockingScoreFunctionCAP
)
__call__()
(in
RelativeSequencePosition
)
__init__()
(in
ProteinRMSDFeaturesAP
)
__instance_size__
(in
EMapVector
)
__call__()
(in
CompareByScoreCombination
)
__init__()
(in
ProteinRMSDFeaturesCAP
)
__instance_size__
(in
EMapVectorAP
)
__call__()
(in
CompareQueryPosition
)
__init__()
(in
ProteinRMSDFeaturesCreator
)
__instance_size__
(in
EMapVectorCAP
)
__call__()
(in
CompareScoreComponent
)
__init__()
(in
ProteinRMSDFeaturesCreatorAP
)
__instance_size__
(in
Energies
)
__call__()
(in
CompareTotalScore
)
__init__()
(in
ProteinRMSDFeaturesCreatorCAP
)
__instance_size__
(in
EnergiesAP
)
__call__()
(in
FragmentComparatorBase
)
__init__()
(in
ProteinRMSDNoSuperpositionFeatures
)
__instance_size__
(in
EnergiesCAP
)
__call__()
(in
EntityElementsEqual
)
__init__()
(in
ProteinRMSDNoSuperpositionFeaturesAP
)
__instance_size__
(in
EnergyEdgeAP
)
__call__()
(in
Vec1Hash
)
__init__()
(in
ProteinRMSDNoSuperpositionFeaturesCAP
)
__instance_size__
(in
EnergyEdgeCAP
)
__call__()
(in
FitSimpleHelixMultiFunc
)
__init__()
(in
ProteinRMSDNoSuperpositionFeaturesCreator
)
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(in
EnergyGraphAP
)
__call__()
(in
AllResiduesChanged
)
__init__()
(in
ProteinRMSDNoSuperpositionFeaturesCreatorAP
)
__instance_size__
(in
EnergyGraphCAP
)
__call__()
(in
CompareTags
)
__init__()
(in
ProteinRMSDNoSuperpositionFeaturesCreatorCAP
)
__instance_size__
(in
EnergyNodeAP
)
__call__()
(in
RDFBase
)
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(in
ProteinResidueConformationFeatures
)
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(in
EnergyNodeCAP
)
__call__()
(in
RDFBinaryHbondFunction
)
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(in
ProteinResidueConformationFeaturesAP
)
__instance_size__
(in
EnvPairPotential
)
__call__()
(in
RDFBinaryOrbitalFunction
)
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(in
ProteinResidueConformationFeaturesCAP
)
__instance_size__
(in
EnvPairPotentialAP
)
__call__()
(in
RDFChargeFunction
)
__init__()
(in
ProteinResidueConformationFeaturesCreator
)
__instance_size__
(in
EnvPairPotentialCAP
)
__call__()
(in
RDFElecFunction
)
__init__()
(in
ProteinResidueConformationFeaturesCreatorAP
)
__instance_size__
(in
ExcludedResPredicateAP
)
__call__()
(in
RDFEtableFunction
)
__init__()
(in
ProteinResidueConformationFeaturesCreatorCAP
)
__instance_size__
(in
ExcludedResPredicateCAP
)
__call__()
(in
RDFHbondFunction
)
__init__()
(in
ProteinSilentReport
)
__instance_size__
(in
GenBornPoseInfoAP
)
__call__()
(in
RDFOrbitalFunction
)
__init__()
(in
ProteinSilentReportAP
)
__instance_size__
(in
GenBornPoseInfoCAP
)
__call__()
(in
Loop_lt
)
__init__()
(in
ProteinSilentReportCAP
)
__instance_size__
(in
GenBornPotential
)
__call__()
(in
RationalLoopComparator
)
__init__()
(in
ProtocolFeatures
)
__instance_size__
(in
GenBornPotentialAP
)
__call__()
(in
match_lite_equals
)
__init__()
(in
ProtocolFeaturesAP
)
__instance_size__
(in
GenBornPotentialCAP
)
__call__()
(in
match_lite_hasher
)
__init__()
(in
ProtocolFeaturesCAP
)
__instance_size__
(in
GenBornResidueInfo
)
__call__()
(in
us_secmatch_hit_compare
)
__init__()
(in
RadiusOfGyrationFeatures
)
__instance_size__
(in
GenBornResidueInfoAP
)
__call__()
(in
MonteCarloExceptionConverge
)
__init__()
(in
RadiusOfGyrationFeaturesAP
)
__instance_size__
(in
GenBornResidueInfoCAP
)
__call__()
(in
PoseCondition
)
__init__()
(in
RadiusOfGyrationFeaturesCAP
)
__instance_size__
(in
GenBornRotamerSetInfoAP
)
__call__()
(in
ConvergenceCheck
)
__init__()
(in
RadiusOfGyrationFeaturesCreator
)
__instance_size__
(in
GenBornRotamerSetInfoCAP
)
__call__()
(in
NormalModeMultifunc
)
__init__()
(in
RadiusOfGyrationFeaturesCreatorAP
)
__instance_size__
(in
Hairpin
)
__call__()
(in
OptEMultifunc
)
__init__()
(in
RadiusOfGyrationFeaturesCreatorCAP
)
__instance_size__
(in
HairpinAP
)
__call__()
(in
WrapperOptEMultifunc
)
__init__()
(in
Report
)
__instance_size__
(in
HairpinCAP
)
__call__()
(in
ExpExpression
)
__init__()
(in
ReportAP
)
__instance_size__
(in
Hairpins
)
__call__()
(in
InSetExpression
)
__init__()
(in
ReportCAP
)
__instance_size__
(in
HairpinsAP
)
__call__()
(in
IterativeVectorExpression
)
__init__()
(in
ReportToDB
)
__instance_size__
(in
HairpinsCAP
)
__call__()
(in
LnExpression
)
__init__()
(in
ReportToDBAP
)
__instance_size__
(in
Helices
)
__call__()
(in
PowExpression
)
__init__()
(in
ReportToDBCAP
)
__instance_size__
(in
HelicesAP
)
__call__()
(in
SurrogateVariableExpression
)
__init__()
(in
ReportToDBCreator
)
__instance_size__
(in
HelicesCAP
)
__call__()
(in
VMax
)
__init__()
(in
ReportToDBCreatorAP
)
__instance_size__
(in
IsProteinCAPredicateAP
)
__call__()
(in
VMaxBy
)
__init__()
(in
ReportToDBCreatorCAP
)
__instance_size__
(in
IsProteinCAPredicateCAP
)
__call__()
(in
VMin
)
__init__()
(in
ResidueBurialFeatures
)
__instance_size__
(in
LREnergyContainer
)
__call__()
(in
VMinBy
)
__init__()
(in
ResidueBurialFeaturesAP
)
__instance_size__
(in
LREnergyContainerAP
)
__call__()
(in
VariableVectorExpression
)
__init__()
(in
ResidueBurialFeaturesCAP
)
__instance_size__
(in
LREnergyContainerCAP
)
__call__()
(in
VectorExpression
)
__init__()
(in
ResidueBurialFeaturesCreator
)
__instance_size__
(in
MembraneEmbedAP
)
__call__()
(in
FingerprintMultifunc
)
__init__()
(in
ResidueBurialFeaturesCreatorAP
)
__instance_size__
(in
MembraneEmbedCAP
)
__call__()
(in
PocketExemplarMultifunc
)
__init__()
(in
ResidueBurialFeaturesCreatorCAP
)
__instance_size__
(in
MembranePotentialAP
)
__call__()
(in
RB_lt
)
__init__()
(in
ResidueConformationFeatures
)
__instance_size__
(in
MembranePotentialCAP
)
__call__()
(in
TensorsOptimizer
)
__init__()
(in
ResidueConformationFeaturesAP
)
__instance_size__
(in
MembraneTopologyAP
)
__call__()
(in
TensorsOptimizer
)
__init__()
(in
ResidueConformationFeaturesCAP
)
__instance_size__
(in
MembraneTopologyCAP
)
__call__()
(in
TensorsOptimizerFix
)
__init__()
(in
ResidueConformationFeaturesCreator
)
__instance_size__
(in
Membrane_FAEmbedAP
)
__call__()
(in
TensorsOptimizerSvd
)
__init__()
(in
ResidueConformationFeaturesCreatorAP
)
__instance_size__
(in
Membrane_FAEmbedCAP
)
__call__()
(in
TensorsOptimizer_Ts1
)
__init__()
(in
ResidueConformationFeaturesCreatorCAP
)
__instance_size__
(in
Membrane_FAPotentialAP
)
__call__()
(in
TensorsOptimizer_Ts2
)
__init__()
(in
ResidueFeatures
)
__instance_size__
(in
Membrane_FAPotentialCAP
)
__call__()
(in
TensorsOptimizer_Ts3
)
__init__()
(in
ResidueFeaturesAP
)
__instance_size__
(in
MinScoreScoreFunctionAP
)
__call__()
(in
TensorsOptimizer_Ts4
)
__init__()
(in
ResidueFeaturesCAP
)
__instance_size__
(in
MinScoreScoreFunctionCAP
)
__call__()
(in
AtomIDHashFunction
)
__init__()
(in
ResidueFeaturesCreator
)
__instance_size__
(in
MinimizationEdgeAP
)
__call__()
(in
compare_base_bin
)
__init__()
(in
ResidueFeaturesCreatorAP
)
__instance_size__
(in
MinimizationEdgeCAP
)
__call__()
(in
compare_int_pair
)
__init__()
(in
ResidueFeaturesCreatorCAP
)
__instance_size__
(in
MinimizationGraphAP
)
__call__()
(in
SF_Replica
)
__init__()
(in
ResidueGridScoresFeatures
)
__instance_size__
(in
MinimizationGraphCAP
)
__call__()
(in
ProteinCore
)
__init__()
(in
ResidueGridScoresFeaturesAP
)
__instance_size__
(in
MinimizationNodeAP
)
__call__()
(in
find_SilentStructOPs
)
__init__()
(in
ResidueGridScoresFeaturesCAP
)
__instance_size__
(in
MinimizationNodeCAP
)
__call__()
(in
FileName
)
__init__()
(in
ResidueGridScoresFeaturesCreator
)
__instance_size__
(in
NeighborList
)
__call__()
(in
PathName
)
__init__()
(in
ResidueGridScoresFeaturesCreatorAP
)
__instance_size__
(in
NeighborListAP
)
__contains__()
(in
map_Real_Real
)
__init__()
(in
ResidueGridScoresFeaturesCreatorCAP
)
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(in
NeighborListCAP
)
__contains__()
(in
map_Real_string
)
__init__()
(in
ResidueScoresFeatures
)
__instance_size__
(in
OmegaTether
)
__contains__()
(in
map_SSize_SSize
)
__init__()
(in
ResidueScoresFeaturesAP
)
__instance_size__
(in
OmegaTetherAP
)
__contains__()
(in
map_SSize_string
)
__init__()
(in
ResidueScoresFeaturesCAP
)
__instance_size__
(in
OmegaTetherCAP
)
__contains__()
(in
map_Size_Real
)
__init__()
(in
ResidueScoresFeaturesCreator
)
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(in
OneToAllEnergyContainerAP
)
__contains__()
(in
map_Size_Size
)
__init__()
(in
ResidueScoresFeaturesCreatorAP
)
__instance_size__
(in
OneToAllEnergyContainerCAP
)
__contains__()
(in
map_Size_SymDof
)
__init__()
(in
ResidueScoresFeaturesCreatorCAP
)
__instance_size__
(in
OneToAllNeighborConstIterator
)
__contains__()
(in
map_Size_string
)
__init__()
(in
ResidueSecondaryStructureFeatures
)
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(in
OneToAllNeighborConstIteratorAP
)
__contains__()
(in
map_char_pair_Size_Size
)
__init__()
(in
ResidueSecondaryStructureFeaturesAP
)
__instance_size__
(in
OneToAllNeighborConstIteratorCAP
)
__contains__()
(in
map_int_int
)
__init__()
(in
ResidueSecondaryStructureFeaturesCAP
)
__instance_size__
(in
OneToAllNeighborIterator
)
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(in
map_int_string
)
__init__()
(in
ResidueSecondaryStructureFeaturesCreator
)
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(in
OneToAllNeighborIteratorAP
)
__contains__()
(in
map_string_Real
)
__init__()
(in
ResidueSecondaryStructureFeaturesCreatorAP
)
__instance_size__
(in
OneToAllNeighborIteratorCAP
)
__contains__()
(in
map_string_SSize
)
__init__()
(in
ResidueSecondaryStructureFeaturesCreatorCAP
)
__instance_size__
(in
PQR
)
__contains__()
(in
map_string_Size
)
__init__()
(in
ResidueTotalScoresFeatures
)
__instance_size__
(in
PQRAP
)
__contains__()
(in
map_string_int
)
__init__()
(in
ResidueTotalScoresFeaturesAP
)
__instance_size__
(in
PQRCAP
)
__contains__()
(in
map_string_string
)
__init__()
(in
ResidueTotalScoresFeaturesCAP
)
__instance_size__
(in
P_AA
)
__contains__()
(in
set_Real
)
__init__()
(in
ResidueTotalScoresFeaturesCreator
)
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(in
P_AAAP
)
__contains__()
(in
set_SSize
)
__init__()
(in
ResidueTotalScoresFeaturesCreatorAP
)
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(in
P_AACAP
)
__contains__()
(in
set_Size
)
__init__()
(in
ResidueTotalScoresFeaturesCreatorCAP
)
__instance_size__
(in
PairEPotential
)
__contains__()
(in
set_char
)
__init__()
(in
ResidueTypesFeatures
)
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(in
PairEPotentialAP
)
__contains__()
(in
set_double
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__init__()
(in
ResidueTypesFeaturesAP
)
__instance_size__
(in
PairEPotentialCAP
)
__contains__()
(in
set_float
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__init__()
(in
ResidueTypesFeaturesCAP
)
__instance_size__
(in
PeptideBondedEnergyContainerAP
)
__contains__()
(in
set_int
)
__init__()
(in
ResidueTypesFeaturesCreator
)
__instance_size__
(in
PeptideBondedEnergyContainerCAP
)
__contains__()
(in
set_string
)
__init__()
(in
ResidueTypesFeaturesCreatorAP
)
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(in
PeptideBondedNeighborConstIterator
)
__contains__()
(in
set_uint
)
__init__()
(in
ResidueTypesFeaturesCreatorCAP
)
__instance_size__
(in
PeptideBondedNeighborConstIteratorAP
)
__CPP_AACompositionEnergy__
(in
rosetta.protocols.fldsgn.potentials._protocols_fldsgn_potentials_
)
__init__()
(in
RotamerBoltzmannWeightFeatures
)
__instance_size__
(in
PeptideBondedNeighborConstIteratorCAP
)
__CPP_AACompositionEnergyCreator__
(in
rosetta.protocols.fldsgn.potentials._protocols_fldsgn_potentials_
)
__init__()
(in
RotamerBoltzmannWeightFeaturesAP
)
__instance_size__
(in
PeptideBondedNeighborIterator
)
__CPP_ABEGO_SS_Pool__
(in
rosetta.protocols.frag_picker.quota._protocols_frag_picker_quota_
)
__init__()
(in
RotamerBoltzmannWeightFeaturesCAP
)
__instance_size__
(in
PeptideBondedNeighborIteratorAP
)
__CPP_ABEGO_SS_Score__
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
__init__()
(in
RotamerBoltzmannWeightFeaturesCreator
)
__instance_size__
(in
PeptideBondedNeighborIteratorCAP
)
__CPP_ABEGOEval__
(in
rosetta.core.fragment.picking_old.vall.eval._core_fragment_picking_old_vall_eval_
)
__init__()
(in
RotamerBoltzmannWeightFeaturesCreatorAP
)
__instance_size__
(in
PoissonBoltzmannPotential
)
__CPP_AbinitioBaseFilter__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
RotamerBoltzmannWeightFeaturesCreatorCAP
)
__instance_size__
(in
PoissonBoltzmannPotentialAP
)
__CPP_AbinitioMoverWeight__
(in
rosetta.protocols.topology_broker.weights._protocols_topology_broker_weights_
)
__init__()
(in
RotamerFeatures
)
__instance_size__
(in
PoissonBoltzmannPotentialCAP
)
__CPP_AbrelaxMover__
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
__init__()
(in
RotamerFeaturesAP
)
__instance_size__
(in
Predicate
)
__CPP_AbscriptLoopCloserCM__
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
__init__()
(in
RotamerFeaturesCAP
)
__instance_size__
(in
PredicateAP
)
__CPP_AbscriptLoopCloserCMCreator__
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
__init__()
(in
RotamerFeaturesCreator
)
__instance_size__
(in
PredicateCAP
)
__CPP_AbscriptMover__
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
__init__()
(in
RotamerFeaturesCreatorAP
)
__instance_size__
(in
ProQPotential
)
__CPP_AbscriptMoverCreator__
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
__init__()
(in
RotamerFeaturesCreatorCAP
)
__instance_size__
(in
ProQPotentialAP
)
__CPP_AbscriptStageMover__
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
__init__()
(in
RotamerRecoveryFeatures
)
__instance_size__
(in
ProQPotentialCAP
)
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rosetta.numeric.expression_parser._numeric_expression_parser_
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RotamerRecoveryFeaturesAP
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RDC
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rosetta.protocols.jd2.archive._protocols_jd2_archive_
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RotamerRecoveryFeaturesCAP
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RDCAP
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rosetta.protocols.loop_modeling.utilities._protocols_loop_modeling_utilities_
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RotamerRecoveryFeaturesCreator
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RDCCAP
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rosetta.core.scoring.packstat._core_scoring_packstat_
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RotamerRecoveryFeaturesCreatorAP
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RDC_Rohl
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rosetta.protocols.match._protocols_match_
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RotamerRecoveryFeaturesCreatorCAP
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RDC_RohlAP
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rosetta.protocols.domain_assembly._protocols_domain_assembly_
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RDC_RohlCAP
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rosetta.core.chemical._core_chemical_
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Rama2BOffset
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rosetta.core.chemical._core_chemical_
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RuntimeFeaturesCAP
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Rama2BOffsetAP
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rosetta.core.pack.task.operation._core_pack_task_operation_
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RuntimeFeaturesCreator
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Rama2BOffsetCAP
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rosetta.core.pack.task.operation._core_pack_task_operation_
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RuntimeFeaturesCreatorAP
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Ramachandran
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rosetta.core.chemical._core_chemical_
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RuntimeFeaturesCreatorCAP
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Ramachandran2B
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rosetta.core.chemical._core_chemical_
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SaltBridgeFeatures
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Ramachandran2BAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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SaltBridgeFeaturesAP
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Ramachandran2BCAP
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SaltBridgeFeaturesCAP
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RamachandranAP
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SaltBridgeFeaturesCreator
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RamachandranCAP
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rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
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SaltBridgeFeaturesCreatorAP
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ResPairMinimizationData
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rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
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SaltBridgeFeaturesCreatorCAP
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ResPairMinimizationDataAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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ScoreFunctionFeatures
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ResPairMinimizationDataCAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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ScoreFunctionFeaturesAP
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ResRangePredicateAP
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rosetta.core.chemical._core_chemical_
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ScoreFunctionFeaturesCAP
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ResRangePredicateCAP
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rosetta.core.chemical._core_chemical_
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ScoreFunctionFeaturesCreator
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ResSingleMinimizationData
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rosetta.core.chemical._core_chemical_
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ScoreFunctionFeaturesCreatorAP
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ResSingleMinimizationDataAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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ScoreFunctionFeaturesCreatorCAP
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ResSingleMinimizationDataCAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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ScoreTypeFeatures
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ResidualDipolarCouplingAP
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rosetta.numeric.expression_parser._numeric_expression_parser_
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ScoreTypeFeaturesAP
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ResidualDipolarCouplingCAP
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ScoreTypeFeaturesCAP
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ResidualDipolarCoupling_RohlAP
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rosetta.protocols.ligand_docking._protocols_ligand_docking_
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ScoreTypeFeaturesCreator
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ResidualDipolarCoupling_RohlCAP
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rosetta.protocols.ligand_docking._protocols_ligand_docking_
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ScoreTypeFeaturesCreatorAP
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ResidueNblistDataAP
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rosetta.protocols.ligand_docking._protocols_ligand_docking_
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ScoreTypeFeaturesCreatorCAP
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ResidueNblistDataCAP
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rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
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ScreeningFeatures
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ResidueNeighborConstIteratorAP
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rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
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ScreeningFeaturesAP
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ResidueNeighborConstIteratorCAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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ScreeningFeaturesCAP
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ResidueNeighborIteratorAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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ScreeningFeaturesCreator
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ResidueNeighborIteratorCAP
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rosetta.protocols.membrane._protocols_membrane_
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ScreeningFeaturesCreatorAP
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ResiduePairNeighborListAP
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rosetta.protocols.membrane._protocols_membrane_
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ScreeningFeaturesCreatorCAP
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ResiduePairNeighborListCAP
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rosetta.protocols.stepwise.monte_carlo.mover._protocols_stepwise_monte_carlo_mover_
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SecondaryStructureSegment
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SS_InfoAP
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rosetta.protocols.membrane._protocols_membrane_
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SecondaryStructureSegmentAP
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SS_InfoCAP
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rosetta.protocols.membrane._protocols_membrane_
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SecondaryStructureSegmentCAP
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SS_Killhairpins_InfoAP
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rosetta.protocols.stepwise.monte_carlo.mover._protocols_stepwise_monte_carlo_mover_
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SecondaryStructureSegmentFeatures
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SS_Killhairpins_InfoCAP
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rosetta.core.chemical._core_chemical_
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SecondaryStructureSegmentFeaturesAP
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ScoreFunction
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rosetta.core.chemical._core_chemical_
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SecondaryStructureSegmentFeaturesCAP
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ScoreFunctionAP
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rosetta.core.pack.rotamer_set._core_pack_rotamer_set_
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SecondaryStructureSegmentFeaturesCreator
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ScoreFunctionCAP
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rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_
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SecondaryStructureSegmentFeaturesCreatorAP
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ScoreFunctionFactory
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rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
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SecondaryStructureSegmentFeaturesCreatorCAP
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ScoreFunctionFactoryAP
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rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
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SingletonBase_T_core_chemical_ChemicalManager_T
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ScoreFunctionFactoryCAP
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rosetta.protocols.metal_interface._protocols_metal_interface_
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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ScoreFunctionInfo
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rosetta.numeric._numeric_
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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ScoreFunctionInfoAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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SingletonBase_T_core_pack_dunbrack_RotamerLibrary_T
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ScoreFunctionInfoCAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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SingletonBase_T_core_pack_dunbrack_RotamerLibrary_TAP
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ScoreTypeManager
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rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
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SingletonBase_T_core_pack_dunbrack_RotamerLibrary_TCAP
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ScoreTypeManagerAP
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rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
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SingletonBase_T_core_scoring_geometric_solvation_GridInfo_T
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ScoreTypeManagerCAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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SingletonBase_T_core_scoring_geometric_solvation_GridInfo_TAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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SingletonBase_T_core_scoring_geometric_solvation_GridInfo_TCAP
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ScoringManagerCAP
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rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
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SingletonBase_T_core_scoring_geometric_solvation_WaterWeightGridSet_T
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SecondaryStructurePotential
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rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
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SingletonBase_T_core_scoring_geometric_solvation_WaterWeightGridSet_TAP
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SecondaryStructurePotentialAP
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rosetta.core.sequence._core_sequence_
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SingletonBase_T_core_scoring_geometric_solvation_WaterWeightGridSet_TCAP
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SecondaryStructurePotentialCAP
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rosetta.protocols.evaluation._protocols_evaluation_
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SmotifFeatures
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SecondaryStructureWeights
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rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
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SmotifFeaturesAP
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SecondaryStructureWeightsAP
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rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
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SmotifFeaturesCAP
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SecondaryStructureWeightsCAP
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SmotifFeaturesCreator
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SelectedResPredicateAP
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rosetta.core.pack.task._core_pack_task_
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SmotifFeaturesCreatorAP
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SelectedResPredicateCAP
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rosetta.core.pack.task._core_pack_task_
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SmotifFeaturesCreatorCAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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rosetta.core.pack.task._core_pack_task_
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rosetta.protocols.toolbox._protocols_toolbox_
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rosetta.protocols.frag_picker._protocols_frag_picker_
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StructureFeaturesCAP
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rosetta.core.pack.task.operation._core_pack_task_operation_
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StructureFeaturesCreator
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rosetta.core.pack.task.operation._core_pack_task_operation_
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StructureFeaturesCreatorAP
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rosetta.protocols.abinitio._protocols_abinitio_
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StructureFeaturesCreatorCAP
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rosetta.protocols.hybridization._protocols_hybridization_
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StructureScoresFeatures
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SmallAtNbAP
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StructureScoresFeaturesAP
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SmallAtNbCAP
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rosetta.core.scoring.func._core_scoring_func_
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StructureScoresFeaturesCAP
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SmoothEnvPairPotential
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rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
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StructureScoresFeaturesCreator
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SmoothEnvPairPotentialAP
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rosetta.core.scoring.constraints._core_scoring_constraints_
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TaskOperationFeatures
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SmoothScoreTermCoeffsAP
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rosetta.core.scoring.constraints._core_scoring_constraints_
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TaskOperationFeaturesAP
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SmoothScoreTermCoeffsCAP
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rosetta.core.scoring.constraints._core_scoring_constraints_
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TaskOperationFeaturesCAP
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rosetta.core.scoring.constraints._core_scoring_constraints_
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TaskOperationFeaturesCreator
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rosetta.core.scoring.constraints._core_scoring_constraints_
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TaskOperationFeaturesCreatorAP
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rosetta.core.scoring.etable._core_scoring_etable_
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TaskOperationFeaturesCreatorCAP
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TMscore
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TopCountOfAllInputs
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TMscoreAP
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rosetta.protocols.anchored_design._protocols_anchored_design_
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TopCountOfAllInputsAP
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TMscoreCAP
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rosetta.protocols.grafting._protocols_grafting_
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TopCountOfAllInputsCAP
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TMscoreStore
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rosetta.protocols.grafting._protocols_grafting_
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TopCountOfEachInput
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TMscoreStoreAP
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rosetta.protocols.anchored_design._protocols_anchored_design_
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TopCountOfEachInputAP
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TMscoreStoreCAP
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TopCountOfEachInputCAP
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rosetta.numeric.expression_parser._numeric_expression_parser_
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TopPercentOfAllInputsAP
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TopPercentOfAllInputsCAP
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TopPercentOfEachInputAP
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TopPercentOfEachInputCAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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rosetta.protocols.simple_filters._protocols_simple_filters_
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TotalScoreFeaturesAP
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rosetta.core.fragment._core_fragment_
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TotalScoreFeaturesCAP
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rosetta.protocols.antibody.design._protocols_antibody_design_
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TotalScoreFeaturesCreator
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rosetta.protocols.antibody.design._protocols_antibody_design_
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TotalScoreFeaturesCreatorAP
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rosetta.protocols.antibody.design._protocols_antibody_design_
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TotalScoreFeaturesCreatorCAP
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AmbiguousNMRConstraintCreatorAP
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CaCbCbCa_Dihedral_FuncCAP
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CaCbCb_Angle_FuncCAP
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CompoundFilterCreator
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CompoundFilterCreatorAP
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CompoundFilterCreatorCAP
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rosetta.core.scoring.methods._core_scoring_methods_
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Filter
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FilterAP
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FilterCAP
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FilterCollectionCAP
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FilterCreator
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FilterCreatorCAP
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ReplicateFilter
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DisulfideMatchingNeighborIterator
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DisulfideMatchingNeighborIteratorCAP
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rosetta.protocols.antibody._protocols_antibody_
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(in
__CPP_MoveBeforeFilterCreator__
)
__instance_size__
(in
DNAChiEnergyCreatorCAP
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__CPP_CloseOneMover__
(in
rosetta.protocols.antibody_legacy._protocols_antibody_legacy_
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__init__()
(in
__CPP_MoveBeforeFilter__
)
__instance_size__
(in
DNATorsionEnergyAP
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__CPP_CloudPDBWriter__
(in
rosetta.protocols.match.output._protocols_match_output_
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(in
__CPP_ReplicateFilterCreator__
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__instance_size__
(in
DNATorsionEnergyCAP
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__CPP_ClusterBase__
(in
rosetta.protocols.cluster._protocols_cluster_
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__init__()
(in
__CPP_ReplicateFilter__
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__instance_size__
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DNATorsionEnergyCreatorAP
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__CPP_ClusterPhilStyle__
(in
rosetta.protocols.cluster._protocols_cluster_
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(in
__CPP_StochasticFilterCreator__
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__instance_size__
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DNATorsionEnergyCreatorCAP
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__CPP_ClusterPhilStyle_Loop__
(in
rosetta.protocols.cluster._protocols_cluster_
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(in
__CPP_StochasticFilter__
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__instance_size__
(in
DNATorsionPotential
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__CPP_ClusterPhilStyle_PoseReporter__
(in
rosetta.protocols.cluster._protocols_cluster_
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(in
__CPP_TimeFilterCreator__
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__instance_size__
(in
DNATorsionPotentialAP
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__CPP_CoarseRNA_LoopCloser__
(in
rosetta.protocols.coarse_rna._protocols_coarse_rna_'
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(in
__CPP_TimeFilter__
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__instance_size__
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DNATorsionPotentialCAP
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__CPP_COFilter__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
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(in
__CPP_TrueFilterCreator__
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__instance_size__
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DNA_BasePotential
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__CPP_CombineChainsMover__
(in
rosetta.protocols.domain_assembly._protocols_domain_assembly_
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__CPP_TrueFilter__
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__instance_size__
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DNA_BasePotentialAP
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__CPP_CombinedConstraintEvaluator__
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rosetta.protocols.constraints_additional._protocols_constraints_additional_
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BluePrintBDR
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__instance_size__
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DNA_BasePotentialCAP
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__CPP_CombinedConstraintEvaluatorCreator__
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rosetta.protocols.constraints_additional._protocols_constraints_additional_
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BluePrintBDRAP
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__instance_size__
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DirectReadoutPotential
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rosetta.protocols.filters._protocols_filters_
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BluePrintBDRCAP
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__instance_size__
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DirectReadoutPotentialAP
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__CPP_CombinedFilterCreator__
(in
rosetta.protocols.filters._protocols_filters_
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BluePrintBDRCreator
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__instance_size__
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DirectReadoutPotentialCAP
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__CPP_CombinedTaskOperation__
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rosetta.protocols.flxbb._protocols_flxbb_
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BluePrintBDRCreatorAP
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__instance_size__
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SingletonBase_T_core_chemical_ChemicalManager_T
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__CPP_CombinePoseMover__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
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BluePrintBDRCreatorCAP
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__instance_size__
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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__CPP_COMCoordinateConstraint__
(in
rosetta.protocols.constraints_additional._protocols_constraints_additional_
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__init__()
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CircularPermutation
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__instance_size__
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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__CPP_CompareByScoreCombination__
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
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__init__()
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CircularPermutationAP
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__instance_size__
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TorsionFourierComponent
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__CPP_CompareQueryPosition__
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
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__init__()
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CircularPermutationCAP
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__instance_size__
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TorsionFourierComponentAP
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__CPP_CompareScoreComponent__
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
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CircularPermutationCreator
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__instance_size__
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TorsionFourierComponentCAP
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__CPP_CompareTotalScore__
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
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__init__()
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CircularPermutationCreatorAP
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__instance_size__
(in
Dssp
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__CPP_CompassScoringScheme__
(in
rosetta.core.sequence._core_sequence_
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__init__()
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CircularPermutationCreatorCAP
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__instance_size__
(in
DsspAP
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__CPP_CompleteConnectionsFilter__
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
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__init__()
(in
MatchResidues
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__instance_size__
(in
DsspCAP
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__CPP_CompleteConnectionsFilterCreator__
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
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__init__()
(in
MatchResiduesAP
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__instance_size__
(in
Pairing
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__CPP_CompleteLinkClusterer__
(in
rosetta.numeric._numeric_
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__init__()
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MatchResiduesCAP
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__instance_size__
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PairingAP
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__CPP_ComposeSearchPatterns__
(in
rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_
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__init__()
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MatchResiduesMover
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__instance_size__
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PairingCAP
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(in
rosetta.protocols.frag_picker._protocols_frag_picker_
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__init__()
(in
MatchResiduesMoverAP
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__instance_size__
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StrandPairing
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__CPP_CompositeScoringScheme__
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rosetta.core.sequence._core_sequence_
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MatchResiduesMoverCAP
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__instance_size__
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StrandPairingAP
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rosetta.core.sequence._core_sequence_
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__init__()
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MatchResiduesMoverCreator
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__instance_size__
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StrandPairingCAP
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__CPP_CompositeSequenceCreator__
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rosetta.core.sequence._core_sequence_
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__init__()
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MatchResiduesMoverCreatorAP
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__instance_size__
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StrandPairingSet
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__CPP_CompositionMover__
(in
rosetta.protocols.moves._protocols_moves_
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__init__()
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MatchResiduesMoverCreatorCAP
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__instance_size__
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StrandPairingSetAP
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(in
rosetta.protocols.filters._protocols_filters_
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__init__()
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NcontactsCalculator
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__instance_size__
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StrandPairingSetCAP
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__CPP_CompoundFilterCreator__
(in
rosetta.protocols.filters._protocols_filters_
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__init__()
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NcontactsCalculatorAP
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__instance_size__
(in
ElecAtomAP
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__CPP_CompoundInterpolator__
(in
rosetta.numeric.interpolation.spline._numeric_interpolation_spline_
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__init__()
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NcontactsCalculatorCAP
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__instance_size__
(in
ElecAtomCAP
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__CPP_CompoundTranslate__
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
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__init__()
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SheetConstraintsRCG
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__instance_size__
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ElecGroup
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__CPP_CompoundTranslateCreator__
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
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__init__()
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SheetConstraintsRCGAP
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__instance_size__
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ElecGroupAP
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__CPP_ComputeLigandRDF__
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
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__init__()
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SheetConstraintsRCGCAP
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__instance_size__
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ElecGroupCAP
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__CPP_ComputeLigandRDFCreator__
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
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SheetCstGeneratorCreator
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__instance_size__
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FAElecContextDataAP
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(in
rosetta.protocols.environment._protocols_environment_
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SheetCstGeneratorCreatorAP
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__instance_size__
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FAElecContextDataCAP
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__CPP_CoMTrackerCMCreator__
(in
rosetta.protocols.environment._protocols_environment_
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SheetCstGeneratorCreatorCAP
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__instance_size__
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FA_ElecEnergyAP
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__CPP_ConcurrencyTest__
(in
rosetta.protocols.features.helixAssembly._protocols_features_helixAssembly_
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SingletonBase_T_core_chemical_ChemicalManager_T
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__instance_size__
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FA_ElecEnergyAroAllAP
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__CPP_ConcurrencyTestCreator__
(in
rosetta.protocols.features.helixAssembly._protocols_features_helixAssembly_
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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FA_ElecEnergyAroAllCAP
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rosetta.core.conformation._core_conformation_
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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FA_ElecEnergyAroAllCreatorAP
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rosetta.core.scoring.func._core_scoring_func_
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__CPP_BluePrintBDRCreator__
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__instance_size__
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FA_ElecEnergyAroAllCreatorCAP
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__CPP_ConformerSwitchMover__
(in
rosetta.protocols.docking._protocols_docking_
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__CPP_BluePrintBDR__
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__instance_size__
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FA_ElecEnergyAroAroAP
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__CPP_ConformerSwitchMoverCreator__
(in
rosetta.protocols.docking._protocols_docking_
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__init__()
(in
__CPP_CircularPermutationCreator__
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__instance_size__
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FA_ElecEnergyAroAroCAP
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__CPP_ConsensusDesignMover__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
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__CPP_CircularPermutation__
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__instance_size__
(in
FA_ElecEnergyAroAroCreatorAP
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__CPP_ConsensusDesignMoverCreator__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
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__init__()
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__CPP_MatchResiduesMoverCreator__
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__instance_size__
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FA_ElecEnergyAroAroCreatorCAP
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__CPP_ConservativeDesignOperation__
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rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
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__CPP_MatchResiduesMover__
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__instance_size__
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FA_ElecEnergyCAP
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__CPP_ConservedPosMutationFilter__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
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__CPP_SheetConstraintsRCG__
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__instance_size__
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FA_ElecEnergyCreatorAP
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__CPP_ConservedPosMutationFilterCreator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
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__CPP_SheetCstGeneratorCreator__
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__instance_size__
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FA_ElecEnergyCreatorCAP
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__CPP_ConstAbinitioMoverWeight__
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rosetta.protocols.topology_broker.weights._protocols_topology_broker_weights_
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__init__()
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CoreDunbrackFilter
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FA_GrpElecEnergyAP
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__CPP_ConstantConstraint__
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rosetta.core.scoring.constraints._core_scoring_constraints_
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CoreDunbrackFilterAP
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__instance_size__
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FA_GrpElecEnergyCAP
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__CPP_ConstantFunc__
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rosetta.core.scoring.func._core_scoring_func_
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CoreDunbrackFilterCAP
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__instance_size__
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FA_GrpElecEnergyCreatorAP
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__CPP_ConstPattern__
(in
rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_
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CoreDunbrackFilterCreator
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__instance_size__
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FA_GrpElecEnergyCreatorCAP
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__CPP_Constraint__
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rosetta.basic.database.schema_generator._basic_database_schema_generator_
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CoreDunbrackFilterCreatorAP
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__instance_size__
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GroupElec
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rosetta.core.scoring.constraints._core_scoring_constraints_
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CoreDunbrackFilterCreatorCAP
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__instance_size__
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GroupElecAP
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__CPP_ConstraintCreator__
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rosetta.core.scoring.constraints._core_scoring_constraints_
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__init__()
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FragQualFilter
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GroupElecCAP
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__CPP_ConstraintEdge__
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rosetta.core.scoring.constraints._core_scoring_constraints_
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__init__()
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FragQualFilterAP
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__instance_size__
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RNA_FA_ElecEnergyAP
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__CPP_ConstraintedOptimizationWeightFunc__
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rosetta.protocols.optimize_weights._protocols_optimize_weights_
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FragQualFilterCAP
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__instance_size__
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RNA_FA_ElecEnergyCAP
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rosetta.protocols.constraints_additional._protocols_constraints_additional_
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FragQualFilterCreator
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RNA_FA_ElecEnergyCreatorAP
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__CPP_ConstraintEvaluatorCreator__
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rosetta.protocols.constraints_additional._protocols_constraints_additional_
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FragQualFilterCreatorAP
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__instance_size__
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RNA_FA_ElecEnergyCreatorCAP
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__CPP_ConstraintFragmentSampler__
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rosetta.protocols.abinitio._protocols_abinitio_
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FragQualFilterCreatorCAP
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__instance_size__
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SingletonBase_T_core_chemical_ChemicalManager_T
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rosetta.core.scoring.constraints._core_scoring_constraints_
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HSSTripletFilter
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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__CPP_ConstraintNode__
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rosetta.core.scoring.constraints._core_scoring_constraints_
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HSSTripletFilterAP
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__instance_size__
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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__CPP_ConstrainToIdealMover__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
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__init__()
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HSSTripletFilterCAP
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__instance_size__
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weight_triple
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rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
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HSSTripletFilterCreator
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weight_tripleAP
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__CPP_ConstraintPreparerCreator__
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rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
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HSSTripletFilterCreatorAP
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__instance_size__
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weight_tripleCAP
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rosetta.core.scoring.constraints._core_scoring_constraints_
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HSSTripletFilterCreatorCAP
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__instance_size__
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ElecDensAllAtomCenEnergyAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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HelixKinkFilter
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__instance_size__
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ElecDensAllAtomCenEnergyCAP
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__CPP_ConstraintScoreCutoffFilterCreator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
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HelixKinkFilterAP
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ElecDensAllAtomCenEnergyCreatorAP
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__CPP_ConstraintsEnergy__
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rosetta.core.scoring.constraints._core_scoring_constraints_
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HelixKinkFilterCAP
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ElecDensAllAtomCenEnergyCreatorCAP
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__CPP_ConstraintsEnergyCreator__
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
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HelixKinkFilterCreator
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__instance_size__
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ElecDensCenEnergyAP
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__CPP_ConstraintSet__
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rosetta.core.scoring.constraints._core_scoring_constraints_
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HelixKinkFilterCreatorAP
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__instance_size__
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ElecDensCenEnergyCAP
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__CPP_ConstraintSetMover__
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rosetta.protocols.simple_moves._protocols_simple_moves_
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HelixKinkFilterCreatorCAP
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__instance_size__
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ElecDensCenEnergyCreatorAP
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__CPP_ConstraintSetMoverCreator__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
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HelixPairingFilter
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__instance_size__
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ElecDensCenEnergyCreatorCAP
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__CPP_ConstraintSetScore__
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rosetta.protocols.sic_dock._protocols_sic_dock_
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HelixPairingFilterAP
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ElecDensEnergyAP
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__CPP_ConstScore__
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rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
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HelixPairingFilterCAP
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__instance_size__
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ElecDensEnergyCAP
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__CPP_ContactMap__
(in
rosetta.protocols.contact_map._protocols_contact_map_
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HelixPairingFilterCreator
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ElecDensEnergyCreatorAP
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__CPP_ContactMapCreator__
(in
rosetta.protocols.contact_map._protocols_contact_map_
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HelixPairingFilterCreatorAP
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ElecDensEnergyCreatorCAP
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__CPP_ContactMapEvaluator__
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rosetta.protocols.simple_filters._protocols_simple_filters_
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HelixPairingFilterCreatorCAP
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__instance_size__
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ElectronDensity
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__CPP_ContactMapEvaluatorCreator__
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rosetta.protocols.simple_filters._protocols_simple_filters_
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InterlockingAromaFilter
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ElectronDensityAP
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rosetta.core.scoring.methods._core_scoring_methods_
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InterlockingAromaFilterAP
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ElectronDensityCAP
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__CPP_ContactOrderEnergyCreator__
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rosetta.core.scoring.methods._core_scoring_methods_
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InterlockingAromaFilterCAP
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ElectronDensityLoaderAP
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rosetta.core.scoring.geometric_solvation._core_scoring_geometric_solvation_
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InterlockingAromaFilterCreator
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__instance_size__
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ElectronDensityLoaderCAP
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__CPP_ContextDependentGeometricSolEnergyCreator__
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rosetta.core.scoring.geometric_solvation._core_scoring_geometric_solvation_
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InterlockingAromaFilterCreatorAP
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ElectronDensityLoaderCreatorAP
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__CPP_ContextDependentLRTwoBodyEnergy__
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rosetta.core.scoring.methods._core_scoring_methods_
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InterlockingAromaFilterCreatorCAP
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ElectronDensityLoaderCreatorCAP
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rosetta.core.scoring.methods._core_scoring_methods_
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NcontactsFilter
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ElectronDensityOptionsAP
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rosetta.core.scoring.methods._core_scoring_methods_
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NcontactsFilterAP
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ElectronDensityOptionsCAP
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__CPP_ContextIndependentGeometricSolEnergy__
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rosetta.core.scoring.geometric_solvation._core_scoring_geometric_solvation_
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NcontactsFilterCAP
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ElectronDensityOptionsCreatorAP
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__CPP_ContextIndependentGeometricSolEnergyCreator__
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rosetta.core.scoring.geometric_solvation._core_scoring_geometric_solvation_
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NcontactsFilterCreator
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ElectronDensityOptionsCreatorCAP
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__CPP_ContextIndependentLRTwoBodyEnergy__
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rosetta.core.scoring.methods._core_scoring_methods_
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NcontactsFilterCreatorAP
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FastDensEnergyAP
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rosetta.core.scoring.methods._core_scoring_methods_
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NcontactsFilterCreatorCAP
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FastDensEnergyCAP
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rosetta.core.scoring.methods._core_scoring_methods_
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ParallelBetaPairingPreferenceFilter
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FastDensEnergyCreatorAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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ParallelBetaPairingPreferenceFilterAP
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FastDensEnergyCreatorCAP
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__CPP_ContingentAcceptMoverCreator__
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rosetta.protocols.simple_moves._protocols_simple_moves_
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ParallelBetaPairingPreferenceFilterCAP
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KromerMann
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rosetta.protocols.filters._protocols_filters_
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ParallelBetaPairingPreferenceFilterCreator
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KromerMannAP
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__CPP_ContingentFilterCreator__
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rosetta.protocols.filters._protocols_filters_
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ParallelBetaPairingPreferenceFilterCreatorAP
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poseCoord
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poseCoordAP
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EtableAP
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EtableCAP
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EtableClassicIntraEnergyCreatorAP
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EtableOptionsAP
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rosetta.protocols.moves._protocols_moves_
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EtableOptionsCAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
)
__init__()
(in
BB_Pos
)
__instance_size__
(in
CountPairData_1_3
)
__CPP_DeleteChainsMoverCreator__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
__init__()
(in
BB_PosAP
)
__instance_size__
(in
CountPairData_1_3AP
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__CPP_DeleteMetalbindingAtom__
(in
rosetta.core.chemical._core_chemical_
)
__init__()
(in
BB_PosCAP
)
__instance_size__
(in
CountPairData_1_3CAP
)
__CPP_DeleteMover__
(in
rosetta.protocols.stepwise.monte_carlo.mover._protocols_stepwise_monte_carlo_mover_
)
__init__()
(in
BetaAlphaBetaMotif
)
__instance_size__
(in
EtableAtomAP
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__CPP_DeleteProperty__
(in
rosetta.core.chemical._core_chemical_
)
__init__()
(in
BetaAlphaBetaMotifAP
)
__instance_size__
(in
EtableAtomCAP
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__CPP_DeleteRegionMover__
(in
rosetta.protocols.grafting.simple_movers._protocols_grafting_simple_movers_
)
__init__()
(in
BetaAlphaBetaMotifCAP
)
__instance_size__
(in
GenericResidueConnectionData
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__CPP_DeleteRegionMoverCreator__
(in
rosetta.protocols.grafting.simple_movers._protocols_grafting_simple_movers_
)
__init__()
(in
BetaAlphaBetaMotifSet
)
__instance_size__
(in
GenericResidueConnectionDataAP
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__CPP_DeleteTerminalChi__
(in
rosetta.core.chemical._core_chemical_
)
__init__()
(in
BetaAlphaBetaMotifSetAP
)
__instance_size__
(in
GenericResidueConnectionDataCAP
)
__CPP_DeltaFilter__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
BetaAlphaBetaMotifSetCAP
)
__instance_size__
(in
TrieCountPair1BC3AP
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__CPP_DeltaFilterCreator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
DimerPairing
)
__instance_size__
(in
TrieCountPair1BC3CAP
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__CPP_DenseEnergyContainer__
(in
rosetta.core.scoring._core_scoring_
)
__init__()
(in
DimerPairingAP
)
__instance_size__
(in
TrieCountPair1BC4AP
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__CPP_DenseIGRepacker__
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
__init__()
(in
DimerPairingCAP
)
__instance_size__
(in
TrieCountPair1BC4CAP
)
__CPP_DenseNeighborConstIterator__
(in
rosetta.core.scoring._core_scoring_
)
__init__()
(in
DimerPairings
)
__instance_size__
(in
TrieCountPairAllAP
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__CPP_DenseNeighborIterator__
(in
rosetta.core.scoring._core_scoring_
)
__init__()
(in
DimerPairingsAP
)
__instance_size__
(in
TrieCountPairAllCAP
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__CPP_DensePDEdge__
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
__init__()
(in
DimerPairingsCAP
)
__instance_size__
(in
TrieCountPairGenericAP
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__CPP_DensePDNode__
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
__init__()
(in
HSSTriplet
)
__instance_size__
(in
TrieCountPairGenericCAP
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__CPP_DensityMorphingMover__
(in
rosetta.protocols.electron_density._protocols_electron_density_
)
__init__()
(in
HSSTripletAP
)
__instance_size__
(in
TrieCountPairNoneAP
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__CPP_DensityMorphingMoverCreator__
(in
rosetta.protocols.electron_density._protocols_electron_density_
)
__init__()
(in
HSSTripletCAP
)
__instance_size__
(in
TrieCountPairNoneCAP
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__CPP_DenyPdbIdFilter__
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
)
__init__()
(in
HSSTripletSet
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_T
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__CPP_DesignableResiduesFilter__
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
__init__()
(in
HSSTripletSetAP
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
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__CPP_DesignableResiduesFilterCreator__
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
__init__()
(in
HSSTripletSetCAP
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
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__CPP_DesignAroundOperation__
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
__init__()
(in
Helix
)
__instance_size__
(in
CentroidScatterAP
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__CPP_DesignAroundOperationCreator__
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
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__init__()
(in
HelixAP
)
__instance_size__
(in
CentroidScatterCAP
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__CPP_DesignMinimizeHbonds__
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
__init__()
(in
HelixCAP
)
__instance_size__
(in
FAScatterAP
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__CPP_DesignMinimizeHbondsCreator__
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
__init__()
(in
HelixPairing
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__instance_size__
(in
FAScatterCAP
)
__CPP_DesignProteinBackboneAroundDNA__
(in
rosetta.protocols.dna._protocols_dna_
)
__init__()
(in
HelixPairingAP
)
__instance_size__
(in
FiberDiffraction
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__CPP_DesignProteinBackboneAroundDNACreator__
(in
rosetta.protocols.dna._protocols_dna_
)
__init__()
(in
HelixPairingCAP
)
__instance_size__
(in
FiberDiffractionAP
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__CPP_DesignRepackMover__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
__init__()
(in
HelixPairingSet
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__instance_size__
(in
FiberDiffractionCAP
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__CPP_DesignTask__
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
__init__()
(in
HelixPairingSetAP
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__instance_size__
(in
FiberDiffractionEnergyAP
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__CPP_DesignTask_Layer__
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
__init__()
(in
HelixPairingSetCAP
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__instance_size__
(in
FiberDiffractionEnergyCAP
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__CPP_DesignTask_Normal__
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
__init__()
(in
Loop
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__instance_size__
(in
FiberDiffractionEnergyCreatorAP
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__CPP_DetectSymmetry__
(in
rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
)
__init__()
(in
LoopAP
)
__instance_size__
(in
FiberDiffractionEnergyCreatorCAP
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__CPP_DetectSymmetryMoverCreator__
(in
rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
)
__init__()
(in
LoopCAP
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__instance_size__
(in
FiberDiffractionEnergyDensAP
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__CPP_DFIRE_Energy__
(in
rosetta.core.scoring.methods.dfire._core_scoring_methods_dfire_
)
__init__()
(in
SS_Base
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__instance_size__
(in
FiberDiffractionEnergyDensCAP
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__CPP_DFIRE_EnergyCreator__
(in
rosetta.core.scoring.methods.dfire._core_scoring_methods_dfire_
)
__init__()
(in
SS_BaseAP
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__instance_size__
(in
FiberDiffractionEnergyDensCreatorAP
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__CPP_DFPMinConvergedAbsolute__
(in
rosetta.core.optimization._core_optimization_
)
__init__()
(in
SS_BaseCAP
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__instance_size__
(in
FiberDiffractionEnergyDensCreatorCAP
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__CPP_DFPMinConvergedFractional__
(in
rosetta.core.optimization._core_optimization_
)
__init__()
(in
SS_Info2
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__instance_size__
(in
FiberDiffractionLoaderAP
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__CPP_DGBindOptEData__
(in
rosetta.protocols.optimize_weights._protocols_optimize_weights_
)
__init__()
(in
SS_Info2AP
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__instance_size__
(in
FiberDiffractionLoaderCAP
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__CPP_DiagnosticData__
(in
rosetta.basic.datacache._basic_datacache_
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__init__()
(in
SS_Info2CAP
)
__instance_size__
(in
FiberDiffractionLoaderCreatorAP
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__CPP_DihedralConstraint__
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
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__init__()
(in
Sheet
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__instance_size__
(in
FiberDiffractionLoaderCreatorCAP
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__CPP_DihedralConstraintCreator__
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
__init__()
(in
SheetAP
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__instance_size__
(in
FiberDiffractionOptionsAP
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__CPP_DihedralConstraintsScore__
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
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__init__()
(in
SheetCAP
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__instance_size__
(in
FiberDiffractionOptionsCAP
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__CPP_DihedralPairConstraint__
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
__init__()
(in
SheetFoldTypeManager
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__instance_size__
(in
FiberDiffractionOptionsCreatorAP
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__CPP_DihedralPairConstraintCreator__
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
__init__()
(in
SheetFoldTypeManagerAP
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__instance_size__
(in
FiberDiffractionOptionsCreatorCAP
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__CPP_DipolarCoupling__
(in
rosetta.core.scoring._core_scoring_
)
__init__()
(in
SheetFoldTypeManagerCAP
)
__instance_size__
(in
Hankel
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__CPP_DipolarCouplingEnergy__
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
__init__()
(in
SheetSet
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__instance_size__
(in
HankelAP
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__CPP_DipolarCouplingEnergyCreator__
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
__init__()
(in
SheetSetAP
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__instance_size__
(in
HankelCAP
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__CPP_DirectReadoutEnergy__
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
__init__()
(in
SheetSetCAP
)
__instance_size__
(in
KromerMann
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__CPP_DirectReadoutEnergyCreator__
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
__init__()
(in
Strand
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__instance_size__
(in
KromerMannAP
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__CPP_DisableAntibodyRegionOperation__
(in
rosetta.protocols.antibody.task_operations._protocols_antibody_task_operations_
)
__init__()
(in
StrandAP
)
__instance_size__
(in
KromerMannCAP
)
__CPP_DisableCDRsOperation__
(in
rosetta.protocols.antibody.task_operations._protocols_antibody_task_operations_
)
__init__()
(in
StrandCAP
)
__instance_size__
(in
OneGaussianScattering
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__CPP_DisallowIfNonnative__
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
__init__()
(in
StrandPairing
)
__instance_size__
(in
OneGaussianScatteringAP
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__CPP_DisallowIfNonnativeCreator__
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
__init__()
(in
StrandPairingAP
)
__instance_size__
(in
OneGaussianScatteringCAP
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__CPP_DisallowIfNonnativeRLT__
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
__init__()
(in
StrandPairingCAP
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_T
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__CPP_DisallowIfNonnativeRLTCreator__
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
__init__()
(in
StrandPairingSet
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
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__CPP_DiscreteRandomizer__
(in
rosetta.protocols.genetic_algorithm._protocols_genetic_algorithm_
)
__init__()
(in
StrandPairingSetAP
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
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__CPP_DistanceChainbreakEnergy__
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
__init__()
(in
StrandPairingSetCAP
)
__instance_size__
(in
AmberPeriodicFuncAP
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__CPP_DistanceChainbreakEnergyCreator__
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
__init__()
(in
__CPP_SS_Info2__
)
__instance_size__
(in
AmberPeriodicFuncCAP
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__CPP_DistanceFunc__
(in
rosetta.core.scoring.custom_pair_distance._core_scoring_custom_pair_distance_
)
__init__()
(in
FlexPacker
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__instance_size__
(in
CharmmPeriodicFuncAP
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__CPP_DistancePairConstraint__
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
__init__()
(in
FlexPackerAP
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__instance_size__
(in
CharmmPeriodicFuncCAP
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__CPP_DistanceResidueNetwork__
(in
rosetta.protocols.toolbox._protocols_toolbox_
)
__init__()
(in
FlexPackerCAP
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__instance_size__
(in
CircularGeneral1D_FuncAP
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__CPP_DisulfideDistance__
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
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__init__()
(in
OtherContextScoreFunction
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__instance_size__
(in
CircularGeneral1D_FuncCAP
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__CPP_DisulfideEntropyFilter__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
OtherContextScoreFunctionAP
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__instance_size__
(in
CircularHarmonicFuncAP
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__CPP_DisulfideEntropyFilterCreator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
OtherContextScoreFunctionCAP
)
__instance_size__
(in
CircularHarmonicFuncCAP
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__CPP_DisulfideFilter__
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
__init__()
(in
__CPP_FlexPacker__
)
__instance_size__
(in
CircularPowerFuncAP
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__CPP_DisulfideFilterCreator__
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
__init__()
(in
__CPP_OtherContextScoreFunction__
)
__instance_size__
(in
CircularPowerFuncCAP
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__CPP_DisulfideIdentity__
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
__init__()
(in
FlexbbSimAnnealer
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__instance_size__
(in
CircularSigmoidalFuncAP
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__CPP_DisulfideInsertionMover__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
__init__()
(in
FlexbbSimAnnealerAP
)
__instance_size__
(in
CircularSigmoidalFuncCAP
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__CPP_DisulfideInsertionMoverCreator__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
__init__()
(in
FlexbbSimAnnealerCAP
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__instance_size__
(in
CircularSplineFuncAP
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__CPP_DisulfideMatchingEnergy__
(in
rosetta.core.scoring.disulfides._core_scoring_disulfides_
)
__init__()
(in
__CPP_FlexbbSimAnnealer__
)
__instance_size__
(in
CircularSplineFuncCAP
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__CPP_DisulfideMatchingEnergyContainer__
(in
rosetta.core.scoring.disulfides._core_scoring_disulfides_
)
__init__()
(in
FlexbbEdge
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__instance_size__
(in
ConformationXYZAP
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__CPP_DisulfideMatchingEnergyCreator__
(in
rosetta.core.scoring.disulfides._core_scoring_disulfides_
)
__init__()
(in
FlexbbEdgeAP
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__instance_size__
(in
ConformationXYZCAP
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__CPP_DisulfideMatchingNeighborConstIterator__
(in
rosetta.core.scoring.disulfides._core_scoring_disulfides_
)
__init__()
(in
FlexbbEdgeCAP
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__instance_size__
(in
ConstantFuncAP
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__CPP_DisulfideMatchingNeighborIterator__
(in
rosetta.core.scoring.disulfides._core_scoring_disulfides_
)
__init__()
(in
FlexbbIGFactory
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__instance_size__
(in
ConstantFuncCAP
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__CPP_DisulfideMover__
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
__init__()
(in
FlexbbIGFactoryAP
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__instance_size__
(in
CountViolFuncAP
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__CPP_DisulfideMoverCreator__
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
__init__()
(in
FlexbbIGFactoryCAP
)
__instance_size__
(in
CountViolFuncCAP
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__CPP_DisulfResNeighbConstIterator__
(in
rosetta.core.scoring.disulfides._core_scoring_disulfides_
)
__init__()
(in
FlexbbInteractionGraphAP
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__instance_size__
(in
EtableFuncAP
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__CPP_DisulfResNeighbIterator__
(in
rosetta.core.scoring.disulfides._core_scoring_disulfides_
)
__init__()
(in
FlexbbInteractionGraphCAP
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__instance_size__
(in
EtableFuncCAP
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__CPP_DiversifyCrmsdByClustering__
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
)
__init__()
(in
FlexbbNode
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__instance_size__
(in
FadeFuncAP
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__CPP_DiversifyCrmsdSelector__
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
)
__init__()
(in
FlexbbNodeAP
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__instance_size__
(in
FadeFuncCAP
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__CPP_DiversifyDihedralsSelector__
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
)
__init__()
(in
FlexbbNodeCAP
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__instance_size__
(in
FlatHarmonicFuncAP
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__CPP_DivideExpression__
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
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__init__()
(in
FlexbbSparseMatrixIndex
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__instance_size__
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FlatHarmonicFuncCAP
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__CPP_DME_FilterMover__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
__init__()
(in
FlexbbSparseMatrixIndexAP
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__instance_size__
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FourPointsFuncAP
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__CPP_DNA_BaseEnergy__
(in
rosetta.core.scoring.methods._core_scoring_methods_
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__init__()
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FlexbbSparseMatrixIndexCAP
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__instance_size__
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FourPointsFuncCAP
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__CPP_DNA_BaseEnergyCreator__
(in
rosetta.core.scoring.methods._core_scoring_methods_
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__init__()
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MinimalistFlexbbEdge
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__instance_size__
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Func
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__CPP_DNAChiEnergy__
(in
rosetta.core.scoring.dna._core_scoring_dna_
)
__init__()
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MinimalistFlexbbEdgeAP
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__instance_size__
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FuncAP
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__CPP_DNAChiEnergyCreator__
(in
rosetta.core.scoring.dna._core_scoring_dna_
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__init__()
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MinimalistFlexbbEdgeCAP
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__instance_size__
(in
FuncCAP
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__CPP_DnaInterfaceMinMover__
(in
rosetta.protocols.dna._protocols_dna_
)
__init__()
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MinimalistFlexbbInteractionGraph
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__instance_size__
(in
FuncFactory
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__CPP_DnaInterfaceMinMoverCreator__
(in
rosetta.protocols.dna._protocols_dna_
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__init__()
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MinimalistFlexbbInteractionGraphAP
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__instance_size__
(in
FuncFactoryAP
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__CPP_DnaInterfaceMultiStateDesign__
(in
rosetta.protocols.dna._protocols_dna_
)
__init__()
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MinimalistFlexbbInteractionGraphCAP
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__instance_size__
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FuncFactoryCAP
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__CPP_DnaInterfaceMultiStateDesignCreator__
(in
rosetta.protocols.dna._protocols_dna_
)
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MinimalistFlexbbNode
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GaussianChainDoubleFuncAP
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__CPP_DnaInterfacePacker__
(in
rosetta.protocols.dna._protocols_dna_
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MinimalistFlexbbNodeAP
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GaussianChainDoubleFuncCAP
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__CPP_DnaInterfacePackerCreator__
(in
rosetta.protocols.dna._protocols_dna_
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MinimalistFlexbbNodeCAP
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GaussianChainFuncAP
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__CPP_DNATorsionEnergy__
(in
rosetta.core.scoring.dna._core_scoring_dna_
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__init__()
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OTFFlexbbEdge
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GaussianChainFuncCAP
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__CPP_DNATorsionEnergyCreator__
(in
rosetta.core.scoring.dna._core_scoring_dna_
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OTFFlexbbEdgeAP
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__instance_size__
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GaussianChainQuadrupleFuncAP
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__CPP_DockAndRetrieveSidechains__
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
__init__()
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OTFFlexbbEdgeCAP
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__instance_size__
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GaussianChainQuadrupleFuncCAP
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__CPP_DockAndRetrieveSidechainsCreator__
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
__init__()
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OTFFlexbbInteractionGraphAP
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__instance_size__
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GaussianChainSingleFuncAP
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__CPP_DockingEnsemblePrepackProtocol__
(in
rosetta.protocols.docking._protocols_docking_
)
__init__()
(in
OTFFlexbbInteractionGraphCAP
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__instance_size__
(in
GaussianChainSingleFuncCAP
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__CPP_DockingHighRes__
(in
rosetta.protocols.docking._protocols_docking_
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rosetta.protocols.simple_filters._protocols_simple_filters_
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HBondSetAP
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rosetta.utility.excn._utility_excn_
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rosetta.protocols.pack_daemon._protocols_pack_daemon_
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rosetta.protocols.simple_filters._protocols_simple_filters_
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rosetta.protocols.simple_moves._protocols_simple_moves_
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HBCPData
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HBCountPairFunctionAP
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rosetta.protocols.matdes._protocols_matdes_
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DDPlookupAP
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rosetta.protocols.matdes._protocols_matdes_
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rosetta.core.pack.task.operation._core_pack_task_operation_
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rosetta.core.pack.task.operation._core_pack_task_operation_
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rosetta.protocols.simple_filters._protocols_simple_filters_
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BDR
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BDRAP
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BDRCAP
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rosetta.core.scoring.elec._core_scoring_elec_
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rosetta.core.scoring.methods._core_scoring_methods_
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rosetta.core.scoring.methods._core_scoring_methods_
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rosetta.core.scoring.methods._core_scoring_methods_
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rosetta.core.scoring.methods._core_scoring_methods_
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LoopScoreInfo
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rosetta.core.scoring.constraints._core_scoring_constraints_
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InvrotTreeRCGAP
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LoopScoreInfoAP
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rosetta.core.scoring.constraints._core_scoring_constraints_
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InvrotTreeRCGCAP
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rosetta.core.scoring.func._core_scoring_func_
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FaMPEnvEnergyAP
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rosetta.protocols.docking._protocols_docking_
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rosetta.protocols.filters._protocols_filters_
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rosetta.protocols.filters._protocols_filters_
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rosetta.protocols.inputter._protocols_inputter_
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rosetta.protocols.features._protocols_features_
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rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
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CompareByScoreCombinationAP
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CompareByScoreCombinationCAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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CompareQueryPosition
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rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
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CompareQueryPositionCAP
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BBDepCartBondedParametersAP
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rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
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CompareScoreComponent
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BBDepCartBondedParametersCAP
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rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
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CompareScoreComponentAP
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BBIndepCartBondedParametersAP
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rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
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CompareScoreComponentCAP
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BBIndepCartBondedParametersCAP
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rosetta.core.io.pdb._core_io_pdb_
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CompareTotalScore
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BurialEnergyAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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BurialEnergyCAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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CompareTotalScoreCAP
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BurialEnergyCreatorAP
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rosetta.protocols.jd2._protocols_jd2_
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rosetta.basic.resource_manager.locator._basic_resource_manager_locator_
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CompositeFragmentSelectorCAP
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CartBondedParametersAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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Contact
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CartBondedParametersCAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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rosetta.basic.resource_manager.locator._basic_resource_manager_locator_
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ContactCAP
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rosetta.basic.resource_manager.locator._basic_resource_manager_locator_
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rosetta.protocols.filters._protocols_filters_
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ContactCountsCAP
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CenHBEnergyAP
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rosetta.protocols.filters._protocols_filters_
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CustomScoreSelector
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CenHBEnergyCAP
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rosetta.protocols.moves._protocols_moves_
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CustomScoreSelectorCAP
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CenHBEnergyCreatorCAP
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rosetta.protocols.moves._protocols_moves_
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DenyPdbIdFilter
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CenPairEnergyAP
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rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
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CenPairEnergyCAP
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rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
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DenyPdbIdFilterCAP
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CenPairEnergyCreatorAP
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rosetta.protocols.flxbb._protocols_flxbb_
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DiversifyCrmsdByClustering
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CenPairEnergyCreatorCAP
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rosetta.protocols.flxbb._protocols_flxbb_
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DiversifyCrmsdByClusteringAP
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CenRotEnvEnergyAP
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rosetta.protocols.flxbb._protocols_flxbb_
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DiversifyCrmsdByClusteringCAP
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CenRotEnvEnergyCAP
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rosetta.protocols.ligand_docking._protocols_ligand_docking_
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DiversifyCrmsdSelector
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CenRotEnvEnergyCreatorAP
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rosetta.protocols.ligand_docking._protocols_ligand_docking_
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DiversifyCrmsdSelectorAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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DiversifyCrmsdSelectorCAP
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CenRotPairEnergyAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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DiversifyDihedralsSelector
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CenRotPairEnergyCAP
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rosetta.protocols.pockets._protocols_pockets_
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DiversifyDihedralsSelectorAP
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CenRotPairEnergyCreatorAP
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rosetta.protocols.cryst._protocols_cryst_
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DiversifyDihedralsSelectorCAP
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CenRotPairEnergyCreatorCAP
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rosetta.protocols.cryst._protocols_cryst_
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FragmentCandidate
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ChainbreakEnergyAP
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rosetta.protocols.genetic_algorithm._protocols_genetic_algorithm_
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FragmentCandidateAP
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rosetta.protocols.helical_bundle._protocols_helical_bundle_
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FragmentCandidateCAP
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ChainbreakEnergyCreatorAP
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rosetta.protocols.helical_bundle._protocols_helical_bundle_
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FragmentComparatorBase
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ChainbreakEnergyCreatorCAP
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rosetta.protocols.helical_bundle._protocols_helical_bundle_
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FragmentComparatorBaseAP
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rosetta.core.pack.task._core_pack_task_
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FragmentComparatorBaseCAP
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rosetta.core.pack.annealer._core_pack_annealer_
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FragmentPicker
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rosetta.core.pack.annealer._core_pack_annealer_
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FragmentPickerAP
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rosetta.core.pack.rotamer_set._core_pack_rotamer_set_
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FragmentPickerCAP
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ContactOrderEnergyAP
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rosetta.core.pack.annealer._core_pack_annealer_
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FragmentSelectingRule
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ContactOrderEnergyCAP
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rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
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FragmentSelectingRuleAP
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ContactOrderEnergyCreatorAP
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rosetta.protocols.kinematic_closure.pivot_pickers._protocols_kinematic_closure_pivot_pickers_
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FragmentSelectingRuleCAP
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ContactOrderEnergyCreatorCAP
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rosetta.protocols.kinematic_closure.pivot_pickers._protocols_kinematic_closure_pivot_pickers_
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GrabAllCollector
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ContextDependentLRTwoBodyEnergyAP
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rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
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GrabAllCollectorAP
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ContextDependentLRTwoBodyEnergyCAP
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rosetta.protocols.abinitio._protocols_abinitio_
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GrabAllCollectorCAP
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ContextDependentOneBodyEnergyAP
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rosetta.core.scoring.func._core_scoring_func_
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JCouplingIO
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ContextDependentOneBodyEnergyCAP
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rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
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JCouplingIOAP
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ContextDependentTwoBodyEnergyAP
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rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
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JCouplingIOCAP
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ContextDependentTwoBodyEnergyCAP
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LAMBEGO_IO
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ContextIndependentLRTwoBodyEnergyAP
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__CPP_FlexbbRotamerSets__
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rosetta.protocols.flexpack.rotamer_set._protocols_flexpack_rotamer_set_
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LAMBEGO_IOAP
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ContextIndependentLRTwoBodyEnergyCAP
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rosetta.protocols.flexpack.annealer._protocols_flexpack_annealer_
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LAMBEGO_IOCAP
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ContextIndependentOneBodyEnergyAP
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rosetta.protocols.flexpack._protocols_flexpack_
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PdbIdChunkFilter
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ContextIndependentOneBodyEnergyCAP
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rosetta.protocols.flexpep_docking._protocols_flexpep_docking_
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PdbIdChunkFilterAP
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PdbIdChunkFilterCAP
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PhiPsiTalosIO
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CustomAtomPairEnergyAP
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PhiPsiTalosIOAP
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CustomAtomPairEnergyCAP
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rosetta.protocols.membrane._protocols_membrane_
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PhiPsiTalosIOCAP
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CustomAtomPairEnergyCreatorAP
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rosetta.protocols.membrane._protocols_membrane_
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QuotaDebug
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rosetta.protocols.floppy_tail._protocols_floppy_tail_
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QuotaDebugAP
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D2H_SA_EnergyAP
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rosetta.protocols.flxbb._protocols_flxbb_
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QuotaDebugCAP
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D2H_SA_EnergyCAP
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rosetta.protocols.flxbb._protocols_flxbb_
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SidechainContactDistCutoff
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D2H_SA_EnergyCreatorAP
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rosetta.protocols.flxbb._protocols_flxbb_
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SidechainContactDistCutoffAP
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D2H_SA_EnergyCreatorCAP
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rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
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DNA_BaseEnergyAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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DNA_BaseEnergyCAP
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rosetta.protocols.topology_broker._protocols_topology_broker_'
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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DNA_BaseEnergyCreatorAP
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rosetta.protocols.abinitio._protocols_abinitio_
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DNA_BaseEnergyCreatorCAP
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rosetta.protocols.loops._protocols_loops_
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TorsionBinIO
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DipolarCouplingEnergyAP
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rosetta.protocols.loops._protocols_loops_
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TorsionBinIOAP
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DipolarCouplingEnergyCAP
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rosetta.protocols.hybridization._protocols_hybridization_
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TorsionBinIOCAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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VallChunk
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VallChunkAP
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VallChunkFilter
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DirectReadoutEnergyCreatorAP
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rosetta.core.fragment._core_fragment_
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VallChunkFilterAP
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DirectReadoutEnergyCreatorCAP
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rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
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VallChunkFilterCAP
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DistanceChainbreakEnergyAP
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VallProvider
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DistanceChainbreakEnergyCAP
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rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
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VallProviderCAP
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rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
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VallResidueCAP
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__CPP_BoundedCollector
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rosetta.protocols.abinitio._protocols_abinitio_
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__CPP_HeavyAtomFilterCreator__
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rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
__init__()
(in
FragmentDMECAP
)
__instance_size__
(in
MembraneEnvPenaltiesCAP
)
__CPP_HedgeArchive__
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
__init__()
(in
FragmentScoreManager
)
__instance_size__
(in
MembraneEnvPenaltiesCreatorAP
)
__CPP_HelicalGaussianMover__
(in
rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
)
__init__()
(in
FragmentScoreManagerAP
)
__instance_size__
(in
MembraneEnvPenaltiesCreatorCAP
)
__CPP_HelixBundleFeatures__
(in
rosetta.protocols.features.helixAssembly._protocols_features_helixAssembly_
)
__init__()
(in
FragmentScoreManagerCAP
)
__instance_size__
(in
MembraneEnvSmoothEnergyAP
)
__CPP_HelixBundleFeaturesCreator__
(in
rosetta.protocols.features.helixAssembly._protocols_features_helixAssembly_
)
__init__()
(in
FragmentScoreMap
)
__instance_size__
(in
MembraneEnvSmoothEnergyCAP
)
__CPP_HelixCapFeatures__
(in
rosetta.protocols.features._protocols_features_
)
__init__()
(in
FragmentScoreMapAP
)
__instance_size__
(in
MembraneEnvSmoothEnergyCreatorAP
)
__CPP_HelixCapFeaturesCreator__
(in
rosetta.protocols.features._protocols_features_
)
__init__()
(in
FragmentScoreMapCAP
)
__instance_size__
(in
MembraneEnvSmoothEnergyCreatorCAP
)
__CPP_HelixKinkFilter__
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
__init__()
(in
FragmentScoringMethod
)
__instance_size__
(in
MembraneLipoAP
)
__CPP_HelixKinkFilterCreator__
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
__init__()
(in
FragmentScoringMethodAP
)
__instance_size__
(in
MembraneLipoCAP
)
__CPP_HelixPairingFilter__
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
__init__()
(in
FragmentScoringMethodCAP
)
__instance_size__
(in
MembraneLipoCreatorAP
)
__CPP_HelixPairingFilterCreator__
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
__init__()
(in
GunnCost
)
__instance_size__
(in
MembraneLipoCreatorCAP
)
__CPP_HighResDocker__
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
__init__()
(in
GunnCostAP
)
__instance_size__
(in
MissingEnergyAP
)
__CPP_HighResDockerCreator__
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
__init__()
(in
GunnCostCAP
)
__instance_size__
(in
MissingEnergyCAP
)
__CPP_HolesEnergy__
(in
rosetta.core.scoring.packing._core_scoring_packing_
)
__init__()
(in
GunnCostScore
)
__instance_size__
(in
MissingEnergyCreatorAP
)
__CPP_HolesEnergyCreator__
(in
rosetta.core.scoring.packing._core_scoring_packing_
)
__init__()
(in
GunnCostScoreAP
)
__instance_size__
(in
MissingEnergyCreatorCAP
)
__CPP_HolesEnergyRes__
(in
rosetta.core.scoring.packing._core_scoring_packing_
)
__init__()
(in
GunnCostScoreCAP
)
__instance_size__
(in
NMerPSSMEnergyAP
)
__CPP_HolesFilter__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
GunnTuple
)
__instance_size__
(in
NMerPSSMEnergyCAP
)
__CPP_HolesFilterCreator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
GunnTupleAP
)
__instance_size__
(in
NMerPSSMEnergyCreatorAP
)
__CPP_HotspotDisjointedFoldTreeMover__
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
__init__()
(in
GunnTupleCAP
)
__instance_size__
(in
NMerPSSMEnergyCreatorCAP
)
__CPP_HotspotDisjointedFoldTreeMoverCreator__
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
__init__()
(in
HydrophobicityProfileSimilarity
)
__instance_size__
(in
NMerRefEnergyAP
)
__CPP_HotspotHasherMover__
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
__init__()
(in
HydrophobicityProfileSimilarityAP
)
__instance_size__
(in
NMerRefEnergyCAP
)
__CPP_HotspotHasherMoverCreator__
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
__init__()
(in
HydrophobicityProfileSimilarityCAP
)
__instance_size__
(in
NMerRefEnergyCreatorAP
)
__CPP_HPatchEnergy__
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
__init__()
(in
HydrophobicitySimilarity
)
__instance_size__
(in
NMerRefEnergyCreatorCAP
)
__CPP_HPatchEnergyCreator__
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
__init__()
(in
HydrophobicitySimilarityAP
)
__instance_size__
(in
NMerSVMEnergyAP
)
__CPP_HSSTripletFilter__
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
__init__()
(in
HydrophobicitySimilarityCAP
)
__instance_size__
(in
NMerSVMEnergyCAP
)
__CPP_HSSTripletFilterCreator__
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
__init__()
(in
InterbondAngleScore
)
__instance_size__
(in
NMerSVMEnergyCreatorAP
)
__CPP_HybridizeProtocol__
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
__init__()
(in
InterbondAngleScoreAP
)
__instance_size__
(in
NMerSVMEnergyCreatorCAP
)
__CPP_HybridizeProtocolCreator__
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
__init__()
(in
InterbondAngleScoreCAP
)
__instance_size__
(in
OmegaTetherEnergyAP
)
__CPP_HybridVDW_Energy__
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
__init__()
(in
JCoupling
)
__instance_size__
(in
OmegaTetherEnergyCAP
)
__CPP_HybridVDW_EnergyCreator__
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
__init__()
(in
JCouplingAP
)
__instance_size__
(in
OmegaTetherEnergyCreatorAP
)
__CPP_HydrophobicityProfileSimilarity__
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
__init__()
(in
JCouplingCAP
)
__instance_size__
(in
OmegaTetherEnergyCreatorCAP
)
__CPP_HydrophobicitySimilarity__
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
__init__()
(in
LAMBEGO_Similarity
)
__instance_size__
(in
OneBodyEnergyAP
)
__CPP_IdealizeHelicesMover__
(in
rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
)
__init__()
(in
LAMBEGO_SimilarityAP
)
__instance_size__
(in
OneBodyEnergyCAP
)
__CPP_IdealizeHelicesMoverCreator__
(in
rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
)
__init__()
(in
LAMBEGO_SimilarityCAP
)
__instance_size__
(in
OtherPoseEnergyAP
)
__CPP_IdealizeMover__
(in
rosetta.protocols.idealize._protocols_idealize_
)
__init__()
(in
MakeABEGO_SS_Score
)
__instance_size__
(in
OtherPoseEnergyCAP
)
__CPP_IdealizeMoverCreator__
(in
rosetta.protocols.idealize._protocols_idealize_
)
__init__()
(in
MakeABEGO_SS_ScoreAP
)
__instance_size__
(in
OtherPoseEnergyCreatorAP
)
__CPP_IdealizeNonPhiPsi__
(in
rosetta.protocols.kinematic_closure.perturbers._protocols_kinematic_closure_perturbers_
)
__init__()
(in
MakeABEGO_SS_ScoreCAP
)
__instance_size__
(in
OtherPoseEnergyCreatorCAP
)
__CPP_IdentityEval__
(in
rosetta.core.fragment.picking_old.vall.eval._core_fragment_picking_old_vall_eval_
)
__init__()
(in
MakeAmbigCSScore
)
__instance_size__
(in
PBLifetimeCacheAP
)
__CPP_IdentityFunc__
(in
rosetta.core.scoring.func._core_scoring_func_
)
__init__()
(in
MakeAmbigCSScoreAP
)
__instance_size__
(in
PBLifetimeCacheCAP
)
__CPP_IfMover__
(in
rosetta.protocols.moves._protocols_moves_
)
__init__()
(in
MakeAmbigCSScoreCAP
)
__instance_size__
(in
P_AA_EnergyAP
)
__CPP_IfMoverCreator__
(in
rosetta.protocols.moves._protocols_moves_
)
__init__()
(in
MakeAtomPairConstraintsScore
)
__instance_size__
(in
P_AA_EnergyCAP
)
__CPP_IfThenFilter__
(in
rosetta.protocols.filters._protocols_filters_
)
__init__()
(in
MakeAtomPairConstraintsScoreAP
)
__instance_size__
(in
P_AA_EnergyCreatorAP
)
__CPP_IfThenFilterCreator__
(in
rosetta.protocols.filters._protocols_filters_
)
__init__()
(in
MakeAtomPairConstraintsScoreCAP
)
__instance_size__
(in
P_AA_EnergyCreatorCAP
)
__CPP_IGEdgeReweighter__
(in
rosetta.core.pack.task._core_pack_task_
)
__init__()
(in
MakeBFactor
)
__instance_size__
(in
P_AA_pp_EnergyAP
)
__CPP_IGLigandDesignEdgeUpweighter__
(in
rosetta.protocols.toolbox._protocols_toolbox_
)
__init__()
(in
MakeBFactorAP
)
__instance_size__
(in
P_AA_pp_EnergyCAP
)
__CPP_IgnoreSubsetConstraintSet__
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
__init__()
(in
MakeBFactorCAP
)
__instance_size__
(in
P_AA_pp_EnergyCreatorAP
)
__CPP_ImportPoseOptions__
(in
rosetta.core.import_pose._core_import_pose_
)
__init__()
(in
MakeCSScore
)
__instance_size__
(in
P_AA_pp_EnergyCreatorCAP
)
__CPP_ImportPoseOptionsCreator__
(in
rosetta.core.import_pose._core_import_pose_
)
__init__()
(in
MakeCSScoreAP
)
__instance_size__
(in
PackStatEnergyAP
)
__CPP_ImportUnboundRotamersOperation__
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
__init__()
(in
MakeCSScoreCAP
)
__instance_size__
(in
PackStatEnergyCAP
)
__CPP_ImportUnboundRotamersOperationCreator__
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
__init__()
(in
MakeConstScore
)
__instance_size__
(in
PackStatEnergyCreatorAP
)
__CPP_IncludeCurrent__
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
__init__()
(in
MakeConstScoreAP
)
__instance_size__
(in
PackStatEnergyCreatorCAP
)
__CPP_IncludeCurrentCreator__
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
__init__()
(in
MakeConstScoreCAP
)
__instance_size__
(in
PairEnergyAP
)
__CPP_IndependentBBTorsionSRFD__
(in
rosetta.core.fragment._core_fragment_
)
__init__()
(in
MakeDihedralConstraintsScore
)
__instance_size__
(in
PairEnergyCAP
)
__CPP_InitializeByBins__
(in
rosetta.protocols.simple_moves.bin_transitions._protocols_simple_moves_bin_transitions_
)
__init__()
(in
MakeDihedralConstraintsScoreAP
)
__instance_size__
(in
PairEnergyCreatorAP
)
__CPP_InitializeByBinsCreator__
(in
rosetta.protocols.simple_moves.bin_transitions._protocols_simple_moves_bin_transitions_
)
__init__()
(in
MakeDihedralConstraintsScoreCAP
)
__instance_size__
(in
PairEnergyCreatorCAP
)
__CPP_InitializeExtraRotsFromCommandline__
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
__init__()
(in
MakeDisulfideDistance
)
__instance_size__
(in
PeptideBondEnergyAP
)
__CPP_InitializeExtraRotsFromCommandlineCreator__
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
__init__()
(in
MakeDisulfideDistanceAP
)
__instance_size__
(in
PeptideBondEnergyCAP
)
__CPP_InitializeFromCommandline__
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
__init__()
(in
MakeDisulfideDistanceCAP
)
__instance_size__
(in
PeptideBondEnergyCreatorAP
)
__CPP_InitializeFromCommandlineCreator__
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
__init__()
(in
MakeDisulfideIdentity
)
__instance_size__
(in
PeptideBondEnergyCreatorCAP
)
__CPP_Inline_File_Provider_Hook__
(in
rosetta.utility._utility_
)
__init__()
(in
MakeDisulfideIdentityAP
)
__instance_size__
(in
PoissonBoltzmannEnergyAP
)
__CPP_InnerJob__
(in
rosetta.protocols.jd2._protocols_jd2_
)
__init__()
(in
MakeDisulfideIdentityCAP
)
__instance_size__
(in
PoissonBoltzmannEnergyCAP
)
__CPP_InputStreamStepWiseSampler__
(in
rosetta.protocols.stepwise.sampler.input_streams._protocols_stepwise_sampler_input_streams_
)
__init__()
(in
MakeFragmentAllAtomCrmsd
)
__instance_size__
(in
PoissonBoltzmannEnergyCreatorAP
)
__CPP_Inputter__
(in
rosetta.protocols.inputter._protocols_inputter_
)
__init__()
(in
MakeFragmentAllAtomCrmsdAP
)
__instance_size__
(in
PoissonBoltzmannEnergyCreatorCAP
)
__CPP_InputterStream__
(in
rosetta.protocols.inputter._protocols_inputter_
)
__init__()
(in
MakeFragmentAllAtomCrmsdCAP
)
__instance_size__
(in
ProClosureEnergyAP
)
__CPP_InsertChunkMover__
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
__init__()
(in
MakeFragmentChunkCrms
)
__instance_size__
(in
ProClosureEnergyCAP
)
__CPP_InsertPoseIntoPoseMover__
(in
rosetta.protocols.grafting.simple_movers._protocols_grafting_simple_movers_
)
__init__()
(in
MakeFragmentChunkCrmsAP
)
__instance_size__
(in
ProClosureEnergyCreatorAP
)
__CPP_InsertPoseIntoPoseMoverCreator__
(in
rosetta.protocols.grafting.simple_movers._protocols_grafting_simple_movers_
)
__init__()
(in
MakeFragmentChunkCrmsCAP
)
__instance_size__
(in
ProClosureEnergyCreatorCAP
)
__CPP_InSetExpression__
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
__init__()
(in
MakeFragmentCrmsd
)
__instance_size__
(in
ProQ_EnergyAP
)
__CPP_IntegrationTestBreaker__
(in
rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
)
__init__()
(in
MakeFragmentCrmsdAP
)
__instance_size__
(in
ProQ_EnergyCAP
)
__CPP_InteractingRotamerExplosion__
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
__init__()
(in
MakeFragmentCrmsdCAP
)
__instance_size__
(in
ProQ_EnergyCreatorAP
)
__CPP_InteractingRotamerExplosionCreator__
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
__init__()
(in
MakeFragmentCrmsdResDepth
)
__instance_size__
(in
ProQ_EnergyCreatorCAP
)
__CPP_InterbondAngleScore__
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
__init__()
(in
MakeFragmentCrmsdResDepthAP
)
__instance_size__
(in
PyEnergyMethodRegistrator
)
__CPP_InterchainEnvEnergy__
(in
rosetta.protocols.scoring.methods._protocols_scoring_methods_
)
__init__()
(in
MakeFragmentCrmsdResDepthCAP
)
__instance_size__
(in
PyEnergyMethodRegistratorAP
)
__CPP_InterchainEnvEnergyCreator__
(in
rosetta.protocols.scoring.methods._protocols_scoring_methods_
)
__init__()
(in
MakeFragmentDME
)
__instance_size__
(in
PyEnergyMethodRegistratorCAP
)
__CPP_InterchainPairEnergy__
(in
rosetta.protocols.scoring.methods._protocols_scoring_methods_
)
__init__()
(in
MakeFragmentDMEAP
)
__instance_size__
(in
RG_Energy_FastAP
)
__CPP_InterchainPairEnergyCreator__
(in
rosetta.protocols.scoring.methods._protocols_scoring_methods_
)
__init__()
(in
MakeFragmentDMECAP
)
__instance_size__
(in
RG_Energy_FastCAP
)
__CPP_InterfaceAnalyzerMover__
(in
rosetta.protocols.analysis._protocols_analysis_
)
__init__()
(in
MakeFragmentScoringMethod
)
__instance_size__
(in
RG_Energy_FastCreatorAP
)
__CPP_InterfaceAnalyzerMoverCreator__
(in
rosetta.protocols.analysis._protocols_analysis_
)
__init__()
(in
MakeFragmentScoringMethodAP
)
__instance_size__
(in
RG_Energy_FastCreatorCAP
)
__CPP_InterfaceBindingEnergyDensityFilter__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
MakeFragmentScoringMethodCAP
)
__instance_size__
(in
RG_LocalEnergyAP
)
__CPP_InterfaceBindingEnergyDensityFilterCreator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
MakeGunnCostScore
)
__instance_size__
(in
RG_LocalEnergyCAP
)
__CPP_InterfaceBuilderLoader__
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
__init__()
(in
MakeGunnCostScoreAP
)
__instance_size__
(in
RG_LocalEnergyCreatorAP
)
__CPP_InterfaceBuilderLoaderCreator__
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
__init__()
(in
MakeGunnCostScoreCAP
)
__instance_size__
(in
RG_LocalEnergyCreatorCAP
)
__CPP_InterfaceFeatures__
(in
rosetta.protocols.features._protocols_features_
)
__init__()
(in
MakeHydrophobicityProfileSimilarity
)
__instance_size__
(in
RG_Local_MinDataAP
)
__CPP_InterfaceFeaturesCreator__
(in
rosetta.protocols.features._protocols_features_
)
__init__()
(in
MakeHydrophobicityProfileSimilarityAP
)
__instance_size__
(in
RG_Local_MinDataCAP
)
__CPP_InterfaceHolesFilter__
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
__init__()
(in
MakeHydrophobicityProfileSimilarityCAP
)
__instance_size__
(in
RG_MinDataAP
)
__CPP_InterfaceHolesFilterCreator__
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
__init__()
(in
MakeHydrophobicitySimilarity
)
__instance_size__
(in
RG_MinDataCAP
)
__CPP_InterfaceInfo__
(in
rosetta.protocols.scoring._protocols_scoring_
)
__init__()
(in
MakeHydrophobicitySimilarityAP
)
__instance_size__
(in
RMS_EnergyAP
)
__CPP_InterfacePackingFilter__
(in
rosetta.protocols.matdes._protocols_matdes_
)
__init__()
(in
MakeHydrophobicitySimilarityCAP
)
__instance_size__
(in
RMS_EnergyCAP
)
__CPP_InterfacePackingFilterCreator__
(in
rosetta.protocols.matdes._protocols_matdes_
)
__init__()
(in
MakeInterbondAngleScore
)
__instance_size__
(in
RMS_EnergyCreatorAP
)
__CPP_InterfaceRecapitulationMover__
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
__init__()
(in
MakeInterbondAngleScoreAP
)
__instance_size__
(in
RMS_EnergyCreatorCAP
)
__CPP_InterfaceRecapitulationMoverCreator__
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
__init__()
(in
MakeInterbondAngleScoreCAP
)
__instance_size__
(in
Rama2BOffsetEnergyAP
)
__CPP_InterfaceSasaFilter__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
MakeJCoupling
)
__instance_size__
(in
Rama2BOffsetEnergyCAP
)
__CPP_InterfaceSasaFilterCreator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
MakeJCouplingAP
)
__instance_size__
(in
Rama2BOffsetEnergyCreatorAP
)
__CPP_InterfaceScoreCalculator__
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
__init__()
(in
MakeJCouplingCAP
)
__instance_size__
(in
Rama2BOffsetEnergyCreatorCAP
)
__CPP_InterfaceScoreCalculatorCreator__
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
__init__()
(in
MakeLAMBEGO_Similarity
)
__instance_size__
(in
RamachandranEnergy2BAP
)
__CPP_InterfaceSidechainMinMover__
(in
rosetta.protocols.docking._protocols_docking_
)
__init__()
(in
MakeLAMBEGO_SimilarityAP
)
__instance_size__
(in
RamachandranEnergy2BCAP
)
__CPP_InterGroupInterfaceByVectorSelector__
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
)
__init__()
(in
MakeLAMBEGO_SimilarityCAP
)
__instance_size__
(in
RamachandranEnergy2BCreatorAP
)
__CPP_InterGroupInterfaceByVectorSelectorCreator__
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
)
__init__()
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MakeMidPhiOut
)
__instance_size__
(in
RamachandranEnergy2BCreatorCAP
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__CPP_InterlockAroma__
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
__init__()
(in
MakeMidPhiOutAP
)
__instance_size__
(in
RamachandranEnergyAP
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__CPP_InterlockingAromaFilter__
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
__init__()
(in
MakeMidPhiOutCAP
)
__instance_size__
(in
RamachandranEnergyCAP
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__CPP_InterlockingAromaFilterCreator__
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
__init__()
(in
MakeMidPsiOut
)
__instance_size__
(in
RamachandranEnergyCreatorAP
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__CPP_IntermolEnergy__
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
__init__()
(in
MakeMidPsiOutAP
)
__instance_size__
(in
RamachandranEnergyCreatorCAP
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__CPP_IntermolEnergyCreator__
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
__init__()
(in
MakeMidPsiOutCAP
)
__instance_size__
(in
ReferenceEnergyAP
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__CPP_Interpolator__
(in
rosetta.numeric.interpolation.spline._numeric_interpolation_spline_
)
__init__()
(in
MakePCS_FragDistance
)
__instance_size__
(in
ReferenceEnergyCAP
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__CPP_InterRepeatContactFilter__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
MakePCS_FragDistanceAP
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__instance_size__
(in
ReferenceEnergyCreatorAP
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__CPP_InterRepeatContactFilterCreator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
MakePCS_FragDistanceCAP
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__instance_size__
(in
ReferenceEnergyCreatorCAP
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__CPP_IntraRepeatContactFilter__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
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MakePartialSecondarySimilarity
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__instance_size__
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ReferenceEnergyNoncanonicalAP
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__CPP_IntraRepeatContactFilterCreator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
MakePartialSecondarySimilarityAP
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__instance_size__
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ReferenceEnergyNoncanonicalCAP
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__CPP_InvGeometricFunc__
(in
rosetta.protocols.moves._protocols_moves_
)
__init__()
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MakePartialSecondarySimilarityCAP
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__instance_size__
(in
ReferenceEnergyNoncanonicalCreatorAP
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__CPP_Invoker__
(in
rosetta.core.scoring.etable.count_pair._core_scoring_etable_count_pair_
)
__init__()
(in
MakePhi
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__instance_size__
(in
ReferenceEnergyNoncanonicalCreatorCAP
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__CPP_InvrotTree__
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
__init__()
(in
MakePhiAP
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__instance_size__
(in
ResidualDipolarCouplingEnergyAP
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__CPP_InvrotTreeNode__
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
__init__()
(in
MakePhiCAP
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__instance_size__
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ResidualDipolarCouplingEnergyCAP
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__CPP_InvrotTreeNodeBase__
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
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__init__()
(in
MakePhiPsiRmsd
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__instance_size__
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ResidualDipolarCouplingEnergyCreatorAP
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__CPP_IRmsdFilter__
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
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__init__()
(in
MakePhiPsiRmsdAP
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__instance_size__
(in
ResidualDipolarCouplingEnergyCreatorCAP
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__CPP_IRmsdFilterCreator__
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
__init__()
(in
MakePhiPsiRmsdCAP
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__instance_size__
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ResidualDipolarCouplingEnergy_RohlAP
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__CPP_IsProteinCAPredicate__
(in
rosetta.core.scoring._core_scoring_
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__init__()
(in
MakePhiPsiSquareWell
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__instance_size__
(in
ResidualDipolarCouplingEnergy_RohlCAP
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__CPP_ITEExpression__
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
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__init__()
(in
MakePhiPsiSquareWellAP
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__instance_size__
(in
ResidualDipolarCouplingEnergy_RohlCreatorAP
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__CPP_IteratedConvergenceMover__
(in
rosetta.protocols.moves._protocols_moves_
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__init__()
(in
MakePhiPsiSquareWellCAP
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__instance_size__
(in
ResidualDipolarCouplingEnergy_RohlCreatorCAP
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__CPP_IteratedConvergenceMoverCreator__
(in
rosetta.protocols.moves._protocols_moves_
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__init__()
(in
MakeProfileScore
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__instance_size__
(in
ResidueCartBondedParameters
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__CPP_IterativeAbrelax__
(in
rosetta.protocols.abinitio._protocols_abinitio_
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__init__()
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MakeProfileScoreAP
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__instance_size__
(in
ResidueCartBondedParametersAP
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__CPP_IterativeBase__
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
__init__()
(in
MakeProfileScoreBlosum62
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__instance_size__
(in
ResidueCartBondedParametersCAP
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__CPP_IterativeCentroid__
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
__init__()
(in
MakeProfileScoreBlosum62AP
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__instance_size__
(in
SA_EnergyAP
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__CPP_IterativeFullatom__
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
__init__()
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MakeProfileScoreBlosum62CAP
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__instance_size__
(in
SA_EnergyCAP
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__CPP_IterativeVectorExpression__
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
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__init__()
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MakeProfileScoreCAP
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__instance_size__
(in
SA_EnergyCreatorAP
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__CPP_JCoupling__
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
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__init__()
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MakeProfileScoreDistWeight
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__instance_size__
(in
SA_EnergyCreatorCAP
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__CPP_JD2ResourceManagerJobInputter__
(in
rosetta.protocols.jd2._protocols_jd2_
)
__init__()
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MakeProfileScoreDistWeightAP
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__instance_size__
(in
SecondaryStructureEnergyAP
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__CPP_JD2ResourceManagerJobInputterCreator__
(in
rosetta.protocols.jd2._protocols_jd2_
)
__init__()
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MakeProfileScoreDistWeightCAP
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__instance_size__
(in
SecondaryStructureEnergyCAP
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__CPP_Job__
(in
rosetta.protocols.jd2._protocols_jd2_
)
__init__()
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MakeProfileScoreL1
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__instance_size__
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SecondaryStructureEnergyCreatorAP
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__CPP_JobDataFeatures__
(in
rosetta.protocols.features._protocols_features_
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__init__()
(in
MakeProfileScoreL1AP
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__instance_size__
(in
SecondaryStructureEnergyCreatorCAP
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__CPP_JobDataFeaturesCreator__
(in
rosetta.protocols.features._protocols_features_
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__init__()
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MakeProfileScoreL1CAP
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__instance_size__
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SequenceDependentRefEnergyAP
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__CPP_JobInputter__
(in
rosetta.protocols.jd2._protocols_jd2_
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__init__()
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MakeProfileScoreStructL1
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__instance_size__
(in
SequenceDependentRefEnergyCAP
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__CPP_JobInputterCreator__
(in
rosetta.protocols.jd2._protocols_jd2_
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__init__()
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MakeProfileScoreStructL1AP
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__instance_size__
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SequenceDependentRefEnergyCreatorAP
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__CPP_JobOptions__
(in
rosetta.basic.resource_manager._basic_resource_manager_
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__init__()
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MakeProfileScoreStructL1CAP
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__instance_size__
(in
SequenceDependentRefEnergyCreatorCAP
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__CPP_JobOutputter__
(in
rosetta.protocols.jd2._protocols_jd2_
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__init__()
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MakeProfileScoreSubMatrix
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__instance_size__
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ShortRangeTwoBodyEnergyAP
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__CPP_JobOutputterCreator__
(in
rosetta.protocols.jd2._protocols_jd2_
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__init__()
(in
MakeProfileScoreSubMatrixAP
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__instance_size__
(in
ShortRangeTwoBodyEnergyCAP
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__CPP_JobOutputterObserver__
(in
rosetta.protocols.jd2._protocols_jd2_
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__init__()
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MakeProfileScoreSubMatrixCAP
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__instance_size__
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SingletonBase_T_core_chemical_ChemicalManager_T
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__CPP_JointScore__
(in
rosetta.protocols.sic_dock._protocols_sic_dock_
)
__init__()
(in
MakeProlinePhiScore
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__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
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__CPP_JointSequenceOperation__
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
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__init__()
(in
MakeProlinePhiScoreAP
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__instance_size__
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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__CPP_JointSequenceOperationCreator__
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
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__init__()
(in
MakeProlinePhiScoreCAP
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__instance_size__
(in
SingletonBase_T_core_scoring_ScoringManager_T
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__CPP_JScoreEvaluator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
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__init__()
(in
MakePsi
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__instance_size__
(in
SingletonBase_T_core_scoring_ScoringManager_TAP
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__CPP_JScoreEvaluatorCreator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
MakePsiAP
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__instance_size__
(in
SingletonBase_T_core_scoring_ScoringManager_TCAP
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__CPP_JSON_RPC__
(in
rosetta.protocols.rpc._protocols_rpc_
)
__init__()
(in
MakePsiCAP
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__instance_size__
(in
SmoothCenPairEnergyAP
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__CPP_JumpClaim__
(in
rosetta.protocols.environment.claims._protocols_environment_claims_
)
__init__()
(in
MakeRDCScore
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__instance_size__
(in
SmoothCenPairEnergyCAP
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__CPP_JumpClaim__
(in
rosetta.protocols.topology_broker.claims._protocols_topology_broker_claims_
)
__init__()
(in
MakeRDCScoreAP
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__instance_size__
(in
SmoothCenPairEnergyCreatorAP
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__CPP_JumpDownstreamSelector__
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
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__init__()
(in
MakeRDCScoreCAP
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__instance_size__
(in
SmoothCenPairEnergyCreatorCAP
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__CPP_JumpDownstreamSelectorCreator__
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
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__init__()
(in
MakeRamaScore
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__instance_size__
(in
SmoothEnvEnergyAP
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__CPP_JumpEvaluator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
MakeRamaScoreAP
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__instance_size__
(in
SmoothEnvEnergyCAP
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__CPP_JumpingFoldConstraintsWrapper__
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
__init__()
(in
MakeRamaScoreCAP
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__instance_size__
(in
SmoothEnvEnergyCreatorAP
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__CPP_JumpingFrame__
(in
rosetta.core.fragment._core_fragment_
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__init__()
(in
MakeScoreEValuator
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__instance_size__
(in
SmoothEnvEnergyCreatorCAP
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__CPP_JumpNrEvaluator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
MakeScoreEValuatorAP
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__instance_size__
(in
SuckerEnergyAP
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__CPP_JumpNrEvaluatorCreator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
MakeScoreEValuatorCAP
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__instance_size__
(in
SuckerEnergyCAP
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__CPP_JumpOutMover__
(in
rosetta.protocols.moves._protocols_moves_
)
__init__()
(in
MakeSecondaryIdentity
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__instance_size__
(in
SuckerEnergyCreatorAP
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__CPP_JumpRotamerSidechainMover__
(in
rosetta.protocols.simple_moves.sidechain_moves._protocols_simple_moves_sidechain_moves_
)
__init__()
(in
MakeSecondaryIdentityAP
)
__instance_size__
(in
SuckerEnergyCreatorCAP
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__CPP_JumpRotamerSidechainMoverCreator__
(in
rosetta.protocols.simple_moves.sidechain_moves._protocols_simple_moves_sidechain_moves_
)
__init__()
(in
MakeSecondaryIdentityCAP
)
__instance_size__
(in
SymmetricLigandEnergyAP
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__CPP_JumpSampleData__
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
__init__()
(in
MakeSecondarySimilarity
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__instance_size__
(in
SymmetricLigandEnergyCAP
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__CPP_JumpSampleDataCreator__
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
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__init__()
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MakeSecondarySimilarityAP
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__instance_size__
(in
SymmetricLigandEnergyCreatorAP
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__CPP_JumpSelector__
(in
rosetta.protocols.jumping._protocols_jumping_
)
__init__()
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MakeSecondarySimilarityCAP
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__instance_size__
(in
SymmetricLigandEnergyCreatorCAP
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__CPP_JumpSetup__
(in
rosetta.protocols.jumping._protocols_jumping_
)
__init__()
(in
MakeSequenceIdentity
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__instance_size__
(in
TwoBodyEnergyAP
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__CPP_JumpsFromAllPairings__
(in
rosetta.protocols.jumping._protocols_jumping_
)
__init__()
(in
MakeSequenceIdentityAP
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__instance_size__
(in
TwoBodyEnergyCAP
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__CPP_JumpStepWiseSampler__
(in
rosetta.protocols.stepwise.sampler._protocols_stepwise_sampler_
)
__init__()
(in
MakeSequenceIdentityCAP
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__instance_size__
(in
UnfoldedStateEnergyAP
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__CPP_JumpUpstreamSelector__
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
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__init__()
(in
MakeSolventAccessibility
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__instance_size__
(in
UnfoldedStateEnergyCAP
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__CPP_JumpUpstreamSelectorCreator__
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
)
__init__()
(in
MakeSolventAccessibilityAP
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__instance_size__
(in
UnfoldedStateEnergyCreatorAP
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__CPP_KarplusFunc__
(in
rosetta.core.scoring.func._core_scoring_func_
)
__init__()
(in
MakeSolventAccessibilityCAP
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__instance_size__
(in
UnfoldedStateEnergyCreatorCAP
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__CPP_KCluster__
(in
rosetta.protocols.toolbox._protocols_toolbox_
)
__init__()
(in
MakeTalosSSSimilarity
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__instance_size__
(in
WaterAdductHBondEnergyAP
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__CPP_KeepRegionMover__
(in
rosetta.protocols.grafting.simple_movers._protocols_grafting_simple_movers_
)
__init__()
(in
MakeTalosSSSimilarityAP
)
__instance_size__
(in
WaterAdductHBondEnergyCAP
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__CPP_KeepRegionMoverCreator__
(in
rosetta.protocols.grafting.simple_movers._protocols_grafting_simple_movers_
)
__init__()
(in
MakeTalosSSSimilarityCAP
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__instance_size__
(in
WaterAdductHBondEnergyCreatorAP
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__CPP_KicMover__
(in
rosetta.protocols.kinematic_closure._protocols_kinematic_closure_
)
__init__()
(in
MakeTorsionBinSimilarity
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__instance_size__
(in
WaterAdductHBondEnergyCreatorCAP
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__CPP_KicMoverCreator__
(in
rosetta.protocols.kinematic_closure._protocols_kinematic_closure_
)
__init__()
(in
MakeTorsionBinSimilarityAP
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__instance_size__
(in
WaterAdductIntraEnergyAP
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__CPP_KinematicAbinitio__
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
__init__()
(in
MakeTorsionBinSimilarityCAP
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__instance_size__
(in
WaterAdductIntraEnergyCAP
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__CPP_KinematicControl__
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
__init__()
(in
MidPhiOut
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__instance_size__
(in
WaterAdductIntraEnergyCreatorAP
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__CPP_KinematicMover__
(in
rosetta.protocols.loops.loop_closure.kinematic_closure._protocols_loops_loop_closure_kinematic_closure_
)
__init__()
(in
MidPhiOutAP
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__instance_size__
(in
WaterAdductIntraEnergyCreatorCAP
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__CPP_KinematicPerturber__
(in
rosetta.protocols.loops.loop_closure.kinematic_closure._protocols_loops_loop_closure_kinematic_closure_
)
__init__()
(in
MidPhiOutCAP
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__instance_size__
(in
WaterBuilder
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__CPP_KinematicTaskControl__
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
__init__()
(in
MidPsiOut
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__instance_size__
(in
WaterBuilderAP
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__CPP_KinematicWrapper__
(in
rosetta.protocols.loops.loop_closure.kinematic_closure._protocols_loops_loop_closure_kinematic_closure_
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__init__()
(in
MidPsiOutAP
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__instance_size__
(in
WaterBuilderCAP
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__CPP_KinFunGroupTK__
(in
rosetta.protocols.kinmatch._protocols_kinmatch_
)
__init__()
(in
MidPsiOutCAP
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__instance_size__
(in
WholeStructureEnergyAP
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__CPP_KMedoid__
(in
rosetta.protocols.toolbox._protocols_toolbox_
)
__init__()
(in
PCS_FragDistance
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__instance_size__
(in
WholeStructureEnergyCAP
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__CPP_KofNConstraint__
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
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__init__()
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PCS_FragDistanceAP
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__instance_size__
(in
YHHPlanarityEnergyAP
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__CPP_KofNConstraintCreator__
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
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__init__()
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PCS_FragDistanceCAP
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__instance_size__
(in
YHHPlanarityEnergyCAP
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__CPP_L1ScoringScheme__
(in
rosetta.core.sequence._core_sequence_
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__init__()
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PValuedFragmentScoreManager
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__instance_size__
(in
YHHPlanarityEnergyCreatorAP
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__CPP_LAMBEGO_Similarity__
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
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__init__()
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PValuedFragmentScoreManagerAP
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__instance_size__
(in
YHHPlanarityEnergyCreatorCAP
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__CPP_LargeFragWeight__
(in
rosetta.protocols.topology_broker.weights._protocols_topology_broker_weights_
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__init__()
(in
PValuedFragmentScoreManagerCAP
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__instance_size__
(in
pHEnergyAP
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__CPP_LayerDesignOperation__
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
__init__()
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PartialSecondarySimilarity
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__instance_size__
(in
pHEnergyCAP
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__CPP_LayerDesignOperationCreator__
(in
rosetta.protocols.flxbb._protocols_flxbb_
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__init__()
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PartialSecondarySimilarityAP
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__instance_size__
(in
pHEnergyCreatorAP
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__CPP_LazyEdge__
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
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__init__()
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PartialSecondarySimilarityCAP
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pHEnergyCreatorCAP
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__CPP_LazyNode__
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
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__init__()
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Phi
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(in
SugarBackboneEnergyAP
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__CPP_LazySilentFileJobInputter__
(in
rosetta.protocols.jd2._protocols_jd2_
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__init__()
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PhiAP
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__instance_size__
(in
SugarBackboneEnergyCAP
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__CPP_LazySilentFileJobInputterCreator__
(in
rosetta.protocols.jd2._protocols_jd2_
)
__init__()
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PhiCAP
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SugarBackboneEnergyCreatorAP
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__CPP_LazySilentFilePoseInputStream__
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rosetta.core.import_pose.pose_stream._core_import_pose_pose_stream_
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__init__()
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PhiPsiRmsd
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(in
SugarBackboneEnergyCreatorCAP
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__CPP_LeastNativeLike9merFilter__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
PhiPsiRmsdAP
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__instance_size__
(in
DFIRE_EnergyAP
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__CPP_LeastNativeLike9merFilterCreator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
PhiPsiRmsdCAP
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__instance_size__
(in
DFIRE_EnergyCAP
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__CPP_LegacyKicSampler__
(in
rosetta.protocols.loop_modeling.samplers._protocols_loop_modeling_samplers_
)
__init__()
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PhiPsiSquareWell
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__instance_size__
(in
DFIRE_EnergyCreatorAP
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__CPP_LegacyKicSamplerCreator__
(in
rosetta.protocols.loop_modeling.samplers._protocols_loop_modeling_samplers_
)
__init__()
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PhiPsiSquareWellAP
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__instance_size__
(in
DFIRE_EnergyCreatorCAP
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__CPP_LegacyRootClaim__
(in
rosetta.protocols.topology_broker.claims._protocols_topology_broker_claims_
)
__init__()
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PhiPsiSquareWellCAP
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__instance_size__
(in
DFIRE_Potential
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__CPP_LeGrandSasa__
(in
rosetta.core.scoring.sasa._core_scoring_sasa_
)
__init__()
(in
ProfileScore
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__instance_size__
(in
DFIRE_PotentialAP
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rosetta.core.fragment.picking_old.vall.gen._core_fragment_picking_old_vall_gen_
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DFIRE_PotentialCAP
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rosetta.protocols.antibody._protocols_antibody_
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ProfileScoreBlosum62
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SingletonBase_T_core_chemical_ChemicalManager_T
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rosetta.protocols.ligand_docking._protocols_ligand_docking_
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ProfileScoreBlosum62AP
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rosetta.protocols.ligand_docking._protocols_ligand_docking_
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rosetta.protocols.match.downstream._protocols_match_downstream_
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ProfileScoreCAP
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MMBondAngleLibrary
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rosetta.protocols.ligand_docking._protocols_ligand_docking_
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ProfileScoreDistWeight
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rosetta.protocols.ligand_docking._protocols_ligand_docking_
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ProfileScoreDistWeightAP
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rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
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ProfileScoreDistWeightCAP
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MMBondAngleResidueTypeParam
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rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
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ProfileScoreL1
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MMBondAngleResidueTypeParamAP
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rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
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ProfileScoreL1AP
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MMBondAngleResidueTypeParamCAP
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rosetta.protocols.match.output._protocols_match_output_
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ProfileScoreL1CAP
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MMBondAngleResidueTypeParamSet
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rosetta.core.scoring.methods._core_scoring_methods_
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ProfileScoreStructL1
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MMBondAngleResidueTypeParamSetAP
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rosetta.core.scoring.methods._core_scoring_methods_
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ProfileScoreStructL1AP
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MMBondAngleResidueTypeParamSetCAP
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rosetta.protocols.moves._protocols_moves_
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ProfileScoreStructL1CAP
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MMBondAngleScore
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rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
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ProfileScoreSubMatrix
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MMBondAngleScoreAP
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rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
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ProfileScoreSubMatrixAP
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MMBondAngleScoreCAP
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rosetta.core.scoring.func._core_scoring_func_
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ProfileScoreSubMatrixCAP
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MMBondLengthLibrary
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rosetta.core.optimization._core_optimization_
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ProlinePhiScore
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MMBondLengthLibraryAP
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rosetta.protocols.sic_dock._protocols_sic_dock_
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ProlinePhiScoreAP
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MMBondLengthLibraryCAP
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rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
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ProlinePhiScoreCAP
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rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
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Psi
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MMBondLengthScoreAP
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rosetta.protocols.membrane.io._protocols_membrane_io_
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PsiAP
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MMBondLengthScoreCAP
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rosetta.protocols.membrane.io._protocols_membrane_io_
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PsiCAP
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MMLJEnergyTable
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rosetta.protocols.membrane.io._protocols_membrane_io_
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RDCScore
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MMLJEnergyTableAP
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rosetta.protocols.membrane.io._protocols_membrane_io_
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RDCScoreAP
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MMLJEnergyTableCAP
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rosetta.numeric.expression_parser._numeric_expression_parser_
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RDCScoreCAP
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MMLJLibrary
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rosetta.numeric.expression_parser._numeric_expression_parser_
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RamaScore
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MMLJLibraryAP
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rosetta.core.scoring.methods._core_scoring_methods_
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RamaScoreAP
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MMLJLibraryCAP
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rosetta.core.scoring.methods._core_scoring_methods_
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RamaScoreCAP
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rosetta.core.scoring.methods._core_scoring_methods_
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ScoreEValuator
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rosetta.core.scoring.methods._core_scoring_methods_
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MMLJScoreCAP
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rosetta.core.scoring.methods._core_scoring_methods_
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ScoreEValuatorCAP
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MMTorsionLibrary
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rosetta.core.scoring.methods._core_scoring_methods_
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rosetta.core.scoring.methods._core_scoring_methods_
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MMTorsionLibraryCAP
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rosetta.core.scoring.methods._core_scoring_methods_
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rosetta.protocols.pack_daemon._protocols_pack_daemon_
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MMTorsionScoreAP
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rosetta.protocols.cryst._protocols_cryst_
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MMTorsionScoreCAP
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rosetta.protocols.cryst._protocols_cryst_
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SecondarySimilarityCAP
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MMEnergyTableAtomAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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MMEnergyTableAtomCAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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SequenceIdentityAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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SequenceIdentityCAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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SingletonBase_T_core_chemical_ChemicalManager_T
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rosetta.core.scoring.constraints._core_scoring_constraints_
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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rosetta.core.scoring.constraints._core_scoring_constraints_
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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MotifHashManagerCAP
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rosetta.protocols.loophash._protocols_loophash_
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MotifHit
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rosetta.protocols.loophash._protocols_loophash_
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rosetta.protocols.relax._protocols_relax_
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MotifHitCAP
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rosetta.protocols.relax._protocols_relax_
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MotifHitStats
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rosetta.protocols.kinematic_closure.perturbers._protocols_kinematic_closure_perturbers_
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rosetta.core.scoring.methods._core_scoring_methods_
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MotifHitStatsCAP
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rosetta.protocols.loops._protocols_loops_
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TorsionBinSimilarity
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rosetta.protocols.analysis._protocols_analysis_
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TorsionBinSimilarityAP
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MotifHitsAP
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rosetta.protocols.features._protocols_features_
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TorsionBinSimilarityCAP
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MotifHitsCAP
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rosetta.protocols.features._protocols_features_
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__CPP_ABEGO_SS_Score__
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RPM_FilterStats
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rosetta.protocols.loop_modeling._protocols_loop_modeling_
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__CPP_AmbigCSScore__
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RPM_FilterStatsAP
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rosetta.protocols.loop_modeling._protocols_loop_modeling_
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__CPP_AtomBasedConstraintsScore__
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RPM_FilterStatsCAP
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rosetta.protocols.loop_build._protocols_loop_build_
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__CPP_AtomPairConstraintsScore__
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rosetta.core.scoring.loop_graph._core_scoring_loop_graph_
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__CPP_BFactor__
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ResPairMotifAP
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rosetta.core.scoring.loop_graph._core_scoring_loop_graph_
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__CPP_CSScore__
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__CPP_CachingScoringMethod__
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ResPairMotifMetaBinner
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rosetta.protocols.loops.loop_mover._protocols_loops_loop_mover_
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__CPP_ConstScore__
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__CPP_DihedralConstraintsScore__
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ResPairMotifMetaBinnerCAP
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rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
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__CPP_DisulfideIdentity__
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rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
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__CPP_FragmentChunkCrms__
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rosetta.protocols.loophash._protocols_loophash_
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__CPP_FragmentCrmsdResDepth__
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rosetta.protocols.loophash._protocols_loophash_
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__CPP_FragmentCrmsd__
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rosetta.protocols.loophash._protocols_loophash_
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__CPP_FragmentDME__
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__CPP_FragmentScoreManager__
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rosetta.protocols.loophash._protocols_loophash_
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__CPP_FragmentScoringMethod__
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__CPP_GunnCostScore__
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rosetta.protocols.loophash._protocols_loophash_
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__CPP_HydrophobicityProfileSimilarity__
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XformScoreAP
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__CPP_HydrophobicitySimilarity__
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XformScoreCAP
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rosetta.protocols.loophash._protocols_loophash_
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__CPP_InterbondAngleScore__
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rosetta.protocols.abinitio._protocols_abinitio_
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__CPP_JCoupling__
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XfragAP
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rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
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XfragCAP
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rosetta.protocols.loop_modeling._protocols_loop_modeling_
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__CPP_MakeAmbigCSScore__
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__CPP_MakeAtomPairConstraintsScore__
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__CPP_MakeBFactor__
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__CPP_MakeCSScore__
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XfresAP
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rosetta.protocols.loop_modeling._protocols_loop_modeling_
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__CPP_MakeConstScore__
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XfresCAP
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__CPP_MakeDihedralConstraintsScore__
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__CPP_MakeDisulfideDistance__
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__CPP_MakeFragmentAllAtomCrmsd__
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__CPP_MakeHydrophobicityProfileSimilarity__
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rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
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rosetta.protocols.kinematic_closure.pivot_pickers._protocols_kinematic_closure_pivot_pickers_
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__CPP_MakeJCoupling__
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rosetta.protocols.loop_modeling._protocols_loop_modeling_
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__CPP_MakeLAMBEGO_Similarity__
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__CPP_LoopProtocolCreator__
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rosetta.protocols.loop_modeling._protocols_loop_modeling_
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__CPP_MakeMidPhiOut__
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rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
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__CPP_MakeMidPsiOut__
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__CPP_LoopRefineInnerCycleContainer__
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rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
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__CPP_MakePCS_FragDistance__
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Ball
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__CPP_LoopRefineInnerCycleContainerCreator__
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rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
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BallAP
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rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
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__CPP_MakePhiPsiRmsd__
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BallCAP
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__CPP_LoopRelaxMoverCreator__
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rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
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__CPP_MakePhiPsiSquareWell__
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HolesEnergyAP
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rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
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__CPP_MakePhi__
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HolesEnergyCAP
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rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
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HolesEnergyCreatorAP
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rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
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HolesEnergyCreatorCAP
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rosetta.protocols.antibody_legacy._protocols_antibody_legacy_
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__CPP_MakeProfileScoreL1__
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HolesEnergyResAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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__CPP_MakeProfileScoreStructL1__
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HolesEnergyResCAP
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rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
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__CPP_MakeProfileScoreSubMatrix__
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HolesParams
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__CPP_LoopsDatabaseDefinerCreator__
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rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
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__CPP_MakeProfileScore__
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HolesParamsAP
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rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
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__CPP_MakeProlinePhiScore__
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HolesParamsCAP
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rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
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__CPP_MakePsi__
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HolesParamsRes
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rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
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__CPP_MakeRDCScore__
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HolesParamsResAP
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rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
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__CPP_MakeRamaScore__
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HolesParamsResCAP
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rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
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__CPP_MakeSecondaryIdentity__
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HolesResult
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rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
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__CPP_MakeSecondarySimilarity__
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HolesResultAP
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rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
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__CPP_MakeSequenceIdentity__
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HolesResultCAP
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rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
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__CPP_MakeSolventAccessibility__
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PoseBalls
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rosetta.protocols.loops._protocols_loops_
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__CPP_MakeTalosSSSimilarity__
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PoseBallsAP
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rosetta.protocols.loops._protocols_loops_
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__CPP_MakeTorsionBinSimilarity__
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PoseBallsCAP
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__CPP_MidPhiOut__
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PoseBallsLite
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rosetta.protocols.loops._protocols_loops_
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__CPP_MidPsiOut__
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PoseBallsLiteAP
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rosetta.protocols.loops._protocols_loops_
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PoseBallsLiteCAP
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rosetta.protocols.loops._protocols_loops_
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__CPP_PValuedFragmentScoreManager__
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rosetta.core.scoring._core_scoring_
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__CPP_PhiPsiSquareWell__
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SurfEnergyAP
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rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_
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__CPP_Phi__
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rosetta.numeric.expression_parser._numeric_expression_parser_
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__CPP_ProfileScoreBlosum62__
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rosetta.numeric.expression_parser._numeric_expression_parser_
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__CPP_ProfileScoreStructL1__
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__CPP_ProfileScoreSubMatrix__
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rosetta.protocols.helical_bundle._protocols_helical_bundle_
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__CPP_ProlinePhiScore__
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__CPP_Psi__
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__CPP_RDCScore__
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__CPP_RamaScore__
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rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
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__CPP_ScoreEValuator__
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__CPP_SequenceIdentity__
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__CPP_SolventAccessibility__
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rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
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__CPP_TalosSSSimilarity__
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rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
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AreaAccumulatorCAP
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rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
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FragLib
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Array2D
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rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
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FragLibAP
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Array2DAP
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rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
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Array2DCAP
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RMSVallData
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RMSVallDataAP
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RMSVallDataCAP
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SingleResidueTorsionFragmentLibrary
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LR_AtomData
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rosetta.protocols.match._protocols_match_
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Point
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rosetta.protocols.match.output._protocols_match_output_
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GeneralizedKICselectorCAP
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PointCAP
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rosetta.protocols.metal_interface._protocols_metal_interface_
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rosetta.protocols.match.output._protocols_match_output_
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rosetta.protocols.match.output._protocols_match_output_
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rosetta.protocols.match._protocols_match_
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PosePackDataCAP
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SasaOptions
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EntityAP
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SasaOptionsAP
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EntityCAP
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SasaOptionsCAP
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EntityElement
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SasaResult
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rosetta.core.sequence._core_sequence_
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EntityElementAP
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SasaResultAP
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rosetta.numeric.expression_parser._numeric_expression_parser_
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EntityElementCAP
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SasaResultCAP
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EntityElementCreator
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SimplePDB
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rosetta.protocols.stepwise.sampler._protocols_stepwise_sampler_
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EntityElementCreatorAP
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SimplePDBAP
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rosetta.protocols.stepwise.sampler._protocols_stepwise_sampler_
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EntityElementCreatorCAP
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SimplePDBCAP
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rosetta.core.sequence._core_sequence_
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EntityElementFactoryAP
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SimplePDB_Atom
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rosetta.protocols.moves._protocols_moves_
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EntityElementFactoryCAP
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SimplePDB_AtomAP
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rosetta.protocols.md._protocols_md_
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EntityElementsEqual
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SimplePDB_AtomCAP
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rosetta.protocols.medal._protocols_medal_
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EntityElementsEqualAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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rosetta.protocols.medal._protocols_medal_
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EntityElementsEqualCAP
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rosetta.core.scoring._core_scoring_
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EntityRandomizer
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EntityRandomizerAP
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EntityRandomizerCAP
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SliceAP
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FitnessFunctionAP
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FitnessFunctionCAP
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SphereCAP
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GeneticAlgorithmAP
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rosetta.core.scoring.membrane._core_scoring_membrane_
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traceAP
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rosetta.core.scoring._core_scoring_
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traceCAP
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rosetta.core.scoring.methods._core_scoring_methods_
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RG_Energy_RNAAP
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rosetta.core.scoring.methods._core_scoring_methods_
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RG_Energy_RNACAP
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rosetta.core.scoring.methods._core_scoring_methods_
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Mutate1Randomizer
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RG_Energy_RNACreatorAP
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rosetta.core.scoring.methods._core_scoring_methods_
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RG_Energy_RNACreatorCAP
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rosetta.core.scoring.methods._core_scoring_methods_
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Mutate1RandomizerCAP
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RNA_AtomVDW
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rosetta.core.scoring.methods._core_scoring_methods_
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PositionSpecificRandomizer
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RNA_AtomVDWAP
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rosetta.core.conformation.membrane._core_conformation_membrane_
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PositionSpecificRandomizerAP
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RNA_AtomVDWCAP
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rosetta.core.scoring.methods._core_scoring_methods_
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PositionSpecificRandomizerCAP
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RNA_BulgeEnergyAP
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SingletonBase_T_protocols_genetic_algorithm_EntityElementFactory_T
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RNA_BulgeEnergyCAP
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RNA_BulgeEnergyCreatorAP
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SingletonBase_T_protocols_genetic_algorithm_EntityElementFactory_TCAP
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RNA_BulgeEnergyCreatorCAP
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rosetta.protocols.membrane._protocols_membrane_
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Vec1Hash
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RNA_CentroidInfoAP
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rosetta.core.scoring._core_scoring_
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Vec1HashAP
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RNA_CentroidInfoCAP
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Vec1HashCAP
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RNA_EnergyMethodOptions
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rosetta.protocols.simple_moves._protocols_simple_moves_
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__CPP_DiscreteRandomizer__
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RNA_EnergyMethodOptionsAP
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rosetta.protocols.topology_broker._protocols_topology_broker_'
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__CPP_EntityElementCreator__
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RNA_EnergyMethodOptionsCAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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__CPP_EntityElement__
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RNA_FilteredBaseBaseInfoAP
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__CPP_EntityRandomizer__
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RNA_FilteredBaseBaseInfoCAP
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__CPP_Entity__
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RNA_FullAtomStackingEnergyAP
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rosetta.numeric.expression_parser._numeric_expression_parser_
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__CPP_FitnessFunction__
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RNA_FullAtomStackingEnergyCAP
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rosetta.numeric.expression_parser._numeric_expression_parser_
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__CPP_GeneticAlgorithmBase__
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RNA_FullAtomStackingEnergyCreatorAP
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rosetta.protocols.evaluation._protocols_evaluation_
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__CPP_GeneticAlgorithm__
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RNA_FullAtomStackingEnergyCreatorCAP
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rosetta.core.import_pose.pose_stream._core_import_pose_pose_stream_
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__CPP_Mutate1Randomizer__
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RNA_FullAtomVDW_BasePhosphateAP
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rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
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RNA_FullAtomVDW_BasePhosphateCAP
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rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
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AnchoredGraftMover
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RNA_FullAtomVDW_BasePhosphateCreatorAP
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rosetta.basic._basic_
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AnchoredGraftMoverAP
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RNA_FullAtomVDW_BasePhosphateCreatorCAP
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rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
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AnchoredGraftMoverCAP
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RNA_JR_SuiteEnergyAP
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rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
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AnchoredGraftMoverCreator
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RNA_JR_SuiteEnergyCAP
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rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
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AnchoredGraftMoverCreatorAP
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AnchoredGraftMoverCreatorCAP
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rosetta.numeric.expression_parser._numeric_expression_parser_
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CCDEndsGraftMover
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RNA_LJ_BaseEnergyAP
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CCDEndsGraftMoverAP
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CCDEndsGraftMoverCAP
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rosetta.core.scoring._core_scoring_
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CCDEndsGraftMoverCreator
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RNA_LJ_BaseEnergyCreatorCAP
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rosetta.core.scoring._core_scoring_
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CCDEndsGraftMoverCreatorAP
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RNA_LowResolutionPotential
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rosetta.core.scoring._core_scoring_
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CCDEndsGraftMoverCreatorCAP
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GraftMoverBase
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RNA_LowResolutionPotentialCAP
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GraftMoverBaseAP
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RNA_Mg_EnergyAP
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rosetta.protocols.ligand_docking._protocols_ligand_docking_
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GraftMoverBaseCAP
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RNA_Mg_EnergyCAP
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rosetta.protocols.ligand_docking._protocols_ligand_docking_
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SingletonBase_T_core_chemical_ChemicalManager_T
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RNA_Mg_EnergyCreatorAP
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rosetta.protocols.ligand_docking._protocols_ligand_docking_
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RNA_RawBaseBaseInfoAP
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InsertPoseIntoPoseMoverCreator
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rosetta.protocols.antibody._protocols_antibody_
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RNA_TorsionEnergyCAP
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__CPP_ModifyAnnealer__
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rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
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ReplaceRegionMover
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__instance_size__
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RNA_TorsionEnergyCreatorAP
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__CPP_ModifyAnnealerCreator__
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
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ReplaceRegionMoverAP
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__instance_size__
(in
RNA_TorsionEnergyCreatorCAP
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__CPP_ModifyVariantTypeMover__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
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__init__()
(in
ReplaceRegionMoverCAP
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__instance_size__
(in
RNA_TorsionPotential
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__CPP_ModifyVariantTypeMoverCreator__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
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ReplaceRegionMoverCreator
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__instance_size__
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RNA_TorsionPotentialAP
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__CPP_MolarMassFilter__
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
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ReplaceRegionMoverCreatorAP
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__instance_size__
(in
RNA_TorsionPotentialCAP
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__CPP_MolarMassFilterCreator__
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
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ReplaceRegionMoverCreatorCAP
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__instance_size__
(in
RNA_VDW_EnergyAP
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__CPP_MolecularMassFilter__
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
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SingletonBase_T_core_chemical_ChemicalManager_T
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__instance_size__
(in
RNA_VDW_EnergyCAP
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__CPP_MolecularMassFilterCreator__
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
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(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
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__instance_size__
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RNA_VDW_EnergyCreatorAP
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__CPP_MolecularSurfaceCalculator__
(in
rosetta.core.scoring.sc._core_scoring_sc_
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(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
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__instance_size__
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RNA_VDW_EnergyCreatorCAP
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__CPP_MonteCarlo__
(in
rosetta.protocols.moves._protocols_moves_
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__CPP_DeleteRegionMoverCreator__
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__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_T
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__CPP_MonteCarloExceptionConverge__
(in
rosetta.protocols.moves._protocols_moves_
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__CPP_DeleteRegionMover__
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__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
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__CPP_MonteCarloLoader__
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rosetta.protocols.jd2.parser._protocols_jd2_parser_
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__CPP_InsertPoseIntoPoseMoverCreator__
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__instance_size__
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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__CPP_MonteCarloLoaderCreator__
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rosetta.protocols.jd2.parser._protocols_jd2_parser_
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__CPP_InsertPoseIntoPoseMover__
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__instance_size__
(in
StackElecEnergyAP
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__CPP_MonteCarloRecover__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
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__CPP_KeepRegionMoverCreator__
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__instance_size__
(in
StackElecEnergyCAP
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__CPP_MonteCarloRecoverCreator__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
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__CPP_KeepRegionMover__
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__instance_size__
(in
StackElecEnergyCreatorAP
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__CPP_MonteCarloReset__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
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__init__()
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__CPP_ReplaceRegionMoverCreator__
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__instance_size__
(in
StackElecEnergyCreatorCAP
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__CPP_MonteCarloResetCreator__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
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(in
__CPP_ReplaceRegionMover__
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__instance_size__
(in
ChemicalShiftData
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__CPP_MonteCarloTest__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
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__init__()
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BackboneGridSampler
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__instance_size__
(in
ChemicalShiftDataAP
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__CPP_MonteCarloTestCreator__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
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BackboneGridSamplerAP
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__instance_size__
(in
ChemicalShiftDataCAP
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__CPP_MonteCarloUtil__
(in
rosetta.protocols.moves._protocols_moves_
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__init__()
(in
BackboneGridSamplerCAP
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__instance_size__
(in
RNA_CS_parameters
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__CPP_Motif__
(in
rosetta.protocols.motifs._protocols_motifs_
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(in
BackboneGridSamplerCreator
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__instance_size__
(in
RNA_CS_parametersAP
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__CPP_MotifDnaPacker__
(in
rosetta.protocols.motifs._protocols_motifs_
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__init__()
(in
BackboneGridSamplerCreatorAP
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__instance_size__
(in
RNA_CS_parametersCAP
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__CPP_MotifDnaPackerCreator__
(in
rosetta.protocols.motifs._protocols_motifs_
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__init__()
(in
BackboneGridSamplerCreatorCAP
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__instance_size__
(in
RNA_CS_residue_parameters
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__CPP_MotifGraftCreator__
(in
rosetta.protocols.motif_grafting.movers._protocols_motif_grafting_movers_
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BackboneGridSamplerHelper
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__instance_size__
(in
RNA_CS_residue_parametersAP
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__CPP_MotifGraftMover__
(in
rosetta.protocols.motif_grafting.movers._protocols_motif_grafting_movers_
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BackboneGridSamplerHelperAP
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__instance_size__
(in
RNA_CS_residue_parametersCAP
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__CPP_MotifHashRigidScore__
(in
rosetta.protocols.sic_dock.scores._protocols_sic_dock_scores_
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__init__()
(in
BackboneGridSamplerHelperCAP
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__instance_size__
(in
RNA_ChemicalShiftEnergyAP
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__CPP_MotifScoreFilter__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
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BundleGridSampler
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__instance_size__
(in
RNA_ChemicalShiftEnergyCAP
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__CPP_MotifScoreFilterCreator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
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(in
BundleGridSamplerAP
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__instance_size__
(in
RNA_ChemicalShiftEnergyCreatorAP
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__CPP_MoveBeforeFilter__
(in
rosetta.protocols.filters._protocols_filters_
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(in
BundleGridSamplerCAP
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__instance_size__
(in
RNA_ChemicalShiftEnergyCreatorCAP
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__CPP_MoveBeforeFilterCreator__
(in
rosetta.protocols.filters._protocols_filters_
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(in
BundleGridSamplerCreator
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__instance_size__
(in
RNA_ChemicalShiftPotential
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__CPP_MoveMapBuilderLoader__
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
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BundleGridSamplerCreatorAP
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__instance_size__
(in
RNA_ChemicalShiftPotentialAP
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__CPP_MoveMapBuilderLoaderCreator__
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
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BundleGridSamplerCreatorCAP
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__instance_size__
(in
RNA_ChemicalShiftPotentialCAP
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__CPP_MoveMapMover__
(in
rosetta.protocols.moves._protocols_moves_
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BundleGridSamplerHelper
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__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_T
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__CPP_MovePoseToMembraneCenterMover__
(in
rosetta.protocols.rigid._protocols_rigid_
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BundleGridSamplerHelperAP
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__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
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__CPP_Mover__
(in
rosetta.protocols.moves._protocols_moves_
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__init__()
(in
BundleGridSamplerHelperCAP
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__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
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__CPP_Mover_LoopHashRefine__
(in
rosetta.protocols.loophash._protocols_loophash_
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__init__()
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FitSimpleHelix
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__instance_size__
(in
RNA_ChemicalMappingEnergyAP
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__CPP_MoverApplyingMover__
(in
rosetta.protocols.moves._protocols_moves_
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__init__()
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FitSimpleHelixAP
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__instance_size__
(in
RNA_ChemicalMappingEnergyCAP
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__CPP_MoverContainer__
(in
rosetta.protocols.moves._protocols_moves_
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FitSimpleHelixCAP
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__instance_size__
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RNA_ChemicalMappingEnergyCreatorAP
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__CPP_MoverCreator__
(in
rosetta.protocols.moves._protocols_moves_
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FitSimpleHelixCreator
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__instance_size__
(in
RNA_ChemicalMappingEnergyCreatorCAP
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__CPP_MoverForPoseList__
(in
rosetta.protocols.moves._protocols_moves_
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__init__()
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FitSimpleHelixCreatorAP
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__instance_size__
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RNA_DMS_LowResolutionPotential
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__CPP_MPCbetaEnergy__
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
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FitSimpleHelixCreatorCAP
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__instance_size__
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RNA_DMS_LowResolutionPotentialAP
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__CPP_MPCbetaEnergyCreator__
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
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FitSimpleHelixMultiFunc
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__instance_size__
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RNA_DMS_LowResolutionPotentialCAP
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__CPP_MPDockingMover__
(in
rosetta.protocols.docking.membrane._protocols_docking_membrane_
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__init__()
(in
FitSimpleHelixMultiFuncAP
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__instance_size__
(in
RNA_DMS_Potential
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__CPP_MPDockingMoverCreator__
(in
rosetta.protocols.docking.membrane._protocols_docking_membrane_
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__init__()
(in
FitSimpleHelixMultiFuncCAP
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__instance_size__
(in
RNA_DMS_PotentialAP
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__CPP_MPDockingSetupMover__
(in
rosetta.protocols.docking.membrane._protocols_docking_membrane_
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__init__()
(in
MakeBundle
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__instance_size__
(in
RNA_DMS_PotentialCAP
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__CPP_MPDockingSetupMoverCreator__
(in
rosetta.protocols.docking.membrane._protocols_docking_membrane_
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__init__()
(in
MakeBundleAP
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__instance_size__
(in
RNA_DataBackboneEnergyAP
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__CPP_MPEnvEnergy__
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
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__init__()
(in
MakeBundleCAP
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__instance_size__
(in
RNA_DataBackboneEnergyCAP
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__CPP_MPEnvEnergyCreator__
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
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__init__()
(in
MakeBundleCreator
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__instance_size__
(in
RNA_DataBackboneEnergyCreatorAP
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__CPP_MPFastRelaxMover__
(in
rosetta.protocols.relax.membrane._protocols_relax_membrane_
)
__init__()
(in
MakeBundleCreatorAP
)
__instance_size__
(in
RNA_DataBackboneEnergyCreatorCAP
)
__CPP_MPFastRelaxMoverCreator__
(in
rosetta.protocols.relax.membrane._protocols_relax_membrane_
)
__init__()
(in
MakeBundleCreatorCAP
)
__instance_size__
(in
RNA_DataInfo
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__CPP_MPLipoEnergy__
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
__init__()
(in
MakeBundleHelix
)
__instance_size__
(in
RNA_DataInfoAP
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__CPP_MPLipoEnergyCreator__
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
__init__()
(in
MakeBundleHelixAP
)
__instance_size__
(in
RNA_DataInfoCAP
)
__CPP_MPNonHelixPenalty__
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
__init__()
(in
MakeBundleHelixCAP
)
__instance_size__
(in
RNA_Datum
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__CPP_MPNonHelixPenaltyCreator__
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
__init__()
(in
MakeBundleHelixCreator
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__instance_size__
(in
RNA_DatumAP
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__CPP_MPPairEnergy__
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
__init__()
(in
MakeBundleHelixCreatorAP
)
__instance_size__
(in
RNA_DatumCAP
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__CPP_MPPairEnergyCreator__
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
__init__()
(in
MakeBundleHelixCreatorCAP
)
__instance_size__
(in
RNA_Reactivity
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__CPP_MPSymDockMover__
(in
rosetta.protocols.symmetric_docking.membrane._protocols_symmetric_docking_membrane_
)
__init__()
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PerturbBundle
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__instance_size__
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RNA_ReactivityAP
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__CPP_MPSymDockMoverCreator__
(in
rosetta.protocols.symmetric_docking.membrane._protocols_symmetric_docking_membrane_
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__init__()
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PerturbBundleAP
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__instance_size__
(in
RNA_ReactivityCAP
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__CPP_MPTerminiPenalty__
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
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__init__()
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PerturbBundleCAP
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__instance_size__
(in
LeGrandSasaAP
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__CPP_MPTerminiPenaltyCreator__
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
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PerturbBundleCreator
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__instance_size__
(in
LeGrandSasaCAP
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__CPP_MPTMProjPenalty__
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
__init__()
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PerturbBundleCreatorAP
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__instance_size__
(in
SasaCalc
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__CPP_MPTMProjPenaltyCreator__
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
__init__()
(in
PerturbBundleCreatorCAP
)
__instance_size__
(in
SasaCalcAP
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__CPP_MRMover__
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
__init__()
(in
PerturbBundleHelix
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__instance_size__
(in
SasaCalcCAP
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__CPP_MSDMover__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
__init__()
(in
PerturbBundleHelixAP
)
__instance_size__
(in
SasaMethod
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__CPP_MSDMoverCreator__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
__init__()
(in
PerturbBundleHelixCAP
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__instance_size__
(in
SasaMethodAP
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__CPP_mt19937_RG__
(in
rosetta.numeric.random._numeric_random_
)
__init__()
(in
PerturbBundleHelixCreator
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__instance_size__
(in
SasaMethodCAP
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__CPP_MultiConstraint__
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
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__init__()
(in
PerturbBundleHelixCreatorAP
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__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_T
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__CPP_MultiConstraintCreator__
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
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(in
PerturbBundleHelixCreatorCAP
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
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__CPP_MultiCoolAnnealer__
(in
rosetta.core.pack.annealer._core_pack_annealer_
)
__init__()
(in
PerturbBundleOptions
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__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
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__CPP_MultiPhosphateSampler__
(in
rosetta.protocols.stepwise.modeler.rna.phosphate._protocols_stepwise_modeler_rna_phosphate_
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__init__()
(in
PerturbBundleOptionsAP
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__instance_size__
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DistanceHistogram
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__CPP_MultipleDomainMover__
(in
rosetta.protocols.farna._protocols_farna_
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__init__()
(in
PerturbBundleOptionsCAP
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__instance_size__
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DistanceHistogramAP
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__CPP_MultipleOutputWrapper__
(in
rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
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__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
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__instance_size__
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DistanceHistogramCAP
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__CPP_MultipleOutputWrapperCreator__
(in
rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
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(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
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__instance_size__
(in
FastSAXSEnergyAP
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__CPP_MultiplePoseMover__
(in
rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
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(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
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__instance_size__
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FastSAXSEnergyCAP
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__CPP_MultiplePoseMoverCreator__
(in
rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
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__CPP_BackboneGridSamplerCreator__
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__instance_size__
(in
FastSAXSEnergyCreatorAP
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__CPP_MultipleSigmoids__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
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__CPP_BackboneGridSamplerHelper__
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__instance_size__
(in
FastSAXSEnergyCreatorCAP
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__CPP_MultipleSigmoidsFilterCreator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
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__CPP_BackboneGridSampler__
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__instance_size__
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FormFactor
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__CPP_MultiplyExpression__
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
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__init__()
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__CPP_BundleGridSamplerCreator__
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__instance_size__
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FormFactorAP
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__CPP_MultiProbePerSphereAccumulator__
(in
rosetta.core.scoring.packstat._core_scoring_packstat_
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__CPP_BundleGridSamplerHelper__
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__instance_size__
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FormFactorCAP
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__CPP_MultiProbePoseAccumulator__
(in
rosetta.core.scoring.packstat._core_scoring_packstat_
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__CPP_BundleGridSampler__
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__instance_size__
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FormFactorManagerAP
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__CPP_MultistateAggregateFunction__
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
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__CPP_FitSimpleHelixCreator__
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__instance_size__
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FormFactorManagerCAP
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__CPP_MultistateFitnessFunction__
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
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__CPP_FitSimpleHelix__
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__instance_size__
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SAXSEnergyAP
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__CPP_MultiThreadingMover__
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
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__CPP_MakeBundleCreator__
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__instance_size__
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SAXSEnergyCAP
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__CPP_Mutate1Randomizer__
(in
rosetta.protocols.genetic_algorithm._protocols_genetic_algorithm_
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__CPP_MakeBundleHelixCreator__
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__instance_size__
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SAXSEnergyCENAP
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__CPP_MutateFrameworkForCluster__
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
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__CPP_MakeBundleHelix__
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__instance_size__
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SAXSEnergyCENCAP
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__CPP_MutateFrameworkForClusterCreator__
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rosetta.protocols.antibody.design._protocols_antibody_design_
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__CPP_MakeBundle__
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__instance_size__
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SAXSEnergyCreatorAP
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__CPP_MutateResidue__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
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__CPP_PerturbBundleCreator__
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SAXSEnergyCreatorCAP
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__CPP_MutateResidueCreator__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
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__CPP_PerturbBundleHelixCreator__
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SAXSEnergyCreatorCENAP
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__CPP_MutationSetDesignOperation__
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rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
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__CPP_PerturbBundleHelix__
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__instance_size__
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SAXSEnergyCreatorCENCAP
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__CPP_MutationsFilter__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
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__CPP_PerturbBundleOptions__
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__instance_size__
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SAXSEnergyCreatorFAAP
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__CPP_MutationsFilterCreator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
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__CPP_PerturbBundle__
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__instance_size__
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SAXSEnergyCreatorFACAP
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__CPP_NamedAngleConstraint__
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
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BundleParameters
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__instance_size__
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SAXSEnergyFAAP
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__CPP_NamedAngleConstraintCreator__
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
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__init__()
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BundleParametersAP
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__instance_size__
(in
SAXSEnergyFACAP
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__CPP_NamedAtomPairConstraint__
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
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BundleParametersCAP
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__instance_size__
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SinXOverXAP
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__CPP_NamedAtomPairConstraintCreator__
(in
rosetta.protocols.constraints_additional._protocols_constraints_additional_
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BundleParametersSet
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__instance_size__
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SinXOverXCAP
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__CPP_NATAA__
(in
rosetta.core.pack.task._core_pack_task_
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__init__()
(in
BundleParametersSetAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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BundleParametersSetCAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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rosetta.protocols.fldsgn.potentials.sspot._protocols_fldsgn_potentials_sspot_
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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rosetta.core.pack.task._core_pack_task_
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AtomAP
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rosetta.core.pack.task._core_pack_task_
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HelixNCapperMover
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AtomCAP
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rosetta.core.chemical._core_chemical_
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HelixNCapperMoverAP
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MolecularSurfaceCalculator
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rosetta.core.scoring.disulfides._core_scoring_disulfides_
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HelixNCapperMoverCAP
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MolecularSurfaceCalculatorAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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MolecularSurfaceCalculatorCAP
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rosetta.protocols.ncbb._protocols_ncbb_
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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ShapeComplementarityCalculatorAP
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rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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ShapeComplementarityCalculatorCAP
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AddSearchPatternRotSetOp
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ShapeComplementarityCalculatorExceptionAP
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AddSearchPatternRotSetOpAP
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ShapeComplementarityCalculatorExceptionCAP
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AddSearchPatternRotSetOpCAP
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_ATOM_RADIUS
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rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
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CartesianSearchPattern
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_ATOM_RADIUSAP
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rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
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CartesianSearchPatternAP
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_ATOM_RADIUSCAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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CartesianSearchPatternCAP
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_DOT
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rosetta.protocols.simple_filters._protocols_simple_filters_
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ComposeSearchPatterns
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_DOTAP
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rosetta.protocols.optimize_weights._protocols_optimize_weights_
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ComposeSearchPatternsAP
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_DOTCAP
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rosetta.protocols.optimize_weights._protocols_optimize_weights_
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ComposeSearchPatternsCAP
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_PROBE
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rosetta.protocols.simple_filters._protocols_simple_filters_
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ConstPattern
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_PROBEAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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ConstPatternAP
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_PROBECAP
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rosetta.core.scoring.methods._core_scoring_methods_
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ConstPatternCAP
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_RESULTS
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rosetta.core.scoring.methods._core_scoring_methods_
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HotspotStub
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_RESULTSAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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HotspotStubAP
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_RESULTSCAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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HotspotStubCAP
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SurfaceEnergiesAP
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rosetta.core.scoring.methods._core_scoring_methods_
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SurfaceEnergiesCAP
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rosetta.core.scoring.methods._core_scoring_methods_
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symECreatorAP
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rosetta.core.scoring.methods._core_scoring_methods_
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HotspotStubSetCAP
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symECreatorCAP
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rosetta.core.scoring.methods._core_scoring_methods_
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LSMSearchPattern
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symEnergyAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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LSMSearchPatternAP
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symEnergyCAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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LSMSearchPatternCAP
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SymmetricEnergiesAP
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rosetta.core.pack.task._core_pack_task_
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PartitionedSearchPattern
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SymmetricEnergiesCAP
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rosetta.core.graph._core_graph_
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PartitionedSearchPatternAP
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SymmetricScoreFunctionAP
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rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
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PartitionedSearchPatternCAP
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SymmetricScoreFunctionCAP
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rosetta.core.fragment._core_fragment_
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RotationSearchPattern
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CPDataCorrespondence
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rosetta.protocols.frag_picker.nonlocal._protocols_frag_picker_nonlocal_
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RotationSearchPatternAP
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CPDataCorrespondenceAP
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rosetta.core.scoring.constraints._core_scoring_constraints_
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RotationSearchPatternCAP
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CPDataCorrespondenceCAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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SICPatternAtTransform
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RotamerTrieBaseAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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SICPatternAtTransformAP
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RotamerTrieBaseCAP
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rosetta.protocols.stepwise.sampler._protocols_stepwise_sampler_
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SICPatternAtTransformCAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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rosetta.protocols.jd2._protocols_jd2_
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SearchPattern
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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rosetta.protocols.jd2._protocols_jd2_
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SearchPatternAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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rosetta.core.pack.task.operation._core_pack_task_operation_
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SearchPatternCAP
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TrieCollectionAP
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rosetta.core.pack.task.operation._core_pack_task_operation_
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SearchPatternExpansion
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TrieCollectionCAP
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rosetta.core.pack.task.operation._core_pack_task_operation_
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SearchPatternExpansionAP
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TrieCountPairBase
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rosetta.core.pack.task.operation._core_pack_task_operation_
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SearchPatternExpansionCAP
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TrieCountPairBaseAP
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rosetta.protocols.jd2.archive._protocols_jd2_archive_
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SearchPatternRotSetOp
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TrieCountPairBaseCAP
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rosetta.protocols.normalmode._protocols_normalmode_
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SearchPatternRotSetOpAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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rosetta.protocols.normalmode._protocols_normalmode_
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SearchPatternRotSetOpCAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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rosetta.protocols.normalmode._protocols_normalmode_
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SearchPatternTransform
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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rosetta.protocols.normalmode._protocols_normalmode_
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SearchPatternTransformAP
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VDWTrieCountPair1BAP
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rosetta.core.pack.task._core_pack_task_
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SearchPatternTransformCAP
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VDWTrieCountPair1BCAP
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rosetta.numeric.expression_parser._numeric_expression_parser_
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SingletonBase_T_core_chemical_ChemicalManager_T
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VDW_EnergyCreatorAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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VDW_EnergyCreatorCAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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ABEGO
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rosetta.protocols.pack_daemon._protocols_pack_daemon_
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SphericalRotationSearchPattern
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ABEGOAP
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rosetta.protocols.pack_daemon._protocols_pack_daemon_
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SphericalRotationSearchPatternAP
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ABEGOCAP
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rosetta.protocols.moves._protocols_moves_
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SphericalRotationSearchPatternCAP
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ABEGOManager
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rosetta.basic.resource_manager.locator._basic_resource_manager_locator_
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StubGenerator
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ABEGOManagerAP
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StubGeneratorAP
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ABEGOManagerCAP
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rosetta.basic.resource_manager.locator._basic_resource_manager_locator_
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StubGeneratorCAP
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Aligner
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rosetta.protocols.match._protocols_match_
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SurfaceSearchPattern
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AlignerAP
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AlignerCAP
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SurfaceSearchPatternCAP
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AlignerFactory
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AlignerFactoryAP
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AlignerFactoryCAP
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rosetta.core.sequence._core_sequence_
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VectorPair
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VectorPairCAP
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rosetta.protocols.matdes._protocols_matdes_
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__CPP_SICPatternAtTransform__
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rosetta.protocols.ncbb.oop._protocols_ncbb_oop_
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PlaceProbeMoverCAP
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DPScoringSchemeAP
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DPScoringSchemeCAP
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PlaceSurfaceProbeAP
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DP_Matrix
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PlaceSurfaceProbeCAP
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DP_MatrixAP
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rosetta.protocols.simple_moves.oop._protocols_simple_moves_oop_
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PlaceSurfaceProbeCreator
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DP_MatrixCAP
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PlaceSurfaceProbeCreatorAP
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PlaceSurfaceProbeCreatorCAP
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rosetta.protocols.simple_moves.oop._protocols_simple_moves_oop_
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L1ScoringSchemeAP
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rosetta.protocols.simple_moves.oop._protocols_simple_moves_oop_
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AllResiduesChanged
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__instance_size__
(in
L1ScoringSchemeCAP
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__CPP_OopPuckPlusMover__
(in
rosetta.protocols.simple_moves.oop._protocols_simple_moves_oop_
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(in
AllResiduesChangedAP
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__instance_size__
(in
Line
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__CPP_OopRandomPuckMover__
(in
rosetta.protocols.simple_moves.oop._protocols_simple_moves_oop_
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__init__()
(in
AllResiduesChangedCAP
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__instance_size__
(in
LineAP
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__CPP_OopRandomSmallMover__
(in
rosetta.protocols.simple_moves.oop._protocols_simple_moves_oop_
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(in
BackboneTorsionPerturbation
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__instance_size__
(in
LineCAP
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__CPP_OperateOnCertainResidues__
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
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BackboneTorsionPerturbationAP
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__instance_size__
(in
MCAlignerAP
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__CPP_OperateOnCertainResiduesCreator__
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
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BackboneTorsionPerturbationCAP
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__instance_size__
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MCAlignerCAP
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__CPP_OperateOnResidueSubset__
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
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BackboneTorsionPerturbationCreator
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MatrixScoringSchemeAP
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__CPP_OperateOnResidueSubsetCreator__
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rosetta.core.pack.task.operation._core_pack_task_operation_
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BackboneTorsionPerturbationCreatorAP
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MatrixScoringSchemeCAP
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__CPP_Operator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
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BackboneTorsionPerturbationCreatorCAP
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NWAlignerAP
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__CPP_OperatorFilterCreator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
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BackboneTorsionSampler
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NWAlignerCAP
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__CPP_OptCysHG__
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rosetta.core.pack.task.operation._core_pack_task_operation_
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BackboneTorsionSamplerAP
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PairScoringSchemeAP
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__CPP_OptCysHGCreator__
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rosetta.core.pack.task.operation._core_pack_task_operation_
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BackboneTorsionSamplerCAP
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PairScoringSchemeCAP
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__CPP_OptEMultifunc__
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rosetta.protocols.optimize_weights._protocols_optimize_weights_
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BackboneTorsionSamplerCreator
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ProfSimScoringSchemeAP
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__CPP_OptEPositionData__
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rosetta.protocols.optimize_weights._protocols_optimize_weights_
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BackboneTorsionSamplerCreatorAP
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ProfSimScoringSchemeCAP
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__CPP_OptH__
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rosetta.core.pack.task.operation._core_pack_task_operation_
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BackboneTorsionSamplerCreatorCAP
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SWAlignerAP
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__CPP_OptHCreator__
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rosetta.core.pack.task.operation._core_pack_task_operation_
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CartesianHybridize
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SWAlignerCAP
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__CPP_OptimizeThreadingMover__
(in
rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
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CartesianHybridizeAP
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__instance_size__
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ScoringScheme
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__CPP_OptimizeThreadingMoverCreator__
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rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
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CartesianHybridizeCAP
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ScoringSchemeAP
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__CPP_OrbitalsFeatures__
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rosetta.protocols.features._protocols_features_
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CartesianSampler
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ScoringSchemeCAP
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__CPP_OrbitalsFeaturesCreator__
(in
rosetta.protocols.features._protocols_features_
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CartesianSamplerAP
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__instance_size__
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ScoringSchemeFactory
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__CPP_OrbitalsScore__
(in
rosetta.core.scoring.orbitals._core_scoring_orbitals_
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CartesianSamplerCAP
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__instance_size__
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ScoringSchemeFactoryAP
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__CPP_OrbitalsScoreCreator__
(in
rosetta.core.scoring.orbitals._core_scoring_orbitals_
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CartesianSamplerCreator
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__instance_size__
(in
ScoringSchemeFactoryCAP
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__CPP_OrderedSequentialSymmetrySlider__
(in
rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
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CartesianSamplerCreatorAP
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__instance_size__
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Sequence
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rosetta.numeric.expression_parser._numeric_expression_parser_
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CartesianSamplerCreatorCAP
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SequenceAP
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__CPP_OriginalBackboneBuildPoint__
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rosetta.protocols.match.upstream._protocols_match_upstream_
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ChunkTrialMover
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SequenceAlignment
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__CPP_OrResidueSelector__
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rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
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ChunkTrialMoverAP
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__instance_size__
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SequenceAlignmentAP
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__CPP_OrResidueSelectorCreator__
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rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
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ChunkTrialMoverCAP
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__instance_size__
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SequenceAlignmentCAP
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__CPP_OTFFlexbbEdge__
(in
rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
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DDomainParse
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__instance_size__
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SequenceAlignmentHasher
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__CPP_OTFFlexbbNode__
(in
rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
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DDomainParseAP
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__instance_size__
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SequenceAlignmentHasherAP
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__CPP_OtherContextScoreFunction__
(in
rosetta.protocols.flexpack._protocols_flexpack_
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DDomainParseCAP
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__instance_size__
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SequenceAlignmentHasherCAP
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__CPP_OtherPoseEnergy__
(in
rosetta.core.scoring.methods._core_scoring_methods_
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DomainAssembly
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SequenceCAP
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__CPP_OtherPoseEnergyCreator__
(in
rosetta.core.scoring.methods._core_scoring_methods_
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DomainAssemblyAP
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__instance_size__
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SequenceCouplingAP
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(in
rosetta.protocols.outputter._protocols_outputter_
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DomainAssemblyCAP
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__instance_size__
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SequenceCouplingCAP
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__CPP_OutputWriter__
(in
rosetta.protocols.match.output._protocols_match_output_
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FoldTreeHybridize
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SequenceCouplingCreatorAP
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__CPP_P_AA_Energy__
(in
rosetta.core.scoring.methods._core_scoring_methods_
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(in
FoldTreeHybridizeAP
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__instance_size__
(in
SequenceCouplingCreatorCAP
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__CPP_P_AA_EnergyCreator__
(in
rosetta.core.scoring.methods._core_scoring_methods_
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(in
FoldTreeHybridizeCAP
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__instance_size__
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SequenceCreator
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__CPP_P_AA_pp_Energy__
(in
rosetta.core.scoring.methods._core_scoring_methods_
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FragmentBiasAssigner
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(in
SequenceCreatorAP
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__CPP_P_AA_pp_EnergyCreator__
(in
rosetta.core.scoring.methods._core_scoring_methods_
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(in
FragmentBiasAssignerAP
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__instance_size__
(in
SequenceCreatorCAP
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__CPP_PackerNeighborGraphFilter__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
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(in
FragmentBiasAssignerCAP
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__instance_size__
(in
SequenceFactoryAP
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__CPP_PackRotamersMover__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
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__init__()
(in
HybridizeFoldtreeDynamic
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__instance_size__
(in
SequenceFactoryCAP
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__CPP_PackRotamersMoverCreator__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
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HybridizeFoldtreeDynamicAP
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__instance_size__
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SequenceProfileAP
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__CPP_PackRotamersMoverLazy__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
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__init__()
(in
HybridizeFoldtreeDynamicCAP
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__instance_size__
(in
SequenceProfileCAP
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__CPP_PackScreener__
(in
rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
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HybridizeProtocol
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SequenceProfileCreatorAP
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__CPP_PackStatEnergy__
(in
rosetta.core.scoring.methods._core_scoring_methods_
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HybridizeProtocolAP
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(in
SequenceProfileCreatorCAP
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__CPP_PackStatEnergyCreator__
(in
rosetta.core.scoring.methods._core_scoring_methods_
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HybridizeProtocolCAP
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__instance_size__
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SimpleScoringSchemeAP
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__CPP_PackStatFilter__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
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HybridizeProtocolCreator
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__instance_size__
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SimpleScoringSchemeCAP
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__CPP_PackStatFilterCreator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
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HybridizeProtocolCreatorAP
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__instance_size__
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SimpleSequenceCreatorAP
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__CPP_PackStatMover__
(in
rosetta.protocols.analysis._protocols_analysis_
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HybridizeProtocolCreatorCAP
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__instance_size__
(in
SimpleSequenceCreatorCAP
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__CPP_PairEnergy__
(in
rosetta.core.scoring.methods._core_scoring_methods_
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InsertChunkMover
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__instance_size__
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SingletonBase_T_core_sequence_SequenceFactory_T
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__CPP_PairEnergyCreator__
(in
rosetta.core.scoring.methods._core_scoring_methods_
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InsertChunkMoverAP
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__instance_size__
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SingletonBase_T_core_sequence_SequenceFactory_TAP
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__CPP_PairFeatures__
(in
rosetta.protocols.features._protocols_features_
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(in
InsertChunkMoverCAP
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__instance_size__
(in
SingletonBase_T_core_sequence_SequenceFactory_TCAP
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__CPP_PairFeaturesCreator__
(in
rosetta.protocols.features._protocols_features_
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__init__()
(in
MRMover
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__instance_size__
(in
ChainbreakUtil
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__CPP_PairingLibrary__
(in
rosetta.protocols.jumping._protocols_jumping_
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__init__()
(in
MRMoverAP
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__instance_size__
(in
ChainbreakUtilAP
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__CPP_PairScoringScheme__
(in
rosetta.core.sequence._core_sequence_
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__init__()
(in
MRMoverCAP
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__instance_size__
(in
ChainbreakUtilCAP
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__CPP_PalesEvaluator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
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__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
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__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_T
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__CPP_PalesEvaluatorCreator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
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__CPP_ParallelBetaPairingPreferenceFilter__
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
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__init__()
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
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__CPP_ParallelBetaPairingPreferenceFilterCreator__
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
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SingletonBase_T_protocols_jumping_StandardPairingLibrary_T
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__instance_size__
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AgglomerativeHierarchicalClusterer
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__CPP_ParallelTempering__
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
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(in
SingletonBase_T_protocols_jumping_StandardPairingLibrary_TAP
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__instance_size__
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AgglomerativeHierarchicalClustererAP
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__CPP_ParallelTemperingCreator__
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
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SingletonBase_T_protocols_jumping_StandardPairingLibrary_TCAP
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__instance_size__
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AgglomerativeHierarchicalClustererCAP
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__CPP_Parameters__
(in
rosetta.core.conformation.parametric._core_conformation_parametric_
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TMalign
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__instance_size__
(in
AverageLinkClustererAP
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__CPP_ParametersSet__
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rosetta.core.conformation.parametric._core_conformation_parametric_
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TMalignAP
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__instance_size__
(in
AverageLinkClustererCAP
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__CPP_ParatopeEpitopeSiteConstraintMover__
(in
rosetta.protocols.antibody.constraints._protocols_antibody_constraints_
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__init__()
(in
TMalignCAP
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__instance_size__
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Calculator
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__CPP_ParatopeEpitopeSiteConstraintMoverCreator__
(in
rosetta.protocols.antibody.constraints._protocols_antibody_constraints_
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(in
TemplateHistory
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__instance_size__
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CalculatorAP
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__CPP_ParatopeSiteConstraintMover__
(in
rosetta.protocols.antibody.constraints._protocols_antibody_constraints_
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__init__()
(in
TemplateHistoryAP
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__instance_size__
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CalculatorCAP
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__CPP_ParatopeSiteConstraintMoverCreator__
(in
rosetta.protocols.antibody.constraints._protocols_antibody_constraints_
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__init__()
(in
TemplateHistoryCAP
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__instance_size__
(in
ClusterOptions
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__CPP_ParetoOptMutationMover__
(in
rosetta.protocols.design_opt._protocols_design_opt_
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(in
WeightedFragmentSmoothTrialMover
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__instance_size__
(in
ClusterOptionsAP
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__CPP_ParetoOptMutationMoverCreator__
(in
rosetta.protocols.design_opt._protocols_design_opt_
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(in
WeightedFragmentSmoothTrialMoverAP
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__instance_size__
(in
ClusterOptionsCAP
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__CPP_ParsedProtocol__
(in
rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
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(in
WeightedFragmentSmoothTrialMoverCAP
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__instance_size__
(in
ClusteringTreeNodeAP
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__CPP_ParsedProtocolCreator__
(in
rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
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(in
WeightedFragmentTrialMover
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__instance_size__
(in
ClusteringTreeNodeCAP
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__CPP_Parser__
(in
rosetta.protocols.jd2._protocols_jd2_
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(in
WeightedFragmentTrialMoverAP
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__instance_size__
(in
CompleteLinkClustererAP
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__CPP_ParserJobInputter__
(in
rosetta.protocols.protein_interface_design._protocols_protein_interface_design_
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(in
WeightedFragmentTrialMoverCAP
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__instance_size__
(in
CompleteLinkClustererCAP
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__CPP_ParserJobInputterCreator__
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rosetta.protocols.protein_interface_design._protocols_protein_interface_design_
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(in
__CPP_AllResiduesChanged__
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__instance_size__
(in
EulerAngles_RealAP
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__CPP_PartialSecondarySimilarity__
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
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__CPP_BackboneTorsionPerturbationCreator__
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__instance_size__
(in
EulerAngles_RealCAP
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__CPP_PartialThreadingMover__
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
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__CPP_BackboneTorsionPerturbation__
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__instance_size__
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EulerAngles_doubleAP
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__CPP_PartitionContactScreener__
(in
rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
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__CPP_BackboneTorsionSamplerCreator__
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__instance_size__
(in
EulerAngles_doubleCAP
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__CPP_PartitionedSearchPattern__
(in
rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_
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__CPP_BackboneTorsionSampler__
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(in
EulerAngles_floatAP
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__CPP_Patch__
(in
rosetta.core.chemical._core_chemical_
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__CPP_CartesianHybridize__
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__instance_size__
(in
EulerAngles_floatCAP
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__CPP_PatchCase__
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rosetta.core.chemical._core_chemical_
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__CPP_CartesianSamplerCreator__
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HomogeneousTransform_DoubleAP
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__CPP_PatchdockTransform__
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rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
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__CPP_CartesianSampler__
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HomogeneousTransform_DoubleCAP
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__CPP_PatchdockTransformCreator__
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rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
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__CPP_ChunkTrialMover__
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HomogeneousTransform_T_double_T
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__CPP_PatchOperation__
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rosetta.core.chemical._core_chemical_
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__CPP_DomainAssembly__
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__instance_size__
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HomogeneousTransform_T_double_TAP
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__CPP_PattersonCorrEnergy__
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rosetta.core.scoring.electron_density._core_scoring_electron_density_
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__CPP_FoldTreeHybridize__
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__instance_size__
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HomogeneousTransform_T_double_TCAP
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__CPP_PattersonCorrEnergyCreator__
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rosetta.core.scoring.electron_density._core_scoring_electron_density_
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__CPP_HybridizeProtocolCreator__
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__instance_size__
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IOTraits_T_double_T
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rosetta.core.scoring.methods._core_scoring_methods_
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__CPP_HybridizeProtocol__
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IOTraits_T_double_TAP
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rosetta.protocols.scoring.methods.pcs._protocols_scoring_methods_pcs_
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__CPP_InsertChunkMover__
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__instance_size__
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IOTraits_T_double_TCAP
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rosetta.protocols.scoring.methods.pcsTs1._protocols_scoring_methods_pcsTs1_
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__CPP_MRMover__
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IOTraits_T_float_T
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rosetta.protocols.scoring.methods.pcsTs2._protocols_scoring_methods_pcsTs2_
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__CPP_TemplateHistory__
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IOTraits_T_float_TAP
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__CPP_WeightedFragmentSmoothTrialMover__
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IOTraits_T_float_TCAP
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__CPP_WeightedFragmentTrialMover__
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IOTraits_T_int_T
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rosetta.protocols.scoring.methods.pcs._protocols_scoring_methods_pcs_
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IdealizeMover
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IOTraits_T_int_TAP
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rosetta.protocols.scoring.methods.pcsTs1._protocols_scoring_methods_pcsTs1_
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IdealizeMoverAP
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IOTraits_T_int_TCAP
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__CPP_PCS_Energy_Ts2__
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rosetta.protocols.scoring.methods.pcsTs2._protocols_scoring_methods_pcsTs2_
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IdealizeMoverCAP
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__instance_size__
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IOTraits_T_long_double_T
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__CPP_PCS_Energy_Ts3__
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rosetta.protocols.scoring.methods.pcsTs3._protocols_scoring_methods_pcsTs3_
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IdealizeMoverCreator
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__instance_size__
(in
IOTraits_T_long_double_TAP
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__CPP_PCS_Energy_Ts4__
(in
rosetta.protocols.scoring.methods.pcsTs4._protocols_scoring_methods_pcsTs4_
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IdealizeMoverCreatorAP
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__instance_size__
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IOTraits_T_long_double_TCAP
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__CPP_PCS_FragDistance__
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rosetta.protocols.moves._protocols_moves_
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xyzStripeHash
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rosetta.protocols.moves._protocols_moves_
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xyzStripeHashCAP
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__CPP_PDBJobOutputter__
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xyzStripeHashWithMeta_floatCAP
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BicubicSplineAP
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__CPP_PoseInputStreamJobInputter__
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__CPP_ScoreOnlyJobOutputter__
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CubicSpline
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__CPP_SilentFileJobInputterCreator__
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CubicSplineCAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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__CPP_SilentFileJobInputter__
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__CPP_SilentFileJobOutputter__
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__CPP_SingleFileBuffer__
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LinearFunction
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AbstractArchiveBase
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LinearFunctionCAP
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Point
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PointAP
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BaseArchiveManager
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LoopPivotsCAP
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ParatopeSiteConstraintMoverCAP
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rosetta.core.scoring.rna._core_scoring_rna_
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AddHydrogensCAP
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AddHydrogensCreator
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ParatopeSiteConstraintMoverCreatorCAP
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AddHydrogensCreatorAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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AddHydrogensCreatorCAP
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AtomCountFilter
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AtomCountFilterAP
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AtomCountFilterCAP
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AtomCountFilterCreator
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AntibodyDesignModelerAP
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ChainExistsFilter
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AntibodyDesignModelerCAP
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ChainExistsFilterAP
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AntibodyDesignMoverAP
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ChainExistsFilterCAP
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AntibodyDesignMoverCAP
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ChainExistsFilterCreator
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AntibodyDesignMoverCreatorAP
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ChainExistsFilterCreatorAP
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AntibodyDesignMoverCreatorCAP
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ChainExistsFilterCreatorCAP
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CompleteConnectionsFilter
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AntibodyDesignProtocolCAP
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rosetta.core.scoring.rna._core_scoring_rna_
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CompleteConnectionsFilterAP
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AntibodyDesignProtocolCreatorAP
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CompleteConnectionsFilterCAP
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AntibodyDesignProtocolCreatorCAP
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rosetta.core.scoring.rna._core_scoring_rna_
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CompleteConnectionsFilterCreator
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AntibodySeqDesignTFCreator
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CompleteConnectionsFilterCreatorAP
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AntibodySeqDesignTFCreatorAP
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CompleteConnectionsFilterCreatorCAP
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AntibodySeqDesignTFCreatorCAP
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rosetta.core.io.silent._core_io_silent_
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CompoundTranslate
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CDRGraftDesignOptions
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CompoundTranslateAP
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CDRGraftDesignOptionsAP
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CompoundTranslateCAP
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CDRGraftDesignOptionsCAP
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CompoundTranslateCreator
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CDRGraftDesignOptionsParser
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rosetta.core.scoring.rna._core_scoring_rna_
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CompoundTranslateCreatorAP
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CDRGraftDesignOptionsParserAP
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rosetta.core.scoring.rna._core_scoring_rna_
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CompoundTranslateCreatorCAP
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CDRGraftDesignOptionsParserCAP
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CDRSeqDesignOptions
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rosetta.core.scoring.rna._core_scoring_rna_
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CDRSeqDesignOptionsAP
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rosetta.core.scoring.rna._core_scoring_rna_
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CDRSeqDesignOptionsCAP
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rosetta.protocols.stepwise.monte_carlo.rna._protocols_stepwise_monte_carlo_rna_
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CDRSeqDesignOptionsParser
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rosetta.core.scoring.rna._core_scoring_rna_
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CDRSeqDesignOptionsParserAP
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rosetta.core.scoring.rna._core_scoring_rna_
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CDRSeqDesignOptionsParserCAP
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rosetta.protocols.rigid._protocols_rigid_
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DistributionMap
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MutantPosition
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rosetta.protocols.rigid._protocols_rigid_
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DistributionMapAP
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MutantPositionAP
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rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
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DistributionMapCAP
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MutantPositionCAP
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FinalMinimizer
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MutateFrameworkForClusterAP
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rosetta.protocols.features._protocols_features_
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FinalMinimizerAP
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rosetta.protocols.features._protocols_features_
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FinalMinimizerCAP
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MutateFrameworkForClusterCreatorAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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FinalMinimizerCreator
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MutateFrameworkForClusterCreatorCAP
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rosetta.core.pack.dunbrack._core_pack_dunbrack_
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FinalMinimizerCreatorAP
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PDBNumbering
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rosetta.protocols.dna._protocols_dna_
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FinalMinimizerCreatorCAP
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PDBNumberingAP
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rosetta.protocols.RotamerDump._protocols_RotamerDump_
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GrowLigand
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PDBNumberingCAP
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rosetta.core.pack.task.operation._core_pack_task_operation_
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GrowLigandAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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rosetta.core.pack.task.operation._core_pack_task_operation_
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GrowLigandCAP
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rosetta.protocols.features._protocols_features_
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GrowLigandCreator
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rosetta.protocols.features._protocols_features_
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GrowLigandCreatorAP
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AddCDRProfileSetsOperationAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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GrowLigandCreatorCAP
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AddCDRProfileSetsOperationCAP
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HBondAcceptorFilter
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AddCDRProfilesOperationAP
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rosetta.protocols.rotamer_recovery._protocols_rotamer_recovery_
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HBondAcceptorFilterAP
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AddCDRProfilesOperationCAP
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rosetta.protocols.features._protocols_features_
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HBondAcceptorFilterCAP
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DisableAntibodyRegionOperationAP
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rosetta.protocols.features._protocols_features_
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HBondAcceptorFilterCreator
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DisableAntibodyRegionOperationCAP
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rosetta.protocols.rotamer_recovery._protocols_rotamer_recovery_
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HBondAcceptorFilterCreatorAP
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HBondAcceptorFilterCreatorCAP
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HBondDonorFilter
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HBondDonorFilterAP
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HBondDonorFilterCAP
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HBondDonorFilterCreator
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HBondDonorFilterCreatorAP
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HeavyAtomFilterCAP
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LoopRlxMoverAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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__CPP_RRProtocolMoverCreator__
(in
rosetta.protocols.rotamer_recovery._protocols_rotamer_recovery_
)
__init__()
(in
LigandAreaLoaderCreator
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
__CPP_RRProtocolPackRotamers__
(in
rosetta.protocols.rotamer_recovery._protocols_rotamer_recovery_
)
__init__()
(in
LigandAreaLoaderCreatorAP
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
__CPP_RRProtocolPackRotamersCreator__
(in
rosetta.protocols.rotamer_recovery._protocols_rotamer_recovery_
)
__init__()
(in
LigandAreaLoaderCreatorCAP
)
__instance_size__
(in
BranchAngleOptimizer
)
__CPP_RRProtocolReferenceStructure__
(in
rosetta.protocols.rotamer_recovery._protocols_rotamer_recovery_
)
__init__()
(in
LigandBaseProtocol
)
__instance_size__
(in
BranchAngleOptimizerAP
)
__CPP_RRProtocolReferenceStructureCreator__
(in
rosetta.protocols.rotamer_recovery._protocols_rotamer_recovery_
)
__init__()
(in
LigandBaseProtocolAP
)
__instance_size__
(in
BranchAngleOptimizerCAP
)
__CPP_RRProtocolRelax__
(in
rosetta.protocols.rotamer_recovery._protocols_rotamer_recovery_
)
__init__()
(in
LigandBaseProtocolCAP
)
__instance_size__
(in
BranchCoef1
)
__CPP_RRProtocolRelaxCreator__
(in
rosetta.protocols.rotamer_recovery._protocols_rotamer_recovery_
)
__init__()
(in
LigandDesign
)
__instance_size__
(in
BranchCoef1AP
)
__CPP_RRProtocolRotamerTrials__
(in
rosetta.protocols.rotamer_recovery._protocols_rotamer_recovery_
)
__init__()
(in
LigandDesignAP
)
__instance_size__
(in
BranchCoef1CAP
)
__CPP_RRProtocolRotamerTrialsCreator__
(in
rosetta.protocols.rotamer_recovery._protocols_rotamer_recovery_
)
__init__()
(in
LigandDesignCAP
)
__instance_size__
(in
BranchCoef2AP
)
__CPP_RRProtocolRTMin__
(in
rosetta.protocols.rotamer_recovery._protocols_rotamer_recovery_
)
__init__()
(in
LigandDesignCreator
)
__instance_size__
(in
BranchCoef2CAP
)
__CPP_RRProtocolRTMinCreator__
(in
rosetta.protocols.rotamer_recovery._protocols_rotamer_recovery_
)
__init__()
(in
LigandDesignCreatorAP
)
__instance_size__
(in
BranchParam1
)
__CPP_RRReporter__
(in
rosetta.protocols.rotamer_recovery._protocols_rotamer_recovery_
)
__init__()
(in
LigandDesignCreatorCAP
)
__instance_size__
(in
BranchParam1AP
)
__CPP_RRReporterCreator__
(in
rosetta.protocols.rotamer_recovery._protocols_rotamer_recovery_
)
__init__()
(in
LigandDockProtocol
)
__instance_size__
(in
BranchParam1CAP
)
__CPP_RRReporterHuman__
(in
rosetta.protocols.rotamer_recovery._protocols_rotamer_recovery_
)
__init__()
(in
LigandDockProtocolAP
)
__instance_size__
(in
BranchParam2AP
)
__CPP_RRReporterHumanCreator__
(in
rosetta.protocols.rotamer_recovery._protocols_rotamer_recovery_
)
__init__()
(in
LigandDockProtocolCAP
)
__instance_size__
(in
BranchParam2CAP
)
__CPP_RRReporterSimple__
(in
rosetta.protocols.rotamer_recovery._protocols_rotamer_recovery_
)
__init__()
(in
Ligand_info
)
__instance_size__
(in
AsyncMPITemperingBaseAP
)
__CPP_RRReporterSimpleCreator__
(in
rosetta.protocols.rotamer_recovery._protocols_rotamer_recovery_
)
__init__()
(in
Ligand_infoAP
)
__instance_size__
(in
AsyncMPITemperingBaseCAP
)
__CPP_RRReporterSQLite__
(in
rosetta.protocols.rotamer_recovery._protocols_rotamer_recovery_
)
__init__()
(in
Ligand_infoCAP
)
__instance_size__
(in
BiasEnergyAP
)
__CPP_RRReporterSQLiteCreator__
(in
rosetta.protocols.rotamer_recovery._protocols_rotamer_recovery_
)
__init__()
(in
MinimizeBackbone
)
__instance_size__
(in
BiasEnergyCAP
)
__CPP_RuntimeFeatures__
(in
rosetta.protocols.features._protocols_features_
)
__init__()
(in
MinimizeBackboneAP
)
__instance_size__
(in
BiasedMonteCarloAP
)
__CPP_RuntimeFeaturesCreator__
(in
rosetta.protocols.features._protocols_features_
)
__init__()
(in
MinimizeBackboneCAP
)
__instance_size__
(in
BiasedMonteCarloCAP
)
__CPP_SA_Energy__
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
__init__()
(in
MinimizeBackboneCreator
)
__instance_size__
(in
CanonicalSamplingMoverAP
)
__CPP_SA_EnergyCreator__
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
__init__()
(in
MinimizeBackboneCreatorAP
)
__instance_size__
(in
CanonicalSamplingMoverCAP
)
__CPP_SaltBridgeFeatures__
(in
rosetta.protocols.features._protocols_features_
)
__init__()
(in
MinimizeBackboneCreatorCAP
)
__instance_size__
(in
DbTrajectoryReader
)
__CPP_SaltBridgeFeaturesCreator__
(in
rosetta.protocols.features._protocols_features_
)
__init__()
(in
MinimizeLigand
)
__instance_size__
(in
DbTrajectoryReaderAP
)
__CPP_SameChiBinComboGrouper__
(in
rosetta.protocols.match.output._protocols_match_output_
)
__init__()
(in
MinimizeLigandAP
)
__instance_size__
(in
DbTrajectoryReaderCAP
)
__CPP_SameRotamerComboGrouper__
(in
rosetta.protocols.match.output._protocols_match_output_
)
__init__()
(in
MinimizeLigandCAP
)
__instance_size__
(in
DbTrajectoryRecorder
)
__CPP_SameSequenceAndDSPositionGrouper__
(in
rosetta.protocols.match.output._protocols_match_output_
)
__init__()
(in
MolarMassFilter
)
__instance_size__
(in
DbTrajectoryRecorderAP
)
__CPP_SameSequenceGrouper__
(in
rosetta.protocols.match.output._protocols_match_output_
)
__init__()
(in
MolarMassFilterAP
)
__instance_size__
(in
DbTrajectoryRecorderCAP
)
__CPP_SampleApplier__
(in
rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
)
__init__()
(in
MolarMassFilterCAP
)
__instance_size__
(in
DbTrajectoryRecorderCreatorAP
)
__CPP_SandwichFeatures__
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
__init__()
(in
MolarMassFilterCreator
)
__instance_size__
(in
DbTrajectoryRecorderCreatorCAP
)
__CPP_SandwichFeaturesCreator__
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
__init__()
(in
MolarMassFilterCreatorAP
)
__instance_size__
(in
FixedTemperatureControllerAP
)
__CPP_SaneDockingProtocol__
(in
rosetta.protocols.docking.stateless._protocols_docking_stateless_
)
__init__()
(in
MolarMassFilterCreatorCAP
)
__instance_size__
(in
FixedTemperatureControllerCAP
)
__CPP_SaneMinMover__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
__init__()
(in
MolecularMassFilter
)
__instance_size__
(in
HamiltonianExchange
)
__CPP_SaneMinMoverCreator__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
__init__()
(in
MolecularMassFilterAP
)
__instance_size__
(in
HamiltonianExchangeAP
)
__CPP_SasaMethod__
(in
rosetta.core.scoring.sasa._core_scoring_sasa_
)
__init__()
(in
MolecularMassFilterCAP
)
__instance_size__
(in
HamiltonianExchangeCAP
)
__CPP_SaveAndRetrieveSidechains__
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
__init__()
(in
MolecularMassFilterCreator
)
__instance_size__
(in
HamiltonianExchangeCreatorAP
)
__CPP_SaveAndRetrieveSidechainsCreator__
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
__init__()
(in
MolecularMassFilterCreatorAP
)
__instance_size__
(in
HamiltonianExchangeCreatorCAP
)
__CPP_SavePoseConstraintToFileFilter__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
MolecularMassFilterCreatorCAP
)
__instance_size__
(in
MetricRecorderAP
)
__CPP_SavePoseConstraintToFileFilterCreator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
MoveMapBuilder
)
__instance_size__
(in
MetricRecorderCAP
)
__CPP_SavePoseMover__
(in
rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
)
__init__()
(in
MoveMapBuilderAP
)
__instance_size__
(in
MetricRecorderCreatorAP
)
__CPP_SavePoseMoverCreator__
(in
rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
)
__init__()
(in
MoveMapBuilderCAP
)
__instance_size__
(in
MetricRecorderCreatorCAP
)
__CPP_SaveResfileToDiskFilter__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
MoveMapBuilderLoader
)
__instance_size__
(in
MetropolisHastingsMoverAP
)
__CPP_SaveResfileToDiskFilterCreator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
MoveMapBuilderLoaderAP
)
__instance_size__
(in
MetropolisHastingsMoverCAP
)
__CPP_SAXSEnergy__
(in
rosetta.core.scoring.saxs._core_scoring_saxs_
)
__init__()
(in
MoveMapBuilderLoaderCAP
)
__instance_size__
(in
MetropolisHastingsMoverCreatorAP
)
__CPP_SAXSEnergyCreator__
(in
rosetta.core.scoring.saxs._core_scoring_saxs_
)
__init__()
(in
MoveMapBuilderLoaderCreator
)
__instance_size__
(in
MetropolisHastingsMoverCreatorCAP
)
__CPP_SAXSEnergyCreatorCEN__
(in
rosetta.core.scoring.saxs._core_scoring_saxs_
)
__init__()
(in
MoveMapBuilderLoaderCreatorAP
)
__instance_size__
(in
MultiTemperatureTrialCounter
)
__CPP_SAXSEnergyCreatorFA__
(in
rosetta.core.scoring.saxs._core_scoring_saxs_
)
__init__()
(in
MoveMapBuilderLoaderCreatorCAP
)
__instance_size__
(in
MultiTemperatureTrialCounterAP
)
__CPP_SAXSScoreFilter__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
RandomConformerMover
)
__instance_size__
(in
MultiTemperatureTrialCounterCAP
)
__CPP_ScaffoldBuildPoint__
(in
rosetta.protocols.match.upstream._protocols_match_upstream_
)
__init__()
(in
RandomConformerMoverAP
)
__instance_size__
(in
PDBTrajectoryRecorder
)
__CPP_ScalarWeightedFunc__
(in
rosetta.core.scoring.func._core_scoring_func_
)
__init__()
(in
RandomConformerMoverCAP
)
__instance_size__
(in
PDBTrajectoryRecorderAP
)
__CPP_ScaleMapIntensities__
(in
rosetta.protocols.electron_density._protocols_electron_density_
)
__init__()
(in
RandomConformers
)
__instance_size__
(in
PDBTrajectoryRecorderCAP
)
__CPP_ScaleMapIntensitiesCreator__
(in
rosetta.protocols.electron_density._protocols_electron_density_
)
__init__()
(in
RandomConformersAP
)
__instance_size__
(in
PDBTrajectoryRecorderCreatorAP
)
__CPP_SCAN__
(in
rosetta.core.pack.task._core_pack_task_
)
__init__()
(in
RandomConformersCAP
)
__instance_size__
(in
PDBTrajectoryRecorderCreatorCAP
)
__CPP_SchemePlaceMotifsMover__
(in
rosetta.protocols.matdes._protocols_matdes_
)
__init__()
(in
RandomConformersCreator
)
__instance_size__
(in
ParallelTemperingAP
)
__CPP_SchemePlaceMotifsMoverCreator__
(in
rosetta.protocols.matdes._protocols_matdes_
)
__init__()
(in
RandomConformersCreatorAP
)
__instance_size__
(in
ParallelTemperingCAP
)
__CPP_ScoreCutoffFilter__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
RandomConformersCreatorCAP
)
__instance_size__
(in
ParallelTemperingCreatorAP
)
__CPP_ScoreCutoffFilterCreator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
ResidueTorsionRestraints
)
__instance_size__
(in
ParallelTemperingCreatorCAP
)
__CPP_ScoreEValuator__
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
__init__()
(in
ResidueTorsionRestraintsAP
)
__instance_size__
(in
ProgressBarObserverAP
)
__CPP_ScoreEvaluator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
ResidueTorsionRestraintsCAP
)
__instance_size__
(in
ProgressBarObserverCAP
)
__CPP_ScoreFileSilentStruct__
(in
rosetta.core.io.silent._core_io_silent_
)
__init__()
(in
RigidSearchMover
)
__instance_size__
(in
ProgressBarObserverCreatorAP
)
__CPP_ScoreFileSilentStructCreator__
(in
rosetta.core.io.silent._core_io_silent_
)
__init__()
(in
RigidSearchMoverAP
)
__instance_size__
(in
ProgressBarObserverCreatorCAP
)
__CPP_ScoreFunction__
(in
rosetta.core.scoring._core_scoring_
)
__init__()
(in
RigidSearchMoverCAP
)
__instance_size__
(in
SidechainMetropolisHastingsMoverAP
)
__CPP_ScoreFunctionFeatures__
(in
rosetta.protocols.features._protocols_features_
)
__init__()
(in
Rotate
)
__instance_size__
(in
SidechainMetropolisHastingsMoverCAP
)
__CPP_ScoreFunctionFeaturesCreator__
(in
rosetta.protocols.features._protocols_features_
)
__init__()
(in
RotateAP
)
__instance_size__
(in
SidechainMetropolisHastingsMoverCreatorAP
)
__CPP_ScoreFunctionLoader__
(in
rosetta.protocols.jd2.parser._protocols_jd2_parser_
)
__init__()
(in
RotateCAP
)
__instance_size__
(in
SidechainMetropolisHastingsMoverCreatorCAP
)
__CPP_ScoreFunctionLoaderCreator__
(in
rosetta.protocols.jd2.parser._protocols_jd2_parser_
)
__init__()
(in
RotateCreator
)
__instance_size__
(in
SilentTrajectoryRecorder
)
__CPP_ScoreJumpFileSilentStruct__
(in
rosetta.core.io.silent._core_io_silent_
)
__init__()
(in
RotateCreatorAP
)
__instance_size__
(in
SilentTrajectoryRecorderAP
)
__CPP_ScoreJumpFileSilentStructCreator__
(in
rosetta.core.io.silent._core_io_silent_
)
__init__()
(in
RotateCreatorCAP
)
__instance_size__
(in
SilentTrajectoryRecorderCAP
)
__CPP_ScoreMover__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
__init__()
(in
Rotate_info
)
__instance_size__
(in
SilentTrajectoryRecorderCreatorAP
)
__CPP_ScoreMoverCreator__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
__init__()
(in
Rotate_infoAP
)
__instance_size__
(in
SilentTrajectoryRecorderCreatorCAP
)
__CPP_ScoreOnlyJobOutputter__
(in
rosetta.protocols.jd2._protocols_jd2_
)
__init__()
(in
Rotate_infoCAP
)
__instance_size__
(in
SimulatedTemperingAP
)
__CPP_ScoreOnlyJobOutputterCreator__
(in
rosetta.protocols.jd2._protocols_jd2_
)
__init__()
(in
Rotates
)
__instance_size__
(in
SimulatedTemperingCAP
)
__CPP_Scorer__
(in
rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
)
__init__()
(in
RotatesAP
)
__instance_size__
(in
SimulatedTemperingCreatorAP
)
__CPP_ScoreStructJSON__
(in
rosetta.core.io.raw_data._core_io_raw_data_
)
__init__()
(in
RotatesCAP
)
__instance_size__
(in
SimulatedTemperingCreatorCAP
)
__CPP_ScoreStructText__
(in
rosetta.core.io.raw_data._core_io_raw_data_
)
__init__()
(in
RotatesCreator
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
__CPP_ScoreTypeFeatures__
(in
rosetta.protocols.features._protocols_features_
)
__init__()
(in
RotatesCreatorAP
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
__CPP_ScoreTypeFeaturesCreator__
(in
rosetta.protocols.features._protocols_features_
)
__init__()
(in
RotatesCreatorCAP
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
__CPP_ScoreTypeFilter__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
__instance_size__
(in
TemperatureControllerAP
)
__CPP_ScoreTypeFilterCreator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
__instance_size__
(in
TemperatureControllerCAP
)
__CPP_ScoringScheme__
(in
rosetta.core.sequence._core_sequence_
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
__instance_size__
(in
TemperingBaseAP
)
__CPP_ScoringSecMatchRPE__
(in
rosetta.protocols.match.downstream._protocols_match_downstream_
)
__init__()
(in
SlideTogether
)
__instance_size__
(in
TemperingBaseCAP
)
__CPP_ScreeningFeatures__
(in
rosetta.protocols.features._protocols_features_
)
__init__()
(in
SlideTogetherAP
)
__instance_size__
(in
ThermodynamicMoverAP
)
__CPP_ScreeningFeaturesCreator__
(in
rosetta.protocols.features._protocols_features_
)
__init__()
(in
SlideTogetherCAP
)
__instance_size__
(in
ThermodynamicMoverCAP
)
__CPP_ScreeningJobInputter__
(in
rosetta.protocols.jd2._protocols_jd2_
)
__init__()
(in
SlideTogetherCreator
)
__instance_size__
(in
ThermodynamicObserverAP
)
__CPP_ScreeningJobInputterCreator__
(in
rosetta.protocols.jd2._protocols_jd2_
)
__init__()
(in
SlideTogetherCreatorAP
)
__instance_size__
(in
ThermodynamicObserverCAP
)
__CPP_ScriptCM__
(in
rosetta.protocols.environment._protocols_environment_
)
__init__()
(in
SlideTogetherCreatorCAP
)
__instance_size__
(in
TrajectoryRecorderAP
)
__CPP_ScriptCMCreator__
(in
rosetta.protocols.environment._protocols_environment_
)
__init__()
(in
StartFrom
)
__instance_size__
(in
TrajectoryRecorderCAP
)
__CPP_SearchPattern__
(in
rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_
)
__init__()
(in
StartFromAP
)
__instance_size__
(in
TrialCounterObserverAP
)
__CPP_SearchPatternExpansion__
(in
rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_
)
__init__()
(in
StartFromCAP
)
__instance_size__
(in
TrialCounterObserverCAP
)
__CPP_SearchPatternRotSetOp__
(in
rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_
)
__init__()
(in
StartFromCreator
)
__instance_size__
(in
TrialCounterObserverCreatorAP
)
__CPP_SearchPatternTransform__
(in
rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_
)
__init__()
(in
StartFromCreatorAP
)
__instance_size__
(in
TrialCounterObserverCreatorCAP
)
__CPP_SecMatchResiduePairEvaluator__
(in
rosetta.protocols.match.downstream._protocols_match_downstream_
)
__init__()
(in
StartFromCreatorCAP
)
__instance_size__
(in
WTEBiasEnergy
)
__CPP_SecondaryIdentity__
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
__init__()
(in
TetherLigand
)
__instance_size__
(in
WTEBiasEnergyAP
)
__CPP_SecondaryMatcherToDownstreamResidue__
(in
rosetta.protocols.match.downstream._protocols_match_downstream_
)
__init__()
(in
TetherLigandAP
)
__instance_size__
(in
WTEBiasEnergyCAP
)
__CPP_SecondaryMatcherToUpstreamResidue__
(in
rosetta.protocols.match.downstream._protocols_match_downstream_
)
__init__()
(in
TetherLigandCAP
)
__instance_size__
(in
DataBuffer
)
__CPP_SecondaryMatchUpstreamResProcessor__
(in
rosetta.protocols.match.downstream._protocols_match_downstream_
)
__init__()
(in
Transform
)
__instance_size__
(in
DataBufferAP
)
__CPP_SecondarySimilarity__
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
__init__()
(in
TransformAP
)
__instance_size__
(in
DataBufferCAP
)
__CPP_SecondaryStructureCountFilter__
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
__init__()
(in
TransformCAP
)
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TransformCreator
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EXCN_Heat_ConvergedCAP
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rosetta.core.scoring.methods._core_scoring_methods_
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TransformCreatorAP
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EXCN_Pool_ConvergedAP
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rosetta.core.scoring.methods._core_scoring_methods_
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TransformCreatorCAP
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EXCN_Pool_ConvergedCAP
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HPool_RMSDAP
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HPool_RMSDCAP
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Transform_infoCAP
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Heat_ConvergenceCheckAP
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Heat_ConvergenceCheckCAP
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rosetta.protocols.match._protocols_match_
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TranslateAP
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HierarchicalLevelAP
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TranslateCAP
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HierarchicalLevelCAP
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TranslateCreator
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PoolData
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TranslateCreatorAP
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PoolDataAP
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TranslateCreatorCAP
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PoolDataCAP
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Pool_ConvergenceCheckAP
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Translate_infoAP
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Pool_ConvergenceCheckCAP
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rosetta.core.fragment._core_fragment_
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Translate_infoCAP
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Pool_EvaluatorAP
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UnconstrainedTorsionsMover
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Pool_EvaluatorCAP
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UnconstrainedTorsionsMoverAP
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Pool_RMSD
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UnconstrainedTorsionsMoverCAP
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Pool_RMSDAP
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WriteLigandMolFile
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Pool_RMSDCAP
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rosetta.protocols.seeded_abinitio._protocols_seeded_abinitio_
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WriteLigandMolFileAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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WriteLigandMolFileCAP
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WriteLigandMolFileCreator
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WriteLigandMolFileCreatorAP
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CartesianAtom
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WriteLigandMolFileCreatorCAP
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CartesianAtomAP
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__CPP_AddHydrogen__
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CartesianAtomCAP
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MD_Angle
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__CPP_AddHydrogens__
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MD_AngleAP
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rosetta.core.scoring._core_scoring_
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__CPP_AtomCountFilterCreator__
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MD_AngleCAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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__CPP_AtomCountFilter__
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MD_Bond
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rosetta.protocols.simple_filters._protocols_simple_filters_
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MD_BondAP
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rosetta.core.chemical._core_chemical_
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__CPP_ChainExistsFilter__
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MD_BondCAP
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rosetta.core.chemical._core_chemical_
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__CPP_CompleteConnectionsFilterCreator__
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MD_HarmonicDihedral
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rosetta.core.chemical._core_chemical_
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__CPP_CompleteConnectionsFilter__
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MD_HarmonicDihedralAP
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rosetta.core.chemical._core_chemical_
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MD_HarmonicDihedralCAP
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rosetta.core.chemical._core_chemical_
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__CPP_CompoundTranslate__
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MolecularDynamics
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rosetta.core.chemical._core_chemical_
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__CPP_ComputeLigandRDFCreator__
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rosetta.core.chemical._core_chemical_
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__CPP_ComputeLigandRDF__
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rosetta.core.chemical._core_chemical_
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__CPP_FinalMinimizerCreator__
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CheckPointer
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rosetta.core.chemical._core_chemical_
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__CPP_FinalMinimizer__
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CheckPointerAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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__CPP_GrowLigandCreator__
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CheckPointerCAP
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__CPP_GrowLigand__
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FileBuffer
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__CPP_HBondAcceptorFilterCreator__
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FileBufferAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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__CPP_HBondAcceptorFilter__
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FileBufferCAP
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rosetta.protocols.dna._protocols_dna_
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__CPP_HBondDonorFilterCreator__
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TimerAP
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rosetta.protocols.dna._protocols_dna_
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__CPP_HBondDonorFilter__
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TimerCAP
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rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
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__CPP_HeavyAtomFilterCreator__
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APCluster
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__CPP_HeavyAtomFilter__
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APClusterAP
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rosetta.core.sequence._core_sequence_
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__CPP_HighResDockerCreator__
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APClusterCAP
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rosetta.protocols.topology_broker.claims._protocols_topology_broker_claims_
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__CPP_HighResDocker__
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AssignToClustersMoverAP
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rosetta.protocols.constraints_additional._protocols_constraints_additional_
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__CPP_InterfaceBuilderLoaderCreator__
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AssignToClustersMoverCAP
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rosetta.protocols.constraints_additional._protocols_constraints_additional_
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__CPP_InterfaceBuilderLoader__
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Cluster
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rosetta.core.sequence._core_sequence_
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__CPP_InterfaceScoreCalculatorCreator__
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ClusterAP
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rosetta.protocols.constraints_additional._protocols_constraints_additional_
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__CPP_InterfaceScoreCalculator__
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ClusterBaseAP
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rosetta.protocols.constraints_additional._protocols_constraints_additional_
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__CPP_LigandAreaLoaderCreator__
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ClusterBaseCAP
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rosetta.core.sequence._core_sequence_
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__CPP_LigandAreaLoader__
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ClusterCAP
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rosetta.core.sequence._core_sequence_
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__CPP_LigandDesignCreator__
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ClusterPhilStyleAP
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rosetta.core.scoring.methods._core_scoring_methods_
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ClusterPhilStyleCAP
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rosetta.core.scoring.methods._core_scoring_methods_
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ClusterPhilStyle_LoopAP
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rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
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__CPP_MinimizeBackbone__
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ClusterPhilStyle_LoopCAP
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rosetta.protocols.moves._protocols_moves_
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__CPP_MinimizeLigand__
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ClusterPhilStyle_PoseReporterAP
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rosetta.core.sequence._core_sequence_
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ClusterPhilStyle_PoseReporterCAP
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DataPoint
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rosetta.core.scoring.constraints._core_scoring_constraints_
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__CPP_MolecularMassFilterCreator__
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DataPointAP
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rosetta.core.sequence._core_sequence_
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__CPP_MolecularMassFilter__
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DataPointCAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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EnsembleConstraintsAP
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__CPP_MoveMapBuilderLoader__
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EnsembleConstraintsCAP
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rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
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__CPP_RandomConformerMover__
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EnsembleConstraints_SimpleAP
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__CPP_RandomConformersCreator__
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EnsembleConstraints_SimpleCAP
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rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
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__CPP_RandomConformers__
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__CPP_ResidueTorsionRestraints__
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__CPP_RigidSearchMover__
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rosetta.protocols.fldsgn.potentials._protocols_fldsgn_potentials_
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__CPP_RotateCreator__
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GatherPosesMoverAP
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rosetta.core.chemical._core_chemical_
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__CPP_Rotate__
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GatherPosesMoverCAP
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__CPP_RotatesCreator__
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__CPP_Rotates__
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rosetta.core.chemical._core_chemical_
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__CPP_SlideTogetherCreator__
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__CPP_SlideTogether__
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CoarseRNA_FragmentsCAP
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__CPP_StartFrom__
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AlignRmsdTargetEvaluatorCreatorAP
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__CPP_Transform__
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AlignRmsdTargetEvaluatorCreatorCAP
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rosetta.core.chemical._core_chemical_
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Align_RmsdEvaluatorAP
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__CPP_UnconstrainedTorsionsMover__
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Align_RotamerEvaluatorAP
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__CPP_WriteLigandMolFileCreator__
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AlignmentCluster
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AtomPairData
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AtomPairDataAP
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AtomPairDataCAP
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RDFBase
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RDFBaseAP
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RDFBaseCAP
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GenericJobInputterCAP
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rosetta.protocols.cryst._protocols_cryst_
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RDFBinaryHbondCreator
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GenericJobInputterCreatorAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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RDFBinaryHbondCreatorAP
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GenericJobInputterCreatorCAP
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RDFBinaryHbondCreatorCAP
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IgnoreSubsetConstraintSetAP
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rosetta.core.pack.task.operation._core_pack_task_operation_
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RDFBinaryHbondFunction
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IgnoreSubsetConstraintSetCAP
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rosetta.core.pack.task.operation._core_pack_task_operation_
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RDFBinaryHbondFunctionAP
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LoopRelaxMoverAP
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rosetta.core.pack.task.operation._core_pack_task_operation_
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RDFBinaryHbondFunctionCAP
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LoopRelaxMoverCAP
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rosetta.protocols.fldsgn.potentials._protocols_fldsgn_potentials_
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RDFBinaryOrbitalFunction
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LoopRelaxMoverCreatorAP
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rosetta.protocols.fldsgn.potentials._protocols_fldsgn_potentials_
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RDFBinaryOrbitalFunctionAP
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LoopRelaxMoverCreatorCAP
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rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
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RDFBinaryOrbitalFunctionCAP
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LoopRelaxThreadingMoverAP
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RDFBinaryOrbitalFunctionCreator
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LoopRelaxThreadingMoverCAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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RDFBinaryOrbitalFunctionCreatorAP
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RDFBinaryOrbitalFunctionCreatorCAP
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MultiThreadingMoverCAP
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rosetta.protocols.electron_density._protocols_electron_density_
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RDFChargeCreator
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PartialThreadingMoverAP
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rosetta.protocols.electron_density._protocols_electron_density_
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RDFChargeCreatorAP
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rosetta.protocols.fibril._protocols_fibril_
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RDFChargeCreatorCAP
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rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
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RDFChargeFunction
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rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
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RDFChargeFunctionAP
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RDFChargeFunctionCAP
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RDFElecCreator
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RDFElecCreatorAP
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StealLigandMoverAP
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RDFElecCreatorCAP
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rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
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RDFElecFunction
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rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
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RDFElecFunctionAP
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StealSideChainsMoverCAP
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RDFElecFunctionCAP
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ThreadingJobAP
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rosetta.protocols.pb_potential._protocols_pb_potential_
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RDFEtableCreator
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ThreadingJobCAP
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rosetta.protocols.toolbox._protocols_toolbox_
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RDFEtableCreatorAP
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ThreadingJobInputterAP
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RDFEtableCreatorCAP
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ThreadingJobInputterCAP
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RDFEtableFunction
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ThreadingJobInputterCreatorAP
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RDFEtableFunctionAP
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ThreadingJobInputterCreatorCAP
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rosetta.core.scoring.sc._core_scoring_sc_
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RDFEtableFunctionCAP
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ThreadingMoverAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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RDFFunctionCreator
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ThreadingMoverCAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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RDFFunctionCreatorAP
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ResidueFeature
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rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
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RDFFunctionCreatorCAP
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ResidueFeatureAP
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rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
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RDFFunctionFactory
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ResidueFeatureCAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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RDFFunctionFactoryAP
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ResidueFeatureFactory
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rosetta.protocols.simple_moves._protocols_simple_moves_
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RDFFunctionFactoryCAP
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ResidueFeatureFactoryAP
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rosetta.protocols.jumping._protocols_jumping_
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RDFHbondCreator
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ResidueFeatureFactoryCAP
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rosetta.protocols.fldsgn._protocols_fldsgn_
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RDFHbondCreatorAP
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SSFeatureAP
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rosetta.protocols.fldsgn._protocols_fldsgn_
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RDFHbondCreatorCAP
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SSFeatureCAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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RDFHbondFunction
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TorsionFeatureAP
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rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
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RDFHbondFunctionAP
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TorsionFeatureCAP
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rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
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RDFHbondFunctionCAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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RDFOrbitalFunction
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AmbiguousMultiConstraintCAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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RDFOrbitalFunctionAP
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BindingSiteConstraintAP
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RDFOrbitalFunctionCAP
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BindingSiteConstraintCAP
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rosetta.core.scoring.methods._core_scoring_methods_
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RDFOrbitalFunctionCreator
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BindingSiteConstraintCreatorAP
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rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
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RDFOrbitalFunctionCreatorAP
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BindingSiteConstraintCreatorCAP
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rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
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RDFOrbitalFunctionCreatorCAP
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COMCoordinateConstraintAP
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rosetta.utility._utility_
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__CPP_RDFBase__
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COMCoordinateConstraintCAP
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rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_
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__CPP_RDFBinaryHbondCreator__
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CombinedConstraintEvaluatorAP
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__CPP_RDFBinaryHbondFunction__
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rosetta.protocols.simple_moves.sidechain_moves._protocols_simple_moves_sidechain_moves_
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__CPP_RDFBinaryOrbitalFunctionCreator__
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CombinedConstraintEvaluatorCreatorAP
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rosetta.protocols.simple_moves.sidechain_moves._protocols_simple_moves_sidechain_moves_
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__CPP_RDFBinaryOrbitalFunction__
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CombinedConstraintEvaluatorCreatorCAP
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__CPP_RDFChargeCreator__
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rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
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__CPP_RDFChargeFunction__
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rosetta.protocols.docking._protocols_docking_
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__CPP_RDFElecCreator__
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rosetta.protocols.simple_moves.sidechain_moves._protocols_simple_moves_sidechain_moves_
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__CPP_RDFElecFunction__
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__CPP_RDFEtableCreator__
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rosetta.protocols.simple_moves.sidechain_moves._protocols_simple_moves_sidechain_moves_
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__CPP_RDFEtableFunction__
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NamedAtomPairConstraintCreatorAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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__CPP_RDFHbondCreator__
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NamedAtomPairConstraintCreatorCAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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__CPP_RDFHbondFunction__
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rosetta.protocols.simple_filters._protocols_simple_filters_
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__CPP_RDFOrbitalFunctionCreator__
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rosetta.core.scoring.func._core_scoring_func_
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LoopBuildMover
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LoopBuildMoverCAP
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ContactMapAP
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LoopmodelWrapper
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ContactMapCAP
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ContactMapCreatorAP
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ContactMapCreatorCAP
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LoopmodelWrapperCreator
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LoopmodelWrapperCreatorAP
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LoopmodelWrapperCreatorCAP
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rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
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LoopBuilderCreatorCAP
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SetCrystWeightMoverAP
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SetCrystWeightMoverCAP
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rosetta.numeric._numeric_
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LoopModelerAP
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SetCrystWeightMoverCreatorAP
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__CPP_SingleResidueCenrotLibrary__
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rosetta.core.pack.dunbrack.cenrot._core_pack_dunbrack_cenrot_
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LoopModelerCAP
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SetCrystWeightMoverCreatorCAP
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rosetta.core.fragment._core_fragment_
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LoopModelerCreator
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SetRefinementOptionsMoverAP
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rosetta.core.optimization._core_optimization_
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LoopModelerCreatorAP
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SetRefinementOptionsMoverCAP
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rosetta.core.pack.dunbrack._core_pack_dunbrack_
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LoopModelerCreatorCAP
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SetRefinementOptionsMoverCreatorAP
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rosetta.protocols.evaluation._protocols_evaluation_
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LoopMover
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SetRefinementOptionsMoverCreatorCAP
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rosetta.protocols.evaluation._protocols_evaluation_
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LoopMoverAP
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TagPoseWithRefinementStatsMoverAP
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__CPP_SingleValuePoseEvaluator<long unsigned int>__
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rosetta.protocols.evaluation._protocols_evaluation_
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LoopMoverCAP
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TagPoseWithRefinementStatsMoverCAP
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rosetta.core.scoring.constraints._core_scoring_constraints_
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LoopProtocol
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TagPoseWithRefinementStatsMoverCreatorAP
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rosetta.core.scoring.constraints._core_scoring_constraints_
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LoopProtocolAP
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TagPoseWithRefinementStatsMoverCreatorCAP
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rosetta.core.scoring.constraints._core_scoring_constraints_
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LoopProtocolCAP
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UpdateSolventMoverAP
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rosetta.core.scoring.constraints._core_scoring_constraints_
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LoopProtocolCreator
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UpdateSolventMoverCAP
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rosetta.core.scoring.func._core_scoring_func_
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LoopProtocolCreatorAP
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UpdateSolventMoverCreatorAP
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rosetta.protocols.ligand_docking._protocols_ligand_docking_
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LoopProtocolCreatorCAP
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UpdateSolventMoverCreatorCAP
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rosetta.protocols.ligand_docking._protocols_ligand_docking_
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SingletonBase_T_core_chemical_ChemicalManager_T
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CreateAngleConstraintAP
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rosetta.protocols.loops.loop_closure.ccd._protocols_loops_loop_closure_ccd_
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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CreateAngleConstraintCAP
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rosetta.protocols.topology_broker.weights._protocols_topology_broker_weights_
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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CreateAngleConstraintCreatorAP
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rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
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ToolboxKeys
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CreateAngleConstraintCreatorCAP
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rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
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ToolboxKeysAP
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CreateDistanceConstraintAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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ToolboxKeysCAP
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CreateDistanceConstraintCAP
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__CPP_SmallMoverCreator__
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rosetta.protocols.simple_moves._protocols_simple_moves_
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__CPP_LoopBuilderCreator__
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CreateDistanceConstraintCreatorAP
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rosetta.core.scoring.methods._core_scoring_methods_
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__CPP_LoopBuilder__
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CreateDistanceConstraintCreatorCAP
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__CPP_SmoothCenPairEnergyCreator__
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rosetta.core.scoring.methods._core_scoring_methods_
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__CPP_LoopModelerCreator__
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CreateTorsionConstraintAP
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rosetta.core.scoring.methods._core_scoring_methods_
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__CPP_LoopModeler__
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CreateTorsionConstraintCAP
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rosetta.core.scoring.methods._core_scoring_methods_
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__CPP_LoopMover__
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CreateTorsionConstraintCreatorAP
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rosetta.protocols.topology_broker.weights._protocols_topology_broker_weights_
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__CPP_LoopProtocolCreator__
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CreateTorsionConstraintCreatorCAP
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rosetta.protocols.features._protocols_features_
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__CPP_LoopProtocol__
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DeclareBondAP
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rosetta.protocols.features._protocols_features_
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MinimizationRefiner
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DeclareBondCAP
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rosetta.core.scoring.func._core_scoring_func_
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MinimizationRefinerAP
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DeclareBondCreatorAP
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rosetta.core.scoring.func._core_scoring_func_
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MinimizationRefinerCAP
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DeclareBondCreatorCAP
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rosetta.protocols.kinematic_closure.solution_pickers._protocols_kinematic_closure_solution_pickers_
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MinimizationRefinerCreator
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PeptideStubMoverAP
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rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
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MinimizationRefinerCreatorAP
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PeptideStubMoverCAP
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rosetta.protocols.membrane.io._protocols_membrane_io_
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MinimizationRefinerCreatorCAP
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PeptideStubMoverCreatorAP
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rosetta.protocols.membrane.io._protocols_membrane_io_
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RepackingRefiner
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PeptideStubMoverCreatorCAP
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rosetta.protocols.membrane.io._protocols_membrane_io_
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RepackingRefinerAP
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ddGMoverAP
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rosetta.protocols.membrane.io._protocols_membrane_io_
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RepackingRefinerCAP
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ddGMoverCAP
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rosetta.core.conformation.membrane._core_conformation_membrane_
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RepackingRefinerCreator
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ExposedHydrophobicsFilterAP
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rosetta.protocols.scoring.methods._protocols_scoring_methods_
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RepackingRefinerCreatorAP
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ExposedHydrophobicsFilterCAP
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__CPP_SpecialRotamerEnergyCreator__
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rosetta.protocols.scoring.methods._protocols_scoring_methods_
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RepackingRefinerCreatorCAP
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ExposedHydrophobicsFilterCreatorAP
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rosetta.protocols.toolbox.rotamer_set_operations._protocols_toolbox_rotamer_set_operations_
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RotamerTrialsRefiner
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ExposedHydrophobicsFilterCreatorCAP
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rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
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RotamerTrialsRefinerAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
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RotamerTrialsRefinerCAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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__CPP_SphericalRotationSearchPattern__
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rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_
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RotamerTrialsRefinerCreator
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
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RotamerTrialsRefinerCreatorAP
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GreedyOptMutationMoverAP
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__CPP_SpinMoverCreator__
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rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
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RotamerTrialsRefinerCreatorCAP
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GreedyOptMutationMoverCAP
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__CPP_SplineFunc__
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rosetta.core.scoring.func._core_scoring_func_
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SingletonBase_T_core_chemical_ChemicalManager_T
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GreedyOptMutationMoverCreatorAP
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__CPP_SquarerootExpression__
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rosetta.numeric.expression_parser._numeric_expression_parser_
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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GreedyOptMutationMoverCreatorCAP
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__CPP_SquareWell2Func__
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rosetta.core.scoring.func._core_scoring_func_
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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ParetoOptMutationMoverAP
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__CPP_SquareWellFunc__
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rosetta.core.scoring.func._core_scoring_func_
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__CPP_MinimizationRefinerCreator__
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ParetoOptMutationMoverCAP
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__CPP_SS_Info2__
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rosetta.protocols.fldsgn.topology._protocols_fldsgn_topology_
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__CPP_MinimizationRefiner__
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ParetoOptMutationMoverCreatorAP
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__CPP_SS_Info__
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rosetta.core.scoring._core_scoring_
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__CPP_RepackingRefinerCreator__
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ParetoOptMutationMoverCreatorCAP
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__CPP_SS_Killhairpins_Info__
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rosetta.core.scoring._core_scoring_
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__CPP_RepackingRefiner__
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__instance_size__
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PointMutationCalculator
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__CPP_SSamountFilter__
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rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
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__CPP_RotamerTrialsRefinerCreator__
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PointMutationCalculatorAP
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__CPP_SSamountFilterCreator__
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rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
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__CPP_RotamerTrialsRefiner__
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PointMutationCalculatorCAP
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__CPP_SSFeature__
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rosetta.protocols.comparative_modeling.features._protocols_comparative_modeling_features_
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LegacyKicSampler
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SingletonBase_T_core_chemical_ChemicalManager_T
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__CPP_SSMotifFinder__
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rosetta.protocols.simple_filters._protocols_simple_filters_
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LegacyKicSamplerAP
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__instance_size__
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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__CPP_SSMotifFinderFilterCreator__
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rosetta.protocols.simple_filters._protocols_simple_filters_
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LegacyKicSamplerCAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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rosetta.core.scoring.rna._core_scoring_rna_
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LegacyKicSamplerCreator
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DNABase
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rosetta.core.scoring.rna._core_scoring_rna_
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LegacyKicSamplerCreatorAP
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DNABaseAP
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rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
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LegacyKicSamplerCreatorCAP
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DNABaseCAP
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rosetta.numeric.random._numeric_random_
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__CPP_LegacyKicSamplerCreator__
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DNABasepair
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rosetta.protocols.kinematic_closure.pivot_pickers._protocols_kinematic_closure_pivot_pickers_
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__CPP_LegacyKicSampler__
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DNABasepairAP
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rosetta.protocols.ligand_docking._protocols_ligand_docking_
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AcceptanceCheck
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DNABasepairCAP
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rosetta.protocols.ligand_docking._protocols_ligand_docking_
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AcceptanceCheckAP
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DNABasestep
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rosetta.protocols.match.output._protocols_match_output_
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AcceptanceCheckCAP
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DNABasestepAP
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rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
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LoopFilter
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DNABasestepCAP
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rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
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LoopFilterAP
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DNAParameters
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rosetta.protocols.simple_filters._protocols_simple_filters_
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LoopFilterCAP
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DNAParametersAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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LoopMoverGroup
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DNAParametersCAP
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(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
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LoopMoverGroupAP
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DesignProteinBackboneAroundDNAAP
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rosetta.protocols.stepwise.setup._protocols_stepwise_setup_
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LoopMoverGroupCAP
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DesignProteinBackboneAroundDNACAP
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rosetta.protocols.stepwise.setup._protocols_stepwise_setup_
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PrepareForCentroid
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DesignProteinBackboneAroundDNACreatorAP
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rosetta.protocols.stepwise.monte_carlo.mover._protocols_stepwise_monte_carlo_mover_
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PrepareForCentroidAP
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DesignProteinBackboneAroundDNACreatorCAP
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rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
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PrepareForCentroidCAP
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DnaChains
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rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
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PrepareForCentroidCreator
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DnaChainsAP
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PrepareForCentroidCreatorAP
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DnaChainsCAP
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rosetta.protocols.stepwise.setup._protocols_stepwise_setup_
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PrepareForCentroidCreatorCAP
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DnaDesignDef
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PrepareForFullatom
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DnaDesignDefAP
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rosetta.protocols.stepwise.modeler.protein._protocols_stepwise_modeler_protein_
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PrepareForFullatomAP
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DnaDesignDefCAP
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PrepareForFullatomCAP
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DnaInterfaceFinder
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PrepareForFullatomCreator
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DnaInterfaceFinderAP
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rosetta.protocols.stepwise.modeler.protein.loop_close._protocols_stepwise_modeler_protein_loop_close_
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PrepareForFullatomCreatorAP
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DnaInterfaceFinderCAP
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rosetta.protocols.stepwise.legacy.modeler.protein._protocols_stepwise_legacy_modeler_protein_
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PrepareForFullatomCreatorCAP
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DnaInterfaceMinMoverAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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DnaInterfaceMinMoverCAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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DnaInterfaceMinMoverCreatorAP
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rosetta.protocols.stepwise.legacy.modeler.rna._protocols_stepwise_legacy_modeler_rna_'
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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DnaInterfaceMinMoverCreatorCAP
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__CPP_AcceptanceCheck__
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DnaInterfaceMultiStateDesignAP
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__CPP_LoopFilter__
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DnaInterfaceMultiStateDesignCAP
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__CPP_LoopMoverGroup__
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DnaInterfaceMultiStateDesignCreatorAP
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__CPP_PrepareForCentroidCreator__
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DnaInterfaceMultiStateDesignCreatorCAP
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__CPP_PrepareForCentroid__
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DnaInterfacePackerAP
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rosetta.protocols.stepwise.sampler._protocols_stepwise_sampler_
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__CPP_PrepareForFullatomCreator__
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DnaInterfacePackerCAP
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rosetta.protocols.stepwise.sampler._protocols_stepwise_sampler_
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__CPP_PrepareForFullatom__
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DnaInterfacePackerCreatorAP
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__CPP_StepWiseSamplerSizedComb__
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rosetta.protocols.stepwise.sampler._protocols_stepwise_sampler_
)
__init__()
(in
BBData
)
__instance_size__
(in
DnaInterfacePackerCreatorCAP
)
__CPP_StepWiseScreener__
(in
rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
)
__init__()
(in
BBDataAP
)
__instance_size__
(in
DnaNeighbor
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__CPP_StepWiseWorkingParameters__
(in
rosetta.protocols.stepwise.modeler.working_parameters._protocols_stepwise_modeler_working_parameters_
)
__init__()
(in
BBDataCAP
)
__instance_size__
(in
DnaNeighborAP
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__CPP_StepWiseWorkingParametersSetup__
(in
rosetta.protocols.stepwise.legacy.modeler.rna._protocols_stepwise_legacy_modeler_rna_'
)
__init__()
(in
BBExtraData
)
__instance_size__
(in
DnaNeighborCAP
)
__CPP_STMStoredTask__
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
__init__()
(in
BBExtraDataAP
)
__instance_size__
(in
DnaPosition
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__CPP_StochasticFilter__
(in
rosetta.protocols.filters._protocols_filters_
)
__init__()
(in
BBExtraDataCAP
)
__instance_size__
(in
DnaPositionAP
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__CPP_StochasticFilterCreator__
(in
rosetta.protocols.filters._protocols_filters_
)
__init__()
(in
BackboneDB
)
__instance_size__
(in
DnaPositionCAP
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__CPP_StoreCombinedStoredTasksMover__
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
__init__()
(in
BackboneDBAP
)
__instance_size__
(in
PDBOutputAP
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__CPP_StoreCombinedStoredTasksMoverCreator__
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
__init__()
(in
BackboneDBCAP
)
__instance_size__
(in
PDBOutputCAP
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__CPP_StoreCompoundTaskMover__
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
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__init__()
(in
BackboneSegment
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__instance_size__
(in
PositionType
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__CPP_StoreCompoundTaskMoverCreator__
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
__init__()
(in
BackboneSegmentAP
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__instance_size__
(in
PositionTypeAP
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__CPP_StoreTaskMover__
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
__init__()
(in
BackboneSegmentCAP
)
__instance_size__
(in
PositionTypeCAP
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__CPP_StoreTaskMoverCreator__
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
__init__()
(in
EXCN_DB_IO_Failed
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__instance_size__
(in
ResTypeSequence_lt
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__CPP_StrandBundleFeatures__
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
__init__()
(in
EXCN_DB_IO_FailedAP
)
__instance_size__
(in
ResTypeSequence_ltAP
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__CPP_StrandBundleFeaturesCreator__
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
__init__()
(in
EXCN_DB_IO_FailedCAP
)
__instance_size__
(in
ResTypeSequence_ltCAP
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__CPP_StrandTwistingMover__
(in
rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
)
__init__()
(in
EXCN_Invalid_Hashmap
)
__instance_size__
(in
RestrictDesignToProteinDNAInterfaceAP
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__CPP_StringResourceStream__
(in
rosetta.basic.resource_manager.locator._basic_resource_manager_locator_
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__init__()
(in
EXCN_Invalid_HashmapAP
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__instance_size__
(in
RestrictDesignToProteinDNAInterfaceCAP
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__CPP_StrongWolfeLineMinimization__
(in
rosetta.core.optimization._core_optimization_
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__init__()
(in
EXCN_Invalid_HashmapCAP
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__instance_size__
(in
RestrictDesignToProteinDNAInterfaceCreatorAP
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__CPP_StructAvrgMover__
(in
rosetta.protocols.mpi_refinement._protocols_mpi_refinement_
)
__init__()
(in
EXCN_No_Extra_Data_To_Write
)
__instance_size__
(in
RestrictDesignToProteinDNAInterfaceCreatorCAP
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__CPP_StructPerturberCM__
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
__init__()
(in
EXCN_No_Extra_Data_To_WriteAP
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__instance_size__
(in
RotamerDNAHBondFilterAP
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__CPP_StructPerturberCMCreator__
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
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__init__()
(in
EXCN_No_Extra_Data_To_WriteCAP
)
__instance_size__
(in
RotamerDNAHBondFilterCAP
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__CPP_StructuralSimilarityEvaluator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
EXCN_Wrong_DB_Format
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__instance_size__
(in
SeparateDnaFromNonDnaAP
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__CPP_StructureFeatures__
(in
rosetta.protocols.features._protocols_features_
)
__init__()
(in
EXCN_Wrong_DB_FormatAP
)
__instance_size__
(in
SeparateDnaFromNonDnaCAP
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__CPP_StructureFeaturesCreator__
(in
rosetta.protocols.features._protocols_features_
)
__init__()
(in
EXCN_Wrong_DB_FormatCAP
)
__instance_size__
(in
SeparateDnaFromNonDnaCreatorAP
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__CPP_StructureRestrictor__
(in
rosetta.protocols.moves._protocols_moves_
)
__init__()
(in
EXCN_bbdb_Merge_Failed
)
__instance_size__
(in
SeparateDnaFromNonDnaCreatorCAP
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__CPP_StructureScoresFeatures__
(in
rosetta.protocols.features._protocols_features_
)
__init__()
(in
EXCN_bbdb_Merge_FailedAP
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__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_T
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__CPP_StructureScoresFeaturesCreator__
(in
rosetta.protocols.features._protocols_features_
)
__init__()
(in
EXCN_bbdb_Merge_FailedCAP
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
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__CPP_StructureSimilarityEvaluatorCreator__
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
__init__()
(in
FastGapMover
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__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
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__CPP_StubApplier__
(in
rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
)
__init__()
(in
FastGapMoverAP
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__instance_size__
(in
WatsonCrickRotamerCouplingsAP
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__CPP_StubDistanceScreener__
(in
rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
)
__init__()
(in
FastGapMoverCAP
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__instance_size__
(in
WatsonCrickRotamerCouplingsCAP
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__CPP_StubScoreFilter__
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
__init__()
(in
LeapIndex
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__instance_size__
(in
WatsonCrickRotamerCouplingsCreatorAP
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__CPP_StubScoreFilterCreator__
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
__init__()
(in
LeapIndexAP
)
__instance_size__
(in
WatsonCrickRotamerCouplingsCreatorCAP
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__CPP_StubScoreLoopsFilter__
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
__init__()
(in
LeapIndexCAP
)
__instance_size__
(in
ConformerSwitchMoverAP
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__CPP_StubScoreLoopsFilterCreator__
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
__init__()
(in
LegacyLeapIndex
)
__instance_size__
(in
ConformerSwitchMoverCAP
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__CPP_SubroutineMover__
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
__init__()
(in
LegacyLeapIndexAP
)
__instance_size__
(in
ConformerSwitchMoverCreatorAP
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__CPP_SubroutineMoverCreator__
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
__init__()
(in
LegacyLeapIndexCAP
)
__instance_size__
(in
ConformerSwitchMoverCreatorCAP
)
__CPP_SubtractExpression__
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
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__init__()
(in
LocalInserter
)
__instance_size__
(in
DockMCMCycleAP
)
__CPP_SuckerEnergy__
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
__init__()
(in
LocalInserterAP
)
__instance_size__
(in
DockMCMCycleCAP
)
__CPP_SuckerEnergyCreator__
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
__init__()
(in
LocalInserterCAP
)
__instance_size__
(in
DockMCMProtocolAP
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__CPP_SugarBackboneEnergy__
(in
rosetta.core.scoring.methods.carbohydrates._core_scoring_methods_carbohydrates_
)
__init__()
(in
LocalInserter_SimpleMin
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__instance_size__
(in
DockMCMProtocolCAP
)
__CPP_SugarBackboneEnergyCreator__
(in
rosetta.core.scoring.methods.carbohydrates._core_scoring_methods_carbohydrates_
)
__init__()
(in
LocalInserter_SimpleMinAP
)
__instance_size__
(in
DockMinMoverAP
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__CPP_SugarInstantiateMover__
(in
rosetta.protocols.stepwise.modeler.rna.sugar._protocols_stepwise_modeler_rna_sugar_
)
__init__()
(in
LocalInserter_SimpleMinCAP
)
__instance_size__
(in
DockMinMoverCAP
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__CPP_SugarInstantiator__
(in
rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
)
__init__()
(in
LoopHashDiversifier
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__instance_size__
(in
DockSetupMoverAP
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__CPP_SugarVirtualizeMover__
(in
rosetta.protocols.stepwise.modeler.rna.sugar._protocols_stepwise_modeler_rna_sugar_
)
__init__()
(in
LoopHashDiversifierAP
)
__instance_size__
(in
DockSetupMoverCAP
)
__CPP_SumFunc__
(in
rosetta.core.scoring.func._core_scoring_func_
)
__init__()
(in
LoopHashDiversifierCAP
)
__instance_size__
(in
DockSetupMoverCreatorAP
)
__CPP_SuperimposeMover__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
__init__()
(in
LoopHashDiversifierCreator
)
__instance_size__
(in
DockSetupMoverCreatorCAP
)
__CPP_SuperimposeMoverCreator__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
__init__()
(in
LoopHashDiversifierCreatorAP
)
__instance_size__
(in
DockTaskFactory
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__CPP_SurfaceDockingProtocol__
(in
rosetta.protocols.surface_docking._protocols_surface_docking_
)
__init__()
(in
LoopHashDiversifierCreatorCAP
)
__instance_size__
(in
DockTaskFactoryAP
)
__CPP_SurfaceEnergies__
(in
rosetta.core.scoring.solid_surface._core_scoring_solid_surface_
)
__init__()
(in
LoopHashLibrary
)
__instance_size__
(in
DockTaskFactoryCAP
)
__CPP_SurfaceEnergy__
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
__init__()
(in
LoopHashLibraryAP
)
__instance_size__
(in
DockingEnsemble
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__CPP_SurfaceEnergyCreator__
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
__init__()
(in
LoopHashLibraryCAP
)
__instance_size__
(in
DockingEnsembleAP
)
__CPP_SurfaceOrientMover__
(in
rosetta.protocols.surface_docking._protocols_surface_docking_
)
__init__()
(in
LoopHashLibraryLoader
)
__instance_size__
(in
DockingEnsembleCAP
)
__CPP_SurfaceSearchPattern__
(in
rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_
)
__init__()
(in
LoopHashLibraryLoaderAP
)
__instance_size__
(in
DockingEnsemblePrepackProtocolAP
)
__CPP_SurfaceVectorFallbackConfiguration__
(in
rosetta.protocols.surface_docking._protocols_surface_docking_
)
__init__()
(in
LoopHashLibraryLoaderCAP
)
__instance_size__
(in
DockingEnsemblePrepackProtocolCAP
)
__CPP_SurfaceVectorFallbackConfigurationCreator__
(in
rosetta.protocols.surface_docking._protocols_surface_docking_
)
__init__()
(in
LoopHashLibraryLoaderCreator
)
__instance_size__
(in
DockingHighResAP
)
__CPP_SurfaceVectorLoader__
(in
rosetta.protocols.surface_docking._protocols_surface_docking_
)
__init__()
(in
LoopHashLibraryLoaderCreatorAP
)
__instance_size__
(in
DockingHighResCAP
)
__CPP_SurfaceVectorLoaderCreator__
(in
rosetta.protocols.surface_docking._protocols_surface_docking_
)
__init__()
(in
LoopHashLibraryLoaderCreatorCAP
)
__instance_size__
(in
DockingHighResFilterAP
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__CPP_SurfaceVectorOptions__
(in
rosetta.protocols.surface_docking._protocols_surface_docking_
)
__init__()
(in
LoopHashLibraryOptions
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__instance_size__
(in
DockingHighResFilterCAP
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__CPP_SurfaceVectorOptionsCreator__
(in
rosetta.protocols.surface_docking._protocols_surface_docking_
)
__init__()
(in
LoopHashLibraryOptionsAP
)
__instance_size__
(in
DockingHighResLegacyAP
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__CPP_SurfEnergy__
(in
rosetta.core.scoring.packing._core_scoring_packing_
)
__init__()
(in
LoopHashLibraryOptionsCAP
)
__instance_size__
(in
DockingHighResLegacyCAP
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__CPP_SurfEnergyCreator__
(in
rosetta.core.scoring.packing._core_scoring_packing_
)
__init__()
(in
LoopHashLibraryOptionsCreator
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__instance_size__
(in
DockingInitialPerturbationAP
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__CPP_SurfVolEnergy__
(in
rosetta.core.scoring.packing._core_scoring_packing_
)
__init__()
(in
LoopHashLibraryOptionsCreatorAP
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__instance_size__
(in
DockingInitialPerturbationCAP
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__CPP_SurfVolEnergyCreator__
(in
rosetta.core.scoring.packing._core_scoring_packing_
)
__init__()
(in
LoopHashLibraryOptionsCreatorCAP
)
__instance_size__
(in
DockingInitialPerturbationCreatorAP
)
__CPP_SurrogateVariableExpression__
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
__init__()
(in
LoopHashMap
)
__instance_size__
(in
DockingInitialPerturbationCreatorCAP
)
__CPP_SWAligner__
(in
rosetta.core.sequence._core_sequence_
)
__init__()
(in
LoopHashMapAP
)
__instance_size__
(in
DockingLowResAP
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__CPP_SwapSegment__
(in
rosetta.protocols.seeded_abinitio._protocols_seeded_abinitio_
)
__init__()
(in
LoopHashMapCAP
)
__instance_size__
(in
DockingLowResCAP
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__CPP_SwapSegmentCreator__
(in
rosetta.protocols.seeded_abinitio._protocols_seeded_abinitio_
)
__init__()
(in
LoopHashMoverWrapper
)
__instance_size__
(in
DockingLowResEnsembleAP
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__CPP_SwitchChainOrderMover__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
__init__()
(in
LoopHashMoverWrapperAP
)
__instance_size__
(in
DockingLowResEnsembleCAP
)
__CPP_SwitchChainOrderMoverCreator__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
__init__()
(in
LoopHashMoverWrapperCAP
)
__instance_size__
(in
DockingLowResFilterAP
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__CPP_SwitchResidueTypeSetMover__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
__init__()
(in
LoopHashMoverWrapperCreator
)
__instance_size__
(in
DockingLowResFilterCAP
)
__CPP_SwitchResidueTypeSetMoverCreator__
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
__init__()
(in
LoopHashMoverWrapperCreatorAP
)
__instance_size__
(in
DockingPrepackProtocolAP
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__CPP_SymAtomTreeMinimizer__
(in
rosetta.core.optimization.symmetry._core_optimization_symmetry_
)
__init__()
(in
LoopHashMoverWrapperCreatorCAP
)
__instance_size__
(in
DockingPrepackProtocolCAP
)
__CPP_SymAtomTreeMultifunc__
(in
rosetta.core.optimization.symmetry._core_optimization_symmetry_
)
__init__()
(in
LoopHashRelaxProtocol
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__instance_size__
(in
DockingProtocolAP
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__CPP_SymDockBaseProtocol__
(in
rosetta.protocols.symmetric_docking._protocols_symmetric_docking_
)
__init__()
(in
LoopHashRelaxProtocolAP
)
__instance_size__
(in
DockingProtocolCAP
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__CPP_SymDockingHiRes__
(in
rosetta.protocols.symmetric_docking._protocols_symmetric_docking_
)
__init__()
(in
LoopHashRelaxProtocolCAP
)
__instance_size__
(in
DockingProtocolCreatorAP
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__CPP_SymDockingInitialPerturbation__
(in
rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
)
__init__()
(in
LoopHashSampler
)
__instance_size__
(in
DockingProtocolCreatorCAP
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__CPP_SymDockingLowRes__
(in
rosetta.protocols.symmetric_docking._protocols_symmetric_docking_
)
__init__()
(in
LoopHashSamplerAP
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__instance_size__
(in
DockingSlideIntoContactAP
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__CPP_SymDockingSlideIntoContact__
(in
rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
)
__init__()
(in
LoopHashSamplerCAP
)
__instance_size__
(in
DockingSlideIntoContactCAP
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__CPP_SymDockProtocol__
(in
rosetta.protocols.symmetric_docking._protocols_symmetric_docking_
)
__init__()
(in
MPI_LoopHashRefineAP
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__instance_size__
(in
EllipsoidalRandomizationMoverAP
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__CPP_SymDockProtocolCreator__
(in
rosetta.protocols.symmetric_docking._protocols_symmetric_docking_
)
__init__()
(in
MPI_LoopHashRefineCAP
)
__instance_size__
(in
EllipsoidalRandomizationMoverCAP
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__CPP_SymDofMover__
(in
rosetta.protocols.matdes._protocols_matdes_
)
__init__()
(in
MPI_LoopHashRefine_Emperor
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__instance_size__
(in
FaDockingSlideIntoContactAP
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__CPP_SymDofMoverCreator__
(in
rosetta.protocols.matdes._protocols_matdes_
)
__init__()
(in
MPI_LoopHashRefine_EmperorAP
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__instance_size__
(in
FaDockingSlideIntoContactCAP
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__CPP_symECreator__
(in
rosetta.core.scoring.sym_e._core_scoring_sym_e_
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__init__()
(in
MPI_LoopHashRefine_EmperorCAP
)
__instance_size__
(in
InterfaceSidechainMinMoverAP
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__CPP_symEnergy__
(in
rosetta.core.scoring.sym_e._core_scoring_sym_e_
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__init__()
(in
MPI_LoopHashRefine_Master
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__instance_size__
(in
InterfaceSidechainMinMoverCAP
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__CPP_SymEnergyCutRotamerTrialsMover__
(in
rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
)
__init__()
(in
MPI_LoopHashRefine_MasterAP
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__instance_size__
(in
RigidBodyInfo
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__CPP_SymFoldandDockMoveRbJumpMover__
(in
rosetta.protocols.symmetric_docking._protocols_symmetric_docking_
)
__init__()
(in
MPI_LoopHashRefine_MasterCAP
)
__instance_size__
(in
RigidBodyInfoAP
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__CPP_SymFoldandDockMoveRbJumpMoverCreator__
(in
rosetta.protocols.symmetric_docking._protocols_symmetric_docking_
)
__init__()
(in
Mover_LoopHashRefine
)
__instance_size__
(in
RigidBodyInfoCAP
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__CPP_SymFoldandDockRbTrialMover__
(in
rosetta.protocols.symmetric_docking._protocols_symmetric_docking_
)
__init__()
(in
Mover_LoopHashRefineAP
)
__instance_size__
(in
SidechainMinMoverAP
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__CPP_SymFoldandDockRbTrialMoverCreator__
(in
rosetta.protocols.symmetric_docking._protocols_symmetric_docking_
)
__init__()
(in
Mover_LoopHashRefineCAP
)
__instance_size__
(in
SidechainMinMoverCAP
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__CPP_SymFoldandDockSlideTrialMover__
(in
rosetta.protocols.symmetric_docking._protocols_symmetric_docking_
)
__init__()
(in
WorkUnit_LoopHash
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_T
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__CPP_SymFoldandDockSlideTrialMoverCreator__
(in
rosetta.protocols.symmetric_docking._protocols_symmetric_docking_
)
__init__()
(in
WorkUnit_LoopHashAP
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
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__CPP_SymInterfaceSidechainMinMover__
(in
rosetta.protocols.symmetric_docking._protocols_symmetric_docking_
)
__init__()
(in
WorkUnit_LoopHashCAP
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
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__CPP_SymmDataLoader__
(in
rosetta.core.conformation.symmetry._core_conformation_symmetry_
)
__init__()
(in
__CPP_FastGapMover__
)
__instance_size__
(in
TemperedDockingAP
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__CPP_SymmDataLoaderCreator__
(in
rosetta.core.conformation.symmetry._core_conformation_symmetry_
)
__init__()
(in
__CPP_LocalInserter_SimpleMin__
)
__instance_size__
(in
TemperedDockingCAP
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TemperedDockingCreatorCAP
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MPDockingMoverAP
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rosetta.protocols.membrane.symmetry._protocols_membrane_symmetry_
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MPDockingMoverCAP
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rosetta.core.conformation.symmetry._core_conformation_symmetry_
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MPDockingMoverCreatorAP
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rosetta.core.scoring.symmetry._core_scoring_symmetry_
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MPDockingMoverCreatorCAP
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rosetta.core.scoring.methods._core_scoring_methods_
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MPDockingSetupMoverAP
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rosetta.core.scoring.methods._core_scoring_methods_
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MPDockingSetupMoverCAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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MPDockingSetupMoverCreatorCAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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rosetta.core.scoring.symmetry._core_scoring_symmetry_
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EXCN_Loop_not_closed
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SaneDockingProtocolAP
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EXCN_Loop_not_closedAP
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SaneDockingProtocolCAP
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rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
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EXCN_Loop_not_closedCAP
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rosetta.core.optimization.symmetry._core_optimization_symmetry_
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FoldTreeFromLoops
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rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
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FoldTreeFromLoopsAP
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AssembleLinkerMoverAP
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rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
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FoldTreeFromLoopsCAP
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AssembleLinkerMoverCAP
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rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
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FoldTreeFromLoopsCreator
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CombineChainsMoverAP
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rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
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FoldTreeFromLoopsCreatorAP
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CombineChainsMoverCAP
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rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
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FoldTreeFromLoopsCreatorCAP
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PostDockAssemblyScorerAP
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rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
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PostDockAssemblyScorerCAP
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rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
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BfactorFittingMoverAP
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rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
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GuardedLoopsFromFileCAP
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BfactorFittingMoverCAP
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rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
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JSONFormattedLoopsFileReader
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BfactorFittingMoverCreatorAP
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rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
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JSONFormattedLoopsFileReaderAP
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BfactorFittingMoverCreatorCAP
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rosetta.protocols.symmetric_docking._protocols_symmetric_docking_
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JSONFormattedLoopsFileReaderCAP
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BfactorMultifunc
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rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
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Loop
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BfactorMultifuncAP
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rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
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LoopAP
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BfactorMultifuncCAP
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rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
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LoopCAP
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DensityMorphingMoverAP
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rosetta.protocols.symmetric_docking._protocols_symmetric_docking_
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LoopFromFileData
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DensityMorphingMoverCAP
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rosetta.protocols.matdes._protocols_matdes_
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LoopFromFileDataAP
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DensityMorphingMoverCreatorAP
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rosetta.protocols.matdes._protocols_matdes_
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LoopFromFileDataCAP
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DensityMorphingMoverCreatorCAP
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rosetta.core.scoring.etable._core_scoring_etable_
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LoopMoverFactory
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ReportFSCAP
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rosetta.core.scoring.etable._core_scoring_etable_
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LoopMoverFactoryAP
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ReportFSCCAP
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LoopMoverFactoryCAP
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ReportFSCCreatorAP
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Loop_lt
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ReportFSCCreatorCAP
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rosetta.protocols.cryst._protocols_cryst_
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Loop_ltAP
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Loop_ltCAP
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Loops
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LoopsAP
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LoopsCAP
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SetupForDensityScoringMoverAP
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LoopsFileData
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rosetta.protocols.simple_moves._protocols_simple_moves_
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LoopsFileDataAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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LoopsFileDataCAP
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SetupForDensityScoringMoverCreatorCAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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LoopsFileFallbackConfiguration
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AutoCutDataAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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LoopsFileFallbackConfigurationAP
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AutoCutDataCAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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LoopsFileFallbackConfigurationCAP
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AutoCutDataCreatorAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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LoopsFileFallbackConfigurationCreator
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AutoCutDataCreatorCAP
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rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
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LoopsFileFallbackConfigurationCreatorAP
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ClientMoverAP
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rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
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LoopsFileFallbackConfigurationCreatorCAP
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ClientMoverCAP
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rosetta.core.pack.task._core_pack_task_
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LoopsFileIO
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CoMTrackerCMAP
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rosetta.core.pack.task.operation._core_pack_task_operation_
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LoopsFileIOAP
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CoMTrackerCMCAP
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LoopsFileIOCAP
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CoMTrackerCMCreatorAP
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rosetta.protocols.features._protocols_features_
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LoopsFileLoader
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CoMTrackerCMCreatorCAP
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rosetta.protocols.features._protocols_features_
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LoopsFileLoaderAP
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DofUnlock
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rosetta.protocols.jd2.parser._protocols_jd2_parser_
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LoopsFileLoaderCAP
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DofUnlockAP
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LoopsFileLoaderCreator
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DofUnlockCAP
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rosetta.protocols.match._protocols_match_
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LoopsFileLoaderCreatorAP
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EXCN_Env_PassportAP
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rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
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LoopsFileLoaderCreatorCAP
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EXCN_Env_PassportCAP
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rosetta.protocols.docking._protocols_docking_
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LoopsFileOptions
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EXCN_Env_Security_ExceptionAP
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LoopsFileOptionsAP
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EXCN_Env_Security_ExceptionCAP
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LoopsFileOptionsCAP
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EnvClaimBroker
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LoopsFileOptionsCreator
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EnvClaimBrokerAP
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LoopsFileOptionsCreatorAP
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LoopsFileOptionsCreatorCAP
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EnvMoverAP
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PoseNumberedLoopFileReader
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CCDLoopClosureMover
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CCDLoopClosureMoverAP
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EnvClaim
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rosetta.protocols.topology_broker._protocols_topology_broker_'
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CCDLoopClosureMoverCAP
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EnvClaimAP
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rosetta.core.scoring.func._core_scoring_func_
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CCDLoopClosureMoverCreator
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EnvClaimCAP
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rosetta.protocols.features._protocols_features_
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CCDLoopClosureMoverCreatorAP
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EnvLabelSelectorAP
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rosetta.protocols.features._protocols_features_
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CCDLoopClosureMoverCreatorCAP
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EnvLabelSelectorCAP
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rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
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FASelectSlidingWindowLoopClosure
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JumpClaimAP
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rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
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FASelectSlidingWindowLoopClosureAP
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JumpClaimCAP
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rosetta.protocols.environment.claims._protocols_environment_claims_
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FASelectSlidingWindowLoopClosureCAP
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JumpElement
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rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
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LoopClosure
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JumpElementAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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LoopClosureAP
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JumpElementCAP
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rosetta.protocols.comparative_modeling.features._protocols_comparative_modeling_features_
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LoopClosureCAP
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ResidueElement
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rosetta.protocols.frags._protocols_frags_
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RamaCheck1B
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ResidueElementAP
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rosetta.protocols.normalmode._protocols_normalmode_
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RamaCheck1BAP
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ResidueElementCAP
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rosetta.protocols.loops.loop_closure.kinematic_closure._protocols_loops_loop_closure_kinematic_closure_
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RamaCheck1BCAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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RamaCheck2B
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rosetta.protocols.simple_moves._protocols_simple_moves_
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RamaCheck2BAP
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RamaCheck2BCAP
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TorsionClaimAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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RamaCheckBase
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TorsionClaimCAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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RamaCheckBaseAP
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VirtResClaimAP
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rosetta.protocols.features._protocols_features_
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RamaCheckBaseCAP
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VirtResClaimCAP
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rosetta.protocols.features._protocols_features_
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ShortLoopClosure
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XYZClaimAP
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rosetta.protocols.features._protocols_features_
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ShortLoopClosureAP
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XYZClaimCAP
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rosetta.protocols.features._protocols_features_
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ShortLoopClosureCAP
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EnzdesBaseProtocolAP
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rosetta.protocols.features._protocols_features_
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SlidingWindowLoopClosure
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EnzdesBaseProtocolCAP
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rosetta.protocols.features._protocols_features_
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SlidingWindowLoopClosureAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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rosetta.protocols.ligand_docking._protocols_ligand_docking_
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SlidingWindowLoopClosureCAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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rosetta.protocols.ligand_docking._protocols_ligand_docking_
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WidthFirstSlidingWindowLoopClosure
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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rosetta.protocols.membrane._protocols_membrane_
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WidthFirstSlidingWindowLoopClosureAP
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AlignEvaluatorAP
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rosetta.protocols.membrane._protocols_membrane_
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WidthFirstSlidingWindowLoopClosureCAP
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AlignEvaluatorCAP
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rosetta.protocols.ligand_docking._protocols_ligand_docking_
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__CPP_CCDLoopClosureMoverCreator__
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rosetta.protocols.ligand_docking._protocols_ligand_docking_
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__CPP_CCDLoopClosureMover__
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EvaluatorCreatorAP
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rosetta.protocols.membrane._protocols_membrane_
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__CPP_FASelectSlidingWindowLoopClosure__
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EvaluatorCreatorCAP
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rosetta.protocols.membrane._protocols_membrane_
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__CPP_LoopClosure__
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EvaluatorFactoryAP
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rosetta.protocols.membrane._protocols_membrane_
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__CPP_RamaCheck1B__
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EvaluatorFactoryCAP
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rosetta.protocols.membrane._protocols_membrane_
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__CPP_RamaCheck2B__
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MetaPoseEvaluatorAP
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rosetta.protocols.moves._protocols_moves_
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__CPP_RamaCheckBase__
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MetaPoseEvaluatorCAP
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rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
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__CPP_ShortLoopClosure__
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PCA
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rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
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__CPP_SlidingWindowLoopClosure__
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PCAAP
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rosetta.protocols.moves._protocols_moves_
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PCACAP
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rosetta.core.scoring.trie._core_scoring_trie_
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BaseTabooPerturber
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PoseEvaluator
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rosetta.core.scoring.etable.etrie._core_scoring_etable_etrie_
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BaseTabooPerturberAP
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BaseTabooPerturberCAP
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KinematicMover
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rosetta.core.scoring.trie._core_scoring_trie_
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KinematicMoverAP
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rosetta.core.scoring.etable.etrie._core_scoring_etable_etrie_
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KinematicMoverCAP
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rosetta.core.scoring.etable.etrie._core_scoring_etable_etrie_
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KinematicPerturber
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SingleValuePoseEvaluator_SizeCAP
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rosetta.protocols.sic_dock.scores._protocols_sic_dock_scores_
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KinematicPerturberAP
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SingleValuePoseEvaluator_T_double_TAP
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rosetta.protocols.filters._protocols_filters_
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KinematicPerturberCAP
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SingleValuePoseEvaluator_T_double_TCAP
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rosetta.protocols.filters._protocols_filters_
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KinematicWrapper
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SingleValuePoseEvaluator_T_long_int_TAP
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rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
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KinematicWrapperAP
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SingleValuePoseEvaluator_T_long_int_TCAP
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rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
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KinematicWrapperCAP
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SingleValuePoseEvaluator_T_long_unsigned_int_TAP
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rosetta.protocols.simple_filters._protocols_simple_filters_
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NeighborDependentTabooSamplingKinematicPerturber
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SingleValuePoseEvaluator_T_long_unsigned_int_TCAP
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rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
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NeighborDependentTabooSamplingKinematicPerturberAP
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SingletonBase_T_protocols_evaluation_EvaluatorFactory_T
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SingletonBase_T_protocols_evaluation_EvaluatorFactory_TAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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SingletonBase_T_protocols_evaluation_EvaluatorFactory_TCAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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NeighborDependentTorsionSamplingKinematicPerturberAP
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rosetta.core.scoring._core_scoring_
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NeighborDependentTorsionSamplingKinematicPerturberCAP
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TimeEvaluatorCAP
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rosetta.core.scoring._core_scoring_
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TabooSamplingKinematicPerturber
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BasePairStep
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rosetta.core.scoring.methods._core_scoring_methods_
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TabooSamplingKinematicPerturberAP
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rosetta.numeric.expression_parser._numeric_expression_parser_
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TabooSamplingKinematicPerturberCAP
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BasePairStepCAP
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rosetta.core.pack.rotamer_set._core_pack_rotamer_set_
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TorsionRestrictedKinematicPerturber
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BasePairStepLibrary
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rosetta.protocols.ligand_docking._protocols_ligand_docking_
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TorsionRestrictedKinematicPerturberAP
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BasePairStepLibraryAP
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rosetta.core.scoring.methods._core_scoring_methods_
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TorsionRestrictedKinematicPerturberCAP
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BasePairStepLibraryCAP
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rosetta.protocols.unfolded_state_energy_calculator._protocols_unfolded_state_energy_calculator_
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TorsionSamplingKinematicPerturber
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BasePairStepSequence
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rosetta.core.scoring.methods._core_scoring_methods_
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TorsionSamplingKinematicPerturberAP
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BasePairStepSequenceAP
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rosetta.numeric.random._numeric_random_
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TorsionSamplingKinematicPerturberCAP
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BasePairStepSequenceCAP
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rosetta.protocols.kinematic_closure.perturbers._protocols_kinematic_closure_perturbers_
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TorsionSweepingKinematicPerturber
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rosetta.protocols.rigid._protocols_rigid_
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BasePairTypeAP
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BasePairTypeCAP
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rosetta.protocols.rigid._protocols_rigid_
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VicinitySamplingKinematicPerturber
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ChunkSet
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rosetta.protocols.rigid._protocols_rigid_
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VicinitySamplingKinematicPerturberAP
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rosetta.protocols.simple_moves._protocols_simple_moves_
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VicinitySamplingKinematicPerturberCAP
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ChunkSetCAP
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rosetta.protocols.rigid._protocols_rigid_
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FragmentLibrary
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__CPP_KinematicWrapper__
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FragmentLibraryCAP
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__CPP_TorsionSamplingKinematicPerturber__
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RNA_ChunkLibraryCAP
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LoopCM
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RNA_DeNovoProtocolAP
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LoopCMAP
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RNA_FragmentMoverCAP
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rosetta.numeric.expression_parser._numeric_expression_parser_
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rosetta.protocols.pack_daemon._protocols_pack_daemon_
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LoopMover_Perturb_CCDCreatorCAP
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LoopMover_Perturb_KICCreator
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LoopMover_Perturb_KICCreatorAP
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LoopsDatabaseDefinerCreator
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LoopsDefinerCAP
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LoopsDefinerCreator
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LoopsDefinerCreatorCAP
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LoopsDefinerFactoryAP
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LoopsDefinerLoaderAP
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LoopsDefinerLoaderCAP
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LoopsDefinerLoaderCreator
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xyzTriple_double
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LoopsDefinerLoaderCreatorAP
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LoopsDefinerLoaderCreatorCAP
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LoopsExplicitDefinerCAP
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LoopsExplicitDefinerCreatorCAP
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LoopsFileDefiner
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LoopsFileDefinerAP
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LoopsFileDefinerCAP
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LoopsFileDefinerCreator
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LoopsFileDefinerCreatorAP
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LoopsFileDefinerCreatorCAP
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SingletonBase_T_protocols_loops_loops_definers_LoopsDefinerFactory_T
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ProteinBondGeometryFeaturesCreatorCAP
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xyzTriple_Real
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SingletonBase_T_protocols_loops_loops_definers_LoopsDefinerFactory_TAP
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ProteinRMSDFeaturesAP
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xyzTriple_SSize
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SingletonBase_T_protocols_loops_loops_definers_LoopsDefinerFactory_TCAP
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ProteinRMSDFeaturesCAP
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xyzTriple_Size
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ProteinRMSDFeaturesCreatorAP
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ProteinRMSDFeaturesCreatorCAP
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xyzVector_double
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xyzVector_float
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ProteinResidueConformationFeaturesCAP
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rosetta.core.fragment
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ProteinResidueConformationFeaturesCreatorAP
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ProteinResidueConformationFeaturesCreatorCAP
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ProteinSilentReportAP
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xyzMatrix_Real
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ProteinSilentReportCAP
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CentroidRotNumCAP
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ProtocolFeatures
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xyzMatrix_Size
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MakeRotLibJob
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xyzMatrix_double
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MakeRotLibJobAP
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ProtocolFeaturesCAP
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MakeRotLibJobCAP
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RadiusOfGyrationFeaturesAP
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xyzTriple_Real
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MakeRotLibJobInputter
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MakeRotLibJobInputterAP
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MakeRotLibJobInputterCAP
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MakeRotLibJobInputterCreator
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MakeRotLibJobInputterCreatorAP
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ReportAP
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MakeRotLibJobInputterCreatorCAP
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ReportCAP
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MakeRotLibMover
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ReportToDBAP
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MakeRotLibMoverAP
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ReportToDBCAP
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xyzVector_double
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MakeRotLibMoverCAP
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ReportToDBCreatorAP
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xyzVector_float
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MakeRotLibOptionsData
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ReportToDBCreatorCAP
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DataMap
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MakeRotLibOptionsDataAP
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ResidueBurialFeaturesAP
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WriteableCacheableMap
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MakeRotLibOptionsDataCAP
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ResidueBurialFeaturesCAP
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map_Real_Real
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RotData
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map_Real_string
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RotDataAP
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ResidueBurialFeaturesCreatorCAP
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map_SSize_SSize
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RotDataCAP
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ResidueConformationFeaturesAP
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map_SSize_string
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TorsionRange
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ResidueConformationFeaturesCAP
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map_Size_Real
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TorsionRangeAP
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ResidueConformationFeaturesCreatorAP
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map_Size_Size
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TorsionRangeCAP
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ResidueConformationFeaturesCreatorCAP
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map_Size_SymDof
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__CPP_MakeRotLibJobInputterCreator__
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map_Size_string
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__CPP_MakeRotLibJobInputter__
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ResidueFeaturesCAP
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AddAllPositionsMPM
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ResidueFeaturesCreatorCAP
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AddAllPositionsMPMAP
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map_string_Real
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AddAllPositionsMPMCAP
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BfactorMPM
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ResidueGridScoresFeaturesCreatorAP
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map_string_Size
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BfactorMPMAP
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ResidueGridScoresFeaturesCreatorCAP
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BfactorMPMCAP
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Bool3DGrid
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ResidueScoresFeaturesCAP
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vector1_AtomID
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Bool3DGridAP
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ResidueScoresFeaturesCreatorAP
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vector1_Pose
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Bool3DGridCAP
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ResidueScoresFeaturesCreatorCAP
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vector1_PoseOP
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Bool3DGridKinemageWriter
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ResidueSecondaryStructureFeaturesAP
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vector1_ScoreType
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Bool3DGridKinemageWriterAP
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Hit
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HitAP
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HitCAP
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HitHasher
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HitHasherAP
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HitNeighborFinder
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RotamerBoltzmannWeightFeaturesAP
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HitNeighborFinderAP
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MatchCounterAP
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RotamerFeaturesAP
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MatchCounterCAP
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vector1_xyzVector_uint
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MatcherOutputStats
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MatcherTask
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MatcherTaskCAP
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Selector_UPPER_POSITION
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NumNeighborsMPMAP
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GasteigerAtomTypeSet
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vector1_FragData
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xyzVector_Real
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LimitHitsPerRotamerFilter
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FilterCollectionCAP
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xyzVector_SSize
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LimitHitsPerRotamerFilterAP
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FilterCreator
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xyzVector_Size
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LimitHitsPerRotamerFilterCAP
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FilterCreatorAP
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xyzVector_double
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MatchCollisionFilter
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FilterCreatorCAP
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xyzVector_float
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MatchCollisionFilterAP
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FilterFactoryAP
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xyzMatrix_Real
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MatchCollisionFilterCAP
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FilterFactoryCAP
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xyzMatrix_SSize
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MatchConsolidator
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IfThenFilterAP
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xyzMatrix_Size
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MatchConsolidatorAP
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IfThenFilterCAP
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xyzMatrix_double
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MatchConsolidatorCAP
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IfThenFilterCreatorAP
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xyzMatrix_float
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MatchEvaluator
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IfThenFilterCreatorCAP
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xyzTriple_Real
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MatchEvaluatorAP
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MoveBeforeFilterAP
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xyzTriple_SSize
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MatchEvaluatorCAP
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MoveBeforeFilterCAP
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xyzTriple_Size
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MatchFilter
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MoveBeforeFilterCreatorAP
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xyzTriple_double
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MatchFilterAP
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MoveBeforeFilterCreatorCAP
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xyzTriple_float
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MatchFilterCAP
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ReplicateFilterAP
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xyzVector_Real
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MatchGrouper
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ReplicateFilterCAP
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xyzVector_SSize
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MatchGrouperAP
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ReplicateFilterCreatorAP
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xyzVector_Size
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MatchGrouperCAP
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ReplicateFilterCreatorCAP
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xyzVector_double
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MatchOutputter
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StochasticFilterAP
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xyzVector_float
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MatchOutputterAP
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StochasticFilterCAP
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CD
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MatchOutputterCAP
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StochasticFilterCreatorAP
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EnergyMethod
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MatchProcessor
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StochasticFilterCreatorCAP
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PyJobDistributor
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MatchProcessorAP
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TimeFilterAP
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PyMOLMover
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MatchProcessorCAP
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TimeFilterCAP
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PyMOLObserver
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MatchScoreWriter
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TimeFilterCreatorAP
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PySocketClient
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MatchScoreWriterAP
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TimeFilterCreatorCAP
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PythonPyExitCallback
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MatchScoreWriterCAP
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TrueFilterAP
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ComparingTracer
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OutputWriter
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TrueFilterCAP
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ComparingTracerAP
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OutputWriterAP
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TrueFilterCreatorAP
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ComparingTracerCAP
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OutputWriterCAP
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TrueFilterCreatorCAP
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DynamicProfileThis
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PDBWriter
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BluePrintBDRAP
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DynamicProfileThisAP
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PDBWriterAP
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BluePrintBDRCAP
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DynamicProfileThisCAP
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PDBWriterCAP
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BluePrintBDRCreatorAP
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Emitter
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PoseInserter
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BluePrintBDRCreatorCAP
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EmitterAP
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PoseInserterAP
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CircularPermutationAP
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EmitterCAP
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PoseInserterCAP
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CircularPermutationCAP
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JsonEmitter
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PoseMatchOutputWriter
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CircularPermutationCreatorAP
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JsonEmitterAP
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PoseMatchOutputWriterAP
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JsonEmitterCAP
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PoseMatchOutputWriterCAP
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MatchResidues
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MemTracer
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ProcessorFactory
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MatchResiduesAP
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MemTracerAP
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ProcessorFactoryAP
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MatchResiduesCAP
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MemTracerCAP
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ProcessorFactoryCAP
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MatchResiduesMoverAP
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MetricValueBase
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ResidueKinemageWriter
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MatchResiduesMoverCAP
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MetricValueBaseAP
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ResidueKinemageWriterAP
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MatchResiduesMoverCreatorAP
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MetricValueBaseCAP
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ResidueKinemageWriterCAP
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MatchResiduesMoverCreatorCAP
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ProfileThis
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SameChiBinComboGrouper
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NcontactsCalculator
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ProfileThisAP
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SameChiBinComboGrouperAP
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NcontactsCalculatorAP
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ProfileThisCAP
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SameChiBinComboGrouperCAP
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NcontactsCalculatorCAP
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PyTracer
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SameRotamerComboGrouper
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SheetConstraintsRCGAP
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PyTracerAP
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SameRotamerComboGrouperAP
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SheetConstraintsRCGCAP
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PyTracerCAP
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SameRotamerComboGrouperCAP
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SheetCstGeneratorCreatorAP
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Tracer
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SameSequenceAndDSPositionGrouper
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SheetCstGeneratorCreatorCAP
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TracerAP
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TracerCAP
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SameSequenceAndDSPositionGrouperCAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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TracerManager
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TracerManagerAP
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SameSequenceGrouperAP
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TracerManagerCAP
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SameSequenceGrouperCAP
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CoreDunbrackFilterCAP
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TracerOptions
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SingleDownstreamResidueWriter
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TracerOptionsAP
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SingleDownstreamResidueWriterAP
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TracerOptionsCAP
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SingleDownstreamResidueWriterCAP
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FragQualFilterAP
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TracerToFile
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SingletonBase_T_core_chemical_ChemicalManager_T
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FragQualFilterCAP
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TracerToFileAP
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FragQualFilterCreatorAP
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TracerToFileCAP
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FragQualFilterCreatorCAP
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YamlEmitter
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StateAccumulatingMatchFilter
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HSSTripletFilterAP
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YamlEmitterAP
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StateAccumulatingMatchFilterAP
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HSSTripletFilterCAP
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YamlEmitterCAP
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StateAccumulatingMatchFilterCAP
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HSSTripletFilterCreatorAP
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UpstreamCollisionFilter
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HSSTripletFilterCreatorCAP
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UpstreamCollisionFilterAP
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HelixKinkFilterAP
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basic_otstream_T_char_std_char_traits_T_char_T__T
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UpstreamCollisionFilterCAP
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HelixKinkFilterCAP
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UpstreamDownstreamCollisionFilter
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HelixKinkFilterCreatorAP
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basic_otstream_T_char_std_char_traits_T_char_T__TCAP
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HelixKinkFilterCreatorCAP
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DatabaseSessionLoader
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HelixPairingFilterAP
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DatabaseSessionLoaderAP
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UpstreamHitCacher
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HelixPairingFilterCAP
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DatabaseSessionLoaderCAP
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UpstreamHitCacherAP
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HelixPairingFilterCreatorAP
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DatabaseSessionLoaderCreator
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HelixPairingFilterCreatorCAP
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DatabaseSessionLoaderCreatorAP
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WriteKinemageOutputter
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InterlockingAromaFilterAP
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DatabaseSessionLoaderCreatorCAP
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WriteKinemageOutputterAP
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InterlockingAromaFilterCAP
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DatabaseSessionOptions
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WriteKinemageOutputterCAP
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InterlockingAromaFilterCreatorAP
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DatabaseSessionOptionsAP
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WriteUpstreamCoordinateKinemage
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InterlockingAromaFilterCreatorCAP
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DatabaseSessionOptionsCAP
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WriteUpstreamCoordinateKinemageAP
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NcontactsFilterAP
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DatabaseSessionOptionsCreator
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WriteUpstreamCoordinateKinemageCAP
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NcontactsFilterCAP
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DatabaseSessionOptionsCreatorAP
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WriteUpstreamHitKinemage
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NcontactsFilterCreatorAP
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DatabaseSessionOptionsCreatorCAP
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WriteUpstreamHitKinemageAP
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NcontactsFilterCreatorCAP
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WriteUpstreamHitKinemageCAP
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ParallelBetaPairingPreferenceFilterAP
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__CPP_DatabaseSessionLoader__
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__CPP_CloudPDBWriter__
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ParallelBetaPairingPreferenceFilterCAP
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ParallelBetaPairingPreferenceFilterCreatorAP
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ParallelBetaPairingPreferenceFilterCreatorCAP
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InsertGenerator
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__CPP_LimitHitsPerRotamerFilter__
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SecondaryStructureCountFilterAP
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InsertGeneratorAP
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SecondaryStructureCountFilterCAP
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InsertGeneratorCAP
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SecondaryStructureCountFilterCreatorAP
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RowDataBase
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SecondaryStructureCountFilterCreatorCAP
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SecondaryStructureFilterAP
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SecondaryStructureFilterCAP
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SecondaryStructureFilterCreatorAP
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SecondaryStructureFilterCreatorCAP
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SecondaryStructureHasResidueFilterAP
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DbBigInt
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ProteinSCSamplerAP
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__instance_size__
(in
NatbiasStrandPairPotential
)
__init__()
(in
GreaterThanConstraintCAP
)
__init__()
(in
ProteinSCSamplerCAP
)
__instance_size__
(in
NatbiasStrandPairPotentialAP
)
__init__()
(in
Index
)
__init__()
(in
ProteinUpstreamBuilder
)
__instance_size__
(in
NatbiasStrandPairPotentialCAP
)
__init__()
(in
IndexAP
)
__init__()
(in
ProteinUpstreamBuilderAP
)
__instance_size__
(in
SSPairPotential
)
__init__()
(in
IndexCAP
)
__init__()
(in
ProteinUpstreamBuilderCAP
)
__instance_size__
(in
SSPairPotentialAP
)
__init__()
(in
PrimaryKey
)
__init__()
(in
SampleStrategyData
)
__instance_size__
(in
SSPairPotentialCAP
)
__init__()
(in
PrimaryKeyAP
)
__init__()
(in
SampleStrategyDataAP
)
__instance_size__
(in
BB_Pos
)
__init__()
(in
PrimaryKeyCAP
)
__init__()
(in
SampleStrategyDataCAP
)
__instance_size__
(in
BB_PosAP
)
__init__()
(in
Schema
)
__init__()
(in
ScaffoldBuildPoint
)
__instance_size__
(in
BB_PosCAP
)
__init__()
(in
SchemaAP
)
__init__()
(in
ScaffoldBuildPointAP
)
__instance_size__
(in
BetaAlphaBetaMotif
)
__init__()
(in
SchemaCAP
)
__init__()
(in
ScaffoldBuildPointCAP
)
__instance_size__
(in
BetaAlphaBetaMotifAP
)
__init__()
(in
UniqueConstraint
)
__init__()
(in
UpstreamBuilder
)
__instance_size__
(in
BetaAlphaBetaMotifCAP
)
__init__()
(in
UniqueConstraintAP
)
__init__()
(in
UpstreamBuilderAP
)
__instance_size__
(in
BetaAlphaBetaMotifSet
)
__init__()
(in
UniqueConstraintCAP
)
__init__()
(in
UpstreamBuilderCAP
)
__instance_size__
(in
BetaAlphaBetaMotifSetAP
)
__init__()
(in
__CPP_Constraint__
)
__init__()
(in
UpstreamResTypeGeometry
)
__instance_size__
(in
BetaAlphaBetaMotifSetCAP
)
__init__()
(in
__CPP_DbBigInt__
)
__init__()
(in
UpstreamResTypeGeometryAP
)
__instance_size__
(in
DimerPairing
)
__init__()
(in
__CPP_DbDataType__
)
__init__()
(in
UpstreamResTypeGeometryCAP
)
__instance_size__
(in
DimerPairingAP
)
__init__()
(in
__CPP_DbDouble__
)
__init__()
(in
UpstreamResidueProcessor
)
__instance_size__
(in
DimerPairingCAP
)
__init__()
(in
__CPP_DbInteger__
)
__init__()
(in
UpstreamResidueProcessorAP
)
__instance_size__
(in
DimerPairings
)
__init__()
(in
__CPP_DbReal__
)
__init__()
(in
UpstreamResidueProcessorCAP
)
__instance_size__
(in
DimerPairingsAP
)
__init__()
(in
__CPP_DbTextKey__
)
__init__()
(in
__CPP_DunbrackSCSampler__
)
__instance_size__
(in
DimerPairingsCAP
)
__init__()
(in
__CPP_DbText__
)
__init__()
(in
__CPP_ProteinSCSampler__
)
__instance_size__
(in
HSSTriplet
)
__init__()
(in
__CPP_DbUUID__
)
__init__()
(in
__CPP_ProteinUpstreamBuilder__
)
__instance_size__
(in
HSSTripletAP
)
__init__()
(in
__CPP_GreaterThanConstraint__
)
__init__()
(in
__CPP_ScaffoldBuildPoint__
)
__instance_size__
(in
HSSTripletCAP
)
__init__()
(in
__CPP_UniqueConstraint__
)
__init__()
(in
__CPP_UpstreamBuilder__
)
__instance_size__
(in
HSSTripletSet
)
__init__()
(in
BasicDataCache
)
__init__()
(in
__CPP_UpstreamResidueProcessor__
)
__instance_size__
(in
HSSTripletSetAP
)
__init__()
(in
BasicDataCacheAP
)
__init__()
(in
BuildingBlockInterfaceOperation
)
__instance_size__
(in
HSSTripletSetCAP
)
__init__()
(in
BasicDataCacheCAP
)
__init__()
(in
BuildingBlockInterfaceOperationAP
)
__instance_size__
(in
HelixAP
)
__init__()
(in
CacheableData
)
__init__()
(in
BuildingBlockInterfaceOperationCAP
)
__instance_size__
(in
HelixCAP
)
__init__()
(in
CacheableDataAP
)
__init__()
(in
BuildingBlockInterfaceOperationCreator
)
__instance_size__
(in
HelixPairing
)
__init__()
(in
CacheableDataCAP
)
__init__()
(in
BuildingBlockInterfaceOperationCreatorAP
)
__instance_size__
(in
HelixPairingAP
)
__init__()
(in
CacheableString
)
__init__()
(in
BuildingBlockInterfaceOperationCreatorCAP
)
__instance_size__
(in
HelixPairingCAP
)
__init__()
(in
CacheableStringAP
)
__init__()
(in
ClashCheckFilter
)
__instance_size__
(in
HelixPairingSet
)
__init__()
(in
CacheableStringCAP
)
__init__()
(in
ClashCheckFilterAP
)
__instance_size__
(in
HelixPairingSetAP
)
__init__()
(in
CacheableStringFloatMap
)
__init__()
(in
ClashCheckFilterCAP
)
__instance_size__
(in
HelixPairingSetCAP
)
__init__()
(in
CacheableStringFloatMapAP
)
__init__()
(in
ClashCheckFilterCreator
)
__instance_size__
(in
LoopAP
)
__init__()
(in
CacheableStringFloatMapCAP
)
__init__()
(in
ClashCheckFilterCreatorAP
)
__instance_size__
(in
LoopCAP
)
__init__()
(in
CacheableStringMap
)
__init__()
(in
ClashCheckFilterCreatorCAP
)
__instance_size__
(in
SS_Base
)
__init__()
(in
CacheableStringMapAP
)
__init__()
(in
ExtractSubposeMover
)
__instance_size__
(in
SS_BaseAP
)
__init__()
(in
CacheableStringMapCAP
)
__init__()
(in
ExtractSubposeMoverAP
)
__instance_size__
(in
SS_BaseCAP
)
__init__()
(in
DataCache_CacheableData
)
__init__()
(in
ExtractSubposeMoverCAP
)
__instance_size__
(in
SS_Info2AP
)
__init__()
(in
DataCache_CacheableDataAP
)
__init__()
(in
ExtractSubposeMoverCreator
)
__instance_size__
(in
SS_Info2CAP
)
__init__()
(in
DataCache_CacheableDataCAP
)
__init__()
(in
ExtractSubposeMoverCreatorAP
)
__instance_size__
(in
Sheet
)
__init__()
(in
DataCache_T_basic_datacache_CacheableData_T
)
__init__()
(in
ExtractSubposeMoverCreatorCAP
)
__instance_size__
(in
SheetAP
)
__init__()
(in
DataCache_T_basic_datacache_CacheableData_TAP
)
__init__()
(in
GetRBDOFValues
)
__instance_size__
(in
SheetCAP
)
__init__()
(in
DataCache_T_basic_datacache_CacheableData_TCAP
)
__init__()
(in
GetRBDOFValuesAP
)
__instance_size__
(in
SheetFoldTypeManager
)
__init__()
(in
DataMap
)
__init__()
(in
GetRBDOFValuesCAP
)
__instance_size__
(in
SheetFoldTypeManagerAP
)
__init__()
(in
DataMapAP
)
__init__()
(in
GetRBDOFValuesCreator
)
__instance_size__
(in
SheetFoldTypeManagerCAP
)
__init__()
(in
DataMapCAP
)
__init__()
(in
GetRBDOFValuesCreatorAP
)
__instance_size__
(in
SheetSet
)
__init__()
(in
DiagnosticData
)
__init__()
(in
GetRBDOFValuesCreatorCAP
)
__instance_size__
(in
SheetSetAP
)
__init__()
(in
DiagnosticDataAP
)
__init__()
(in
InterfacePackingFilter
)
__instance_size__
(in
SheetSetCAP
)
__init__()
(in
DiagnosticDataCAP
)
__init__()
(in
InterfacePackingFilterAP
)
__instance_size__
(in
StrandAP
)
__init__()
(in
HierarchicalDataMap
)
__init__()
(in
InterfacePackingFilterCAP
)
__instance_size__
(in
StrandCAP
)
__init__()
(in
HierarchicalDataMapAP
)
__init__()
(in
InterfacePackingFilterCreator
)
__instance_size__
(in
StrandPairing
)
__init__()
(in
HierarchicalDataMapCAP
)
__init__()
(in
InterfacePackingFilterCreatorAP
)
__instance_size__
(in
StrandPairingAP
)
__init__()
(in
SingletonBase_T_basic_datacache_WriteableCacheableDataFactory_T
)
__init__()
(in
InterfacePackingFilterCreatorCAP
)
__instance_size__
(in
StrandPairingCAP
)
__init__()
(in
SingletonBase_T_basic_datacache_WriteableCacheableDataFactory_TAP
)
__init__()
(in
MatDesGreedyOptMutationMover
)
__instance_size__
(in
StrandPairingSet
)
__init__()
(in
SingletonBase_T_basic_datacache_WriteableCacheableDataFactory_TCAP
)
__init__()
(in
MatDesGreedyOptMutationMoverAP
)
__instance_size__
(in
StrandPairingSetAP
)
__init__()
(in
WriteableCacheableData
)
__init__()
(in
MatDesGreedyOptMutationMoverCAP
)
__instance_size__
(in
StrandPairingSetCAP
)
__init__()
(in
WriteableCacheableDataAP
)
__init__()
(in
MatDesGreedyOptMutationMoverCreator
)
__instance_size__
(in
FlexPackerAP
)
__init__()
(in
WriteableCacheableDataCAP
)
__init__()
(in
MatDesGreedyOptMutationMoverCreatorAP
)
__instance_size__
(in
FlexPackerCAP
)
__init__()
(in
WriteableCacheableDataCreator
)
__init__()
(in
MatDesGreedyOptMutationMoverCreatorCAP
)
__instance_size__
(in
OtherContextScoreFunctionAP
)
__init__()
(in
WriteableCacheableDataCreatorAP
)
__init__()
(in
MatDesPointMutationCalculator
)
__instance_size__
(in
OtherContextScoreFunctionCAP
)
__init__()
(in
WriteableCacheableDataCreatorCAP
)
__init__()
(in
MatDesPointMutationCalculatorAP
)
__instance_size__
(in
FlexbbSimAnnealerAP
)
__init__()
(in
WriteableCacheableDataFactory
)
__init__()
(in
MatDesPointMutationCalculatorCAP
)
__instance_size__
(in
FlexbbSimAnnealerCAP
)
__init__()
(in
WriteableCacheableDataFactoryAP
)
__init__()
(in
OligomericAverageDegreeFilter
)
__instance_size__
(in
FlexbbEdgeAP
)
__init__()
(in
WriteableCacheableDataFactoryCAP
)
__init__()
(in
OligomericAverageDegreeFilterAP
)
__instance_size__
(in
FlexbbEdgeCAP
)
__init__()
(in
WriteableCacheableMap
)
__init__()
(in
OligomericAverageDegreeFilterCAP
)
__instance_size__
(in
FlexbbIGFactory
)
__init__()
(in
WriteableCacheableMapAP
)
__init__()
(in
OligomericAverageDegreeFilterCreator
)
__instance_size__
(in
FlexbbIGFactoryAP
)
__init__()
(in
WriteableCacheableMapCAP
)
__init__()
(in
OligomericAverageDegreeFilterCreatorAP
)
__instance_size__
(in
FlexbbIGFactoryCAP
)
__init__()
(in
__CPP_CacheableData__
)
__init__()
(in
OligomericAverageDegreeFilterCreatorCAP
)
__instance_size__
(in
FlexbbInteractionGraphAP
)
__init__()
(in
__CPP_CacheableStringFloatMap__
)
__init__()
(in
SchemePlaceMotifsMover
)
__instance_size__
(in
FlexbbInteractionGraphCAP
)
__init__()
(in
__CPP_CacheableStringMap__
)
__init__()
(in
SchemePlaceMotifsMoverAP
)
__instance_size__
(in
FlexbbNodeAP
)
__init__()
(in
__CPP_CacheableString__
)
__init__()
(in
SchemePlaceMotifsMoverCAP
)
__instance_size__
(in
FlexbbNodeCAP
)
__init__()
(in
__CPP_DiagnosticData__
)
__init__()
(in
SchemePlaceMotifsMoverCreator
)
__instance_size__
(in
FlexbbSparseMatrixIndexAP
)
__init__()
(in
__CPP_WriteableCacheableDataCreator__
)
__init__()
(in
SchemePlaceMotifsMoverCreatorAP
)
__instance_size__
(in
FlexbbSparseMatrixIndexCAP
)
__init__()
(in
__CPP_WriteableCacheableData__
)
__init__()
(in
SchemePlaceMotifsMoverCreatorCAP
)
__instance_size__
(in
MinimalistFlexbbEdgeAP
)
__init__()
(in
__CPP_WriteableCacheableMap__
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
__instance_size__
(in
MinimalistFlexbbEdgeCAP
)
__init__()
(in
Timer
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
__instance_size__
(in
MinimalistFlexbbInteractionGraph
)
__init__()
(in
TimerAP
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
__instance_size__
(in
MinimalistFlexbbInteractionGraphAP
)
__init__()
(in
TimerCAP
)
__init__()
(in
SingletonBase_T_protocols_matdes_SymDofMoverSampler_T
)
__instance_size__
(in
MinimalistFlexbbInteractionGraphCAP
)
__init__()
(in
float4
)
__init__()
(in
SingletonBase_T_protocols_matdes_SymDofMoverSampler_TAP
)
__instance_size__
(in
MinimalistFlexbbNodeAP
)
__init__()
(in
float4AP
)
__init__()
(in
SingletonBase_T_protocols_matdes_SymDofMoverSampler_TCAP
)
__instance_size__
(in
MinimalistFlexbbNodeCAP
)
__init__()
(in
float4CAP
)
__init__()
(in
SymDofMover
)
__instance_size__
(in
OTFFlexbbEdgeAP
)
__init__()
(in
DbMoverMessageListener
)
__init__()
(in
SymDofMoverAP
)
__instance_size__
(in
OTFFlexbbEdgeCAP
)
__init__()
(in
DbMoverMessageListenerAP
)
__init__()
(in
SymDofMoverCAP
)
__instance_size__
(in
OTFFlexbbInteractionGraphAP
)
__init__()
(in
DbMoverMessageListenerCAP
)
__init__()
(in
SymDofMoverCreator
)
__instance_size__
(in
OTFFlexbbInteractionGraphCAP
)
__init__()
(in
MessageListener
)
__init__()
(in
SymDofMoverCreatorAP
)
__instance_size__
(in
OTFFlexbbNodeAP
)
__init__()
(in
MessageListenerAP
)
__init__()
(in
SymDofMoverCreatorCAP
)
__instance_size__
(in
OTFFlexbbNodeCAP
)
__init__()
(in
MessageListenerCAP
)
__init__()
(in
SymDofMoverSampler
)
__instance_size__
(in
PrecomputedFlexbbInteractionGraphAP
)
__init__()
(in
MessageListenerFactory
)
__init__()
(in
SymDofMoverSamplerAP
)
__instance_size__
(in
PrecomputedFlexbbInteractionGraphCAP
)
__init__()
(in
MessageListenerFactoryAP
)
__init__()
(in
SymDofMoverSamplerCAP
)
__instance_size__
(in
FlexbbRotamerSetAP
)
__init__()
(in
MessageListenerFactoryCAP
)
__init__()
(in
SymUnsatHbondFilter
)
__instance_size__
(in
FlexbbRotamerSetCAP
)
__init__()
(in
SingletonBase_T_basic_message_listening_MessageListenerFactory_T
)
__init__()
(in
SymUnsatHbondFilterAP
)
__instance_size__
(in
FlexbbRotamerSetsAP
)
__init__()
(in
SingletonBase_T_basic_message_listening_MessageListenerFactory_TAP
)
__init__()
(in
SymUnsatHbondFilterCAP
)
__instance_size__
(in
FlexbbRotamerSetsCAP
)
__init__()
(in
SingletonBase_T_basic_message_listening_MessageListenerFactory_TCAP
)
__init__()
(in
SymUnsatHbondFilterCreator
)
__instance_size__
(in
FlexPepDockingAbInitioAP
)
__init__()
(in
__CPP_DbMoverMessageListener__
)
__init__()
(in
SymUnsatHbondFilterCreatorAP
)
__instance_size__
(in
FlexPepDockingAbInitioCAP
)
__init__()
(in
__CPP_MessageListener__
)
__init__()
(in
SymUnsatHbondFilterCreatorCAP
)
__instance_size__
(in
FlexPepDockingFlags
)
__init__()
(in
FallbackConfiguration
)
__init__()
(in
__CPP_BuildingBlockInterfaceOperationCreator__
)
__instance_size__
(in
FlexPepDockingFlagsAP
)
__init__()
(in
FallbackConfigurationAP
)
__init__()
(in
__CPP_BuildingBlockInterfaceOperation__
)
__instance_size__
(in
FlexPepDockingFlagsCAP
)
__init__()
(in
FallbackConfigurationCAP
)
__init__()
(in
__CPP_ClashCheckFilterCreator__
)
__instance_size__
(in
FlexPepDockingLowResAP
)
__init__()
(in
FallbackConfigurationCreator
)
__init__()
(in
__CPP_ClashCheckFilter__
)
__instance_size__
(in
FlexPepDockingLowResCAP
)
__init__()
(in
FallbackConfigurationCreatorAP
)
__init__()
(in
__CPP_ExtractSubposeMoverCreator__
)
__instance_size__
(in
FlexPepDockingPoseMetrics
)
__init__()
(in
FallbackConfigurationCreatorCAP
)
__init__()
(in
__CPP_ExtractSubposeMover__
)
__instance_size__
(in
FlexPepDockingPoseMetricsAP
)
__init__()
(in
FallbackConfigurationFactory
)
__init__()
(in
__CPP_GetRBDOFValuesCreator__
)
__instance_size__
(in
FlexPepDockingPoseMetricsCAP
)
__init__()
(in
FallbackConfigurationFactoryAP
)
__init__()
(in
__CPP_GetRBDOFValues__
)
__instance_size__
(in
FlexPepDockingProtocolAP
)
__init__()
(in
FallbackConfigurationFactoryCAP
)
__init__()
(in
__CPP_InterfacePackingFilterCreator__
)
__instance_size__
(in
FlexPepDockingProtocolCAP
)
__init__()
(in
JobOptions
)
__init__()
(in
__CPP_InterfacePackingFilter__
)
__instance_size__
(in
FlexPepDockingProtocolCreatorAP
)
__init__()
(in
JobOptionsAP
)
__init__()
(in
__CPP_MatDesGreedyOptMutationMoverCreator__
)
__instance_size__
(in
FlexPepDockingProtocolCreatorCAP
)
__init__()
(in
JobOptionsCAP
)
__init__()
(in
__CPP_MatDesGreedyOptMutationMover__
)
__instance_size__
(in
FloppyTailMoverAP
)
__init__()
(in
LazyResourceManagerAP
)
__init__()
(in
__CPP_OligomericAverageDegreeFilterCreator__
)
__instance_size__
(in
FloppyTailMoverCAP
)
__init__()
(in
LazyResourceManagerCAP
)
__init__()
(in
__CPP_OligomericAverageDegreeFilter__
)
__instance_size__
(in
CombinedTaskOperationAP
)
__init__()
(in
ResourceConfiguration
)
__init__()
(in
__CPP_SchemePlaceMotifsMoverCreator__
)
__instance_size__
(in
CombinedTaskOperationCAP
)
__init__()
(in
ResourceConfigurationAP
)
__init__()
(in
__CPP_SchemePlaceMotifsMover__
)
__instance_size__
(in
DesignTask
)
__init__()
(in
ResourceConfigurationCAP
)
__init__()
(in
__CPP_SymDofMoverCreator__
)
__instance_size__
(in
DesignTaskAP
)
__init__()
(in
ResourceLoader
)
__init__()
(in
__CPP_SymDofMover__
)
__instance_size__
(in
DesignTaskCAP
)
__init__()
(in
ResourceLoaderAP
)
__init__()
(in
__CPP_SymUnsatHbondFilterCreator__
)
__instance_size__
(in
DesignTask_LayerAP
)
__init__()
(in
ResourceLoaderCAP
)
__init__()
(in
__CPP_SymUnsatHbondFilter__
)
__instance_size__
(in
DesignTask_LayerCAP
)
__init__()
(in
ResourceLoaderCreator
)
__init__()
(in
CartesianMD
)
__instance_size__
(in
DesignTask_NormalAP
)
__init__()
(in
ResourceLoaderCreatorAP
)
__init__()
(in
CartesianMDAP
)
__instance_size__
(in
DesignTask_NormalCAP
)
__init__()
(in
ResourceLoaderCreatorCAP
)
__init__()
(in
CartesianMDCAP
)
__instance_size__
(in
FilterStructs
)
__init__()
(in
ResourceLoaderFactory
)
__init__()
(in
CartesianMDCreator
)
__instance_size__
(in
FilterStructsAP
)
__init__()
(in
ResourceLoaderFactoryAP
)
__init__()
(in
CartesianMDCreatorAP
)
__instance_size__
(in
FilterStructsCAP
)
__init__()
(in
ResourceLoaderFactoryCAP
)
__init__()
(in
CartesianMDCreatorCAP
)
__instance_size__
(in
FilterStructs_PackstatAP
)
__init__()
(in
ResourceLocator
)
__init__()
(in
Constraint
)
__instance_size__
(in
FilterStructs_PackstatCAP
)
__init__()
(in
ResourceLocatorAP
)
__init__()
(in
ConstraintAP
)
__instance_size__
(in
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FragmentCandidateAP
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FragmentPicker
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OOO
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pair_Real_Real
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SymmetricAddMembraneMover
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NonlocalPair
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SymmetricAddMembraneMoverCreator
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ABEGO_SS_ConfigAP
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pair_Size_Real
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SymmetricAddMembraneMoverCreatorAP
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ABEGO_SS_ConfigCAP
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pair_Size_Size
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SymmetricAddMembraneMoverCreatorCAP
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ABEGO_SS_Map
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pair_Size_SymDof
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ABEGO_SS_MapAP
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pair_Size_string
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ABEGO_SS_MapCAP
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pair_char_pair_Size_Size
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SingletonBase_T_core_chemical_ChemicalManager_T
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pair_int_int
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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QuotaCollectorAP
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VisualizeEmbeddingMover
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QuotaCollectorCAP
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VisualizeEmbeddingMoverAP
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QuotaConfig
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VisualizeEmbeddingMoverCAP
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QuotaConfigAP
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VisualizeEmbeddingMoverCreator
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VisualizeEmbeddingMoverCreatorAP
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QuotaPoolAP
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vector1_AtomID
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VisualizeEmbeddingMoverCreatorCAP
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QuotaPoolCAP
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vector1_Pose
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VisualizeMembraneMover
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QuotaSelectorAP
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vector1_PoseOP
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VisualizeMembraneMoverAP
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QuotaSelectorCAP
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vector1_ScoreType
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VisualizeMembraneMoverCAP
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SecondaryStructurePoolAP
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vector1_core_conformation_Atom
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VisualizeMembraneMoverCreator
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SecondaryStructurePoolCAP
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AdaptiveScoreHistogram
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AdaptiveScoreHistogramAP
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AddZincSiteConstraints
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AtomBasedConstraintsScoreAP
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__init__()
(in
AddProtonChi
)
__init__()
(in
MotifCAP
)
__instance_size__
(in
GunnCostScoreCAP
)
__init__()
(in
AddProtonChiAP
)
__init__()
(in
MotifDnaPacker
)
__instance_size__
(in
GunnTuple
)
__init__()
(in
AddProtonChiCAP
)
__init__()
(in
MotifDnaPackerAP
)
__instance_size__
(in
GunnTupleAP
)
__init__()
(in
Adduct
)
__init__()
(in
MotifDnaPackerCAP
)
__instance_size__
(in
GunnTupleCAP
)
__init__()
(in
AdductAP
)
__init__()
(in
MotifDnaPackerCreator
)
__instance_size__
(in
HydrophobicityProfileSimilarityAP
)
__init__()
(in
AdductCAP
)
__init__()
(in
MotifDnaPackerCreatorAP
)
__instance_size__
(in
HydrophobicityProfileSimilarityCAP
)
__init__()
(in
AppendInterchangeabilityGroup_String
)
__init__()
(in
MotifDnaPackerCreatorCAP
)
__instance_size__
(in
HydrophobicitySimilarityAP
)
__init__()
(in
AppendInterchangeabilityGroup_StringAP
)
__init__()
(in
MotifHit
)
__instance_size__
(in
HydrophobicitySimilarityCAP
)
__init__()
(in
AppendInterchangeabilityGroup_StringCAP
)
__init__()
(in
MotifHitAP
)
__instance_size__
(in
InterbondAngleScoreAP
)
__init__()
(in
AppendMainchainAtom
)
__init__()
(in
MotifHitCAP
)
__instance_size__
(in
InterbondAngleScoreCAP
)
__init__()
(in
AppendMainchainAtomAP
)
__init__()
(in
MotifLibrary
)
__instance_size__
(in
JCouplingAP
)
__init__()
(in
AppendMainchainAtomCAP
)
__init__()
(in
MotifLibraryAP
)
__instance_size__
(in
JCouplingCAP
)
__init__()
(in
AromaticAtomFilter
)
__init__()
(in
MotifLibraryCAP
)
__instance_size__
(in
LAMBEGO_SimilarityAP
)
__init__()
(in
AromaticAtomFilterAP
)
__init__()
(in
MotifSearch
)
__instance_size__
(in
LAMBEGO_SimilarityCAP
)
__init__()
(in
AromaticAtomFilterCAP
)
__init__()
(in
MotifSearchAP
)
__instance_size__
(in
MakeABEGO_SS_ScoreAP
)
__init__()
(in
Atom
)
__init__()
(in
MotifSearchCAP
)
__instance_size__
(in
MakeABEGO_SS_ScoreCAP
)
__init__()
(in
AtomAP
)
__init__()
(in
SingleMotif
)
__instance_size__
(in
MakeAmbigCSScoreAP
)
__init__()
(in
AtomCAP
)
__init__()
(in
SingleMotifAP
)
__instance_size__
(in
MakeAmbigCSScoreCAP
)
__init__()
(in
AtomICoor
)
__init__()
(in
SingleMotifCAP
)
__instance_size__
(in
MakeAtomPairConstraintsScoreAP
)
__init__()
(in
AtomICoorAP
)
__init__()
(in
__CPP_MotifDnaPackerCreator__
)
__instance_size__
(in
MakeAtomPairConstraintsScoreCAP
)
__init__()
(in
AtomICoorCAP
)
__init__()
(in
__CPP_MotifDnaPacker__
)
__instance_size__
(in
MakeBFactorAP
)
__init__()
(in
AtomType
)
__init__()
(in
__CPP_Motif__
)
__instance_size__
(in
MakeBFactorCAP
)
__init__()
(in
AtomTypeAP
)
__init__()
(in
CompositionMover
)
__instance_size__
(in
MakeCSScoreAP
)
__init__()
(in
AtomTypeCAP
)
__init__()
(in
CompositionMoverAP
)
__instance_size__
(in
MakeCSScoreCAP
)
__init__()
(in
AtomTypeDatabaseIO
)
__init__()
(in
CompositionMoverCAP
)
__instance_size__
(in
MakeConstScoreAP
)
__init__()
(in
AtomTypeDatabaseIOAP
)
__init__()
(in
CycleMover
)
__instance_size__
(in
MakeConstScoreCAP
)
__init__()
(in
AtomTypeDatabaseIOCAP
)
__init__()
(in
CycleMoverAP
)
__instance_size__
(in
MakeDihedralConstraintsScoreAP
)
__init__()
(in
AtomTypeSet
)
__init__()
(in
CycleMoverCAP
)
__instance_size__
(in
MakeDihedralConstraintsScoreCAP
)
__init__()
(in
AtomTypeSetAP
)
__init__()
(in
CyclicMover
)
__instance_size__
(in
MakeDisulfideDistanceAP
)
__init__()
(in
AtomTypeSetCAP
)
__init__()
(in
CyclicMoverAP
)
__instance_size__
(in
MakeDisulfideDistanceCAP
)
__init__()
(in
AutomorphismIterator
)
__init__()
(in
CyclicMoverCAP
)
__instance_size__
(in
MakeDisulfideIdentityAP
)
__init__()
(in
AutomorphismIteratorAP
)
__init__()
(in
DsspMover
)
__instance_size__
(in
MakeDisulfideIdentityCAP
)
__init__()
(in
AutomorphismIteratorCAP
)
__init__()
(in
DsspMoverAP
)
__instance_size__
(in
MakeFragmentAllAtomCrmsdAP
)
__init__()
(in
Bond
)
__init__()
(in
DsspMoverCAP
)
__instance_size__
(in
MakeFragmentAllAtomCrmsdCAP
)
__init__()
(in
BondAP
)
__init__()
(in
DsspMoverCreator
)
__instance_size__
(in
MakeFragmentChunkCrmsAP
)
__init__()
(in
BondCAP
)
__init__()
(in
DsspMoverCreatorAP
)
__instance_size__
(in
MakeFragmentChunkCrmsCAP
)
__init__()
(in
ChemicalManager
)
__init__()
(in
DsspMoverCreatorCAP
)
__instance_size__
(in
MakeFragmentCrmsdAP
)
__init__()
(in
ChemicalManagerAP
)
__init__()
(in
DualMonteCarlo
)
__instance_size__
(in
MakeFragmentCrmsdCAP
)
__init__()
(in
ChemicalManagerCAP
)
__init__()
(in
DualMonteCarloAP
)
__instance_size__
(in
MakeFragmentCrmsdResDepthAP
)
__init__()
(in
DeleteAtom
)
__init__()
(in
DualMonteCarloCAP
)
__instance_size__
(in
MakeFragmentCrmsdResDepthCAP
)
__init__()
(in
DeleteAtomAP
)
__init__()
(in
EXCN_Converged
)
__instance_size__
(in
MakeFragmentDMEAP
)
__init__()
(in
DeleteAtomCAP
)
__init__()
(in
EXCN_ConvergedAP
)
__instance_size__
(in
MakeFragmentDMECAP
)
__init__()
(in
DeleteMetalbindingAtom
)
__init__()
(in
EXCN_ConvergedCAP
)
__instance_size__
(in
MakeFragmentScoringMethod
)
__init__()
(in
DeleteMetalbindingAtomAP
)
__init__()
(in
FastLinearFunc
)
__instance_size__
(in
MakeFragmentScoringMethodAP
)
__init__()
(in
DeleteMetalbindingAtomCAP
)
__init__()
(in
FastLinearFuncAP
)
__instance_size__
(in
MakeFragmentScoringMethodCAP
)
__init__()
(in
DeleteProperty
)
__init__()
(in
FastLinearFuncCAP
)
__instance_size__
(in
MakeGunnCostScoreAP
)
__init__()
(in
DeletePropertyAP
)
__init__()
(in
FilterMover
)
__instance_size__
(in
MakeGunnCostScoreCAP
)
__init__()
(in
DeletePropertyCAP
)
__init__()
(in
FilterMoverAP
)
__instance_size__
(in
MakeHydrophobicityProfileSimilarityAP
)
__init__()
(in
DeleteTerminalChi
)
__init__()
(in
FilterMoverCAP
)
__instance_size__
(in
MakeHydrophobicityProfileSimilarityCAP
)
__init__()
(in
DeleteTerminalChiAP
)
__init__()
(in
FilterReporterMover
)
__instance_size__
(in
MakeHydrophobicitySimilarityAP
)
__init__()
(in
DeleteTerminalChiCAP
)
__init__()
(in
FilterReporterMoverAP
)
__instance_size__
(in
MakeHydrophobicitySimilarityCAP
)
__init__()
(in
ElectronConfiguration
)
__init__()
(in
FilterReporterMoverCAP
)
__instance_size__
(in
MakeInterbondAngleScoreAP
)
__init__()
(in
ElectronConfigurationAP
)
__init__()
(in
GeometricFunc
)
__instance_size__
(in
MakeInterbondAngleScoreCAP
)
__init__()
(in
ElectronConfigurationCAP
)
__init__()
(in
GeometricFuncAP
)
__instance_size__
(in
MakeJCouplingAP
)
__init__()
(in
Element
)
__init__()
(in
GeometricFuncCAP
)
__instance_size__
(in
MakeJCouplingCAP
)
__init__()
(in
ElementAP
)
__init__()
(in
IfMover
)
__instance_size__
(in
MakeLAMBEGO_SimilarityAP
)
__init__()
(in
ElementCAP
)
__init__()
(in
IfMoverAP
)
__instance_size__
(in
MakeLAMBEGO_SimilarityCAP
)
__init__()
(in
ElementSet
)
__init__()
(in
IfMoverCAP
)
__instance_size__
(in
MakeMidPhiOutAP
)
__init__()
(in
ElementSetAP
)
__init__()
(in
IfMoverCreator
)
__instance_size__
(in
MakeMidPhiOutCAP
)
__init__()
(in
ElementSetCAP
)
__init__()
(in
IfMoverCreatorAP
)
__instance_size__
(in
MakeMidPsiOutAP
)
__init__()
(in
HeavyAtomFilter
)
__init__()
(in
IfMoverCreatorCAP
)
__instance_size__
(in
MakeMidPsiOutCAP
)
__init__()
(in
HeavyAtomFilterAP
)
__init__()
(in
InvGeometricFunc
)
__instance_size__
(in
MakePCS_FragDistanceAP
)
__init__()
(in
HeavyAtomFilterCAP
)
__init__()
(in
InvGeometricFuncAP
)
__instance_size__
(in
MakePCS_FragDistanceCAP
)
__init__()
(in
HeavyAtomWithHydrogensFilter
)
__init__()
(in
InvGeometricFuncCAP
)
__instance_size__
(in
MakePartialSecondarySimilarityAP
)
__init__()
(in
HeavyAtomWithHydrogensFilterAP
)
__init__()
(in
IteratedConvergenceMover
)
__instance_size__
(in
MakePartialSecondarySimilarityCAP
)
__init__()
(in
HeavyAtomWithHydrogensFilterCAP
)
__init__()
(in
IteratedConvergenceMoverAP
)
__instance_size__
(in
MakePhiAP
)
__init__()
(in
HeavyAtomWithPolarHydrogensFilter
)
__init__()
(in
IteratedConvergenceMoverCAP
)
__instance_size__
(in
MakePhiCAP
)
__init__()
(in
HeavyAtomWithPolarHydrogensFilterAP
)
__init__()
(in
IteratedConvergenceMoverCreator
)
__instance_size__
(in
MakePhiPsiRmsdAP
)
__init__()
(in
HeavyAtomWithPolarHydrogensFilterCAP
)
__init__()
(in
IteratedConvergenceMoverCreatorAP
)
__instance_size__
(in
MakePhiPsiRmsdCAP
)
__init__()
(in
HydrogenAtomFilter
)
__init__()
(in
IteratedConvergenceMoverCreatorCAP
)
__instance_size__
(in
MakePhiPsiSquareWellAP
)
__init__()
(in
HydrogenAtomFilterAP
)
__init__()
(in
JumpOutMover
)
__instance_size__
(in
MakePhiPsiSquareWellCAP
)
__init__()
(in
HydrogenAtomFilterCAP
)
__init__()
(in
JumpOutMoverAP
)
__instance_size__
(in
MakeProfileScoreAP
)
__init__()
(in
ICoorAtomID
)
__init__()
(in
JumpOutMoverCAP
)
__instance_size__
(in
MakeProfileScoreBlosum62AP
)
__init__()
(in
ICoorAtomIDAP
)
__init__()
(in
LinearFunc
)
__instance_size__
(in
MakeProfileScoreBlosum62CAP
)
__init__()
(in
ICoorAtomIDCAP
)
__init__()
(in
LinearFuncAP
)
__instance_size__
(in
MakeProfileScoreCAP
)
__init__()
(in
IdealBondLengthSet
)
__init__()
(in
LinearFuncCAP
)
__instance_size__
(in
MakeProfileScoreDistWeightAP
)
__init__()
(in
IdealBondLengthSetAP
)
__init__()
(in
MCShowMover
)
__instance_size__
(in
MakeProfileScoreDistWeightCAP
)
__init__()
(in
IdealBondLengthSetCAP
)
__init__()
(in
MCShowMoverAP
)
__instance_size__
(in
MakeProfileScoreL1AP
)
__init__()
(in
MMAtomType
)
__init__()
(in
MCShowMoverCAP
)
__instance_size__
(in
MakeProfileScoreL1CAP
)
__init__()
(in
MMAtomTypeAP
)
__init__()
(in
MonteCarlo
)
__instance_size__
(in
MakeProfileScoreStructL1AP
)
__init__()
(in
MMAtomTypeCAP
)
__init__()
(in
MonteCarloAP
)
__instance_size__
(in
MakeProfileScoreStructL1CAP
)
__init__()
(in
MMAtomTypeSet
)
__init__()
(in
MonteCarloCAP
)
__instance_size__
(in
MakeProfileScoreSubMatrixAP
)
__init__()
(in
MMAtomTypeSetAP
)
__init__()
(in
MonteCarloExceptionConverge
)
__instance_size__
(in
MakeProfileScoreSubMatrixCAP
)
__init__()
(in
MMAtomTypeSetCAP
)
__init__()
(in
MonteCarloExceptionConvergeAP
)
__instance_size__
(in
MakeProlinePhiScoreAP
)
__init__()
(in
NCAARotLibPath
)
__init__()
(in
MonteCarloExceptionConvergeCAP
)
__instance_size__
(in
MakeProlinePhiScoreCAP
)
__init__()
(in
NCAARotLibPathAP
)
__init__()
(in
MonteCarloUtil
)
__instance_size__
(in
MakePsiAP
)
__init__()
(in
NCAARotLibPathCAP
)
__init__()
(in
MonteCarloUtilAP
)
__instance_size__
(in
MakePsiCAP
)
__init__()
(in
Orbital
)
__init__()
(in
MonteCarloUtilCAP
)
__instance_size__
(in
MakeRDCScoreAP
)
__init__()
(in
OrbitalAP
)
__init__()
(in
MoveMapMover
)
__instance_size__
(in
MakeRDCScoreCAP
)
__init__()
(in
OrbitalCAP
)
__init__()
(in
MoveMapMoverAP
)
__instance_size__
(in
MakeRamaScoreAP
)
__init__()
(in
Patch
)
__init__()
(in
MoveMapMoverCAP
)
__instance_size__
(in
MakeRamaScoreCAP
)
__init__()
(in
PatchAP
)
__init__()
(in
Mover
)
__instance_size__
(in
MakeScoreEValuatorAP
)
__init__()
(in
PatchCAP
)
__init__()
(in
MoverAP
)
__instance_size__
(in
MakeScoreEValuatorCAP
)
__init__()
(in
PatchCase
)
__init__()
(in
MoverApplyingMover
)
__instance_size__
(in
MakeSecondaryIdentityAP
)
__init__()
(in
PatchCaseAP
)
__init__()
(in
MoverApplyingMoverAP
)
__instance_size__
(in
MakeSecondaryIdentityCAP
)
__init__()
(in
PatchCaseCAP
)
__init__()
(in
MoverApplyingMoverCAP
)
__instance_size__
(in
MakeSecondarySimilarityAP
)
__init__()
(in
PatchOperation
)
__init__()
(in
MoverCAP
)
__instance_size__
(in
MakeSecondarySimilarityCAP
)
__init__()
(in
PatchOperationAP
)
__init__()
(in
MoverContainer
)
__instance_size__
(in
MakeSequenceIdentityAP
)
__init__()
(in
PatchOperationCAP
)
__init__()
(in
MoverContainerAP
)
__instance_size__
(in
MakeSequenceIdentityCAP
)
__init__()
(in
PolarHydrogenFilter
)
__init__()
(in
MoverContainerCAP
)
__instance_size__
(in
MakeSolventAccessibilityAP
)
__init__()
(in
PolarHydrogenFilterAP
)
__init__()
(in
MoverCreator
)
__instance_size__
(in
MakeSolventAccessibilityCAP
)
__init__()
(in
PolarHydrogenFilterCAP
)
__init__()
(in
MoverCreatorAP
)
__instance_size__
(in
MakeTalosSSSimilarityAP
)
__init__()
(in
PrependMainchainAtom
)
__init__()
(in
MoverCreatorCAP
)
__instance_size__
(in
MakeTalosSSSimilarityCAP
)
__init__()
(in
PrependMainchainAtomAP
)
__init__()
(in
MoverFactory
)
__instance_size__
(in
MakeTorsionBinSimilarityAP
)
__init__()
(in
PrependMainchainAtomCAP
)
__init__()
(in
MoverFactoryAP
)
__instance_size__
(in
MakeTorsionBinSimilarityCAP
)
__init__()
(in
RealFilter
)
__init__()
(in
MoverFactoryCAP
)
__instance_size__
(in
MidPhiOutAP
)
__init__()
(in
RealFilterAP
)
__init__()
(in
MoverForPoseList
)
__instance_size__
(in
MidPhiOutCAP
)
__init__()
(in
RealFilterCAP
)
__init__()
(in
MoverForPoseListAP
)
__instance_size__
(in
MidPsiOutAP
)
__init__()
(in
RedefineChi
)
__init__()
(in
MoverForPoseListCAP
)
__instance_size__
(in
MidPsiOutCAP
)
__init__()
(in
RedefineChiAP
)
__init__()
(in
MoverStatistics
)
__instance_size__
(in
PCS_FragDistanceAP
)
__init__()
(in
RedefineChiCAP
)
__init__()
(in
MoverStatisticsAP
)
__instance_size__
(in
PCS_FragDistanceCAP
)
__init__()
(in
ResConnID
)
__init__()
(in
MoverStatisticsCAP
)
__instance_size__
(in
PValuedFragmentScoreManagerAP
)
__init__()
(in
ResConnIDAP
)
__init__()
(in
NullMover
)
__instance_size__
(in
PValuedFragmentScoreManagerCAP
)
__init__()
(in
ResConnIDCAP
)
__init__()
(in
NullMoverAP
)
__instance_size__
(in
PartialSecondarySimilarityAP
)
__init__()
(in
ResidueConnection
)
__init__()
(in
NullMoverCAP
)
__instance_size__
(in
PartialSecondarySimilarityCAP
)
__init__()
(in
ResidueConnectionAP
)
__init__()
(in
PDBDumpMover
)
__instance_size__
(in
PhiAP
)
__init__()
(in
ResidueConnectionCAP
)
__init__()
(in
PDBDumpMoverAP
)
__instance_size__
(in
PhiCAP
)
__init__()
(in
ResidueDatabaseIO
)
__init__()
(in
PDBDumpMoverCAP
)
__instance_size__
(in
PhiPsiRmsdAP
)
__init__()
(in
ResidueDatabaseIOAP
)
__init__()
(in
PoseCondition
)
__instance_size__
(in
PhiPsiRmsdCAP
)
__init__()
(in
ResidueDatabaseIOCAP
)
__init__()
(in
PoseConditionAP
)
__instance_size__
(in
PhiPsiSquareWellAP
)
__init__()
(in
ResidueLoader
)
__init__()
(in
PoseConditionCAP
)
__instance_size__
(in
PhiPsiSquareWellCAP
)
__init__()
(in
ResidueLoaderAP
)
__init__()
(in
ProfilerMover
)
__instance_size__
(in
ProfileScoreAP
)
__init__()
(in
ResidueLoaderCAP
)
__init__()
(in
ProfilerMoverAP
)
__instance_size__
(in
ProfileScoreBlosum62AP
)
__init__()
(in
ResidueLoaderCreator
)
__init__()
(in
ProfilerMoverCAP
)
__instance_size__
(in
ProfileScoreBlosum62CAP
)
__init__()
(in
ResidueLoaderCreatorAP
)
__init__()
(in
PyMolMover
)
__instance_size__
(in
ProfileScoreCAP
)
__init__()
(in
ResidueLoaderCreatorCAP
)
__init__()
(in
PyMolMoverAP
)
__instance_size__
(in
ProfileScoreDistWeightAP
)
__init__()
(in
ResidueLoaderOptions
)
__init__()
(in
PyMolMoverCAP
)
__instance_size__
(in
ProfileScoreDistWeightCAP
)
__init__()
(in
ResidueLoaderOptionsAP
)
__init__()
(in
PyMolMoverCreator
)
__instance_size__
(in
ProfileScoreL1AP
)
__init__()
(in
ResidueLoaderOptionsCAP
)
__init__()
(in
PyMolMoverCreatorAP
)
__instance_size__
(in
ProfileScoreL1CAP
)
__init__()
(in
ResidueLoaderOptionsCreator
)
__init__()
(in
PyMolMoverCreatorCAP
)
__instance_size__
(in
ProfileScoreStructL1AP
)
__init__()
(in
ResidueLoaderOptionsCreatorAP
)
__init__()
(in
PyMolObserver
)
__instance_size__
(in
ProfileScoreStructL1CAP
)
__init__()
(in
ResidueLoaderOptionsCreatorCAP
)
__init__()
(in
PyMolObserverAP
)
__instance_size__
(in
ProfileScoreSubMatrixAP
)
__init__()
(in
ResidueProperties
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ResiduePropertiesAP
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ResiduePropertiesCAP
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ResidueSelector
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ResidueSelectorAP
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RampingMoverCAP
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RingConformerManagerAP
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RingConformerManagerCAP
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Selector_AA
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Selector_MATCH_VARIANTSCAP
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TorsionFragmentMoverAP
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TorsionFragmentMoverCAP
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VallDataAP
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Selector_PROPERTY
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UDPSocketClientCAP
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VallDataCAP
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Selector_PROPERTYAP
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VectorPoseMover
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GeneralizedKICAP
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Selector_PROPERTYCAP
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VectorPoseMoverAP
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GeneralizedKICCAP
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VectorPoseMoverCAP
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GeneralizedKICCreatorAP
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Selector_UPPER_POSITIONAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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__CPP_GeometricFunc__
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GeneralizedKICperturberAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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GeneralizedKICselector
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SetICoor
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__CPP_JumpOutMover__
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GeneralizedKICselectorAP
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SetICoorAP
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__CPP_LinearFunc__
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GeneralizedKICselectorCAP
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SetICoorCAP
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__CPP_MCShowMover__
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SingletonBase_T_core_chemical_ChemicalManager_T
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SetIO_String
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__CPP_MonteCarloExceptionConverge__
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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DiscreteRandomizerAP
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SetInterchangeabilityGroup_String
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__CPP_MoveMapMover__
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SetInterchangeabilityGroup_StringAP
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__CPP_MoverApplyingMover__
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Entity
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SetInterchangeabilityGroup_StringCAP
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__CPP_MoverContainer__
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EntityAP
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SetMMAtomType
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__CPP_MoverCreator__
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EntityCAP
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__CPP_MoverForPoseList__
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EntityElementAP
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EntityElementCAP
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EntityElementCreator
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__CPP_PoseCondition__
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EntityElementCreatorAP
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__CPP_ProfilerMover__
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EntityElementCreatorCAP
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EntityElementFactoryAP
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DenseIGRepackerCAP
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JobCAP
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SymSlideInfoCAP
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DoubleDenseIGRepacker
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JobDistributorAP
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SymmData
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DoubleDenseIGRepackerAP
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JobDistributorCAP
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SymmDataAP
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DoubleDenseIGRepackerCAP
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JobDistributorFactory
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SymmDataCAP
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DynamicAggregateFunction
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JobDistributorFactoryAP
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SymmDataLoader
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DynamicAggregateFunctionAP
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JobDistributorFactoryCAP
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SymmDataLoaderAP
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DynamicAggregateFunctionCAP
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JobInputter
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SymmDataLoaderCAP
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DynamicAggregateFunctionDriver
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JobInputterAP
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SymmDataLoaderCreator
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DynamicAggregateFunctionDriverAP
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JobInputterCAP
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SymmDataLoaderCreatorAP
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DynamicAggregateFunctionDriverCAP
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JobInputterCreator
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SymmDataLoaderCreatorCAP
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EntityCorrespondence
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JobInputterCreatorAP
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SymmDataOptions
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EntityCorrespondenceAP
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JobInputterCreatorCAP
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SymmDataOptionsAP
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EntityCorrespondenceCAP
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JobInputterFactoryAP
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SymmDataOptionsCAP
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EntityFunc
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JobInputterFactoryCAP
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SymmDataOptionsCreator
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EntityFuncAP
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JobOutputter
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SymmDataOptionsCreatorAP
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EntityFuncCAP
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JobOutputterAP
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SymmDataOptionsCreatorCAP
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EntityFuncExpressionCreator
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JobOutputterCAP
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SymmetricConformation
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EntityFuncExpressionCreatorAP
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JobOutputterCreator
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SymmetricConformationAP
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EntityFuncExpressionCreatorCAP
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JobOutputterCreatorAP
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SymmetricConformationCAP
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ExpExpression
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JobOutputterCreatorCAP
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SymmetryInfo
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ExpExpressionAP
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JobOutputterFactoryAP
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SymmetryInfoAP
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ExpExpressionCAP
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JobOutputterFactoryCAP
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SymmetryInfoCAP
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FASTER_IG_Repacker
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JobOutputterObserver
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VirtualCoordinate
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FASTER_IG_RepackerAP
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JobOutputterObserverAP
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VirtualCoordinateAP
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FASTER_IG_RepackerCAP
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JobOutputterObserverCAP
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VirtualCoordinateCAP
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InSetExpression
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LazySilentFileJobInputterAP
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__CPP_SymmDataLoaderCreator__
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InSetExpressionAP
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LazySilentFileJobInputterCAP
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__CPP_SymmDataLoader__
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InSetExpressionCAP
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LazySilentFileJobInputterCreatorAP
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__CPP_SymmDataOptionsCreator__
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IterativeVectorExpression
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LazySilentFileJobInputterCreatorCAP
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IterativeVectorExpressionAP
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MPIFileBufJobDistributorAP
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IterativeVectorExpressionCAP
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MPIFileBufJobDistributorCAP
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DofPassport
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LnExpression
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MPIMultiCommJobDistributorAP
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DofPassportAP
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LnExpressionAP
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MPIMultiCommJobDistributorCAP
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DofPassportCAP
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LnExpressionCAP
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MPIWorkPartitionJobDistributorAP
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EXCN_Env_Exception
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MPIMultistateFitnessFunction
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MPIWorkPartitionJobDistributorCAP
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EXCN_Env_ExceptionAP
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MPIMultistateFitnessFunctionAP
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MPIWorkPoolJobDistributorAP
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EXCN_Env_ExceptionCAP
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MPIMultistateFitnessFunctionCAP
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MPIWorkPoolJobDistributorCAP
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EXCN_FTSketchGraph
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MultistateAggregateFunction
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MSDJobDistributor
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EXCN_FTSketchGraphAP
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MultistateAggregateFunctionAP
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MSDJobDistributorAP
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EXCN_FTSketchGraphCAP
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MultistateAggregateFunctionCAP
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MSDJobDistributorCAP
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EnvCore
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MultistateFitnessFunction
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MpiFileBufferAP
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EnvCoreAP
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MultistateFitnessFunctionAP
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MpiFileBufferCAP
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EnvCoreCAP
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MultistateFitnessFunctionCAP
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NoOutputJobOutputterAP
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FoldTreeSketch
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NPDPropCalculator
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NoOutputJobOutputterCAP
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FoldTreeSketchAP
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NPDPropCalculatorAP
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NoOutputJobOutputterCreatorAP
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FoldTreeSketchCAP
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NPDPropCalculatorCAP
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NoOutputJobOutputterCreatorCAP
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LocalPosition
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NPDPropCalculatorCreator
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PDBJobInputterAP
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LocalPositionAP
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NPDPropCalculatorCreatorAP
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PDBJobInputterCAP
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LocalPositionCAP
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NPDPropCalculatorCreatorCAP
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PDBJobInputterCreatorAP
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SequenceAnnotation
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PackDaemon
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PDBJobInputterCreatorCAP
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SequenceAnnotationAP
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PackDaemonAP
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PDBJobOutputterAP
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SequenceAnnotationCAP
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PackDaemonCAP
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PDBJobOutputterCAP
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AnnotatedFragData
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PowExpression
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PDBJobOutputterCreatorAP
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AnnotatedFragDataAP
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PowExpressionAP
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PDBJobOutputterCreatorCAP
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AnnotatedFragDataCAP
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PowExpressionCAP
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Parser
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BBTorsionAndAnglesSRFD
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QuickRepacker
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ParserAP
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BBTorsionAndAnglesSRFDAP
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QuickRepackerAP
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ParserCAP
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BBTorsionAndAnglesSRFDCAP
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QuickRepackerCAP
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PoseInputStreamJobInputterAP
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BBTorsionSRFD
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RotamerSubsetRepacker
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PoseInputStreamJobInputterCAP
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BBTorsionSRFDAP
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RotamerSubsetRepackerAP
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PoseInputStreamJobInputterCreatorAP
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BBTorsionSRFDCAP
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RotamerSubsetRepackerCAP
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PoseInputStreamJobInputterCreatorCAP
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BaseCacheUnit
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SingletonBase_T_protocols_genetic_algorithm_EntityElementFactory_T
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ScoreMap
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BaseCacheUnitAP
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SingletonBase_T_protocols_genetic_algorithm_EntityElementFactory_TAP
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ScoreMapAP
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BaseCacheUnitCAP
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SingletonBase_T_protocols_genetic_algorithm_EntityElementFactory_TCAP
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ScoreMapCAP
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ConstFrameIterator
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StructureFileNames
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ScoreOnlyJobOutputterAP
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ConstFrameIteratorAP
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StructureFileNamesAP
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ScoreOnlyJobOutputterCAP
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ConstFrameIteratorCAP
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StructureFileNamesCAP
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ScoreOnlyJobOutputterCreatorAP
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ConstantLengthFragSet
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SurrogateVariableExpression
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ScoreOnlyJobOutputterCreatorCAP
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ConstantLengthFragSetAP
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SurrogateVariableExpressionAP
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ScreeningJobInputterAP
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ConstantLengthFragSetCAP
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SurrogateVariableExpressionCAP
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ScreeningJobInputterCAP
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ConstantLengthFragSetIterator_AP
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TopEntitySet
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ScreeningJobInputterCreatorAP
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ConstantLengthFragSetIterator_CAP
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TopEntitySetAP
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ScreeningJobInputterCreatorCAP
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DownJumpSRFD
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TopEntitySetCAP
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ShuffleFileSystemJobDistributorAP
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DownJumpSRFDAP
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VMax
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ShuffleFileSystemJobDistributorCAP
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DownJumpSRFDCAP
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VMaxAP
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SilentFileJobInputterAP
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FragData
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VMaxBy
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SilentFileJobInputterCAP
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FragDataAP
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VMaxByAP
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SilentFileJobInputterCreatorAP
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FragDataCAP
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VMaxByCAP
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SilentFileJobInputterCreatorCAP
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FragFactory
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VMaxCAP
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SilentFileJobOutputterAP
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FragFactoryAP
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VMin
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SilentFileJobOutputterCAP
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FragFactoryCAP
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VMinAP
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SilentFileJobOutputterCreatorAP
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FragID
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VMinBy
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SilentFileJobOutputterCreatorCAP
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FragIDAP
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VMinByAP
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SingleFileBuffer
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FragIDCAP
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VMinByCAP
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SingleFileBufferAP
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FragID_Iterator
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VMinCAP
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SingleFileBufferCAP
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FragID_IteratorAP
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VariableVectorExpression
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SingletonBase_T_basic_resource_manager_ResourceManager_T
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FragID_IteratorCAP
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VariableVectorExpressionAP
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SingletonBase_T_basic_resource_manager_ResourceManager_TAP
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FragSet
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VariableVectorExpressionCAP
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FragSetAP
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VectorExpression
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FragSetCAP
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VectorExpressionAP
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FragSetCollection
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VectorExpressionCAP
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FragSetCollectionAP
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VectorExpressionCreator
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SingletonBase_T_protocols_jd2_JobInputterFactory_T
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FragSetCollectionCAP
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VectorExpressionCreatorAP
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FragmentIO
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VectorExpressionCreatorCAP
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SingletonBase_T_protocols_jd2_JobInputterFactory_TCAP
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FragmentIOAP
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VectorFunction
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SingletonBase_T_protocols_jd2_JobOutputterFactory_T
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FragmentIOCAP
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VectorFunction2
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SingletonBase_T_protocols_jd2_JobOutputterFactory_TAP
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FragmentRmsd
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VectorFunction2AP
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FragmentRmsdAP
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VectorFunction2CAP
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WriteFileSFBAP
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FragmentRmsdCAP
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VectorFunctionAP
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WriteFileSFBCAP
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Frame
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VectorFunctionCAP
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WriteOut_MpiFileBuffer
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FrameAP
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__CPP_BasicSimAnnealerRepacker__
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WriteOut_MpiFileBufferAP
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FrameCAP
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__CPP_DynamicAggregateFunction__
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WriteOut_MpiFileBufferCAP
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FrameIterator
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__CPP_EntityFuncExpressionCreator__
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AbstractArchiveBase
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FrameIteratorAP
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__CPP_ExpExpression__
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FrameIteratorCAP
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ArchiveBaseAP
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ArchiveManager
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FrameList
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ArchiveManagerAP
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FrameListAP
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ArchiveManagerCAP
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FrameListCAP
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__CPP_NPDPropCalculator__
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BaseArchiveManagerAP
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FrameListIterator_AP
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BaseArchiveManagerCAP
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EXCN_ArchiveAP
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__CPP_VectorExpression__
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SetupPoissonBoltzmannPotentialCAP
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MPIArchiveJobDistributorAP
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SetupPoissonBoltzmannPotentialCreator
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SetupPoissonBoltzmannPotentialCreatorAP
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SetupPoissonBoltzmannPotentialCreatorCAP
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VarianceStatisticsArchiveAP
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__CPP_SetupPoissonBoltzmannPotential__
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VarianceStatisticsArchiveCAP
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AlterSpecDisruptionDriver
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AlterSpecDisruptionDriverAP
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AlterSpecDisruptionDriverCAP
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BluePrintCAP
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UpJumpSRFD
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FragSetLoaderCAP
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UpJumpSRFDCAP
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CCluster
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CClusterAP
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FragmentLibraryManager
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FragmentLibraryManagerAP
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FingerprintBase
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FragmentLibraryManagerCAP
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TaskOperationLoaderCreatorCAP
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Book_T_core_fragment_picking_old_vall_VallResidues_T
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BaseJobDistributorAP
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Book_VallResidues
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GenPharmacophoreCAP
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Book_VallResiduesAP
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NonPlaidFingerprint
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Book_VallResiduesCAP
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PlainPdbJobDistributor
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PCluster
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PlainSilentFileJobDistributor
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Librarian_VallFragmentScore_VallFragmentEval_VallFragmentGen_VallLibrary
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PClusterSetCAP
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PlainSilentFileJobDistributorAP
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Librarian_VallFragmentScore_VallFragmentEval_VallFragmentGen_VallLibraryAP
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PlaidFingerprint
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PlainSilentFileJobDistributorCAP
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Librarian_VallFragmentScore_VallFragmentEval_VallFragmentGen_VallLibraryCAP
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PlaidFingerprintAP
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vector1_basicjob
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PlaidFingerprintCAP
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BaseDisulfPairingLibrary
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PocketConstraint
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BaseDisulfPairingLibraryAP
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PocketConstraintAP
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BaseDisulfPairingLibraryCAP
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Library_VallSections
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PocketConstraintCAP
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BaseJumpSetup
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Library_VallSectionsAP
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PocketConstraintCreator
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Library_VallSectionsCAP
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PocketConstraintCreatorAP
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BaseJumpSetupCAP
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VallLibrarian
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BasePairingLibrary
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VallLibrarianAP
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PocketExemplarMultifunc
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VallLibrary
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PocketExemplarMultifuncCAP
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VallLibraryAP
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PocketGrid
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VallLibraryCAP
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VallResidue
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VallResidueAP
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VallResidues
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Interval
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VallSection
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ClosureSolutionCAP
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EdgeListElement
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AtomicContactCountFilterAP
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IdealParameters
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EdgeListElementAP
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AtomicContactCountFilterCAP
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IdealParametersAP
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EdgeListElementCAP
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AtomicContactCountFilterCreator
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IdealParametersCAP
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EdgeListIterator
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AtomicContactCountFilterCreatorAP
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KicMover
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EdgeListIteratorAP
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AtomicContactCountFilterCreatorCAP
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KicMoverAP
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EdgeListIteratorCAP
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AverageDegreeFilter
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KicMoverCAP
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Graph
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AverageDegreeFilterAP
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KicMoverCreatorAP
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GraphAP
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AverageDegreeFilterCAP
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KicMoverCreatorCAP
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GraphCAP
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AverageDegreeFilterCreator
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BondAnglePerturberAP
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Node
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AverageDegreeFilterCreatorAP
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BondAnglePerturberCAP
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NodeAP
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AverageDegreeFilterCreatorCAP
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FragmentPerturberAP
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NodeCAP
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BindingStrainFilter
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FragmentPerturberCAP
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BindingStrainFilterAP
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IdealizeNonPhiPsiCAP
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LogFilePerturberAP
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AtomID
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BindingStrainFilterCreatorAP
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LogFilePerturberCAP
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AtomIDAP
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BindingStrainFilterCreatorCAP
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OmegaPerturberAP
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AtomIDCAP
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BoltzmannFilter
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OmegaPerturberCAP
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AtomID_Map_AtomID
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BoltzmannFilterAP
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Perturber
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AtomID_Map_AtomIDAP
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BoltzmannFilterCAP
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PerturberAP
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AtomID_Map_AtomIDCAP
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BoltzmannFilterCreator
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PerturberCAP
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AtomID_Map_Real
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BoltzmannFilterCreatorAP
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PerturberSetAP
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AtomID_Map_RealAP
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BoltzmannFilterCreatorCAP
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PerturberSetCAP
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AtomID_Map_RealCAP
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ClashWithTargetFilter
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Rama2bPerturberAP
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AtomID_Map_T_bool_T
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ClashWithTargetFilterAP
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Rama2bPerturberCAP
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AtomID_Map_T_bool_TAP
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ClashWithTargetFilterCAP
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RamaPerturberAP
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AtomID_Map_T_bool_TCAP
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ClashWithTargetFilterCreator
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RamaPerturberCAP
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AtomID_Map_T_core_id_AtomID_T
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ClashWithTargetFilterCreatorAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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AtomID_Map_T_core_id_AtomID_TAP
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ClashWithTargetFilterCreatorCAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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AtomID_Map_T_core_id_AtomID_TCAP
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DesignableResiduesFilter
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AtomID_Map_T_double_T
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DesignableResiduesFilterAP
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UniformPerturberAP
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AtomID_Map_T_double_TAP
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DesignableResiduesFilterCAP
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UniformPerturberCAP
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AtomID_Map_T_double_TCAP
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DesignableResiduesFilterCreator
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VicinityPerturberAP
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AtomID_Map_T_numeric_xyzVector_T_double_T__T
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DesignableResiduesFilterCreatorAP
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VicinityPerturberCAP
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AtomID_Map_T_numeric_xyzVector_T_double_T__TAP
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DesignableResiduesFilterCreatorCAP
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WalkingBondAnglePerturberAP
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AtomID_Map_T_numeric_xyzVector_T_double_T__TCAP
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DisulfideFilter
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WalkingBondAnglePerturberCAP
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AtomID_Map_bool
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DisulfideFilterAP
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WalkingPerturberAP
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AtomID_Map_boolAP
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DisulfideFilterCAP
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WalkingPerturberCAP
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AtomID_Map_boolCAP
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DisulfideFilterCreator
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EndToEndPivotsAP
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BondID
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DisulfideFilterCreatorAP
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EndToEndPivotsCAP
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BondIDAP
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DisulfideFilterCreatorCAP
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FixedOffsetPivotsAP
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BondIDCAP
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FNatFilter
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FixedOffsetPivotsCAP
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CacheableAtomID_MapVector
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FNatFilterAP
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FixedPivotsAP
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CacheableAtomID_MapVectorAP
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FNatFilterCAP
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FixedPivotsCAP
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CacheableAtomID_MapVectorCAP
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FNatFilterCreator
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LoopPivotsAP
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DOF_ID
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FNatFilterCreatorAP
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LoopPivotsCAP
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DOF_IDAP
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FNatFilterCreatorCAP
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PivotPicker
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DOF_IDCAP
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FilterScanFilter
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PivotPickerAP
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DOF_ID_Range
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FilterScanFilterAP
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PivotPickerCAP
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DOF_ID_RangeAP
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FilterScanFilterCAP
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DOF_ID_RangeCAP
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FilterScanFilterCreator
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StandardPivotsCAP
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EXCN_AtomNotFound
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FilterScanFilterCreatorAP
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FilteredSolutionsAP
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EXCN_AtomNotFoundAP
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FilterScanFilterCreatorCAP
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FilteredSolutionsCAP
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EXCN_AtomNotFoundCAP
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HbondsToAtomFilter
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RandomSolutionsAP
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JumpID
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HbondsToAtomFilterAP
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RandomSolutionsCAP
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JumpIDAP
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HbondsToAtomFilterCAP
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SolutionPicker
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JumpIDCAP
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HbondsToAtomFilterCreator
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SolutionPickerAP
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NamedAtomID
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HbondsToAtomFilterCreatorAP
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SolutionPickerCAP
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NamedAtomIDAP
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HbondsToAtomFilterCreatorCAP
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BruteFunGroupTKAP
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NamedAtomIDCAP
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HbondsToResidueFilter
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BruteFunGroupTKCAP
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NamedAtomID_Map_NamedAtomID
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HbondsToResidueFilterAP
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FunGroupTK
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NamedAtomID_Map_NamedAtomIDAP
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HbondsToResidueFilterCAP
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FunGroupTKAP
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NamedAtomID_Map_NamedAtomIDCAP
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HbondsToResidueFilterCreator
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FunGroupTKCAP
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NamedAtomID_Map_T_core_id_NamedAtomID_T
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HbondsToResidueFilterCreatorAP
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KRSQuery
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NamedAtomID_Map_T_core_id_NamedAtomID_TAP
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HbondsToResidueFilterCreatorCAP
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KRSQueryAP
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NamedAtomID_Map_T_core_id_NamedAtomID_TCAP
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IRmsdFilter
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KRSQueryCAP
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NamedStubID
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IRmsdFilterAP
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KinFunGroupTKAP
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NamedStubIDAP
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IRmsdFilterCAP
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KinFunGroupTKCAP
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NamedStubIDCAP
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IRmsdFilterCreator
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AddHydrogenAP
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SequenceMapping
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IRmsdFilterCreatorAP
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AddHydrogenCAP
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SequenceMappingAP
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IRmsdFilterCreatorCAP
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AddHydrogensAP
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SequenceMappingCAP
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InterfaceHolesFilter
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AddHydrogensCAP
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StubID
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InterfaceHolesFilterAP
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AddHydrogensCreatorAP
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StubIDAP
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InterfaceHolesFilterCAP
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AddHydrogensCreatorCAP
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StubIDCAP
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InterfaceHolesFilterCreator
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AtomCountFilterAP
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TorsionID
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InterfaceHolesFilterCreatorAP
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AtomCountFilterCAP
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TorsionIDAP
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InterfaceHolesFilterCreatorCAP
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AtomCountFilterCreatorAP
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TorsionIDCAP
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LRmsdFilter
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AtomCountFilterCreatorCAP
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TorsionID_Range
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LRmsdFilterAP
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ChainExistsFilterAP
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TorsionID_RangeAP
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LRmsdFilterCAP
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ChainExistsFilterCAP
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TorsionID_RangeCAP
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LRmsdFilterCreator
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ChainExistsFilterCreatorAP
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__CPP_CacheableAtomID_MapVector__
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LRmsdFilterCreatorAP
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ChainExistsFilterCreatorCAP
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ImportPoseOptions
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LRmsdFilterCreatorCAP
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CompleteConnectionsFilterAP
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ImportPoseOptionsAP
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RelativeSegmentFilter
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CompleteConnectionsFilterCAP
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ImportPoseOptionsCAP
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RelativeSegmentFilterAP
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CompleteConnectionsFilterCreatorAP
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ImportPoseOptionsCreator
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RelativeSegmentFilterCAP
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CompleteConnectionsFilterCreatorCAP
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ImportPoseOptionsCreatorAP
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RelativeSegmentFilterCreator
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ImportPoseOptionsCreatorCAP
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RelativeSegmentFilterCreatorAP
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CompoundTranslateCAP
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PDBSilentStruct
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RelativeSegmentFilterCreatorCAP
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PDBSilentStructAP
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RmsdFilter
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CompoundTranslateCreatorCAP
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PDBSilentStructCAP
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RmsdFilterAP
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PDBSilentStructCreator
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RmsdFilterCAP
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RmsdFilterCreator
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RmsdFilterCreatorAP
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RmsdFilterCreatorCAP
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RmsdSimpleFilter
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PoseFromPDBLoaderCreator
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FinalMinimizerCAP
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RmsdSimpleFilterCreatorCAP
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SSamountFilter
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GrowLigandCAP
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SSamountFilterAP
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GrowLigandCreatorAP
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SSamountFilterCAP
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SSamountFilterCreator
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SSamountFilterCreatorAP
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AtomTreeDiff
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SSamountFilterCreatorCAP
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AtomTreeDiffAP
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SequenceRecoveryFilter
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HBondAcceptorFilterCreatorCAP
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AtomTreeDiffCAP
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HBondDonorFilterAP
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SequenceRecoveryFilterCAP
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HBondDonorFilterCAP
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SequenceRecoveryFilterCreator
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HeavyAtomFilterCreatorAP
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MetaPoseInputStream
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HeavyAtomFilterCreatorCAP
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PoseInputStream
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RDFElecCreatorAP
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RigidBodySilentStruct
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FavorNonNativeResiduePreCycleCreatorAP
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RDFElecCreatorCAP
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RigidBodySilentStructAP
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FavorNonNativeResiduePreCycleCreatorCAP
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RDFElecFunctionAP
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RigidBodySilentStructCAP
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HotspotDisjointedFoldTreeMover
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RDFElecFunctionCAP
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RigidBodySilentStructCreator
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HotspotDisjointedFoldTreeMoverAP
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RDFEtableCreatorAP
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RigidBodySilentStructCreatorAP
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HotspotDisjointedFoldTreeMoverCAP
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RDFEtableCreatorCAP
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RigidBodySilentStructCreatorCAP
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HotspotDisjointedFoldTreeMoverCreator
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RDFEtableFunctionAP
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ScoreFileSilentStruct
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HotspotDisjointedFoldTreeMoverCreatorAP
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RDFEtableFunctionCAP
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ScoreFileSilentStructAP
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HotspotDisjointedFoldTreeMoverCreatorCAP
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RDFFunctionCreator
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ScoreFileSilentStructCAP
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HotspotHasherMover
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RDFFunctionCreatorAP
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ScoreFileSilentStructCreator
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HotspotHasherMoverAP
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RDFFunctionCreatorCAP
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ScoreFileSilentStructCreatorAP
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HotspotHasherMoverCAP
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RDFFunctionFactoryAP
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ScoreFileSilentStructCreatorCAP
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HotspotHasherMoverCreator
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RDFFunctionFactoryCAP
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ScoreJumpFileSilentStruct
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HotspotHasherMoverCreatorAP
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RDFHbondCreatorAP
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ScoreJumpFileSilentStructAP
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HotspotHasherMoverCreatorCAP
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RDFHbondCreatorCAP
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ScoreJumpFileSilentStructCAP
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InterfaceRecapitulationMover
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RDFHbondFunctionAP
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ScoreJumpFileSilentStructCreator
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InterfaceRecapitulationMoverAP
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RDFHbondFunctionCAP
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ScoreJumpFileSilentStructCreatorAP
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InterfaceRecapitulationMoverCAP
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RDFOrbitalFunctionAP
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ScoreJumpFileSilentStructCreatorCAP
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InterfaceRecapitulationMoverCreator
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RDFOrbitalFunctionCAP
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SharedSilentData
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InterfaceRecapitulationMoverCreatorAP
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RDFOrbitalFunctionCreatorAP
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SharedSilentDataAP
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InterfaceRecapitulationMoverCreatorCAP
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RDFOrbitalFunctionCreatorCAP
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SharedSilentDataCAP
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LoopFinder
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LoopBuildMoverAP
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SilentEnergy
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LoopFinderAP
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LoopBuildMoverCAP
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SilentEnergyAP
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LoopFinderCAP
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LoopMover_SlidingWindow
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SilentEnergyCAP
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LoopFinderCreator
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LoopMover_SlidingWindowAP
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SilentFileData
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LoopFinderCreatorAP
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LoopMover_SlidingWindowCAP
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SilentFileDataAP
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LoopFinderCreatorCAP
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LoopMover_SlidingWindowCreatorAP
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SilentFileDataCAP
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LoopLengthChange
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LoopMover_SlidingWindowCreatorCAP
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SilentFileLoader
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LoopLengthChangeAP
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LoopmodelWrapperAP
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SilentFileLoaderAP
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LoopLengthChangeCAP
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LoopmodelWrapperCAP
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SilentFileLoaderCAP
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LoopLengthChangeCreator
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LoopmodelWrapperCreatorAP
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SilentFileLoaderCreator
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LoopLengthChangeCreatorAP
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LoopmodelWrapperCreatorCAP
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SilentFileLoaderCreatorAP
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LoopLengthChangeCreatorCAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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SilentFileLoaderCreatorCAP
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LoopMoverFromCommandLine
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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SilentFileOptions
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LoopMoverFromCommandLineAP
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SilentFileOptionsAP
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LoopMoverFromCommandLineCAP
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LoopBuilderAP
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SilentFileOptionsCAP
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LoopMoverFromCommandLineCreator
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LoopBuilderCAP
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SilentFileOptionsCreator
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LoopMoverFromCommandLineCreatorAP
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LoopBuilderCreatorAP
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SilentFileOptionsCreatorAP
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LoopMoverFromCommandLineCreatorCAP
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LoopBuilderCreatorCAP
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SilentFileOptionsCreatorCAP
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LoopOver
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LoopModelerAP
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SilentStruct
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LoopOverAP
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LoopModelerCAP
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SilentStructAP
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LoopOverCAP
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LoopModelerCreatorAP
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SilentStructCAP
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LoopOverCreator
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LoopModelerCreatorCAP
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SilentStructCreator
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LoopOverCreatorAP
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LoopMoverAP
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SilentStructCreatorAP
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LoopOverCreatorCAP
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LoopMoverCAP
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SilentStructCreatorCAP
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LoopRemodel
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LoopProtocolAP
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SilentStructFactory
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LoopRemodelAP
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LoopProtocolCAP
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SilentStructFactoryAP
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LoopRemodelCAP
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LoopProtocolCreatorAP
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SilentStructFactoryCAP
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LoopRemodelCreator
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LoopProtocolCreatorCAP
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SimpleSequenceData
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LoopRemodelCreatorAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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SimpleSequenceDataAP
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LoopRemodelCreatorCAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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SimpleSequenceDataCAP
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MapHotspot
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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MapHotspotAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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MapHotspotCAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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MapHotspotCreator
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ToolboxKeysCAP
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SingletonBase_T_core_io_silent_SilentStructFactory_T
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MapHotspotCreatorAP
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MinimizationRefinerAP
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SingletonBase_T_core_io_silent_SilentStructFactory_TAP
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MapHotspotCreatorCAP
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MinimizationRefinerCAP
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SingletonBase_T_core_io_silent_SilentStructFactory_TCAP
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PatchdockTransform
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MinimizationRefinerCreatorAP
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__CPP_BinarySilentStructCreator__
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PatchdockTransformAP
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MinimizationRefinerCreatorCAP
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__CPP_BinarySilentStruct__
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PatchdockTransformCAP
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RepackingRefinerAP
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__CPP_ProteinSilentStructCreator__
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PatchdockTransformCreator
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RepackingRefinerCAP
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__CPP_ProteinSilentStruct_SinglePrecCreator__
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PatchdockTransformCreatorAP
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RepackingRefinerCreatorAP
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__CPP_RNA_SilentStructCreator__
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PatchdockTransformCreatorCAP
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RepackingRefinerCreatorCAP
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__CPP_RNA_SilentStruct__
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PeptideStapleDesignMover
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RotamerTrialsRefinerAP
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__CPP_RigidBodySilentStructCreator__
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PeptideStapleDesignMoverAP
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RotamerTrialsRefinerCAP
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__CPP_RigidBodySilentStruct__
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PeptideStapleDesignMoverCAP
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RotamerTrialsRefinerCreatorAP
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__CPP_ScoreFileSilentStructCreator__
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PeptideStapleDesignMoverCreator
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RotamerTrialsRefinerCreatorCAP
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__CPP_ScoreFileSilentStruct__
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PeptideStapleDesignMoverCreatorAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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__CPP_ScoreJumpFileSilentStructCreator__
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PeptideStapleDesignMoverCreatorCAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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__CPP_ScoreJumpFileSilentStruct__
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PlaceOnLoop
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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__CPP_SilentFileLoaderCreator__
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PlaceOnLoopAP
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LegacyKicSamplerAP
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__CPP_SilentFileLoader__
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PlaceOnLoopCAP
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LegacyKicSamplerCAP
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PlaceOnLoopCreator
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LegacyKicSamplerCreatorAP
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PlaceOnLoopCreatorAP
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LegacyKicSamplerCreatorCAP
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PlaceOnLoopCreatorCAP
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AcceptanceCheckAP
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__CPP_SilentStruct__
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PlaceSimultaneouslyMover
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AcceptanceCheckCAP
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AtomTree
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PlaceSimultaneouslyMoverAP
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LoopFilterAP
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AtomTreeAP
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PlaceSimultaneouslyMoverCAP
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LoopFilterCAP
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AtomTreeCAP
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PlaceSimultaneouslyMoverCreator
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LoopMoverGroupAP
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AtomWithDOFChange
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PlaceSimultaneouslyMoverCreatorAP
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LoopMoverGroupCAP
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AtomWithDOFChangeAP
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PlaceSimultaneouslyMoverCreatorCAP
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PrepareForCentroidAP
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AtomWithDOFChangeCAP
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PlaceStubMover
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PrepareForCentroidCAP
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EXCN_InvalidFoldTree
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PlaceStubMoverAP
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PrepareForCentroidCreatorAP
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EXCN_InvalidFoldTreeAP
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PlaceStubMoverCAP
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PrepareForCentroidCreatorCAP
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EXCN_InvalidFoldTreeCAP
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PlaceStubMoverCreator
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PrepareForFullatomAP
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Edge
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PlaceStubMoverCreatorAP
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PrepareForFullatomCAP
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EdgeAP
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PlaceStubMoverCreatorCAP
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PrepareForFullatomCreatorAP
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EdgeCAP
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PlacementAuctionMover
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PrepareForFullatomCreatorCAP
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FoldTree
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PlacementAuctionMoverAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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FoldTreeAP
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PlacementAuctionMoverCAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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FoldTreeCAP
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PlacementAuctionMoverCreator
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JumpAP
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PlacementAuctionMoverCreatorCAP
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JumpCAP
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BBDataCAP
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MinimizerMapBase
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PlacementMinimizationMoverAP
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PlacementMinimizationMoverCAP
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PlacementMinimizationMoverCreator
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BBExtraDataCAP
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RT
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RTAP
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PrepackMoverCAP
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RTCAP
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PrepackMoverCreator
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PrepackMoverCreatorAP
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PrepackMoverCreatorCAP
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ResidueCoordinateChangeListCAP
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ProteinInterfaceMultiStateDesignMover
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EXCN_Invalid_HashmapAP
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ShortestPathInFoldTree
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ProteinInterfaceMultiStateDesignMoverAP
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ShortestPathInFoldTreeAP
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ProteinInterfaceMultiStateDesignMoverCAP
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ShortestPathInFoldTreeCAP
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ProteinInterfaceMultiStateDesignMoverCreator
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EXCN_Wrong_DB_FormatAP
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EXCN_bbdb_Merge_FailedCAP
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RandomMutationCAP
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FastGapMoverAP
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Atom
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RandomMutationCreator
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FastGapMoverCAP
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RandomMutationCreatorAP
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AtomCAP
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RandomMutationCreatorCAP
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LeapIndexAP
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Atom_AP
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LeapIndexCAP
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Atom_CAP
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RepackMinimizeAP
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LegacyLeapIndex
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BondedAtom
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LegacyLeapIndexAP
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BondedAtomAP
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RepackMinimizeCreator
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BondedAtomCAP
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JumpAtom
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RepackMinimizeCreatorCAP
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JumpAtomAP
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SaveAndRetrieveSidechains
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LocalInserterCAP
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JumpAtomCAP
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ArmijoLineMinimization
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SaveAndRetrieveSidechainsCAP
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ArmijoLineMinimizationAP
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ArmijoLineMinimizationCAP
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AtomTreeMinimizer
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AtomTreeMinimizerAP
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AtomTreeMinimizerCAP
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AtomTreeMultifunc
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AtomTreeMultifuncAP
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AtomTreeMultifuncCAP
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SetupHotspotConstraintsLoopsMover
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LoopHashSampler
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SpinMoverCAP
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EItem
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SpinMoverCreatorCAP
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EItemAP
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EItemCAP
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TopologyBrokerMover
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TryRotamersCreator
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VLBCreatorAP
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VLBCreatorCAP
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LoopsExplicitDefinerCreatorCAP
)
__init__()
(in
__CPP_CenRotDunEnergyCreator__
)
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(in
CentroidRelaxCAP
)
__instance_size__
(in
LoopsFileDefinerAP
)
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(in
__CPP_CenRotDunEnergy__
)
__init__()
(in
ClassicRelax
)
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(in
LoopsFileDefinerCAP
)
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(in
__CPP_SingleResidueCenrotLibrary__
)
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(in
ClassicRelaxAP
)
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(in
LoopsFileDefinerCreatorAP
)
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(in
AminoAcidNeighborSparseMatrix_T_float_T
)
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(in
ClassicRelaxCAP
)
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(in
LoopsFileDefinerCreatorCAP
)
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(in
AminoAcidNeighborSparseMatrix_T_float_TAP
)
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(in
ClassicRelaxCreator
)
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(in
SingletonBase_T_protocols_loops_loops_definers_LoopsDefinerFactory_T
)
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(in
AminoAcidNeighborSparseMatrix_T_float_TCAP
)
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(in
ClassicRelaxCreatorAP
)
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(in
SingletonBase_T_protocols_loops_loops_definers_LoopsDefinerFactory_TAP
)
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(in
DensePDEdge
)
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(in
ClassicRelaxCreatorCAP
)
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(in
SingletonBase_T_protocols_loops_loops_definers_LoopsDefinerFactory_TCAP
)
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DensePDEdgeAP
)
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(in
FastRelax
)
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(in
CentroidRotNum
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DensePDEdgeCAP
)
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(in
FastRelaxAP
)
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(in
CentroidRotNumAP
)
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(in
DensePDInteractionGraph
)
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FastRelaxCAP
)
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CentroidRotNumCAP
)
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DensePDInteractionGraphAP
)
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FastRelaxCreator
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MakeRotLibJobAP
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DensePDInteractionGraphCAP
)
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FastRelaxCreatorAP
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MakeRotLibJobCAP
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DensePDNode
)
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FastRelaxCreatorCAP
)
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MakeRotLibJobInputterAP
)
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DensePDNodeAP
)
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(in
LocalRelax
)
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MakeRotLibJobInputterCAP
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DensePDNodeCAP
)
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LocalRelaxAP
)
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MakeRotLibJobInputterCreatorAP
)
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(in
DotSphere
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LocalRelaxCAP
)
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MakeRotLibJobInputterCreatorCAP
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DotSphereAP
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LocalRelaxCreator
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(in
MakeRotLibMoverAP
)
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DotSphereCAP
)
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LocalRelaxCreatorAP
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MakeRotLibMoverCAP
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DoubleDensePDEdge
)
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LocalRelaxCreatorCAP
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MakeRotLibOptionsData
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DoubleDensePDEdgeAP
)
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MiniRelax
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MakeRotLibOptionsDataAP
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DoubleDensePDEdgeCAP
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MiniRelaxAP
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MakeRotLibOptionsDataCAP
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DoubleDensePDInteractionGraph
)
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MiniRelaxCAP
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RotData
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DoubleDensePDInteractionGraphAP
)
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RelaxProtocolBase
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RotDataAP
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DoubleDensePDInteractionGraphCAP
)
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RelaxProtocolBaseAP
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RotDataCAP
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DoubleDensePDNode
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RelaxProtocolBaseCAP
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(in
TorsionRange
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DoubleDensePDNodeAP
)
__init__()
(in
RelaxScriptCommand
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TorsionRangeAP
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(in
DoubleDensePDNodeCAP
)
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RelaxScriptCommandAP
)
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(in
TorsionRangeCAP
)
__init__()
(in
DoubleLazyEdge
)
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(in
RelaxScriptCommandCAP
)
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(in
AddAllPositionsMPMAP
)
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(in
DoubleLazyEdgeAP
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
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(in
AddAllPositionsMPMCAP
)
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(in
DoubleLazyEdgeCAP
)
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(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
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(in
BfactorMPMAP
)
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DoubleLazyInteractionGraph
)
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
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(in
BfactorMPMCAP
)
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DoubleLazyInteractionGraphAP
)
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WorkUnit_BatchRelax
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(in
Bool3DGrid
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(in
DoubleLazyInteractionGraphCAP
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WorkUnit_BatchRelaxAP
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(in
Bool3DGridAP
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(in
DoubleLazyNode
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WorkUnit_BatchRelaxCAP
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(in
Bool3DGridCAP
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(in
DoubleLazyNodeAP
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WorkUnit_BatchRelax_and_PostRescore
)
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(in
Bool3DGridKinemageWriter
)
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(in
DoubleLazyNodeCAP
)
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WorkUnit_BatchRelax_and_PostRescoreAP
)
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(in
Bool3DGridKinemageWriterAP
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(in
EdgeBase
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(in
WorkUnit_BatchRelax_and_PostRescoreCAP
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(in
Bool3DGridKinemageWriterCAP
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(in
EdgeBaseAP
)
__init__()
(in
__CPP_AtomCoordinateCstMoverCreator__
)
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(in
BumpGrid
)
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(in
EdgeBaseCAP
)
__init__()
(in
__CPP_AtomCoordinateCstMover__
)
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(in
BumpGridAP
)
__init__()
(in
FASTEREdge
)
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(in
__CPP_CentroidRelax__
)
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(in
BumpGridCAP
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__init__()
(in
FASTEREdgeAP
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__init__()
(in
__CPP_ClassicRelaxCreator__
)
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(in
Hit
)
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(in
FASTEREdgeCAP
)
__init__()
(in
__CPP_ClassicRelax__
)
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(in
HitAP
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(in
FASTERInteractionGraph
)
__init__()
(in
__CPP_FastRelaxCreator__
)
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(in
HitCAP
)
__init__()
(in
FASTERInteractionGraphAP
)
__init__()
(in
__CPP_FastRelax__
)
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(in
HitHasher
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(in
FASTERInteractionGraphCAP
)
__init__()
(in
__CPP_LocalRelaxCreator__
)
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(in
HitHasherAP
)
__init__()
(in
FASTERNode
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__init__()
(in
__CPP_LocalRelax__
)
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(in
HitHasherCAP
)
__init__()
(in
FASTERNodeAP
)
__init__()
(in
__CPP_MiniRelax__
)
__instance_size__
(in
HitNeighborFinder
)
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(in
FASTERNodeCAP
)
__init__()
(in
__CPP_RelaxProtocolBase__
)
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(in
HitNeighborFinderAP
)
__init__()
(in
FixedBBEdge
)
__init__()
(in
__CPP_WorkUnit_BatchRelax__
)
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(in
HitNeighborFinderCAP
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__init__()
(in
FixedBBEdgeAP
)
__init__()
(in
__CPP_WorkUnit_BatchRelax_and_PostRescore__
)
__instance_size__
(in
MatchCounter
)
__init__()
(in
FixedBBEdgeCAP
)
__init__()
(in
MPFastRelaxMover
)
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(in
MatchCounterAP
)
__init__()
(in
FixedBBInteractionGraphAP
)
__init__()
(in
MPFastRelaxMoverAP
)
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(in
MatchCounterCAP
)
__init__()
(in
FixedBBInteractionGraphCAP
)
__init__()
(in
MPFastRelaxMoverCAP
)
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(in
MatchOutputTracker
)
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(in
FixedBBNode
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MPFastRelaxMoverCreator
)
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MatchOutputTrackerAP
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__init__()
(in
FixedBBNodeAP
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(in
MPFastRelaxMoverCreatorAP
)
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(in
MatchOutputTrackerCAP
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(in
FixedBBNodeCAP
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__init__()
(in
MPFastRelaxMoverCreatorCAP
)
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(in
MatchPositionModifier
)
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(in
HPatchEnergy
)
__init__()
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__CPP_MPFastRelaxMoverCreator__
)
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(in
MatchPositionModifierAP
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(in
HPatchEnergyAP
)
__init__()
(in
__CPP_MPFastRelaxMover__
)
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(in
MatchPositionModifierCAP
)
__init__()
(in
HPatchEnergyCAP
)
__init__()
(in
MembraneCenterPerturbationMover
)
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(in
Matcher
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HPatchEnergyCreator
)
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MembraneCenterPerturbationMoverAP
)
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(in
MatcherAP
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__init__()
(in
HPatchEnergyCreatorAP
)
__init__()
(in
MembraneCenterPerturbationMoverCAP
)
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(in
MatcherCAP
)
__init__()
(in
HPatchEnergyCreatorCAP
)
__init__()
(in
MembraneNormalPerturbationMover
)
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(in
MatcherMoverAP
)
__init__()
(in
InteractionGraphBase
)
__init__()
(in
MembraneNormalPerturbationMoverAP
)
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(in
MatcherMoverCAP
)
__init__()
(in
InteractionGraphBaseAP
)
__init__()
(in
MembraneNormalPerturbationMoverCAP
)
__instance_size__
(in
MatcherMoverCreatorAP
)
__init__()
(in
InteractionGraphBaseCAP
)
__init__()
(in
MovePoseToMembraneCenterMover
)
__instance_size__
(in
MatcherMoverCreatorCAP
)
__init__()
(in
InteractionGraphFactory
)
__init__()
(in
MovePoseToMembraneCenterMoverAP
)
__instance_size__
(in
MatcherOutputStats
)
__init__()
(in
InteractionGraphFactoryAP
)
__init__()
(in
MovePoseToMembraneCenterMoverCAP
)
__instance_size__
(in
MatcherOutputStatsAP
)
__init__()
(in
InteractionGraphFactoryCAP
)
__init__()
(in
RigidBodyDeterministicSpinMover
)
__instance_size__
(in
MatcherOutputStatsCAP
)
__init__()
(in
InvRotamerDots
)
__init__()
(in
RigidBodyDeterministicSpinMoverAP
)
__instance_size__
(in
MatcherTask
)
__init__()
(in
InvRotamerDotsAP
)
__init__()
(in
RigidBodyDeterministicSpinMoverCAP
)
__instance_size__
(in
MatcherTaskAP
)
__init__()
(in
InvRotamerDotsCAP
)
__init__()
(in
RigidBodyDofPerturbMover
)
__instance_size__
(in
MatcherTaskCAP
)
__init__()
(in
LazyEdge
)
__init__()
(in
RigidBodyDofPerturbMoverAP
)
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(in
NumNeighborsMPMAP
)
__init__()
(in
LazyEdgeAP
)
__init__()
(in
RigidBodyDofPerturbMoverCAP
)
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(in
NumNeighborsMPMCAP
)
__init__()
(in
LazyEdgeCAP
)
__init__()
(in
RigidBodyDofRandomTransMover
)
__instance_size__
(in
OccupiedSpaceHash
)
__init__()
(in
LazyInteractionGraph
)
__init__()
(in
RigidBodyDofRandomTransMoverAP
)
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(in
OccupiedSpaceHashAP
)
__init__()
(in
LazyInteractionGraphAP
)
__init__()
(in
RigidBodyDofRandomTransMoverCAP
)
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(in
OccupiedSpaceHashCAP
)
__init__()
(in
LazyInteractionGraphCAP
)
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(in
RigidBodyDofRandomizeMover
)
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(in
RemoveNorCTermMPMAP
)
__init__()
(in
LazyNode
)
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RigidBodyDofRandomizeMoverAP
)
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(in
RemoveNorCTermMPMCAP
)
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LazyNodeAP
)
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(in
RigidBodyDofRandomizeMoverCAP
)
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(in
SecondaryStructureMPMAP
)
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(in
LazyNodeCAP
)
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(in
RigidBodyDofSeqPerturbMover
)
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(in
SecondaryStructureMPMCAP
)
__init__()
(in
LinearMemEdge
)
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(in
RigidBodyDofSeqPerturbMoverAP
)
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(in
TaskOperationMPMAP
)
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(in
LinearMemEdgeAP
)
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(in
RigidBodyDofSeqPerturbMoverCAP
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(in
TaskOperationMPMCAP
)
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(in
LinearMemEdgeCAP
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RigidBodyDofSeqRandomizeMover
)
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(in
VoxelSetIterator
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(in
LinearMemNode
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RigidBodyDofSeqRandomizeMoverAP
)
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VoxelSetIteratorAP
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LinearMemNodeAP
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RigidBodyDofSeqRandomizeMoverCAP
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(in
VoxelSetIteratorCAP
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(in
LinearMemNodeCAP
)
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RigidBodyDofSeqTransMover
)
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(in
downstream_hit
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LinearMemoryInteractionGraph
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RigidBodyDofSeqTransMoverAP
)
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(in
downstream_hitAP
)
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LinearMemoryInteractionGraphAP
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RigidBodyDofSeqTransMoverCAP
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(in
downstream_hitCAP
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LinearMemoryInteractionGraphCAP
)
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RigidBodyDofTransMover
)
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(in
match_dspos1
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NodeBase
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RigidBodyDofTransMoverAP
)
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match_dspos1AP
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NodeBaseAP
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(in
RigidBodyDofTransMoverCAP
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(in
match_dspos1CAP
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(in
NodeBaseCAP
)
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(in
RigidBodyMotionMover
)
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(in
match_lite_equals
)
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(in
OnTheFlyEdge
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RigidBodyMotionMoverAP
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match_lite_equalsAP
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OnTheFlyEdgeAP
)
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RigidBodyMotionMoverCAP
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(in
match_lite_equalsCAP
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OnTheFlyEdgeCAP
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RigidBodyMover
)
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match_lite_hasher
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OnTheFlyInteractionGraphAP
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RigidBodyMoverAP
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match_lite_hasherAP
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OnTheFlyInteractionGraphCAP
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RigidBodyMoverCAP
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match_lite_hasherCAP
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OnTheFlyNode
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RigidBodyPerturbMover
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upstream_hit
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OnTheFlyNodeAP
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RigidBodyPerturbMoverAP
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upstream_hitAP
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OnTheFlyNodeCAP
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RigidBodyPerturbMoverCAP
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upstream_hitCAP
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PDEdge
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RigidBodyPerturbNoCenterMover
)
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ActiveSiteGrid
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PDEdgeAP
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RigidBodyPerturbNoCenterMoverAP
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ActiveSiteGridAP
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PDEdgeCAP
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RigidBodyPerturbNoCenterMoverCAP
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ActiveSiteGridCAP
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PDInteractionGraph
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RigidBodyPerturbNoCenterMoverCreator
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AtomAngleSecMatchRPEAP
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PDInteractionGraphAP
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RigidBodyPerturbNoCenterMoverCreatorAP
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AtomAngleSecMatchRPECAP
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PDInteractionGraphCAP
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RigidBodyPerturbNoCenterMoverCreatorCAP
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AtomDihedralSecMatchRPEAP
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PDNode
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RigidBodyPerturbRandomJumpMover
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AtomDihedralSecMatchRPECAP
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PDNodeAP
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RigidBodyPerturbRandomJumpMoverAP
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AtomDistanceSecMatchRPEAP
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PDNodeCAP
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RigidBodyPerturbRandomJumpMoverCAP
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AtomDistanceSecMatchRPECAP
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PrecomputedPairEnergiesEdge
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RigidBodyRandomizeMover
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AtomGeometrySecMatchRPEAP
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PrecomputedPairEnergiesEdgeAP
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RigidBodyRandomizeMoverAP
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AtomGeometrySecMatchRPECAP
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PrecomputedPairEnergiesEdgeCAP
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RigidBodyRandomizeMoverCAP
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ClassicMatchAlgorithmAP
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PrecomputedPairEnergiesInteractionGraphAP
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RigidBodySpinMover
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ClassicMatchAlgorithmCAP
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PrecomputedPairEnergiesInteractionGraphCAP
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RigidBodySpinMoverAP
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DownstreamAlgorithm
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PrecomputedPairEnergiesNodeAP
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RigidBodySpinMoverCAP
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DownstreamAlgorithmAP
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PrecomputedPairEnergiesNodeCAP
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RigidBodyTransMover
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DownstreamAlgorithmCAP
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RotamerDots
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RigidBodyTransMoverAP
)
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DownstreamBuilder
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RotamerDotsAP
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RigidBodyTransMoverCAP
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DownstreamBuilderAP
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RotamerDotsCAP
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RigidBodyTransMoverCreator
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DownstreamBuilderCAP
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RotamerDotsCache
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RigidBodyTransMoverCreatorAP
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GeometrySecMatchRPEAP
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RotamerDotsCacheAP
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RigidBodyTransMoverCreatorCAP
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GeometrySecMatchRPECAP
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RotamerDotsCacheCAP
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RollMover
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LigandConformerBuilderAP
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RotamerDotsRadiusData
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RollMoverAP
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LigandConformerBuilderCAP
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RotamerDotsRadiusDataAP
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RollMoverCAP
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RigidLigandBuilderAP
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RotamerDotsRadiusDataCAP
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RollMoverCreator
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RigidLigandBuilderCAP
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SimpleEdge
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RollMoverCreatorAP
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ScoringSecMatchRPEAP
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SimpleEdgeAP
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RollMoverCreatorCAP
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ScoringSecMatchRPECAP
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SimpleEdgeCAP
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RotateJumpAxisMover
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SecMatchEvaluatorFactory
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SimpleInteractionGraph
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RotateJumpAxisMoverAP
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SecMatchEvaluatorFactoryAP
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SimpleInteractionGraphAP
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RotateJumpAxisMoverCAP
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SecMatchEvaluatorFactoryCAP
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SimpleInteractionGraphCAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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SecMatchResiduePairEvaluator
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SimpleNode
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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SecMatchResiduePairEvaluatorAP
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SimpleNodeAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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SecMatchResiduePairEvaluatorCAP
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SimpleNodeCAP
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UniformRigidBodyCM
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SecondaryMatchUpstreamResProcessorAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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UniformRigidBodyCMAP
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SecondaryMatchUpstreamResProcessorCAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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UniformRigidBodyCMCAP
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SecondaryMatcherToDownstreamResidueAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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UniformRigidBodyCMCreator
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SecondaryMatcherToDownstreamResidueCAP
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SingletonBase_T_core_pack_interaction_graph_RotamerDotsRadiusData_T
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UniformRigidBodyCMCreatorAP
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SecondaryMatcherToUpstreamResidueAP
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SingletonBase_T_core_pack_interaction_graph_RotamerDotsRadiusData_TAP
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UniformRigidBodyCMCreatorCAP
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SecondaryMatcherToUpstreamResidueCAP
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SingletonBase_T_core_pack_interaction_graph_RotamerDotsRadiusData_TCAP
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UniformRigidBodyMover
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SingletonBase_T_core_chemical_ChemicalManager_T
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SingletonBase_T_core_pack_interaction_graph_SurfacePotential_T
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UniformRigidBodyMoverAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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SingletonBase_T_core_pack_interaction_graph_SurfacePotential_TAP
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UniformRigidBodyMoverCAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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SingletonBase_T_core_pack_interaction_graph_SurfacePotential_TCAP
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UniformRigidBodyMoverCreator
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TargetRotamerCoords
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SparseMatrixIndex
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UniformRigidBodyMoverCreatorAP
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TargetRotamerCoordsAP
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SparseMatrixIndexAP
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UniformRigidBodyMoverCreatorCAP
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TargetRotamerCoordsCAP
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SparseMatrixIndexCAP
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UniformSphereTransMover
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us_secmatch_hit_compare
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SurfaceEnergy
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UniformSphereTransMoverAP
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us_secmatch_hit_compareAP
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SurfaceEnergyAP
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UniformSphereTransMoverCAP
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us_secmatch_hit_compareCAP
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SurfaceEnergyCAP
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WholeBodyRotationMover
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BestMatchesCollection
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SurfaceEnergyCreator
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WholeBodyRotationMoverAP
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BestMatchesCollectionAP
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SurfaceEnergyCreatorAP
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WholeBodyRotationMoverCAP
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BestMatchesCollectionCAP
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SurfaceEnergyCreatorCAP
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WholeBodyTranslationMover
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CloudPDBWriterAP
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SurfacePotential
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WholeBodyTranslationMoverAP
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CloudPDBWriterCAP
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SurfacePotentialAP
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WholeBodyTranslationMoverCAP
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DownstreamCoordinateKinemageWriter
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SurfacePotentialCAP
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__CPP_MembraneCenterPerturbationMover__
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DownstreamCoordinateKinemageWriterAP
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SymmLinearMemEdge
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__CPP_MembraneNormalPerturbationMover__
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DownstreamCoordinateKinemageWriterCAP
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SymmLinearMemEdgeAP
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__CPP_MovePoseToMembraneCenterMover__
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DownstreamRMSEvaluatorAP
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SymmLinearMemEdgeCAP
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__CPP_RigidBodyDeterministicSpinMover__
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DownstreamRMSEvaluatorCAP
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SymmLinearMemNode
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__CPP_RigidBodyDofPerturbMover__
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LimitHitsPerRotamerFilterAP
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SymmLinearMemNodeAP
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__CPP_RigidBodyDofRandomTransMover__
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LimitHitsPerRotamerFilterCAP
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SymmLinearMemNodeCAP
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__CPP_RigidBodyDofRandomizeMover__
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MatchCollisionFilterAP
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SymmLinearMemoryInteractionGraph
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__CPP_RigidBodyDofSeqPerturbMover__
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MatchCollisionFilterCAP
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SymmLinearMemoryInteractionGraphAP
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__CPP_RigidBodyDofSeqRandomizeMover__
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MatchConsolidatorAP
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SymmLinearMemoryInteractionGraphCAP
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__CPP_RigidBodyDofSeqTransMover__
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MatchConsolidatorCAP
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SymmMinimalistEdge
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__CPP_RigidBodyDofTransMover__
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MatchEvaluator
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SymmMinimalistEdgeAP
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__CPP_RigidBodyMotionMover__
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MatchEvaluatorAP
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SymmMinimalistEdgeCAP
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__CPP_RigidBodyMover__
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MatchEvaluatorCAP
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SymmMinimalistInteractionGraph
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__CPP_RigidBodyPerturbMover__
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MatchFilter
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SymmMinimalistInteractionGraphAP
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__CPP_RigidBodyPerturbNoCenterMoverCreator__
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MatchFilterAP
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SymmMinimalistInteractionGraphCAP
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__CPP_RigidBodyPerturbNoCenterMover__
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MatchFilterCAP
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SymmMinimalistNode
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__CPP_RigidBodyPerturbRandomJumpMover__
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MatchGrouper
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SymmMinimalistNodeAP
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__CPP_RigidBodyRandomizeMover__
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MatchGrouperAP
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SymmMinimalistNodeCAP
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__CPP_RigidBodySpinMover__
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MatchGrouperCAP
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SymmOnTheFlyEdge
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__CPP_RigidBodyTransMoverCreator__
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MatchOutputterAP
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SymmOnTheFlyEdgeAP
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__CPP_RigidBodyTransMover__
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MatchOutputterCAP
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SymmOnTheFlyEdgeCAP
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__CPP_RollMoverCreator__
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MatchProcessor
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SymmOnTheFlyInteractionGraphAP
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__CPP_RollMover__
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MatchProcessorAP
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SymmOnTheFlyInteractionGraphCAP
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__CPP_RotateJumpAxisMover__
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MatchProcessorCAP
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SymmOnTheFlyNode
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__CPP_UniformRigidBodyCMCreator__
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MatchScoreWriter
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SymmOnTheFlyNodeAP
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__CPP_UniformRigidBodyCM__
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MatchScoreWriterAP
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SymmOnTheFlyNodeCAP
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__CPP_UniformRigidBodyMoverCreator__
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MatchScoreWriterCAP
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__CPP_DensePDEdge__
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__CPP_UniformRigidBodyMover__
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OutputWriter
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__CPP_DoubleDensePDEdge__
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__CPP_UniformSphereTransMover__
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OutputWriterAP
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__CPP_DoubleLazyEdge__
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__CPP_WholeBodyRotationMover__
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OutputWriterCAP
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__CPP_DoubleLazyNode__
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__CPP_WholeBodyTranslationMover__
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PDBWriterAP
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__CPP_EdgeBase__
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AdditionalOutputWrapper
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PDBWriterCAP
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__CPP_FASTEREdge__
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AdditionalOutputWrapperAP
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PoseInserterAP
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__CPP_FixedBBEdge__
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AdditionalOutputWrapperCAP
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PoseInserterCAP
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__CPP_HPatchEnergyCreator__
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AdditionalOutputWrapperCreator
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PoseMatchOutputWriterAP
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__CPP_HPatchEnergy__
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AdditionalOutputWrapperCreatorAP
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PoseMatchOutputWriterCAP
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__CPP_LazyEdge__
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AdditionalOutputWrapperCreatorCAP
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ProcessorFactory
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__CPP_LazyNode__
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MultipleOutputWrapper
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ProcessorFactoryAP
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__CPP_LinearMemEdge__
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MultipleOutputWrapperAP
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ProcessorFactoryCAP
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__CPP_LinearMemNode__
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MultipleOutputWrapperCAP
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ResidueKinemageWriter
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__CPP_NodeBase__
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MultipleOutputWrapperCreator
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ResidueKinemageWriterAP
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__CPP_OnTheFlyEdge__
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MultipleOutputWrapperCreatorAP
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ResidueKinemageWriterCAP
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__CPP_PDEdge__
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MultipleOutputWrapperCreatorCAP
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SameChiBinComboGrouperAP
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__CPP_PrecomputedPairEnergiesEdge__
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MultiplePoseMover
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SameChiBinComboGrouperCAP
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__CPP_SimpleEdge__
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MultiplePoseMoverAP
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SameRotamerComboGrouperAP
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__CPP_SimpleInteractionGraph__
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MultiplePoseMoverCAP
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SameRotamerComboGrouperCAP
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__CPP_SimpleNode__
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MultiplePoseMoverCreator
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SameSequenceAndDSPositionGrouperAP
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__CPP_SurfaceEnergyCreator__
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MultiplePoseMoverCreatorAP
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SameSequenceAndDSPositionGrouperCAP
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__CPP_SurfaceEnergy__
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MultiplePoseMoverCreatorCAP
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SameSequenceGrouperAP
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__CPP_SymmLinearMemEdge__
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ParsedProtocol
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SameSequenceGrouperCAP
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__CPP_SymmLinearMemNode__
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ParsedProtocolAP
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SingleDownstreamResidueWriterAP
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__CPP_SymmMinimalistEdge__
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ParsedProtocolCAP
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SingleDownstreamResidueWriterCAP
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__CPP_SymmMinimalistNode__
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ParsedProtocolCreator
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SingletonBase_T_core_chemical_ChemicalManager_T
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__CPP_SymmOnTheFlyEdge__
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ParsedProtocolCreatorAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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exposed_hydrophobic_data
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ParsedProtocolCreatorCAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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exposed_hydrophobic_dataAP
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PosePropertyReporter
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StateAccumulatingMatchFilterAP
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exposed_hydrophobic_dataCAP
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PosePropertyReporterAP
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StateAccumulatingMatchFilterCAP
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history_queue_struct
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PosePropertyReporterCAP
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UpstreamCollisionFilterAP
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history_queue_structAP
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PosePropertyReporterCreator
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history_queue_structCAP
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PosePropertyReporterCreatorAP
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UpstreamDownstreamCollisionFilterAP
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AddResiduesRotamerSetOperation
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PosePropertyReporterCreatorCAP
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UpstreamDownstreamCollisionFilterCAP
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AddResiduesRotamerSetOperationAP
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PosePropertyReporterFactory
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UpstreamHitCacherAP
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AddResiduesRotamerSetOperationCAP
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PosePropertyReporterFactoryAP
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UpstreamHitCacherCAP
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BumpSelector
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PosePropertyReporterFactoryCAP
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WriteKinemageOutputterAP
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BumpSelectorAP
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PoseSelector
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WriteKinemageOutputterCAP
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BumpSelectorCAP
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PoseSelectorAP
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WriteUpstreamCoordinateKinemageAP
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ContinuousRotamerSet
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PoseSelectorCAP
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WriteUpstreamCoordinateKinemageCAP
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PoseSelectorCreator
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WriteUpstreamHitKinemageAP
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ContinuousRotamerSetCAP
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PoseSelectorCreatorAP
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WriteUpstreamHitKinemageCAP
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PoseSelectorCreatorCAP
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PoseSelectorFactory
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PoseSelectorFactoryAP
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BuildSetCAP
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PoseSelectorFactoryCAP
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DunbrackSCSamplerAP
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FixbbRotamerSetsAP
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RosettaScriptsParser
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DunbrackSCSamplerCAP
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FixbbRotamerSetsCAP
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RosettaScriptsParserAP
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FullChiSampleSet
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RotamerCouplings
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RosettaScriptsParserCAP
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FullChiSampleSetAP
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RotamerCouplingsAP
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SavePoseMover
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FullChiSampleSetCAP
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RotamerCouplingsCAP
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SavePoseMoverAP
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OriginalBackboneBuildPoint
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RotamerLinks
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SavePoseMoverCAP
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OriginalBackboneBuildPointAP
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RotamerLinksAP
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SavePoseMoverCreator
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OriginalBackboneBuildPointCAP
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RotamerLinksCAP
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SavePoseMoverCreatorAP
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ProteinBackboneBuildPointAP
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RotamerOperation
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SavePoseMoverCreatorCAP
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ProteinBackboneBuildPointCAP
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RotamerOperationAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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ProteinSCSampler
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RotamerOperationCAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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ProteinSCSamplerAP
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RotamerSet
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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ProteinSCSamplerCAP
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RotamerSetAP
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SingletonBase_T_protocols_rosetta_scripts_PoseSelectorFactory_T
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ProteinUpstreamBuilderAP
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RotamerSetCAP
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SingletonBase_T_protocols_rosetta_scripts_PoseSelectorFactory_TAP
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ProteinUpstreamBuilderCAP
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RotamerSetFactory
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SingletonBase_T_protocols_rosetta_scripts_PoseSelectorFactory_TCAP
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SampleStrategyData
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RotamerSetFactoryAP
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__CPP_AdditionalOutputWrapperCreator__
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SampleStrategyDataAP
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RotamerSetFactoryCAP
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SampleStrategyDataCAP
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RotamerSetOperation
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RotamerSetOperationAP
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RotamerSetOperationCAP
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RotamerSet_
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RotamerSet_AP
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RotamerSet_CAP
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RotamerSetsAP
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RotamerSetsBase
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RotamerSetsBaseAP
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UpstreamResidueProcessor
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RotamerSetsBaseCAP
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UpstreamResidueProcessorAP
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RotamerSetsCAP
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UpstreamResidueProcessorCAP
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RotamerSubset
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BuildingBlockInterfaceOperationAP
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RotamerSubsetAP
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RotamerSubsetCAP
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RRComparer
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RotamerSubsets
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RRComparerAP
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RotamerSubsetsAP
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RRComparerAutomorphicRMSD
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ClashCheckFilterAP
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RotamerSubsetsCAP
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RRComparerAutomorphicRMSDAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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RRComparerAutomorphicRMSDCAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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RRComparerAutomorphicRMSDCreator
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ClashCheckFilterCreatorCAP
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RRComparerAutomorphicRMSDCreatorAP
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UnboundRotamersOperation
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RRComparerAutomorphicRMSDCreatorCAP
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ExtractSubposeMoverCAP
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UnboundRotamersOperationAP
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RRComparerCAP
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ExtractSubposeMoverCreatorAP
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UnboundRotamersOperationCAP
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RRComparerChiDiff
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ExtractSubposeMoverCreatorCAP
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WaterAnchorInfo
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RRComparerChiDiffAP
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GetRBDOFValuesAP
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WaterAnchorInfoAP
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RRComparerChiDiffCAP
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GetRBDOFValuesCAP
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WaterAnchorInfoCAP
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RRComparerChiDiffCreator
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GetRBDOFValuesCreatorAP
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WaterPackingInfo
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RRComparerChiDiffCreatorAP
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GetRBDOFValuesCreatorCAP
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WaterPackingInfoAP
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RRComparerChiDiffCreatorCAP
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InterfacePackingFilterAP
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WaterPackingInfoCAP
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RRComparerCreator
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InterfacePackingFilterCAP
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RRComparerCreatorAP
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InterfacePackingFilterCreatorAP
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RRComparerCreatorCAP
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InterfacePackingFilterCreatorCAP
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RRComparerElecDensDiff
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MatDesGreedyOptMutationMoverAP
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RRComparerElecDensDiffAP
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MatDesGreedyOptMutationMoverCAP
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RRComparerElecDensDiffCAP
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MatDesGreedyOptMutationMoverCreatorAP
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RRComparerElecDensDiffCreator
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MatDesGreedyOptMutationMoverCreatorCAP
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RRComparerElecDensDiffCreatorAP
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MatDesPointMutationCalculator
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RRComparerElecDensDiffCreatorCAP
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MatDesPointMutationCalculatorAP
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RRComparerRotBins
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MatDesPointMutationCalculatorCAP
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RRComparerRotBinsAP
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OligomericAverageDegreeFilterAP
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RRComparerRotBinsCAP
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RRComparerRotBinsCreator
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SymmetricRotamerSetFactory
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RRComparerRotBinsCreatorAP
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RRComparerRotBinsCreatorCAP
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SchemePlaceMotifsMoverAP
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SymmetricRotamerSetFactoryCAP
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RRProtocol
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SchemePlaceMotifsMoverCAP
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SymmetricRotamerSet_
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RRProtocolAP
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SchemePlaceMotifsMoverCreatorAP
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SymmetricRotamerSet_AP
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RRProtocolCAP
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SchemePlaceMotifsMoverCreatorCAP
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RRProtocolCreator
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SingletonBase_T_core_chemical_ChemicalManager_T
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RRProtocolCreatorAP
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RRProtocolCreatorCAP
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RRProtocolMinPack
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RRProtocolMinPackAP
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SingletonBase_T_protocols_matdes_SymDofMoverSampler_TAP
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AtomTreeCollection
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RRProtocolMinPackCAP
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AtomTreeCollectionAP
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RRProtocolMinPackCreator
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SymDofMoverAP
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AtomTreeCollectionCAP
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RRProtocolMinPackCreatorAP
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SymDofMoverCAP
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CartSCMinMultifuncAP
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RRProtocolMinPackCreatorCAP
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SymDofMoverCreatorAP
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CartSCMinMultifuncCAP
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RRProtocolMover
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SymDofMoverCreatorCAP
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ResidueAtomTreeCollectionMomento
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RRProtocolMoverAP
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SymDofMoverSamplerAP
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ResidueAtomTreeCollectionMomentoAP
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RRProtocolMoverCAP
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SymDofMoverSamplerCAP
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ResidueAtomTreeCollectionMomentoCAP
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RRProtocolMoverCreator
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ALLAA
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RRProtocolMoverCreatorAP
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RRProtocolMoverCreatorCAP
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ALLAACAP
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RRProtocolPackRotamers
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SymUnsatHbondFilterCreatorCAP
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ALLAAwc
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RRProtocolPackRotamersAP
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CartesianMDAP
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ALLAAwcAP
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RRProtocolPackRotamersCAP
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CartesianMDCAP
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ALLAAwcCAP
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RRProtocolPackRotamersCreator
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CartesianMDCreatorAP
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ALLAAxc
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RRProtocolPackRotamersCreatorAP
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CartesianMDCreatorCAP
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RRProtocolPackRotamersCreatorCAP
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Constraint
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ALLAAxcCAP
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RRProtocolRTMin
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ConstraintAP
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APOLA
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RRProtocolRTMinAP
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ConstraintCAP
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APOLAAP
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RRProtocolRTMinCAP
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MDBaseAP
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APOLACAP
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RRProtocolRTMinCreator
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MDBaseCAP
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APOLAR
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RRProtocolRTMinCreatorAP
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MDscheduleData
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APOLARAP
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RRProtocolRTMinCreatorCAP
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MDscheduleDataAP
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APOLARCAP
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RRProtocolReferenceStructure
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MDscheduleDataCAP
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RRProtocolReferenceStructureAP
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RRProtocolReferenceStructureCAP
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RattleAP
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RRProtocolReferenceStructureCreator
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RattleCAP
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RRProtocolReferenceStructureCreatorAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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RRProtocolReferenceStructureCreatorCAP
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RRProtocolRelax
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RRProtocolRelaxAP
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EXAP
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RRProtocolRelaxCAP
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EXCAP
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RRProtocolRelaxCreator
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RRProtocolRelaxCreatorAP
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EX_CUTOFFAP
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RRProtocolRelaxCreatorCAP
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EX_CUTOFFCAP
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RRProtocolRotamerTrials
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FIX_HIS_TAUTOMER
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RRProtocolRotamerTrialsAP
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FIX_HIS_TAUTOMERAP
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RRProtocolRotamerTrialsCAP
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AddMPLigandMoverAP
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FIX_HIS_TAUTOMERCAP
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RRProtocolRotamerTrialsCreator
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IGEdgeReweightContainer
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RRProtocolRotamerTrialsCreatorAP
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AddMPLigandMoverCreatorAP
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IGEdgeReweightContainerAP
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RRProtocolRotamerTrialsCreatorCAP
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AddMPLigandMoverCreatorCAP
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IGEdgeReweightContainerCAP
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RRReporter
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IGEdgeReweighter
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RRReporterAP
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RRReporterCAP
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RRReporterCreator
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RRReporterCreatorAP
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RRReporterCreatorCAP
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RRReporterHuman
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RRReporterHumanCAP
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RRReporterHumanCreator
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RRReporterSQLite
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RRReporterSQLiteCAP
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RRReporterSQLiteCreator
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RotationMoverCreatorAP
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RotationMoverCreatorCAP
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PackerTask
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RotamerRecoveryMoverAP
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PackerTaskAP
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RotamerRecoveryMoverCAP
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BuriedPolarScoreCAP
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TopEntitySetCAP
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__CPP_RestrictToRepackingRLT__
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CBScore
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VMax
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__CPP_RestrictToRepacking__
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CBScoreAP
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VMaxAP
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__CPP_RestrictYSDesignCreator__
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CBScoreCAP
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VMaxBy
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__CPP_RestrictYSDesign__
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ConstraintSetScore
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VMaxByAP
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__CPP_RotamerExplosionCreator__
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ConstraintSetScoreAP
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VMaxByCAP
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__CPP_RotamerExplosion__
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ConstraintSetScoreCAP
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VMaxCAP
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__CPP_SetRotamerCouplingsCreator__
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EdgeStandScore
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VMin
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__CPP_SetRotamerCouplings__
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EdgeStandScoreAP
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VMinAP
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__CPP_SetRotamerLinksCreator__
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EdgeStandScoreCAP
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VMinBy
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__CPP_SetRotamerLinks__
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HelixScore
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VMinByAP
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__CPP_TaskOperationCreator__
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HelixScoreAP
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VMinByCAP
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__CPP_TaskOperation__
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HelixScoreCAP
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VMinCAP
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AndResidueSelector
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JointScore
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VariableVectorExpressionAP
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AndResidueSelectorAP
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JointScoreAP
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VariableVectorExpressionCAP
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AndResidueSelectorCAP
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JointScoreCAP
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VectorExpressionAP
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AndResidueSelectorCreator
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LinkerScore
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VectorExpressionCAP
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AndResidueSelectorCreatorAP
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LinkerScoreAP
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VectorExpressionCreatorAP
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AndResidueSelectorCreatorCAP
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LinkerScoreCAP
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VectorExpressionCreatorCAP
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ChainSelector
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RigidScore
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VectorFunction2AP
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ChainSelectorAP
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RigidScoreAP
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VectorFunction2CAP
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ChainSelectorCAP
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RigidScoreCAP
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VectorFunctionAP
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ChainSelectorCreator
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Rose
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VectorFunctionCAP
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ChainSelectorCreatorAP
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RoseAP
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SetupPoissonBoltzmannPotentialAP
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ChainSelectorCreatorCAP
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RoseCAP
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SetupPoissonBoltzmannPotentialCAP
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ClashBasedRepackShellSelector
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SICFast
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SetupPoissonBoltzmannPotentialCreatorAP
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ClashBasedRepackShellSelectorAP
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SICFastAP
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SetupPoissonBoltzmannPotentialCreatorCAP
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ClashBasedRepackShellSelectorCAP
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SICFastCAP
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AlterSpecDisruptionDriverAP
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ClashBasedRepackShellSelectorCreator
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SingletonBase_T_core_chemical_ChemicalManager_T
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AlterSpecDisruptionDriverCAP
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ClashBasedRepackShellSelectorCreatorAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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Mutant
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ClashBasedRepackShellSelectorCreatorCAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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MutantAP
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InterGroupInterfaceByVectorSelector
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Vec3
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MutantCAP
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InterGroupInterfaceByVectorSelectorAP
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Vec3AP
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MutationData
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InterGroupInterfaceByVectorSelectorCAP
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Vec3CAP
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MutationDataAP
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InterGroupInterfaceByVectorSelectorCreator
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XfoxmScore
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MutationDataCAP
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InterGroupInterfaceByVectorSelectorCreatorAP
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XfoxmScoreAP
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PointMutScanDriver
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InterGroupInterfaceByVectorSelectorCreatorCAP
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XfoxmScoreCAP
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PointMutScanDriverAP
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JumpDownstreamSelector
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__CPP_CBScore__
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PointMutScanDriverCAP
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JumpDownstreamSelectorAP
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__CPP_ConstraintSetScore__
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CCluster
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JumpDownstreamSelectorCAP
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__CPP_JointScore__
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CClusterAP
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JumpDownstreamSelectorCreator
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__CPP_LinkerScore__
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CClusterCAP
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JumpDownstreamSelectorCreatorAP
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__CPP_RigidScore__
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CClusterSet
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JumpDownstreamSelectorCreatorCAP
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xyzStripeHashPoseWithMeta
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CClusterSetAP
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JumpUpstreamSelector
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xyzStripeHashPoseWithMetaAP
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CClusterSetCAP
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JumpUpstreamSelectorAP
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xyzStripeHashPoseWithMetaCAP
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ComparisonGrid
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JumpUpstreamSelectorCAP
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MotifHashRigidScore
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ComparisonGridAP
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JumpUpstreamSelectorCreator
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MotifHashRigidScoreAP
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ComparisonGridCAP
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JumpUpstreamSelectorCreatorAP
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MotifHashRigidScoreCAP
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DarcParticleSwarmMinimizerAP
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JumpUpstreamSelectorCreatorCAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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DarcParticleSwarmMinimizerCAP
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NeighborhoodResidueSelector
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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EggshellGridAP
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NeighborhoodResidueSelectorAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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EggshellGridCAP
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NeighborhoodResidueSelectorCAP
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TrisBpyScore
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ElectrostaticpotentialGridAP
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NeighborhoodResidueSelectorCreator
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TrisBpyScoreAP
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ElectrostaticpotentialGridCAP
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NeighborhoodResidueSelectorCreatorAP
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TrisBpyScoreCAP
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FingerprintBase
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NeighborhoodResidueSelectorCreatorCAP
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__CPP_MotifHashRigidScore__
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FingerprintBaseAP
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NotResidueSelector
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__CPP_TrisBpyScore__
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FingerprintBaseCAP
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NotResidueSelectorAP
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AbinitioBaseFilter
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FingerprintMultifunc
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NotResidueSelectorCAP
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AbinitioBaseFilterAP
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FingerprintMultifuncAP
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NotResidueSelectorCreator
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AbinitioBaseFilterCAP
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FingerprintMultifuncCAP
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NotResidueSelectorCreatorAP
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AlaScan
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GenPharmacophore
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NotResidueSelectorCreatorCAP
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AlaScanAP
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GenPharmacophoreAP
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NumNeighborsSelector
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AlaScanCAP
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GenPharmacophoreCAP
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NumNeighborsSelectorAP
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AlaScanFilterCreator
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NonPlaidFingerprintAP
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NumNeighborsSelectorCAP
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AlaScanFilterCreatorAP
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NonPlaidFingerprintCAP
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NumNeighborsSelectorCreator
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AlaScanFilterCreatorCAP
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PCluster
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NumNeighborsSelectorCreatorAP
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AngleToVector
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PClusterAP
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NumNeighborsSelectorCreatorCAP
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AngleToVectorAP
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PClusterCAP
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OrResidueSelector
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AngleToVectorCAP
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PClusterSet
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OrResidueSelectorAP
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AngleToVectorFilterCreator
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PClusterSetAP
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OrResidueSelectorCAP
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AngleToVectorFilterCreatorAP
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PClusterSetCAP
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OrResidueSelectorCreator
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AngleToVectorFilterCreatorCAP
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PlaidFingerprintAP
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OrResidueSelectorCreatorAP
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AtomicContactFilter
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PlaidFingerprintCAP
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OrResidueSelectorCreatorCAP
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AtomicContactFilterAP
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PocketConstraintAP
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ResidueIndexSelector
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AtomicContactFilterCAP
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PocketConstraintCAP
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ResidueIndexSelectorAP
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AtomicContactFilterCreator
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PocketConstraintCreatorAP
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ResidueIndexSelectorCAP
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AtomicContactFilterCreatorAP
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PocketConstraintCreatorCAP
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ResidueIndexSelectorCreator
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AtomicContactFilterCreatorCAP
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PocketExemplarMultifunc
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ResidueIndexSelectorCreatorAP
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AtomicDistanceFilter
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PocketExemplarMultifuncAP
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ResidueIndexSelectorCreatorCAP
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AtomicDistanceFilterAP
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PocketExemplarMultifuncCAP
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ResidueNameSelector
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AtomicDistanceFilterCAP
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PocketGrid
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ResidueNameSelectorAP
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AtomicDistanceFilterCreator
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PocketGridAP
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ResidueNameSelectorCAP
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AtomicDistanceFilterCreatorAP
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PocketGridCAP
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ResidueNameSelectorCreator
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AtomicDistanceFilterCreatorCAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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ResidueNameSelectorCreatorAP
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AveragePathLengthFilter
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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ResidueNameSelectorCreatorCAP
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AveragePathLengthFilterAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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ResidueSelector
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AveragePathLengthFilterCAP
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ResidueSelectorAP
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AveragePathLengthFilterCreator
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ResidueSelectorCAP
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AveragePathLengthFilterCreatorAP
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ResidueSelectorCreator
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AveragePathLengthFilterCreatorCAP
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TargetPocketGridAP
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ResidueSelectorCreatorAP
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BatchEvaluator
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TargetPocketGridCAP
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ResidueSelectorCreatorCAP
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BatchEvaluatorAP
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UnionEdge
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ResidueSelectorFactory
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BatchEvaluatorCAP
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UnionEdgeAP
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ResidueSelectorFactoryAP
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BatchNrEvaluator
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UnionEdgeCAP
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ResidueSelectorFactoryCAP
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BatchNrEvaluatorAP
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ray_distance_derivs
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SecondaryStructureSelector
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BatchNrEvaluatorCAP
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ray_distance_derivsAP
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SecondaryStructureSelectorAP
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BuriedUnsatHbondFilter
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ray_distance_derivsCAP
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SecondaryStructureSelectorCAP
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BuriedUnsatHbondFilterAP
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spherical_coor_triplet
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SecondaryStructureSelectorCreator
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BuriedUnsatHbondFilterCAP
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spherical_coor_tripletAP
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SecondaryStructureSelectorCreatorAP
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BuriedUnsatHbondFilterCreator
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spherical_coor_tripletCAP
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SecondaryStructureSelectorCreatorCAP
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BuriedUnsatHbondFilterCreatorAP
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triplet_and_originnum
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SingletonBase_T_core_chemical_ChemicalManager_T
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BuriedUnsatHbondFilterCreatorCAP
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triplet_and_originnumAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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COFilter
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triplet_and_originnumCAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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COFilterAP
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EnergyReporterAP
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TrueResidueSelector
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COFilterCAP
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EnergyReporterCAP
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TrueResidueSelectorAP
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CamShiftEvaluator
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LogicalSelectorAP
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TrueResidueSelectorCAP
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CamShiftEvaluatorAP
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LogicalSelectorCAP
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TrueResidueSelectorCreator
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CamShiftEvaluatorCAP
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DockDesignFilterFactory
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TrueResidueSelectorCreatorAP
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CamShiftEvaluatorCreator
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DockDesignFilterFactoryAP
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TrueResidueSelectorCreatorCAP
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CamShiftEvaluatorCreatorAP
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DockDesignFilterFactoryCAP
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CamShiftEvaluatorCreatorCAP
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FavorNativeResidue
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__CPP_AndResidueSelector__
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ChiWellRmsdEvaluator
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FavorNativeResidueAP
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__CPP_ChainSelectorCreator__
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ChiWellRmsdEvaluatorAP
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FavorNativeResidueCAP
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ChiWellRmsdEvaluatorCAP
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FavorNonNativeResidue
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ChiWellRmsdEvaluatorCreator
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FavorNonNativeResidueAP
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ChiWellRmsdEvaluatorCreatorAP
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FavorNonNativeResidueCAP
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ChiWellRmsdEvaluatorCreatorCAP
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ParserJobInputterAP
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ConservedPosMutationFilter
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ParserJobInputterCAP
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ConservedPosMutationFilterAP
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ParserJobInputterCreatorAP
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ParserJobInputterCreatorCAP
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ConservedPosMutationFilterCreator
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PatchdockReader
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PatchdockReaderAP
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__CPP_NeighborhoodResidueSelectorCreator__
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ConservedPosMutationFilterCreatorCAP
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PatchdockReaderCAP
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__CPP_NeighborhoodResidueSelector__
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ConstraintScoreCutoffFilter
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ReportPSSMDifferences
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__CPP_NotResidueSelectorCreator__
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ConstraintScoreCutoffFilterAP
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ConstraintScoreCutoffFilterCAP
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ReportPSSMDifferencesCAP
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__CPP_NumNeighborsSelectorCreator__
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ConstraintScoreCutoffFilterCreator
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ReportSequenceDifferences
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LREnergyContainerCAP
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RelativePoseFilterCreator
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SpinMoverAP
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MembraneEmbed
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RelativePoseFilterCreatorAP
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SpinMoverCAP
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MembraneEmbedAP
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RelativePoseFilterCreatorCAP
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SpinMoverCreatorAP
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MembraneEmbedCAP
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RepeatParameterFilter
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SpinMoverCreatorCAP
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MembranePotential
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RepeatParameterFilterAP
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MembranePotentialAP
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RepeatParameterFilterCAP
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MembranePotentialCAP
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RepeatParameterFilterCreator
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SubroutineMoverCreatorAP
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MembraneTopology
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RepeatParameterFilterCreatorAP
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MembraneTopologyAP
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RepeatParameterFilterCreatorCAP
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MembraneTopologyCAP
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ReportFilter
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TaskAwareCstsCAP
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Membrane_FAEmbed
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ReportFilterAP
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Membrane_FAEmbedAP
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ReportFilterCAP
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TaskAwareCstsCreatorCAP
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Membrane_FAEmbedCAP
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ReportFilterCreator
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TopologyBrokerMoverAP
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Membrane_FAPotential
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ReportFilterCreatorAP
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TopologyBrokerMoverCAP
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Membrane_FAPotentialAP
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ReportFilterCreatorCAP
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TopologyBrokerMoverCreatorAP
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Membrane_FAPotentialCAP
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ResidueBurialFilter
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TopologyBrokerMoverCreatorCAP
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MinScoreScoreFunction
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ResidueBurialFilterAP
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TryRotamersAP
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MinScoreScoreFunctionAP
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ResidueBurialFilterCAP
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TryRotamersCAP
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MinScoreScoreFunctionCAP
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ResidueBurialFilterCreator
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TryRotamersCreatorAP
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MinimizationEdge
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ResidueBurialFilterCreatorAP
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TryRotamersCreatorCAP
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MinimizationEdgeAP
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ResidueBurialFilterCreatorCAP
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VLBAP
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MinimizationEdgeCAP
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ResidueCountFilter
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VLBCAP
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MinimizationGraph
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ResidueCountFilterAP
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VLBCreatorAP
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MinimizationGraphAP
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ResidueCountFilterCAP
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VLBCreatorCAP
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MinimizationGraphCAP
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ResidueCountFilterCreator
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AutoRBMoverAP
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MinimizationNode
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ResidueCountFilterCreatorAP
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AutoRBMoverCAP
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MinimizationNodeAP
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ResidueCountFilterCreatorCAP
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FragInsertAndAlignMoverAP
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MinimizationNodeCAP
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ResidueDistanceFilter
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FragInsertAndAlignMoverCAP
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NeighborList
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ResidueDistanceFilterAP
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GaussianRBSegmentMoverAP
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NeighborListAP
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ResidueDistanceFilterCAP
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GaussianRBSegmentMoverCAP
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NeighborListCAP
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ResidueDistanceFilterCreator
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HelicalGaussianMoverAP
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OmegaTether
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ResidueDistanceFilterCreatorAP
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HelicalGaussianMoverCAP
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OmegaTetherAP
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ResidueDistanceFilterCreatorCAP
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IdealizeHelicesMoverAP
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OmegaTetherCAP
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ResidueIEFilter
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IdealizeHelicesMoverCAP
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OneToAllEnergyContainer
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ResidueIEFilterAP
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IdealizeHelicesMoverCreatorAP
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OneToAllEnergyContainerAP
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ResidueIEFilterCAP
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IdealizeHelicesMoverCreatorCAP
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OneToAllEnergyContainerCAP
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ResidueIEFilterCreator
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MakeStarTopologyMoverAP
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OneToAllNeighborConstIterator
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ResidueIEFilterCreatorAP
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MakeStarTopologyMoverCAP
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OneToAllNeighborConstIteratorAP
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ResidueIEFilterCreatorCAP
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MakeStarTopologyMoverCreatorAP
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OneToAllNeighborConstIteratorCAP
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ResidueSetChainEnergyFilter
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MakeStarTopologyMoverCreatorCAP
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OneToAllNeighborIterator
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ResidueSetChainEnergyFilterAP
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OptimizeThreadingMoverAP
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OneToAllNeighborIteratorAP
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ResidueSetChainEnergyFilterCAP
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OptimizeThreadingMoverCAP
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OneToAllNeighborIteratorCAP
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ResidueSetChainEnergyFilterCreator
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OptimizeThreadingMoverCreatorAP
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PQR
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ResidueSetChainEnergyFilterCreatorAP
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OptimizeThreadingMoverCreatorCAP
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PQRAP
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ResidueSetChainEnergyFilterCreatorCAP
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RBResidueRange
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PQRCAP
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ResiduesInInterfaceFilter
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RBResidueRangeAP
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P_AA
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ResiduesInInterfaceFilterAP
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RBResidueRangeCAP
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P_AAAP
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ResiduesInInterfaceFilterCAP
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RBSegment
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P_AACAP
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ResiduesInInterfaceFilterCreator
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RBSegmentAP
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PairEPotential
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ResiduesInInterfaceFilterCreatorAP
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RBSegmentCAP
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PairEPotentialAP
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ResiduesInInterfaceFilterCreatorCAP
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RBSegmentMoverAP
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PairEPotentialCAP
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RmsdEvaluator
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RBSegmentMoverCAP
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PeptideBondedEnergyContainer
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RmsdEvaluatorAP
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RBSegmentRelaxAP
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PeptideBondedEnergyContainerAP
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RmsdEvaluatorCAP
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RBSegmentRelaxCAP
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PeptideBondedEnergyContainerCAP
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RmsdEvaluatorCreator
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RB_lt
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PeptideBondedNeighborConstIterator
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RmsdEvaluatorCreatorAP
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RB_ltAP
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PeptideBondedNeighborConstIteratorAP
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RmsdEvaluatorCreatorCAP
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RB_ltCAP
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PeptideBondedNeighborConstIteratorCAP
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RmsdTargetEvaluatorCreator
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SequenceShiftMoverAP
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PeptideBondedNeighborIterator
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RmsdTargetEvaluatorCreatorAP
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SequenceShiftMoverCAP
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PeptideBondedNeighborIteratorAP
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RmsdTargetEvaluatorCreatorCAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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PeptideBondedNeighborIteratorCAP
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RotamerBoltzmannWeight
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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PoissonBoltzmannPotential
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RotamerBoltzmannWeightAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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PoissonBoltzmannPotentialAP
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RotamerBoltzmannWeightCAP
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StrandTwistingMoverAP
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PoissonBoltzmannPotentialCAP
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RotamerBoltzmannWeightFilterCreator
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StrandTwistingMoverCAP
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Predicate
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RotamerBoltzmannWeightFilterCreatorAP
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AtomCoordinateCstMoverAP
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PredicateAP
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RotamerBoltzmannWeightFilterCreatorCAP
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AtomCoordinateCstMoverCAP
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PredicateCAP
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SAXSScoreFilter
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AtomCoordinateCstMoverCreatorAP
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ProQPotential
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SAXSScoreFilterAP
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AtomCoordinateCstMoverCreatorCAP
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ProQPotentialAP
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SAXSScoreFilterCAP
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CentroidRelaxAP
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ProQPotentialCAP
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SSMotifFinder
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CentroidRelaxCAP
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RDC
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SSMotifFinderAP
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ClassicRelaxAP
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RDCAP
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SSMotifFinderCAP
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ClassicRelaxCAP
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RDCCAP
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SSMotifFinderFilterCreator
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ClassicRelaxCreatorAP
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RDC_Rohl
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SSMotifFinderFilterCreatorAP
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ClassicRelaxCreatorCAP
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RDC_RohlAP
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SSMotifFinderFilterCreatorCAP
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FastRelaxAP
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RDC_RohlCAP
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SavePoseConstraintToFileFilter
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FastRelaxCAP
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Rama2BOffset
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SavePoseConstraintToFileFilterAP
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FastRelaxCreatorAP
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Rama2BOffsetAP
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SavePoseConstraintToFileFilterCAP
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FastRelaxCreatorCAP
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Rama2BOffsetCAP
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SavePoseConstraintToFileFilterCreator
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LocalRelaxAP
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Ramachandran
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SavePoseConstraintToFileFilterCreatorAP
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LocalRelaxCAP
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Ramachandran2B
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SavePoseConstraintToFileFilterCreatorCAP
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LocalRelaxCreatorAP
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Ramachandran2BAP
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SaveResfileToDiskFilter
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LocalRelaxCreatorCAP
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Ramachandran2BCAP
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SaveResfileToDiskFilterAP
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MiniRelaxAP
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RamachandranAP
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SaveResfileToDiskFilterCAP
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MiniRelaxCAP
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RamachandranCAP
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SaveResfileToDiskFilterCreator
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RelaxProtocolBaseAP
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ResPairMinimizationData
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SaveResfileToDiskFilterCreatorAP
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RelaxProtocolBaseCAP
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ResPairMinimizationDataAP
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SaveResfileToDiskFilterCreatorCAP
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RelaxScriptCommand
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ResPairMinimizationDataCAP
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ScoreCutoffFilter
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RelaxScriptCommandAP
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ResRangePredicate
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ScoreCutoffFilterAP
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RelaxScriptCommandCAP
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ResRangePredicateAP
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ScoreCutoffFilterCAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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ResRangePredicateCAP
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ScoreCutoffFilterCreator
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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ResSingleMinimizationData
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ScoreCutoffFilterCreatorAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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ResSingleMinimizationDataAP
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ScoreCutoffFilterCreatorCAP
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WorkUnit_BatchRelaxAP
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ResSingleMinimizationDataCAP
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ScoreEvaluator
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ResidualDipolarCoupling
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ScoreEvaluatorAP
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ResidualDipolarCouplingAP
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ScoreEvaluatorCAP
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ResidualDipolarCouplingCAP
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ScoreTypeFilter
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MPFastRelaxMoverAP
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ScoreTypeFilterAP
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ScoreTypeFilterCAP
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MPFastRelaxMoverCreatorAP
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ScoreTypeFilterCreator
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MPFastRelaxMoverCreatorCAP
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ResidueNblistData
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ScoreTypeFilterCreatorAP
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MembraneCenterPerturbationMoverAP
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ResidueNblistDataAP
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ScoreTypeFilterCreatorCAP
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MembraneCenterPerturbationMoverCAP
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ResidueNblistDataCAP
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SelectGdtEvaluator
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MembraneNormalPerturbationMoverAP
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ResidueNeighborConstIterator
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SelectGdtEvaluatorAP
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ResidueNeighborConstIteratorAP
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SelectGdtEvaluatorCAP
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MovePoseToMembraneCenterMoverAP
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ResidueNeighborConstIteratorCAP
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SelectMaxsubEvaluator
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MovePoseToMembraneCenterMoverCAP
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ResidueNeighborIterator
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SelectMaxsubEvaluatorAP
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RigidBodyDeterministicSpinMoverAP
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ResidueNeighborIteratorAP
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SelectMaxsubEvaluatorCAP
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RigidBodyDeterministicSpinMoverCAP
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ResidueNeighborIteratorCAP
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SelectRDC_Evaluator
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RigidBodyDofPerturbMoverAP
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ResiduePairNeighborList
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SelectRDC_EvaluatorAP
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RigidBodyDofPerturbMoverCAP
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ResiduePairNeighborListAP
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SelectRDC_EvaluatorCAP
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RigidBodyDofRandomTransMoverAP
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ResiduePairNeighborListCAP
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SelectRmsdEvaluator
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RigidBodyDofRandomTransMoverCAP
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SS_Info
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SelectRmsdEvaluatorAP
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RigidBodyDofRandomizeMoverAP
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SS_InfoAP
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SelectRmsdEvaluatorCAP
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RigidBodyDofRandomizeMoverCAP
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SS_InfoCAP
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ShapeComplementarityFilter
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RigidBodyDofSeqPerturbMoverAP
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SS_Killhairpins_Info
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ShapeComplementarityFilterAP
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RigidBodyDofSeqPerturbMoverCAP
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SS_Killhairpins_InfoAP
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ShapeComplementarityFilterCAP
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RigidBodyDofSeqRandomizeMoverAP
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SS_Killhairpins_InfoCAP
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ShapeComplementarityFilterCreator
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RigidBodyDofSeqRandomizeMoverCAP
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ScoreFunction
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ShapeComplementarityFilterCreatorAP
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ScoreFunctionAP
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RigidBodyDofSeqTransMoverCAP
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ScoreFunctionCAP
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SheetFilter
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RigidBodyDofTransMoverAP
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ScoreFunctionFactory
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SheetFilterAP
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RigidBodyDofTransMoverCAP
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ScoreFunctionFactoryAP
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SheetFilterCAP
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RigidBodyMotionMoverAP
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ScoreFunctionFactoryCAP
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PCS_data_per_lanthanidesAP
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DihedralConstraintCreatorAP
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AddChainMoverCreatorCAP
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DihedralConstraintCreatorCAP
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DihedralPairConstraintAP
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DihedralPairConstraintCreator
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DihedralPairConstraintCreatorCAP
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FabConstraint
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BBConRotMover
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BBConRotMoverAP
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BBConRotMoverCAP
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BBG8T3AMoverAP
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BBG8T3AMoverCAP
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BBGaussianMoverAP
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LocalCoordinateConstraintCreatorAP
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BBGaussianMoverCreatorAP
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BBGaussianMoverCreatorCAP
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BackboneMover
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MultiConstraintCreator
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BackboneMoverAP
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MultiConstraintCreatorAP
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BoltzmannRotamerMoverCreatorAP
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ChainGroupDiscriminator
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NamedAtomPairConstraint
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OffsetPeriodicBoundFunc
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OffsetPeriodicBoundFuncAP
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OffsetPeriodicBoundFuncCAP
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ClassicFragmentMover
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PeriodicBoundFunc
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PeriodicBoundFuncAP
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PeriodicBoundFuncCAP
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ClearConstraintsMover
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ClearConstraintsMoverAP
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ConstrainToIdealMoverAP
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ConstraintSetMover
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ConstraintSetMoverAP
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SiteConstraint
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CopyDofMover
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CutChainMover
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CutChainMoverAP
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CyclizationMoverAP
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DME_FilterMover
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DME_FilterMoverAP
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DeleteChainsMover
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DeleteChainsMoverAP
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DeleteChainsMoverCreator
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DesignRepackMover
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PCS_data_input_Ts2CAP
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__CPP_CstMinimizationData__
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DisulfideInsertionMoverCAP
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PCS_data_input_manager_Ts2AP
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__CPP_DOF_Constraint__
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DisulfideInsertionMoverCreator
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PCS_data_input_manager_Ts2CAP
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__CPP_DihedralConstraintCreator__
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DisulfideInsertionMoverCreatorAP
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PCS_data_per_lanthanides_Ts2
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__CPP_DihedralConstraint__
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DisulfideInsertionMoverCreatorCAP
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PCS_data_per_lanthanides_Ts2AP
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DumpPdb
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PCS_data_per_lanthanides_Ts2CAP
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__CPP_DihedralPairConstraint__
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DumpPdbAP
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PCS_file_data_Ts2
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__CPP_DistancePairConstraint__
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DumpPdbCAP
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PCS_file_data_Ts2AP
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DumpPdbCreator
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PCS_file_data_Ts2CAP
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__CPP_FabConstraint__
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DumpPdbCreatorAP
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PCS_line_data_Ts2
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DumpPdbCreatorCAP
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PCS_line_data_Ts2AP
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__CPP_KofNConstraint__
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EnergyCutRotamerTrialsMinMover
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PCS_line_data_Ts2CAP
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__CPP_LocalCoordinateConstraintCreator__
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EnergyCutRotamerTrialsMinMoverAP
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PCS_tensor_Ts2
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__CPP_LocalCoordinateConstraint__
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EnergyCutRotamerTrialsMinMoverCAP
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PCS_tensor_Ts2AP
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__CPP_MultiConstraintCreator__
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EnergyCutRotamerTrialsMover
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PCS_tensor_Ts2CAP
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__CPP_MultiConstraint__
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EnergyCutRotamerTrialsMoverAP
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PseudocontactShiftEnergyCreator_Ts2AP
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__CPP_NamedAngleConstraintCreator__
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EnergyCutRotamerTrialsMoverCAP
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PseudocontactShiftEnergyCreator_Ts2CAP
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__CPP_NamedAngleConstraint__
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ExtendedPoseMover
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TensorsOptimizer_Ts2
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__CPP_NamedAtomPairConstraint__
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ExtendedPoseMoverAP
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TensorsOptimizer_Ts2AP
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__CPP_NonResidueTypeConstraint__
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ExtendedPoseMoverCAP
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TensorsOptimizer_Ts2CAP
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__CPP_OffsetPeriodicBoundFunc__
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ExtendedPoseMoverCreator
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GridSearchIterator_Ts3
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__CPP_PeriodicBoundFunc__
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ExtendedPoseMoverCreatorAP
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GridSearchIterator_Ts3AP
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ExtendedPoseMoverCreatorCAP
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GridSearchIterator_Ts3CAP
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__CPP_ResidueTypeLinkingConstraint__
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FavorSequenceProfile
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PCS_Energy_Ts3AP
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__CPP_SequenceProfileConstraintCreator__
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FavorSequenceProfileAP
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PCS_Energy_Ts3CAP
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__CPP_SequenceProfileConstraint__
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FavorSequenceProfileCAP
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PCS_Energy_parameters_manager_Ts3AP
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FavorSequenceProfileCreator
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PCS_Energy_parameters_manager_Ts3CAP
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FavorSequenceProfileCreatorAP
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PCS_data_Ts3AP
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FavorSequenceProfileCreatorCAP
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PCS_data_Ts3CAP
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__CPP_SiteConstraint__
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FavorSymmetricSequence
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PCS_data_input_Ts3
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PhenixInterface
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FavorSymmetricSequenceAP
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PCS_data_input_Ts3AP
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PhenixInterfaceAP
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FavorSymmetricSequenceCAP
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PCS_data_input_Ts3CAP
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PhenixInterfaceCAP
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FavorSymmetricSequenceCreator
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PCS_data_input_manager_Ts3AP
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SingletonBase_T_core_chemical_ChemicalManager_T
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FavorSymmetricSequenceCreatorAP
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PCS_data_input_manager_Ts3CAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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FavorSymmetricSequenceCreatorCAP
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PCS_data_per_lanthanides_Ts3
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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FindConsensusSequence
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PCS_data_per_lanthanides_Ts3AP
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XtalMLEnergy
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FindConsensusSequenceAP
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PCS_data_per_lanthanides_Ts3CAP
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XtalMLEnergyAP
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FindConsensusSequenceCAP
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PCS_file_data_Ts3
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XtalMLEnergyCAP
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FindConsensusSequenceCreator
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PCS_file_data_Ts3AP
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XtalMLEnergyCreator
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FindConsensusSequenceCreatorAP
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PCS_file_data_Ts3CAP
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XtalMLEnergyCreatorAP
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FindConsensusSequenceCreatorCAP
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PCS_line_data_Ts3
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XtalMLEnergyCreatorCAP
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ForceDisulfidesMover
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PCS_line_data_Ts3AP
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__CPP_XtalMLEnergyCreator__
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ForceDisulfidesMoverAP
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PCS_line_data_Ts3CAP
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__CPP_XtalMLEnergy__
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ForceDisulfidesMoverCAP
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PCS_tensor_Ts3
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AtomPairFuncList
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ForceDisulfidesMoverCreator
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PCS_tensor_Ts3AP
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AtomPairFuncListAP
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ForceDisulfidesMoverCreatorAP
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PCS_tensor_Ts3CAP
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AtomPairFuncListCAP
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ForceDisulfidesMoverCreatorCAP
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PseudocontactShiftEnergyCreator_Ts3AP
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DistanceFunc
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FragmentCost
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PseudocontactShiftEnergyCreator_Ts3CAP
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DistanceFuncAP
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FragmentCostAP
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TensorsOptimizer_Ts3
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DistanceFuncCAP
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FragmentCostCAP
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TensorsOptimizer_Ts3AP
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FullatomCustomPairDistanceEnergy
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FragmentMover
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TensorsOptimizer_Ts3CAP
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FullatomCustomPairDistanceEnergyAP
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FragmentMoverAP
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GridSearchIterator_Ts4
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FullatomCustomPairDistanceEnergyCAP
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FragmentMoverCAP
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GridSearchIterator_Ts4AP
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FullatomCustomPairDistanceEnergyCreator
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GenericMonteCarloMover
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GridSearchIterator_Ts4CAP
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FullatomCustomPairDistanceEnergyCreatorAP
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GenericMonteCarloMoverAP
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PCS_Energy_Ts4AP
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FullatomCustomPairDistanceEnergyCreatorCAP
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GenericMonteCarloMoverCAP
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PCS_Energy_Ts4CAP
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__CPP_DistanceFunc__
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GenericMonteCarloMoverCreator
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PCS_Energy_parameters_manager_Ts4AP
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__CPP_FullatomCustomPairDistanceEnergyCreator__
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GenericMonteCarloMoverCreatorAP
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PCS_Energy_parameters_manager_Ts4CAP
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__CPP_FullatomCustomPairDistanceEnergy__
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GenericMonteCarloMoverCreatorCAP
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PCS_data_Ts4AP
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atoms_and_func_struct
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GreenPacker
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PCS_data_Ts4CAP
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atoms_and_func_structAP
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GreenPackerAP
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PCS_data_input_Ts4
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atoms_and_func_structCAP
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GreenPackerCAP
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PCS_data_input_Ts4AP
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resatom_and_func_struct
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GroupDiscriminator
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PCS_data_input_Ts4CAP
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resatom_and_func_structAP
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GroupDiscriminatorAP
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PCS_data_input_manager_Ts4AP
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resatom_and_func_structCAP
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GroupDiscriminatorCAP
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PCS_data_input_manager_Ts4CAP
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CBSG_Dihedral_Func
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GunnCost
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PCS_data_per_lanthanides_Ts4
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CBSG_Dihedral_FuncAP
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GunnCostAP
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PCS_data_per_lanthanides_Ts4AP
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CBSG_Dihedral_FuncCAP
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GunnCostCAP
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PCS_data_per_lanthanides_Ts4CAP
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CB_Angle_Func
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GunnTuple
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PCS_file_data_Ts4
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CB_Angle_FuncAP
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GunnTupleAP
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PCS_file_data_Ts4AP
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CB_Angle_FuncCAP
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GunnTupleCAP
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PCS_file_data_Ts4CAP
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CaCbCbCa_Dihedral_Func
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IonizableResidue
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PCS_line_data_Ts4
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CaCbCbCa_Dihedral_FuncAP
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IonizableResidueAP
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PCS_line_data_Ts4AP
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CaCbCbCa_Dihedral_FuncCAP
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IonizableResidueCAP
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PCS_line_data_Ts4CAP
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CaCbCb_Angle_Func
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LoadPDBMover
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PCS_tensor_Ts4
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CaCbCb_Angle_FuncAP
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LoadPDBMoverAP
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PCS_tensor_Ts4AP
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CaCbCb_Angle_FuncCAP
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LoadPDBMoverCAP
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PCS_tensor_Ts4CAP
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Cb_Distance_Func
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LoadPDBMoverCreator
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PseudocontactShiftEnergyCreator_Ts4AP
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Cb_Distance_FuncAP
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LoadPDBMoverCreatorAP
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PseudocontactShiftEnergyCreator_Ts4CAP
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Cb_Distance_FuncCAP
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LoadPDBMoverCreatorCAP
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TensorsOptimizer_Ts4
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Cen_Distance_Func
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LoadUnboundRotMover
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TensorsOptimizer_Ts4AP
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Cen_Distance_FuncAP
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LoadUnboundRotMoverAP
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TensorsOptimizer_Ts4CAP
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Cen_Distance_FuncCAP
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LoadUnboundRotMoverCAP
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PDDFEnergyAP
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CentroidDisulfideEnergy
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LoadUnboundRotMoverCreator
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PDDFEnergyCAP
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CentroidDisulfideEnergyAP
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LoadUnboundRotMoverCreatorAP
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PDDFEnergyCreatorAP
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CentroidDisulfideEnergyCAP
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LoadUnboundRotMoverCreatorCAP
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PDDFEnergyCreatorCAP
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CentroidDisulfideEnergyComponents
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LoggedFragmentMover
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CAcstGeneratorAP
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CentroidDisulfideEnergyComponentsAP
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LoggedFragmentMoverAP
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CAcstGeneratorCAP
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CentroidDisulfideEnergyComponentsCAP
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LoggedFragmentMoverCAP
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CAcstGeneratorCreatorAP
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CentroidDisulfideEnergyContainer
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MSDMover
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CAcstGeneratorCreatorCAP
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CentroidDisulfideEnergyContainerAP
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MSDMoverAP
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CloseFoldAP
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CentroidDisulfideEnergyContainerCAP
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MSDMoverCAP
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CloseFoldCAP
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CentroidDisulfideEnergyCreator
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MSDMoverCreator
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CloseFoldCreatorAP
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CentroidDisulfideEnergyCreatorAP
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MSDMoverCreatorAP
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CloseFoldCreatorCAP
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CentroidDisulfideEnergyCreatorCAP
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MSDMoverCreatorCAP
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CoordinateCstAP
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CentroidDisulfideNeighborConstIterator
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MakePolyXMover
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CoordinateCstCAP
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CentroidDisulfideNeighborConstIteratorAP
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MakePolyXMoverAP
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CoordinateCstCreatorAP
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CentroidDisulfideNeighborConstIteratorCAP
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MakePolyXMoverCAP
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CoordinateCstCreatorCAP
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CentroidDisulfideNeighborIterator
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MakePolyXMoverCreator
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DefineMovableLoopsAP
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CentroidDisulfideNeighborIteratorAP
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MakePolyXMoverCreatorAP
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DefineMovableLoopsCAP
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CentroidDisulfideNeighborIteratorCAP
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MakePolyXMoverCreatorCAP
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DefineMovableLoopsCreatorAP
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CentroidDisulfidePotential
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MembraneTopology
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DefineMovableLoopsCreatorCAP
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CentroidDisulfidePotentialAP
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MembraneTopologyAP
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GrowPeptidesAP
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CentroidDisulfidePotentialCAP
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MembraneTopologyCAP
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GrowPeptidesCAP
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DisulfResNeighbConstIterator
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MembraneTopologyCreator
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GrowPeptidesCreatorAP
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DisulfResNeighbConstIteratorAP
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MembraneTopologyCreatorAP
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GrowPeptidesCreatorCAP
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DisulfResNeighbConstIteratorCAP
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MembraneTopologyCreatorCAP
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SeedFoldTreeAP
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DisulfResNeighbIterator
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MinMover
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SeedFoldTreeCAP
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DisulfResNeighbIteratorAP
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MinMoverAP
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SeedFoldTreeCreatorAP
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DisulfResNeighbIteratorCAP
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MinMoverCAP
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SeedFoldTreeCreatorCAP
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DisulfideAtomIndices
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MinMoverCreator
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SeedSetupMoverAP
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DisulfideAtomIndicesAP
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MinMoverCreatorAP
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SeedSetupMoverCAP
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DisulfideAtomIndicesCAP
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MinMoverCreatorCAP
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SeedSetupMoverCreatorAP
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DisulfideMatchingDatabase
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MinPackMover
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SeedSetupMoverCreatorCAP
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DisulfideMatchingDatabaseAP
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MinPackMoverAP
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SegmentHybridizerAP
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DisulfideMatchingDatabaseCAP
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MinPackMoverCAP
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SegmentHybridizerCAP
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DisulfideMatchingEnergy
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MinPackMoverCreator
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SegmentHybridizerCreatorAP
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DisulfideMatchingEnergyAP
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MinPackMoverCreatorAP
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SegmentHybridizerCreatorCAP
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DisulfideMatchingEnergyCAP
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MinPackMoverCreatorCAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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DisulfideMatchingEnergyComponents
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MinimalRotamer
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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DisulfideMatchingEnergyComponentsAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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DisulfideMatchingEnergyComponentsCAP
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MinimalRotamerCAP
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SwapSegmentAP
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DisulfideMatchingEnergyContainer
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MissingDensityToJumpMover
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SwapSegmentCAP
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DisulfideMatchingEnergyContainerAP
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MissingDensityToJumpMoverAP
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SwapSegmentCreatorAP
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DisulfideMatchingEnergyContainerCAP
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MissingDensityToJumpMoverCAP
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SwapSegmentCreatorCAP
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DisulfideMatchingEnergyCreator
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ModifyVariantTypeMover
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AtomIDHashFunction
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DisulfideMatchingEnergyCreatorAP
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AtomIDHashFunctionAP
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DisulfideMatchingEnergyCreatorCAP
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ModifyVariantTypeMoverCAP
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AtomIDHashFunctionCAP
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DisulfideMatchingNeighborConstIterator
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ModifyVariantTypeMoverCreator
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BuriedPolarScoreAP
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DisulfideMatchingNeighborConstIteratorAP
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ModifyVariantTypeMoverCreatorAP
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BuriedPolarScoreCAP
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DisulfideMatchingNeighborConstIteratorCAP
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ModifyVariantTypeMoverCreatorCAP
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CBScoreAP
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DisulfideMatchingNeighborIterator
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MonteCarloRecover
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CBScoreCAP
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DisulfideMatchingNeighborIteratorAP
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MonteCarloRecoverAP
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ConstraintSetScoreAP
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DisulfideMatchingNeighborIteratorCAP
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MonteCarloRecoverCAP
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ConstraintSetScoreCAP
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DisulfideMatchingPotential
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MonteCarloRecoverCreator
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EdgeStandScoreAP
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DisulfideMatchingPotentialAP
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MonteCarloRecoverCreatorAP
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EdgeStandScoreCAP
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DisulfideMatchingPotentialCAP
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MonteCarloRecoverCreatorCAP
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HelixScoreAP
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FullatomDisulfideEnergy
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MonteCarloReset
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HelixScoreCAP
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FullatomDisulfideEnergyAP
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MonteCarloResetAP
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JointScoreAP
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FullatomDisulfideEnergyCAP
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MonteCarloResetCAP
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JointScoreCAP
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FullatomDisulfideEnergyComponents
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MonteCarloResetCreator
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LinkerScoreAP
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FullatomDisulfideEnergyComponentsAP
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MonteCarloResetCreatorAP
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LinkerScoreCAP
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FullatomDisulfideEnergyComponentsCAP
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MonteCarloResetCreatorCAP
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RigidScore
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FullatomDisulfideEnergyContainer
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MonteCarloTest
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RigidScoreAP
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FullatomDisulfideEnergyContainerAP
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MonteCarloTestAP
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RigidScoreCAP
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FullatomDisulfideEnergyContainerCAP
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MonteCarloTestCAP
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Rose
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FullatomDisulfideEnergyCreator
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MonteCarloTestCreator
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RoseAP
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FullatomDisulfideEnergyCreatorAP
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MonteCarloTestCreatorAP
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RoseCAP
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FullatomDisulfideEnergyCreatorCAP
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MonteCarloTestCreatorCAP
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SICFast
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FullatomDisulfideParams13
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MutateResidue
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SICFastAP
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FullatomDisulfideParams13AP
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MutateResidueAP
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SICFastCAP
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FullatomDisulfideParams13CAP
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MutateResidueCAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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FullatomDisulfidePotential
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MutateResidueCreator
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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FullatomDisulfidePotentialAP
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MutateResidueCreatorAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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FullatomDisulfidePotentialCAP
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MutateResidueCreatorCAP
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Vec3
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NCaCaC_Dihedral_Func
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O2M_MutateMover
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Vec3AP
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NCaCaC_Dihedral_FuncAP
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O2M_MutateMoverAP
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Vec3CAP
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NCaCaC_Dihedral_FuncCAP
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O2M_MutateMoverCAP
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XfoxmScore
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RT_helper
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PDBReloadMover
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XfoxmScoreAP
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RT_helperAP
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PDBReloadMoverAP
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XfoxmScoreCAP
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RT_helperCAP
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PDBReloadMoverCAP
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xyzStripeHashPoseWithMetaAP
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SGSG_Dihedral_Func
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PDBReloadMoverCreator
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xyzStripeHashPoseWithMetaCAP
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SGSG_Dihedral_FuncAP
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PDBReloadMoverCreatorAP
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MotifHashRigidScoreAP
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SGSG_Dihedral_FuncCAP
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PDBReloadMoverCreatorCAP
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MotifHashRigidScoreCAP
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SG_Dist_Func
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PSSM2BfactorMover
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SingletonBase_T_core_chemical_ChemicalManager_T
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SG_Dist_FuncAP
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PSSM2BfactorMoverAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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SG_Dist_FuncCAP
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PSSM2BfactorMoverCAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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__CPP_CBSG_Dihedral_Func__
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PSSM2BfactorMoverCreator
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TrisBpyScoreAP
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__CPP_CB_Angle_Func__
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PSSM2BfactorMoverCreatorAP
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TrisBpyScoreCAP
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__CPP_CaCbCbCa_Dihedral_Func__
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PSSM2BfactorMoverCreatorCAP
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AbinitioBaseFilterAP
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__CPP_CaCbCb_Angle_Func__
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PackRotamersMover
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AbinitioBaseFilterCAP
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__CPP_Cb_Distance_Func__
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PackRotamersMoverAP
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AlaScanAP
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__CPP_Cen_Distance_Func__
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PackRotamersMoverCAP
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AlaScanCAP
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__CPP_CentroidDisulfideEnergyContainer__
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PackRotamersMoverCreator
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AlaScanFilterCreatorAP
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__CPP_CentroidDisulfideEnergyCreator__
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PackRotamersMoverCreatorAP
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AlaScanFilterCreatorCAP
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__CPP_CentroidDisulfideEnergy__
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PackRotamersMoverCreatorCAP
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AngleToVectorAP
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__CPP_DisulfideMatchingEnergyContainer__
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PackRotamersMoverLazy
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AngleToVectorCAP
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__CPP_DisulfideMatchingEnergyCreator__
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PackRotamersMoverLazyAP
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AngleToVectorFilterCreatorAP
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__CPP_DisulfideMatchingEnergy__
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PackRotamersMoverLazyCAP
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AngleToVectorFilterCreatorCAP
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__CPP_FullatomDisulfideEnergyContainer__
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PackRotamersMoverLazyCreator
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AtomicContactFilterAP
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__CPP_FullatomDisulfideEnergyCreator__
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PackRotamersMoverLazyCreatorAP
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AtomicContactFilterCAP
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__CPP_FullatomDisulfideEnergy__
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PackRotamersMoverLazyCreatorCAP
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AtomicContactFilterCreatorAP
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__CPP_NCaCaC_Dihedral_Func__
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PeptideStapleMover
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AtomicContactFilterCreatorCAP
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__CPP_SGSG_Dihedral_Func__
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PeptideStapleMoverAP
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AtomicDistanceFilterAP
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__CPP_SG_Dist_Func__
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PeptideStapleMoverCAP
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AtomicDistanceFilterCAP
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BasePartner
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PeriodicBoxMover
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AtomicDistanceFilterCreatorAP
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BasePartnerAP
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PeriodicBoxMoverAP
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AtomicDistanceFilterCreatorCAP
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BasePartnerCAP
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PeriodicBoxMoverCAP
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AveragePathLengthFilterAP
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DNABFormPotential
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PeriodicBoxMoverCreator
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AveragePathLengthFilterCAP
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DNABFormPotentialAP
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PeriodicBoxMoverCreatorAP
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AveragePathLengthFilterCreatorAP
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DNABFormPotentialCAP
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PeriodicBoxMoverCreatorCAP
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AveragePathLengthFilterCreatorCAP
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DNAChiEnergy
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ProlineFixMover
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BatchEvaluatorAP
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DNAChiEnergyAP
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ProlineFixMoverAP
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BatchEvaluatorCAP
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DNAChiEnergyCAP
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ProlineFixMoverCAP
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BatchNrEvaluatorAP
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DNAChiEnergyCreator
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RandomOmegaFlipMover
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BatchNrEvaluatorCAP
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DNAChiEnergyCreatorAP
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RandomOmegaFlipMoverAP
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BuriedUnsatHbondFilterAP
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DNAChiEnergyCreatorCAP
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RandomOmegaFlipMoverCAP
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BuriedUnsatHbondFilterCAP
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DNATorsionEnergy
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RandomOmegaFlipMoverCreator
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BuriedUnsatHbondFilterCreatorAP
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DNATorsionEnergyAP
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RandomOmegaFlipMoverCreatorAP
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BuriedUnsatHbondFilterCreatorCAP
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DNATorsionEnergyCAP
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RandomOmegaFlipMoverCreatorCAP
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COFilterAP
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DNATorsionEnergyCreator
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RandomTorsionMover
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COFilterCAP
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DNATorsionEnergyCreatorAP
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RandomTorsionMoverAP
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CamShiftEvaluatorAP
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DNATorsionEnergyCreatorCAP
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RandomTorsionMoverCAP
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CamShiftEvaluatorCAP
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DNATorsionPotential
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RandomTorsionMoverCreator
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CamShiftEvaluatorCreatorAP
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DNATorsionPotentialAP
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RandomTorsionMoverCreatorAP
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CamShiftEvaluatorCreatorCAP
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DNATorsionPotentialCAP
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RandomTorsionMoverCreatorCAP
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ChiWellRmsdEvaluatorAP
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DNA_BasePotential
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RepackSidechainsMover
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ChiWellRmsdEvaluatorCAP
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DNA_BasePotentialAP
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RepackSidechainsMoverAP
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ChiWellRmsdEvaluatorCreatorAP
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DNA_BasePotentialCAP
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RepackSidechainsMoverCAP
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ChiWellRmsdEvaluatorCreatorCAP
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DirectReadoutPotential
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RepackSidechainsMoverCreator
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DirectReadoutPotentialAP
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RepackSidechainsMoverCreatorAP
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DirectReadoutPotentialCAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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RepeatPropagationMover
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ConservedPosMutationFilterCreatorCAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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RepeatPropagationMoverAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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RepeatPropagationMoverCAP
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TorsionFourierComponent
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RepeatPropagationMoverCreator
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TorsionFourierComponentAP
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RepeatPropagationMoverCreatorAP
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TorsionFourierComponentCAP
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__CPP_BasePartner__
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ReportEffectivePKA
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ContactMapEvaluatorCAP
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ReportEffectivePKAAP
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ContactMapEvaluatorCreatorAP
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__CPP_DNAChiEnergy__
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ReportEffectivePKACAP
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ContactMapEvaluatorCreatorCAP
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__CPP_DNATorsionEnergyCreator__
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ReportEffectivePKACreator
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__CPP_DNATorsionEnergy__
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ReportEffectivePKACreatorAP
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DdGScanCAP
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Dssp
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ReportEffectivePKACreatorCAP
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DdGScanCreatorAP
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DsspAP
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RepulsiveOnlyMover
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DdGScanCreatorCAP
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DsspCAP
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RepulsiveOnlyMoverAP
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DdgFilterAP
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Pairing
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RepulsiveOnlyMoverCAP
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DdgFilterCAP
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PairingAP
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ResTypeFragmentMover
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DdgFilterCreatorAP
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PairingCAP
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ResTypeFragmentMoverAP
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DdgFilterCreatorCAP
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ResTypeFragmentMoverCAP
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DeltaFilterAP
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StrandPairingAP
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ResetBaselineMover
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DeltaFilterCAP
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StrandPairingCAP
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ResetBaselineMoverAP
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DeltaFilterCreatorAP
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StrandPairingSet
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ResetBaselineMoverCAP
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DeltaFilterCreatorCAP
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StrandPairingSetAP
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ResetBaselineMoverCreator
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DisulfideEntropyFilterAP
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StrandPairingSetCAP
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ResetBaselineMoverCreatorAP
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DisulfideEntropyFilterCAP
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ElecAtom
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ResetBaselineMoverCreatorCAP
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DisulfideEntropyFilterCreatorAP
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ElecAtomAP
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ResidueTypeConstraintMover
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DisulfideEntropyFilterCreatorCAP
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ElecAtomCAP
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ResidueTypeConstraintMoverAP
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DomainInterfaceFilterAP
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ElecGroup
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DomainInterfaceFilterCAP
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ElecGroupAP
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ResidueTypeConstraintMoverCreator
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EnergyPerResidueFilterAP
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ElecGroupCAP
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ResidueTypeConstraintMoverCreatorAP
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EnergyPerResidueFilterCAP
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FAElecContextData
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ResidueTypeConstraintMoverCreatorCAP
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EnergyPerResidueFilterCreatorAP
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FAElecContextDataAP
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ReturnSidechainMover
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EnergyPerResidueFilterCreatorCAP
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FAElecContextDataCAP
)
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ReturnSidechainMoverAP
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EvaluatedTrialMoverAP
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FA_ElecEnergy
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ReturnSidechainMoverCAP
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EvaluatedTrialMoverCAP
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FA_ElecEnergyAP
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RingConformationMover
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ExpiryFilterAP
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FA_ElecEnergyAroAll
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RingConformationMoverAP
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ExpiryFilterCAP
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FA_ElecEnergyAroAllAP
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RingConformationMoverCAP
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(in
ExpiryFilterCreatorAP
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FA_ElecEnergyAroAllCAP
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RingConformationMoverCreator
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(in
ExpiryFilterCreatorCAP
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FA_ElecEnergyAroAllCreator
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RingConformationMoverCreatorAP
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(in
ExternalEvaluatorAP
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FA_ElecEnergyAroAllCreatorAP
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RingConformationMoverCreatorCAP
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(in
ExternalEvaluatorCAP
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FA_ElecEnergyAroAllCreatorCAP
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RotamerTrialsMinMover
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__instance_size__
(in
ExtraScoreEvaluatorCreatorAP
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FA_ElecEnergyAroAro
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RotamerTrialsMinMoverAP
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(in
ExtraScoreEvaluatorCreatorCAP
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FA_ElecEnergyAroAroAP
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RotamerTrialsMinMoverCAP
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FileExistFilterAP
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FA_ElecEnergyAroAroCAP
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RotamerTrialsMinMoverCreator
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FileExistFilterCAP
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FA_ElecEnergyAroAroCreator
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RotamerTrialsMinMoverCreatorAP
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FileExistFilterCreatorAP
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FA_ElecEnergyAroAroCreatorAP
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RotamerTrialsMinMoverCreatorCAP
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FileExistFilterCreatorCAP
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FA_ElecEnergyAroAroCreatorCAP
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RotamerTrialsMover
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FileRemoveFilterAP
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FA_ElecEnergyCAP
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RotamerTrialsMoverAP
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FileRemoveFilterCAP
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FA_ElecEnergyCreator
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RotamerTrialsMoverCAP
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FileRemoveFilterCreatorAP
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FA_ElecEnergyCreatorAP
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RotamerTrialsMoverCreator
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FileRemoveFilterCreatorCAP
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FA_ElecEnergyCreatorCAP
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RotamerTrialsMoverCreatorAP
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GeometryFilterAP
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FA_GrpElecEnergy
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RotamerTrialsMoverCreatorCAP
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GeometryFilterCAP
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FA_GrpElecEnergyAP
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RotamerizeMover
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GeometryFilterCreatorAP
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FA_GrpElecEnergyCAP
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RotamerizeMoverAP
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GeometryFilterCreatorCAP
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FA_GrpElecEnergyCreator
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RotamerizeMoverCAP
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HolesFilterAP
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FA_GrpElecEnergyCreatorAP
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SaneMinMover
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HolesFilterCAP
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FA_GrpElecEnergyCreatorCAP
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SaneMinMoverAP
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HolesFilterCreatorAP
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GroupElec
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SaneMinMoverCAP
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HolesFilterCreatorCAP
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GroupElecAP
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SaneMinMoverCreator
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InterRepeatContactFilterAP
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GroupElecCAP
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SaneMinMoverCreatorAP
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InterRepeatContactFilterCAP
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RNA_FA_ElecEnergy
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SaneMinMoverCreatorCAP
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InterRepeatContactFilterCreatorAP
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RNA_FA_ElecEnergyAP
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ScoreMover
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InterRepeatContactFilterCreatorCAP
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RNA_FA_ElecEnergyCAP
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ScoreMoverAP
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InterfaceBindingEnergyDensityFilterAP
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RNA_FA_ElecEnergyCreator
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ScoreMoverCAP
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InterfaceBindingEnergyDensityFilterCAP
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RNA_FA_ElecEnergyCreatorAP
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ScoreMoverCreator
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InterfaceBindingEnergyDensityFilterCreatorAP
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RNA_FA_ElecEnergyCreatorCAP
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ScoreMoverCreatorAP
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InterfaceBindingEnergyDensityFilterCreatorCAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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ScoreMoverCreatorCAP
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InterfaceSasaFilterAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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SequenceProfileMover
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InterfaceSasaFilterCAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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SequenceProfileMoverAP
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InterfaceSasaFilterCreatorAP
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__CPP_FAElecContextData__
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SequenceProfileMoverCAP
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(in
InterfaceSasaFilterCreatorCAP
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__CPP_FA_ElecEnergyAroAllCreator__
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SequenceProfileMoverCreator
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IntraRepeatContactFilterAP
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__CPP_FA_ElecEnergyAroAll__
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SequenceProfileMoverCreatorAP
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(in
IntraRepeatContactFilterCAP
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__CPP_FA_ElecEnergyAroAroCreator__
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SequenceProfileMoverCreatorCAP
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(in
IntraRepeatContactFilterCreatorAP
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__CPP_FA_ElecEnergyAroAro__
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SetReturningPackRotamersMover
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IntraRepeatContactFilterCreatorCAP
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__CPP_FA_ElecEnergyCreator__
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SetReturningPackRotamersMoverAP
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(in
JScoreEvaluatorAP
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__CPP_FA_ElecEnergy__
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SetReturningPackRotamersMoverCAP
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(in
JScoreEvaluatorCAP
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__CPP_FA_GrpElecEnergyCreator__
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SetTorsion
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JScoreEvaluatorCreatorAP
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__CPP_FA_GrpElecEnergy__
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SetTorsionAP
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JScoreEvaluatorCreatorCAP
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__CPP_RNA_FA_ElecEnergyCreator__
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SetTorsionCAP
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JumpEvaluatorAP
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__CPP_RNA_FA_ElecEnergy__
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SetTorsionCreator
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JumpEvaluatorCAP
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weight_triple
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SetTorsionCreatorAP
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JumpNrEvaluatorAP
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weight_tripleAP
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SetTorsionCreatorCAP
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JumpNrEvaluatorCAP
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weight_tripleCAP
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ShakeStructureMover
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JumpNrEvaluatorCreatorAP
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ElecDensAllAtomCenEnergy
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ShakeStructureMoverAP
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(in
JumpNrEvaluatorCreatorCAP
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ElecDensAllAtomCenEnergyAP
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ShakeStructureMoverCAP
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LeastNativeLike9merFilterAP
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ElecDensAllAtomCenEnergyCAP
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ShearMover
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LeastNativeLike9merFilterCAP
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ElecDensAllAtomCenEnergyCreator
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ShearMoverAP
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LeastNativeLike9merFilterCreatorAP
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ElecDensAllAtomCenEnergyCreatorAP
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ShearMoverCAP
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LeastNativeLike9merFilterCreatorCAP
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ElecDensAllAtomCenEnergyCreatorCAP
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ShearMoverCreator
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LoopRmsdEvaluatorAP
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__init__()
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ElecDensCenEnergy
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ShearMoverCreatorAP
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(in
LoopRmsdEvaluatorCAP
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ElecDensCenEnergyAP
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ShearMoverCreatorCAP
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(in
MotifScoreFilterAP
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ElecDensCenEnergyCAP
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ShortBackrubMover
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(in
MotifScoreFilterCAP
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ElecDensCenEnergyCreator
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ShortBackrubMoverAP
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(in
MotifScoreFilterCreatorAP
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__init__()
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ElecDensCenEnergyCreatorAP
)
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ShortBackrubMoverCAP
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(in
MotifScoreFilterCreatorCAP
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__init__()
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ElecDensCenEnergyCreatorCAP
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ShortBackrubMoverCreator
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__instance_size__
(in
MultipleSigmoidsAP
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__init__()
(in
ElecDensEnergy
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ShortBackrubMoverCreatorAP
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(in
MultipleSigmoidsCAP
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ElecDensEnergyAP
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ShortBackrubMoverCreatorCAP
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(in
MultipleSigmoidsFilterCreatorAP
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__init__()
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ElecDensEnergyCAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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(in
MultipleSigmoidsFilterCreatorCAP
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ElecDensEnergyCreator
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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(in
MutationsFilterAP
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ElecDensEnergyCreatorAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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(in
MutationsFilterCAP
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ElecDensEnergyCreatorCAP
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SmallMover
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(in
MutationsFilterCreatorAP
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__init__()
(in
ElectronDensity
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SmallMoverAP
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MutationsFilterCreatorCAP
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ElectronDensityAP
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__init__()
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SmallMoverCAP
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(in
NMerPSSMEnergyFilterAP
)
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ElectronDensityCAP
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SmallMoverCreator
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(in
NMerPSSMEnergyFilterCAP
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ElectronDensityLoader
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SmallMoverCreatorAP
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(in
NMerPSSMEnergyFilterCreatorAP
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ElectronDensityLoaderAP
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SmallMoverCreatorCAP
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(in
NMerPSSMEnergyFilterCreatorCAP
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ElectronDensityLoaderCAP
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SmoothFragmentMover
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(in
NMerSVMEnergyFilterAP
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ElectronDensityLoaderCreator
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SmoothFragmentMoverAP
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(in
NMerSVMEnergyFilterCAP
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ElectronDensityLoaderCreatorAP
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SmoothFragmentMoverCAP
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(in
NMerSVMEnergyFilterCreatorAP
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ElectronDensityLoaderCreatorCAP
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SuperimposeMover
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(in
NMerSVMEnergyFilterCreatorCAP
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ElectronDensityOptions
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SuperimposeMoverAP
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NativeEvaluatorCreatorAP
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ElectronDensityOptionsAP
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SuperimposeMoverCAP
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NativeEvaluatorCreatorCAP
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ElectronDensityOptionsCAP
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SuperimposeMoverCreator
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NeighborTypeFilterAP
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ElectronDensityOptionsCreator
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SuperimposeMoverCreatorAP
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NeighborTypeFilterCAP
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ElectronDensityOptionsCreatorAP
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SuperimposeMoverCreatorCAP
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NeighborTypeFilterCreatorAP
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ElectronDensityOptionsCreatorCAP
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SwitchChainOrderMover
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NeighborTypeFilterCreatorCAP
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FastDensEnergy
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SwitchChainOrderMoverAP
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(in
NetChargeFilterAP
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FastDensEnergyAP
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SwitchChainOrderMoverCAP
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NetChargeFilterCAP
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FastDensEnergyCAP
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SwitchChainOrderMoverCreator
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NetChargeFilterCreatorAP
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FastDensEnergyCreator
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SwitchChainOrderMoverCreatorAP
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(in
NetChargeFilterCreatorCAP
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FastDensEnergyCreatorAP
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SwitchChainOrderMoverCreatorCAP
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NonSequentialNeighborsFilterAP
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FastDensEnergyCreatorCAP
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SwitchResidueTypeSetMover
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NonSequentialNeighborsFilterCAP
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KromerMann
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SwitchResidueTypeSetMoverAP
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(in
NonSequentialNeighborsFilterCreatorAP
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KromerMannAP
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SwitchResidueTypeSetMoverCAP
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(in
NonSequentialNeighborsFilterCreatorCAP
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KromerMannCAP
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SwitchResidueTypeSetMoverCreator
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(in
OperatorAP
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OneGaussianScattering
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SwitchResidueTypeSetMoverCreatorAP
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OperatorCAP
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OneGaussianScatteringAP
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SwitchResidueTypeSetMoverCreatorCAP
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OperatorFilterCreatorAP
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OneGaussianScatteringCAP
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TailsScoreMover
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OperatorFilterCreatorCAP
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PattersonCorrEnergy
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TailsScoreMoverAP
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PDDFScoreFilterAP
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PattersonCorrEnergyAP
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TailsScoreMoverCAP
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PDDFScoreFilterCAP
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PattersonCorrEnergyCAP
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TaskAwareMinMover
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PackStatFilterAP
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PattersonCorrEnergyCreator
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TaskAwareMinMoverAP
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PackStatFilterCAP
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PattersonCorrEnergyCreatorAP
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TaskAwareMinMoverCAP
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PackStatFilterCreatorAP
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PattersonCorrEnergyCreatorCAP
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TaskAwareMinMoverCreator
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PackStatFilterCreatorCAP
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__CPP_ElecDensAllAtomCenEnergyCreator__
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TaskAwareMinMoverCreatorAP
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PackerNeighborGraphFilterAP
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__CPP_ElecDensAllAtomCenEnergy__
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TaskAwareMinMoverCreatorCAP
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PackerNeighborGraphFilterCAP
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__CPP_ElecDensCenEnergyCreator__
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ThermodynamicData
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PalesEvaluatorAP
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__CPP_ElecDensCenEnergy__
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ThermodynamicDataAP
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PalesEvaluatorCAP
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__CPP_ElecDensEnergyCreator__
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ThermodynamicDataCAP
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PalesEvaluatorCreatorAP
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__CPP_ElecDensEnergy__
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TorsionDOFMover
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PalesEvaluatorCreatorCAP
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__CPP_ElectronDensityLoaderCreator__
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TorsionDOFMoverAP
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PoolEvaluatorCreatorAP
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__CPP_ElectronDensityLoader__
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TorsionDOFMoverCAP
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PoolEvaluatorCreatorCAP
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__CPP_ElectronDensityOptionsCreator__
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TorsionSetMover
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PoseCommentAP
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__CPP_ElectronDensityOptions__
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TorsionSetMoverAP
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PoseCommentCAP
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__CPP_FastDensEnergyCreator__
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TorsionSetMoverCAP
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PoseCommentFilterCreatorAP
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__CPP_FastDensEnergy__
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Tumble
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PoseCommentFilterCreatorCAP
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__CPP_PattersonCorrEnergyCreator__
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TumbleAP
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PoseInfoFilterAP
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__CPP_PattersonCorrEnergy__
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TumbleCAP
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PoseInfoFilterCAP
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poseCoord
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TumbleCreator
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PoseInfoFilterCreatorAP
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poseCoordAP
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TumbleCreatorAP
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PoseInfoFilterCreatorCAP
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poseCoordCAP
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TumbleCreatorCAP
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PredictedBurialEvaluatorAP
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ElecDensAtomwiseEnergy
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UniformRotationMover
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(in
PredictedBurialEvaluatorCAP
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ElecDensAtomwiseEnergyAP
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UniformRotationMoverAP
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TotalSasaFilterAP
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AddCavitiesMoverAP
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FiberDiffractionLoaderAP
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BBG8T3AMoverAP
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FiberDiffractionLoaderCreator
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FiberDiffractionLoaderCreatorAP
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ddG
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ddGCreator
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AsymFoldandDockMoveRbJumpMover
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AsymFoldandDockMoveRbJumpMoverAP
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AsymFoldandDockRbTrialMover
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ChangeAndResetFoldTreeMoverAP
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DisulfideInsertionMoverCAP
)
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FlatHarmonicFunc
)
__init__()
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OopRandomPuckMoverCAP
)
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(in
DisulfideInsertionMoverCreatorAP
)
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FlatHarmonicFuncAP
)
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OopRandomSmallMover
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(in
DisulfideInsertionMoverCreatorCAP
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FlatHarmonicFuncCAP
)
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OopRandomSmallMoverAP
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(in
DumpPdbAP
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FourPointsFunc
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OopRandomSmallMoverCAP
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DumpPdbCAP
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FourPointsFuncAP
)
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__CPP_OopDPuckMinusMover__
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DumpPdbCreatorAP
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FourPointsFuncCAP
)
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__CPP_OopDPuckPlusMover__
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DumpPdbCreatorCAP
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Func
)
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__CPP_OopMover__
)
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EnergyCutRotamerTrialsMinMoverAP
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FuncAP
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__CPP_OopPatcher__
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(in
EnergyCutRotamerTrialsMinMoverCAP
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FuncCAP
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__CPP_OopPuckMinusMover__
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EnergyCutRotamerTrialsMoverAP
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FuncFactory
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__CPP_OopPuckPlusMover__
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(in
EnergyCutRotamerTrialsMoverCAP
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FuncFactoryAP
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__CPP_OopRandomPuckMover__
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ExtendedPoseMoverAP
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FuncFactoryCAP
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__CPP_OopRandomSmallMover__
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ExtendedPoseMoverCAP
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GaussianChainDoubleFunc
)
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RationalMonteCarlo
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ExtendedPoseMoverCreatorAP
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GaussianChainDoubleFuncAP
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RationalMonteCarloAP
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ExtendedPoseMoverCreatorCAP
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GaussianChainDoubleFuncCAP
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RationalMonteCarloCAP
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FavorSequenceProfileAP
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GaussianChainFunc
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__CPP_RationalMonteCarlo__
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FavorSequenceProfileCAP
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GaussianChainFuncAP
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JumpRotamerSidechainMover
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FavorSequenceProfileCreatorAP
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GaussianChainFuncCAP
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JumpRotamerSidechainMoverAP
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(in
FavorSequenceProfileCreatorCAP
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GaussianChainQuadrupleFunc
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JumpRotamerSidechainMoverCAP
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(in
FavorSymmetricSequenceAP
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GaussianChainQuadrupleFuncAP
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JumpRotamerSidechainMoverCreator
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(in
FavorSymmetricSequenceCAP
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GaussianChainQuadrupleFuncCAP
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JumpRotamerSidechainMoverCreatorAP
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(in
FavorSymmetricSequenceCreatorAP
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GaussianChainSingleFunc
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JumpRotamerSidechainMoverCreatorCAP
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FavorSymmetricSequenceCreatorCAP
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GaussianChainSingleFuncAP
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PerturbChiSidechainMover
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FindConsensusSequenceAP
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GaussianChainSingleFuncCAP
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PerturbChiSidechainMoverAP
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(in
FindConsensusSequenceCAP
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GaussianChainTripleFunc
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PerturbChiSidechainMoverCAP
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(in
FindConsensusSequenceCreatorAP
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GaussianChainTripleFuncAP
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PerturbChiSidechainMoverCreator
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(in
FindConsensusSequenceCreatorCAP
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GaussianChainTripleFuncCAP
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PerturbChiSidechainMoverCreatorAP
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__instance_size__
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ForceDisulfidesMoverAP
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GaussianFunc
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PerturbChiSidechainMoverCreatorCAP
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ForceDisulfidesMoverCAP
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GaussianFuncAP
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PerturbRotamerSidechainMover
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(in
ForceDisulfidesMoverCreatorAP
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GaussianFuncCAP
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PerturbRotamerSidechainMoverAP
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(in
ForceDisulfidesMoverCreatorCAP
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__init__()
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HarmonicFunc
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PerturbRotamerSidechainMoverCAP
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(in
FragmentCostAP
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HarmonicFuncAP
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PerturbRotamerSidechainMoverCreator
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(in
FragmentCostCAP
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HarmonicFuncCAP
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PerturbRotamerSidechainMoverCreatorAP
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(in
FragmentMoverAP
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IdentityFunc
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PerturbRotamerSidechainMoverCreatorCAP
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(in
FragmentMoverCAP
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IdentityFuncAP
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SetChiMover
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(in
GenericMonteCarloMoverAP
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__init__()
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IdentityFuncCAP
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SetChiMoverAP
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__instance_size__
(in
GenericMonteCarloMoverCAP
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__init__()
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KarplusFunc
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SetChiMoverCAP
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GenericMonteCarloMoverCreatorAP
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KarplusFuncAP
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SetChiMoverCreator
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(in
GenericMonteCarloMoverCreatorCAP
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(in
KarplusFuncCAP
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SetChiMoverCreatorAP
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(in
GreenPackerAP
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__init__()
(in
LinearPenaltyFunction
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SetChiMoverCreatorCAP
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(in
GreenPackerCAP
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LinearPenaltyFunctionAP
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__init__()
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SidechainMCMover
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(in
GroupDiscriminator
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LinearPenaltyFunctionCAP
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SidechainMCMoverAP
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__instance_size__
(in
GroupDiscriminatorAP
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__init__()
(in
MinMultiHarmonicFunc
)
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SidechainMCMoverCAP
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(in
GroupDiscriminatorCAP
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MinMultiHarmonicFuncAP
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__init__()
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SidechainMCMoverCreator
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__instance_size__
(in
GunnCost
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MinMultiHarmonicFuncCAP
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SidechainMCMoverCreatorAP
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(in
GunnCostAP
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__init__()
(in
MixtureFunc
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__init__()
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SidechainMCMoverCreatorCAP
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(in
GunnCostCAP
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MixtureFuncAP
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__init__()
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SidechainMover
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__instance_size__
(in
GunnTuple
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MixtureFuncCAP
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SidechainMoverAP
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(in
GunnTupleAP
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__init__()
(in
PeriodicFunc
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SidechainMoverBase
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(in
GunnTupleCAP
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PeriodicFuncAP
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SidechainMoverBaseAP
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__instance_size__
(in
IonizableResidue
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PeriodicFuncCAP
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SidechainMoverBaseCAP
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__instance_size__
(in
IonizableResidueAP
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__init__()
(in
ResiduePairXYZ
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SidechainMoverCAP
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__instance_size__
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IonizableResidueCAP
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ResiduePairXYZAP
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SidechainMoverCreator
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(in
LoadPDBMoverAP
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ResiduePairXYZCAP
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SidechainMoverCreatorAP
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__instance_size__
(in
LoadPDBMoverCAP
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__init__()
(in
ResidueXYZ
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SidechainMoverCreatorCAP
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__instance_size__
(in
LoadPDBMoverCreatorAP
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__init__()
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ResidueXYZAP
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__init__()
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__CPP_JumpRotamerSidechainMoverCreator__
)
__instance_size__
(in
LoadPDBMoverCreatorCAP
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__init__()
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ResidueXYZCAP
)
__init__()
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__CPP_JumpRotamerSidechainMover__
)
__instance_size__
(in
LoadUnboundRotMoverAP
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__init__()
(in
SOGFunc
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__init__()
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__CPP_PerturbChiSidechainMoverCreator__
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__instance_size__
(in
LoadUnboundRotMoverCAP
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__init__()
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SOGFuncAP
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__init__()
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__CPP_PerturbChiSidechainMover__
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__instance_size__
(in
LoadUnboundRotMoverCreatorAP
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__init__()
(in
SOGFuncCAP
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__init__()
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__CPP_PerturbRotamerSidechainMoverCreator__
)
__instance_size__
(in
LoadUnboundRotMoverCreatorCAP
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__init__()
(in
SOGFunc_Impl
)
__init__()
(in
__CPP_PerturbRotamerSidechainMover__
)
__instance_size__
(in
LoggedFragmentMoverAP
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__init__()
(in
SOGFunc_ImplAP
)
__init__()
(in
__CPP_SetChiMoverCreator__
)
__instance_size__
(in
LoggedFragmentMoverCAP
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__init__()
(in
SOGFunc_ImplCAP
)
__init__()
(in
__CPP_SetChiMover__
)
__instance_size__
(in
MSDMoverAP
)
__init__()
(in
ScalarWeightedFunc
)
__init__()
(in
__CPP_SidechainMCMoverCreator__
)
__instance_size__
(in
MSDMoverCAP
)
__init__()
(in
ScalarWeightedFuncAP
)
__init__()
(in
__CPP_SidechainMCMover__
)
__instance_size__
(in
MSDMoverCreatorAP
)
__init__()
(in
ScalarWeightedFuncCAP
)
__init__()
(in
__CPP_SidechainMoverBase__
)
__instance_size__
(in
MSDMoverCreatorCAP
)
__init__()
(in
SigmoidFunc
)
__init__()
(in
__CPP_SidechainMoverCreator__
)
__instance_size__
(in
MakePolyXMoverAP
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__init__()
(in
SigmoidFuncAP
)
__init__()
(in
__CPP_SidechainMover__
)
__instance_size__
(in
MakePolyXMoverCAP
)
__init__()
(in
SigmoidFuncCAP
)
__init__()
(in
DetectSymmetry
)
__instance_size__
(in
MakePolyXMoverCreatorAP
)
__init__()
(in
SkipViolFunc
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__init__()
(in
DetectSymmetryAP
)
__instance_size__
(in
MakePolyXMoverCreatorCAP
)
__init__()
(in
SkipViolFuncAP
)
__init__()
(in
DetectSymmetryCAP
)
__instance_size__
(in
MembraneTopologyAP
)
__init__()
(in
SkipViolFuncCAP
)
__init__()
(in
DetectSymmetryMoverCreator
)
__instance_size__
(in
MembraneTopologyCAP
)
__init__()
(in
SoedingFunc
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__init__()
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DetectSymmetryMoverCreatorAP
)
__instance_size__
(in
MembraneTopologyCreatorAP
)
__init__()
(in
SoedingFuncAP
)
__init__()
(in
DetectSymmetryMoverCreatorCAP
)
__instance_size__
(in
MembraneTopologyCreatorCAP
)
__init__()
(in
SoedingFuncCAP
)
__init__()
(in
ExtractAsymmetricPoseMover
)
__instance_size__
(in
MinMoverAP
)
__init__()
(in
SplineFunc
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__init__()
(in
ExtractAsymmetricPoseMoverAP
)
__instance_size__
(in
MinMoverCAP
)
__init__()
(in
SplineFuncAP
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__init__()
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ExtractAsymmetricPoseMoverCAP
)
__instance_size__
(in
MinMoverCreatorAP
)
__init__()
(in
SplineFuncCAP
)
__init__()
(in
ExtractAsymmetricPoseMoverCreator
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__instance_size__
(in
MinMoverCreatorCAP
)
__init__()
(in
SquareWell2Func
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__init__()
(in
ExtractAsymmetricPoseMoverCreatorAP
)
__instance_size__
(in
MinPackMoverAP
)
__init__()
(in
SquareWell2FuncAP
)
__init__()
(in
ExtractAsymmetricPoseMoverCreatorCAP
)
__instance_size__
(in
MinPackMoverCAP
)
__init__()
(in
SquareWell2FuncCAP
)
__init__()
(in
ExtractAsymmetricUnitMover
)
__instance_size__
(in
MinPackMoverCreatorAP
)
__init__()
(in
SquareWellFunc
)
__init__()
(in
ExtractAsymmetricUnitMoverAP
)
__instance_size__
(in
MinPackMoverCreatorCAP
)
__init__()
(in
SquareWellFuncAP
)
__init__()
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ExtractAsymmetricUnitMoverCAP
)
__instance_size__
(in
MinimalRotamer
)
__init__()
(in
SquareWellFuncCAP
)
__init__()
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ExtractAsymmetricUnitMoverCreator
)
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(in
MinimalRotamerAP
)
__init__()
(in
SumFunc
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__init__()
(in
ExtractAsymmetricUnitMoverCreatorAP
)
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(in
MinimalRotamerCAP
)
__init__()
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SumFuncAP
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__init__()
(in
ExtractAsymmetricUnitMoverCreatorCAP
)
__instance_size__
(in
MissingDensityToJumpMoverAP
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__init__()
(in
SumFuncCAP
)
__init__()
(in
FaSymDockingSlideTogether
)
__instance_size__
(in
MissingDensityToJumpMoverCAP
)
__init__()
(in
TopOutFunc
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__init__()
(in
FaSymDockingSlideTogetherAP
)
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(in
ModifyVariantTypeMoverAP
)
__init__()
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TopOutFuncAP
)
__init__()
(in
FaSymDockingSlideTogetherCAP
)
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(in
ModifyVariantTypeMoverCAP
)
__init__()
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TopOutFuncCAP
)
__init__()
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NCSResMapping
)
__instance_size__
(in
ModifyVariantTypeMoverCreatorAP
)
__init__()
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USOGFunc
)
__init__()
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NCSResMappingAP
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(in
ModifyVariantTypeMoverCreatorCAP
)
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USOGFuncAP
)
__init__()
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NCSResMappingCAP
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(in
MonteCarloRecoverAP
)
__init__()
(in
USOGFuncCAP
)
__init__()
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OrderedSequentialSymmetrySlider
)
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(in
MonteCarloRecoverCAP
)
__init__()
(in
XYZ_Func
)
__init__()
(in
OrderedSequentialSymmetrySliderAP
)
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(in
MonteCarloRecoverCreatorAP
)
__init__()
(in
XYZ_FuncAP
)
__init__()
(in
OrderedSequentialSymmetrySliderCAP
)
__instance_size__
(in
MonteCarloRecoverCreatorCAP
)
__init__()
(in
XYZ_FuncCAP
)
__init__()
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RandomSymmetrySlider
)
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(in
MonteCarloResetAP
)
__init__()
(in
__CPP_AmberPeriodicFunc__
)
__init__()
(in
RandomSymmetrySliderAP
)
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(in
MonteCarloResetCAP
)
__init__()
(in
__CPP_CharmmPeriodicFunc__
)
__init__()
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RandomSymmetrySliderCAP
)
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(in
MonteCarloResetCreatorAP
)
__init__()
(in
__CPP_CircularGeneral1D_Func__
)
__init__()
(in
SequentialSymmetrySlider
)
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(in
MonteCarloResetCreatorCAP
)
__init__()
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__CPP_CircularHarmonicFunc__
)
__init__()
(in
SequentialSymmetrySliderAP
)
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(in
MonteCarloTestAP
)
__init__()
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__CPP_CircularPowerFunc__
)
__init__()
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SequentialSymmetrySliderCAP
)
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(in
MonteCarloTestCAP
)
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__CPP_CircularSigmoidalFunc__
)
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SetupForSymmetryMover
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(in
MonteCarloTestCreatorAP
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__CPP_CircularSplineFunc__
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SetupForSymmetryMoverAP
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MonteCarloTestCreatorCAP
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__CPP_ConformationXYZ__
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SetupForSymmetryMoverCAP
)
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(in
MutateResidueAP
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__CPP_ConstantFunc__
)
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SetupForSymmetryMoverCreator
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(in
MutateResidueCAP
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__CPP_CountViolFunc__
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SetupForSymmetryMoverCreatorAP
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(in
MutateResidueCreatorAP
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__CPP_EtableFunc__
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SetupForSymmetryMoverCreatorCAP
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MutateResidueCreatorCAP
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__CPP_FadeFunc__
)
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SetupNCSMover
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(in
O2M_MutateMoverAP
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__CPP_FlatHarmonicFunc__
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SetupNCSMoverAP
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O2M_MutateMoverCAP
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__CPP_FourPointsFunc__
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SetupNCSMoverCAP
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PDBReloadMoverAP
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__CPP_Func__
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SetupNCSMoverCreator
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PDBReloadMoverCAP
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__CPP_GaussianChainDoubleFunc__
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SetupNCSMoverCreatorAP
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PDBReloadMoverCreatorAP
)
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__CPP_GaussianChainFunc__
)
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SetupNCSMoverCreatorCAP
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(in
PDBReloadMoverCreatorCAP
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__CPP_GaussianChainQuadrupleFunc__
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SymDockingInitialPerturbation
)
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(in
PSSM2BfactorMoverAP
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__CPP_GaussianChainSingleFunc__
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SymDockingInitialPerturbationAP
)
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(in
PSSM2BfactorMoverCAP
)
__init__()
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__CPP_GaussianChainTripleFunc__
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SymDockingInitialPerturbationCAP
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(in
PSSM2BfactorMoverCreatorAP
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__init__()
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__CPP_GaussianFunc__
)
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SymDockingSlideIntoContact
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(in
PSSM2BfactorMoverCreatorCAP
)
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(in
__CPP_HarmonicFunc__
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SymDockingSlideIntoContactAP
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PackRotamersMoverAP
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__CPP_IdentityFunc__
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__init__()
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SymDockingSlideIntoContactCAP
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(in
PackRotamersMoverCAP
)
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(in
__CPP_KarplusFunc__
)
__init__()
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SymEnergyCutRotamerTrialsMover
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(in
PackRotamersMoverCreatorAP
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__CPP_LinearPenaltyFunction__
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__init__()
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SymEnergyCutRotamerTrialsMoverAP
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__instance_size__
(in
PackRotamersMoverCreatorCAP
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__init__()
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__CPP_MinMultiHarmonicFunc__
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SymEnergyCutRotamerTrialsMoverCAP
)
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(in
PackRotamersMoverLazyAP
)
__init__()
(in
__CPP_MixtureFunc__
)
__init__()
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SymMinMover
)
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(in
PackRotamersMoverLazyCAP
)
__init__()
(in
__CPP_PeriodicFunc__
)
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SymMinMoverAP
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PackRotamersMoverLazyCreatorAP
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__CPP_ResiduePairXYZ__
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SymMinMoverCAP
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PackRotamersMoverLazyCreatorCAP
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__CPP_ResidueXYZ__
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SymMinMoverCreator
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PeptideStapleMoverAP
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__CPP_SOGFunc__
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SymMinMoverCreatorAP
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PeptideStapleMoverCAP
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__CPP_ScalarWeightedFunc__
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SymMinMoverCreatorCAP
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PeriodicBoxMoverAP
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__CPP_SigmoidFunc__
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SymPackRotamersMover
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PeriodicBoxMoverCAP
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__CPP_SkipViolFunc__
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SymPackRotamersMoverAP
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(in
PeriodicBoxMoverCreatorAP
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__CPP_SoedingFunc__
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SymPackRotamersMoverCAP
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PeriodicBoxMoverCreatorCAP
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__CPP_SplineFunc__
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SymPackRotamersMoverCreator
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(in
ProlineFixMoverAP
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__CPP_SquareWell2Func__
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SymPackRotamersMoverCreatorAP
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ProlineFixMoverCAP
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__CPP_SquareWellFunc__
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SymPackRotamersMoverCreatorCAP
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RandomOmegaFlipMoverAP
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__CPP_SumFunc__
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SymRotamerTrialsMover
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RandomOmegaFlipMoverCAP
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__CPP_TopOutFunc__
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SymRotamerTrialsMoverAP
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RandomOmegaFlipMoverCreatorAP
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__CPP_USOGFunc__
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SymRotamerTrialsMoverCAP
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RandomOmegaFlipMoverCreatorCAP
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__CPP_XYZ_Func__
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SymRotamerTrialsMoverCreator
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RandomTorsionMoverAP
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ContextDependentGeometricSolEnergy
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SymRotamerTrialsMoverCreatorAP
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RandomTorsionMoverCAP
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ContextDependentGeometricSolEnergyAP
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SymRotamerTrialsMoverCreatorCAP
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RandomTorsionMoverCreatorAP
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ContextDependentGeometricSolEnergyCAP
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SymShakeStructureMover
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RandomTorsionMoverCreatorCAP
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ContextDependentGeometricSolEnergyCreator
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SymShakeStructureMoverAP
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RepackSidechainsMoverAP
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ContextDependentGeometricSolEnergyCreatorAP
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SymShakeStructureMoverCAP
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RepackSidechainsMoverCAP
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ContextDependentGeometricSolEnergyCreatorCAP
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SymmetricRMSMover
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RepackSidechainsMoverCreatorAP
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ContextIndependentGeometricSolEnergy
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SymmetricRMSMoverAP
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RepackSidechainsMoverCreatorCAP
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ContextIndependentGeometricSolEnergyAP
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SymmetricRMSMoverCAP
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RepeatPropagationMoverAP
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ContextIndependentGeometricSolEnergyCAP
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SymmetrySlider
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RepeatPropagationMoverCAP
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ContextIndependentGeometricSolEnergyCreator
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SymmetrySliderAP
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RepeatPropagationMoverCreatorAP
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ContextIndependentGeometricSolEnergyCreatorAP
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SymmetrySliderCAP
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RepeatPropagationMoverCreatorCAP
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ContextIndependentGeometricSolEnergyCreatorCAP
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TaskAwareSymMinMover
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ReportEffectivePKAAP
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DatabaseOccSolEne
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TaskAwareSymMinMoverAP
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ReportEffectivePKACAP
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DatabaseOccSolEneAP
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TaskAwareSymMinMoverCAP
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ReportEffectivePKACreatorAP
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DatabaseOccSolEneCAP
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TaskAwareSymMinMoverCreator
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ReportEffectivePKACreatorCAP
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ExactOccludedHbondSolEnergy
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TaskAwareSymMinMoverCreatorAP
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RepulsiveOnlyMoverAP
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ExactOccludedHbondSolEnergyAP
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TaskAwareSymMinMoverCreatorCAP
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RepulsiveOnlyMoverCAP
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ExactOccludedHbondSolEnergyCAP
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__CPP_DetectSymmetryMoverCreator__
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ResTypeFragmentMoverAP
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ExactOccludedHbondSolEnergyCreator
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__CPP_DetectSymmetry__
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ResTypeFragmentMoverCAP
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ExactOccludedHbondSolEnergyCreatorAP
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__CPP_ExtractAsymmetricPoseMoverCreator__
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ResetBaselineMoverAP
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ExactOccludedHbondSolEnergyCreatorCAP
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__CPP_ExtractAsymmetricPoseMover__
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ResetBaselineMoverCAP
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GeometricSolEnergyEvaluator
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__CPP_ExtractAsymmetricUnitMoverCreator__
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ResetBaselineMoverCreatorAP
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GeometricSolEnergyEvaluatorAP
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__CPP_ExtractAsymmetricUnitMover__
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ResetBaselineMoverCreatorCAP
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GeometricSolEnergyEvaluatorCAP
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__CPP_FaSymDockingSlideTogether__
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ResidueTypeConstraintMoverAP
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GridInfo
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__CPP_NCSResMapping__
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ResidueTypeConstraintMoverCAP
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GridInfoAP
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__CPP_OrderedSequentialSymmetrySlider__
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ResidueTypeConstraintMoverCreatorAP
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GridInfoCAP
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__CPP_RandomSymmetrySlider__
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ResidueTypeConstraintMoverCreatorCAP
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OccludedHbondSolEnergy
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__CPP_SequentialSymmetrySlider__
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ReturnSidechainMoverAP
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OccludedHbondSolEnergyAP
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__CPP_SetupForSymmetryMoverCreator__
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ReturnSidechainMoverCAP
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OccludedHbondSolEnergyCAP
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__CPP_SetupForSymmetryMover__
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RingConformationMoverAP
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OccludedHbondSolEnergyCreator
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__CPP_SetupNCSMoverCreator__
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RingConformationMoverCAP
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OccludedHbondSolEnergyCreatorAP
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__CPP_SetupNCSMover__
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RingConformationMoverCreatorAP
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OccludedHbondSolEnergyCreatorCAP
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__CPP_SymDockingInitialPerturbation__
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RingConformationMoverCreatorCAP
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OccludedHbondSolEnergy_onebody
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__CPP_SymDockingSlideIntoContact__
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RotamerTrialsMinMoverAP
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OccludedHbondSolEnergy_onebodyAP
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__CPP_SymEnergyCutRotamerTrialsMover__
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RotamerTrialsMinMoverCAP
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OccludedHbondSolEnergy_onebodyCAP
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__CPP_SymMinMoverCreator__
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RotamerTrialsMinMoverCreatorAP
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OccludedHbondSolEnergy_onebodyCreator
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__CPP_SymMinMover__
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RotamerTrialsMinMoverCreatorCAP
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OccludedHbondSolEnergy_onebodyCreatorAP
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__CPP_SymPackRotamersMoverCreator__
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RotamerTrialsMoverAP
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OccludedHbondSolEnergy_onebodyCreatorCAP
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__CPP_SymPackRotamersMover__
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RotamerTrialsMoverCAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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__CPP_SymRotamerTrialsMoverCreator__
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RotamerTrialsMoverCreatorAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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__CPP_SymRotamerTrialsMover__
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RotamerTrialsMoverCreatorCAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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__CPP_SymShakeStructureMover__
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RotamerizeMoverAP
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SingletonBase_T_core_scoring_geometric_solvation_GridInfo_T
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__CPP_SymmetricRMSMover__
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RotamerizeMoverCAP
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SingletonBase_T_core_scoring_geometric_solvation_GridInfo_TAP
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__CPP_SymmetrySlider__
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SaneMinMoverAP
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SingletonBase_T_core_scoring_geometric_solvation_GridInfo_TCAP
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__CPP_TaskAwareSymMinMoverCreator__
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SaneMinMoverCAP
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SingletonBase_T_core_scoring_geometric_solvation_WaterWeightGridSet_T
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__CPP_TaskAwareSymMinMover__
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(in
SaneMinMoverCreatorAP
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SingletonBase_T_core_scoring_geometric_solvation_WaterWeightGridSet_TAP
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(in
ANN
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(in
SaneMinMoverCreatorCAP
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SingletonBase_T_core_scoring_geometric_solvation_WaterWeightGridSet_TCAP
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(in
ANNAP
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(in
ScoreMoverAP
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WaterWeightGridSet
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ANNCAP
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ScoreMoverCAP
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WaterWeightGridSetAP
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__init__()
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CORdata
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ScoreMoverCreatorAP
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WaterWeightGridSetCAP
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CORdataAP
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ScoreMoverCreatorCAP
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__CPP_ContextDependentGeometricSolEnergyCreator__
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CORdataCAP
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SequenceProfileMoverAP
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__CPP_ContextDependentGeometricSolEnergy__
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ChemicalShiftEvaluator
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SequenceProfileMoverCAP
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__CPP_ContextIndependentGeometricSolEnergyCreator__
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ChemicalShiftEvaluatorAP
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SequenceProfileMoverCreatorAP
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__CPP_ContextIndependentGeometricSolEnergy__
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ChemicalShiftEvaluatorCAP
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SequenceProfileMoverCreatorCAP
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__CPP_ExactOccludedHbondSolEnergyCreator__
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ChemicalShiftEvaluatorCreator
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SetReturningPackRotamersMoverAP
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__CPP_ExactOccludedHbondSolEnergy__
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ChemicalShiftEvaluatorCreatorAP
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SetReturningPackRotamersMoverCAP
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__CPP_OccludedHbondSolEnergyCreator__
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ChemicalShiftEvaluatorCreatorCAP
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SetTorsionAP
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__CPP_OccludedHbondSolEnergy__
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GDB
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SetTorsionCAP
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__CPP_OccludedHbondSolEnergy_onebodyCreator__
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GDBAP
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SetTorsionCreatorAP
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__CPP_OccludedHbondSolEnergy_onebody__
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GDBCAP
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SetTorsionCreatorCAP
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HackAroEnergy
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__init__()
(in
PDB
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ShakeStructureMoverAP
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HackAroEnergyAP
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PDBAP
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ShakeStructureMoverCAP
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HackAroEnergyCAP
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PDBCAP
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ShearMoverAP
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HackAroEnergyCreator
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RingData
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ShearMoverCAP
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HackAroEnergyCreatorAP
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RingDataAP
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ShearMoverCreatorAP
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HackAroEnergyCreatorCAP
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RingDataCAP
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ShearMoverCreatorCAP
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__CPP_HackAroEnergyCreator__
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Sparta
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ShortBackrubMoverAP
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__CPP_HackAroEnergy__
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SpartaAP
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ShortBackrubMoverCAP
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FadeInterval
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SpartaCAP
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ShortBackrubMoverCreatorAP
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FadeIntervalAP
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__CPP_ChemicalShiftEvaluatorCreator__
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ShortBackrubMoverCreatorCAP
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FadeIntervalCAP
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__CPP_ChemicalShiftEvaluator__
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SingletonBase_T_core_chemical_ChemicalManager_T
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HBEvalTuple
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SS_predictor
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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HBEvalTupleAP
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SS_predictorAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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HBEvalTupleCAP
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SS_predictorCAP
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SmallMoverAP
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(in
HBond
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StepWiseSampleAndScreen
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SmallMoverCAP
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HBondAP
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StepWiseSampleAndScreenAP
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SmallMoverCreatorAP
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HBondCAP
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StepWiseSampleAndScreenCAP
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SmallMoverCreatorCAP
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HBondDatabase
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SingletonBase_T_core_chemical_ChemicalManager_T
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SmoothFragmentMoverAP
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HBondDatabaseAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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SmoothFragmentMoverCAP
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HBondDatabaseCAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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SuperimposeMoverAP
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HBondDerivs
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StepWiseProteinMinimizer
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SuperimposeMoverCAP
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HBondDerivsAP
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StepWiseProteinMinimizerAP
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SuperimposeMoverCreatorAP
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HBondDerivsCAP
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StepWiseProteinMinimizerCAP
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SuperimposeMoverCreatorCAP
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HBondEnergy
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StepWiseProteinPoseSetup
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SwitchChainOrderMoverAP
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HBondEnergyAP
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StepWiseProteinPoseSetupAP
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SwitchChainOrderMoverCAP
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HBondEnergyCAP
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StepWiseProteinPoseSetupCAP
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SwitchChainOrderMoverCreatorAP
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HBondEnergyCreator
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__CPP_StepWiseProteinMinimizer__
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SwitchChainOrderMoverCreatorCAP
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HBondEnergyCreatorAP
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__CPP_StepWiseProteinPoseSetup__
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SwitchResidueTypeSetMoverAP
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HBondEnergyCreatorCAP
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Cluster_Member
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SwitchResidueTypeSetMoverCAP
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HBondOptions
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Cluster_MemberAP
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SwitchResidueTypeSetMoverCreatorAP
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HBondOptionsAP
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Cluster_MemberCAP
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SwitchResidueTypeSetMoverCreatorCAP
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HBondOptionsCAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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TailsScoreMoverAP
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HBondSet
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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TailsScoreMoverCAP
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HBondSetAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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TaskAwareMinMoverAP
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HBondSetCAP
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SlicedPoseWorkingParameters
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TaskAwareMinMoverCAP
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HBondTypeManager
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SlicedPoseWorkingParametersAP
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TaskAwareMinMoverCreatorAP
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HBondTypeManagerAP
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SlicedPoseWorkingParametersCAP
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TaskAwareMinMoverCreatorCAP
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HBondTypeManagerCAP
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StepWiseRNA_Clusterer
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ThermodynamicData
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Polynomial_1d
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StepWiseRNA_ClustererAP
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ThermodynamicDataAP
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Polynomial_1dAP
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StepWiseRNA_ClustererCAP
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ThermodynamicDataCAP
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Polynomial_1dCAP
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StepWiseRNA_PoseSelectionAP
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TorsionDOFMoverAP
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SSWeightParameters
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StepWiseRNA_PoseSelectionCAP
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(in
TorsionDOFMoverCAP
)
__init__()
(in
SSWeightParametersAP
)
__init__()
(in
StepWiseRNA_PoseSetup
)
__instance_size__
(in
TorsionSetMoverAP
)
__init__()
(in
SSWeightParametersCAP
)
__init__()
(in
StepWiseRNA_PoseSetupAP
)
__instance_size__
(in
TorsionSetMoverCAP
)
__init__()
(in
__CPP_HBondEnergyCreator__
)
__init__()
(in
StepWiseRNA_PoseSetupCAP
)
__instance_size__
(in
TumbleAP
)
__init__()
(in
__CPP_HBondEnergy__
)
__init__()
(in
StepWiseWorkingParametersSetup
)
__instance_size__
(in
TumbleCAP
)
__init__()
(in
__CPP_HBondSet__
)
__init__()
(in
StepWiseWorkingParametersSetupAP
)
__instance_size__
(in
TumbleCreatorAP
)
__init__()
(in
HBAtom
)
__init__()
(in
StepWiseWorkingParametersSetupCAP
)
__instance_size__
(in
TumbleCreatorCAP
)
__init__()
(in
HBAtomAP
)
__init__()
(in
__CPP_StepWiseRNA_PoseSetup__
)
__instance_size__
(in
UniformRotationMoverAP
)
__init__()
(in
HBAtomCAP
)
__init__()
(in
__CPP_StepWiseWorkingParametersSetup__
)
__instance_size__
(in
UniformRotationMoverCAP
)
__init__()
(in
HBCPData
)
__init__()
(in
ProteinAtrRepScreenerAP
)
__instance_size__
(in
UniformTranslationMoverAP
)
__init__()
(in
HBCPDataAP
)
__init__()
(in
ProteinAtrRepScreenerCAP
)
__instance_size__
(in
UniformTranslationMoverCAP
)
__init__()
(in
HBCPDataCAP
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
__instance_size__
(in
UserDefinedGroupDiscriminatorAP
)
__init__()
(in
HBCountPairFunction
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
__instance_size__
(in
UserDefinedGroupDiscriminatorCAP
)
__init__()
(in
HBCountPairFunctionAP
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
__instance_size__
(in
VallLookbackFragMoverAP
)
__init__()
(in
HBCountPairFunctionCAP
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
__instance_size__
(in
VallLookbackFragMoverCAP
)
__init__()
(in
__CPP_HBCountPairFunction__
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
__instance_size__
(in
VirtualRootMoverAP
)
__init__()
(in
DDPlookup
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
__instance_size__
(in
VirtualRootMoverCAP
)
__init__()
(in
DDPlookupAP
)
__init__()
(in
StepWiseConnectionSampler
)
__instance_size__
(in
VirtualRootMoverCreatorAP
)
__init__()
(in
DDPlookupCAP
)
__init__()
(in
StepWiseConnectionSamplerAP
)
__instance_size__
(in
VirtualRootMoverCreatorCAP
)
__init__()
(in
DDPscore
)
__init__()
(in
StepWiseConnectionSamplerCAP
)
__instance_size__
(in
WobbleMoverAP
)
__init__()
(in
DDPscoreAP
)
__init__()
(in
StepWiseMinimizer
)
__instance_size__
(in
WobbleMoverCAP
)
__init__()
(in
DDPscoreCAP
)
__init__()
(in
StepWiseMinimizerAP
)
__instance_size__
(in
ddGAP
)
__init__()
(in
DDPscoreCreator
)
__init__()
(in
StepWiseMinimizerCAP
)
__instance_size__
(in
ddGCAP
)
__init__()
(in
DDPscoreCreatorAP
)
__init__()
(in
StepWiseModeler
)
__instance_size__
(in
ddGCreatorAP
)
__init__()
(in
DDPscoreCreatorCAP
)
__init__()
(in
StepWiseModelerAP
)
__instance_size__
(in
ddGCreatorCAP
)
__init__()
(in
__CPP_DDPscoreCreator__
)
__init__()
(in
StepWiseModelerCAP
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__instance_size__
(in
AsymFoldandDockMoveRbJumpMoverAP
)
__init__()
(in
__CPP_DDPscore__
)
__init__()
(in
__CPP_StepWiseConnectionSampler__
)
__instance_size__
(in
AsymFoldandDockMoveRbJumpMoverCAP
)
__init__()
(in
Loop
)
__init__()
(in
__CPP_StepWiseMinimizer__
)
__instance_size__
(in
AsymFoldandDockRbTrialMoverAP
)
__init__()
(in
LoopAP
)
__init__()
(in
__CPP_StepWiseModeler__
)
__instance_size__
(in
AsymFoldandDockRbTrialMoverCAP
)
__init__()
(in
LoopCAP
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
__instance_size__
(in
InitializeByBinsAP
)
__init__()
(in
LoopCloseEnergy
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
__instance_size__
(in
InitializeByBinsCAP
)
__init__()
(in
LoopCloseEnergyAP
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
__instance_size__
(in
InitializeByBinsCreatorAP
)
__init__()
(in
LoopCloseEnergyCAP
)
__init__()
(in
StepWiseClusterer
)
__instance_size__
(in
InitializeByBinsCreatorCAP
)
__init__()
(in
LoopCloseEnergyCreator
)
__init__()
(in
StepWiseClustererAP
)
__instance_size__
(in
PerturbByBinsAP
)
__init__()
(in
LoopCloseEnergyCreatorAP
)
__init__()
(in
StepWiseClustererCAP
)
__instance_size__
(in
PerturbByBinsCAP
)
__init__()
(in
LoopCloseEnergyCreatorCAP
)
__init__()
(in
StepWiseLegacyClusterer
)
__instance_size__
(in
PerturbByBinsCreatorAP
)
__init__()
(in
LoopCycle
)
__init__()
(in
StepWiseLegacyClustererAP
)
__instance_size__
(in
PerturbByBinsCreatorCAP
)
__init__()
(in
LoopCycleAP
)
__init__()
(in
StepWiseLegacyClustererCAP
)
__instance_size__
(in
ChiralMoverAP
)
__init__()
(in
LoopCycleCAP
)
__init__()
(in
StepWiseLegacyClustererSilentBased
)
__instance_size__
(in
ChiralMoverCAP
)
__init__()
(in
LoopGraph
)
__init__()
(in
StepWiseLegacyClustererSilentBasedAP
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
__init__()
(in
LoopGraphAP
)
__init__()
(in
StepWiseLegacyClustererSilentBasedCAP
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
__init__()
(in
LoopGraphCAP
)
__init__()
(in
StepWisePoseAligner
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
__init__()
(in
LoopScoreInfo
)
__init__()
(in
StepWisePoseAlignerAP
)
__instance_size__
(in
HbsPatcherAP
)
__init__()
(in
LoopScoreInfoAP
)
__init__()
(in
StepWisePoseAlignerCAP
)
__instance_size__
(in
HbsPatcherCAP
)
__init__()
(in
LoopScoreInfoCAP
)
__init__()
(in
StepWiseBasicModelerOptions
)
__instance_size__
(in
OopDPuckMinusMoverAP
)
__init__()
(in
__CPP_LoopCloseEnergyCreator__
)
__init__()
(in
StepWiseBasicModelerOptionsAP
)
__instance_size__
(in
OopDPuckMinusMoverCAP
)
__init__()
(in
__CPP_LoopCloseEnergy__
)
__init__()
(in
StepWiseBasicModelerOptionsCAP
)
__instance_size__
(in
OopDPuckPlusMoverAP
)
__init__()
(in
FaMPEnvEnergy
)
__init__()
(in
StepWiseModelerOptions
)
__instance_size__
(in
OopDPuckPlusMoverCAP
)
__init__()
(in
FaMPEnvEnergyAP
)
__init__()
(in
StepWiseModelerOptionsAP
)
__instance_size__
(in
OopMoverAP
)
__init__()
(in
FaMPEnvEnergyCAP
)
__init__()
(in
StepWiseModelerOptionsCAP
)
__instance_size__
(in
OopMoverCAP
)
__init__()
(in
FaMPEnvEnergyCreator
)
__init__()
(in
StepWiseProteinModelerOptions
)
__instance_size__
(in
OopPatcherAP
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__init__()
(in
FaMPEnvEnergyCreatorAP
)
__init__()
(in
StepWiseProteinModelerOptionsAP
)
__instance_size__
(in
OopPatcherCAP
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__init__()
(in
FaMPEnvEnergyCreatorCAP
)
__init__()
(in
StepWiseProteinModelerOptionsCAP
)
__instance_size__
(in
OopPuckMinusMoverAP
)
__init__()
(in
FaMPEnvSmoothEnergy
)
__init__()
(in
StepWiseRNA_ModelerOptions
)
__instance_size__
(in
OopPuckMinusMoverCAP
)
__init__()
(in
FaMPEnvSmoothEnergyAP
)
__init__()
(in
StepWiseRNA_ModelerOptionsAP
)
__instance_size__
(in
OopPuckPlusMoverAP
)
__init__()
(in
FaMPEnvSmoothEnergyCAP
)
__init__()
(in
StepWiseRNA_ModelerOptionsCAP
)
__instance_size__
(in
OopPuckPlusMoverCAP
)
__init__()
(in
FaMPEnvSmoothEnergyCreator
)
__init__()
(in
SideChainCopier
)
__instance_size__
(in
OopRandomPuckMoverAP
)
__init__()
(in
FaMPEnvSmoothEnergyCreatorAP
)
__init__()
(in
SideChainCopierAP
)
__instance_size__
(in
OopRandomPuckMoverCAP
)
__init__()
(in
FaMPEnvSmoothEnergyCreatorCAP
)
__init__()
(in
SideChainCopierCAP
)
__instance_size__
(in
OopRandomSmallMoverAP
)
__init__()
(in
FaMPSolvEnergy
)
__init__()
(in
StepWiseMasterPacker
)
__instance_size__
(in
OopRandomSmallMoverCAP
)
__init__()
(in
FaMPSolvEnergyAP
)
__init__()
(in
StepWiseMasterPackerAP
)
__instance_size__
(in
RationalMonteCarloAP
)
__init__()
(in
FaMPSolvEnergyCAP
)
__init__()
(in
StepWiseMasterPackerCAP
)
__instance_size__
(in
RationalMonteCarloCAP
)
__init__()
(in
FaMPSolvEnergyCreator
)
__init__()
(in
StepWisePacker
)
__instance_size__
(in
JumpRotamerSidechainMoverAP
)
__init__()
(in
FaMPSolvEnergyCreatorAP
)
__init__()
(in
StepWisePackerAP
)
__instance_size__
(in
JumpRotamerSidechainMoverCAP
)
__init__()
(in
FaMPSolvEnergyCreatorCAP
)
__init__()
(in
StepWisePackerCAP
)
__instance_size__
(in
JumpRotamerSidechainMoverCreatorAP
)
__init__()
(in
MPCbetaEnergy
)
__init__()
(in
__CPP_SideChainCopier__
)
__instance_size__
(in
JumpRotamerSidechainMoverCreatorCAP
)
__init__()
(in
MPCbetaEnergyAP
)
__init__()
(in
__CPP_StepWisePacker__
)
__instance_size__
(in
PerturbChiSidechainMoverAP
)
__init__()
(in
MPCbetaEnergyCAP
)
__init__()
(in
PolarHydrogenPacker
)
__instance_size__
(in
PerturbChiSidechainMoverCAP
)
__init__()
(in
MPCbetaEnergyCreator
)
__init__()
(in
PolarHydrogenPackerAP
)
__instance_size__
(in
PerturbChiSidechainMoverCreatorAP
)
__init__()
(in
MPCbetaEnergyCreatorAP
)
__init__()
(in
PolarHydrogenPackerCAP
)
__instance_size__
(in
PerturbChiSidechainMoverCreatorCAP
)
__init__()
(in
MPCbetaEnergyCreatorCAP
)
__init__()
(in
__CPP_PolarHydrogenPacker__
)
__instance_size__
(in
PerturbRotamerSidechainMoverAP
)
__init__()
(in
MPEnvEnergy
)
__init__()
(in
PrecomputedLibraryMover
)
__instance_size__
(in
PerturbRotamerSidechainMoverCAP
)
__init__()
(in
MPEnvEnergyAP
)
__init__()
(in
PrecomputedLibraryMoverAP
)
__instance_size__
(in
PerturbRotamerSidechainMoverCreatorAP
)
__init__()
(in
MPEnvEnergyCAP
)
__init__()
(in
PrecomputedLibraryMoverCAP
)
__instance_size__
(in
PerturbRotamerSidechainMoverCreatorCAP
)
__init__()
(in
MPEnvEnergyCreator
)
__init__()
(in
__CPP_PrecomputedLibraryMover__
)
__instance_size__
(in
SetChiMoverAP
)
__init__()
(in
MPEnvEnergyCreatorAP
)
__init__()
(in
InputStreamWithResidueInfo
)
__instance_size__
(in
SetChiMoverCAP
)
__init__()
(in
MPEnvEnergyCreatorCAP
)
__init__()
(in
InputStreamWithResidueInfoAP
)
__instance_size__
(in
SetChiMoverCreatorAP
)
__init__()
(in
MPLipoEnergy
)
__init__()
(in
InputStreamWithResidueInfoCAP
)
__instance_size__
(in
SetChiMoverCreatorCAP
)
__init__()
(in
MPLipoEnergyAP
)
__init__()
(in
MainChainTorsionSet
)
__instance_size__
(in
SidechainMCMoverAP
)
__init__()
(in
MPLipoEnergyCAP
)
__init__()
(in
MainChainTorsionSetAP
)
__instance_size__
(in
SidechainMCMoverCAP
)
__init__()
(in
MPLipoEnergyCreator
)
__init__()
(in
MainChainTorsionSetCAP
)
__instance_size__
(in
SidechainMCMoverCreatorAP
)
__init__()
(in
MPLipoEnergyCreatorAP
)
__init__()
(in
StepWiseProteinBackboneSampler
)
__instance_size__
(in
SidechainMCMoverCreatorCAP
)
__init__()
(in
MPLipoEnergyCreatorCAP
)
__init__()
(in
StepWiseProteinBackboneSamplerAP
)
__instance_size__
(in
SidechainMoverAP
)
__init__()
(in
MPNonHelixPenalty
)
__init__()
(in
StepWiseProteinBackboneSamplerCAP
)
__instance_size__
(in
SidechainMoverBaseAP
)
__init__()
(in
MPNonHelixPenaltyAP
)
__init__()
(in
__CPP_StepWiseProteinBackboneSampler__
)
__instance_size__
(in
SidechainMoverBaseCAP
)
__init__()
(in
MPNonHelixPenaltyCAP
)
__init__()
(in
ProteinAtrRepChecker
)
__instance_size__
(in
SidechainMoverCAP
)
__init__()
(in
MPNonHelixPenaltyCreator
)
__init__()
(in
ProteinAtrRepCheckerAP
)
__instance_size__
(in
SidechainMoverCreatorAP
)
__init__()
(in
MPNonHelixPenaltyCreatorAP
)
__init__()
(in
ProteinAtrRepCheckerCAP
)
__instance_size__
(in
SidechainMoverCreatorCAP
)
__init__()
(in
MPNonHelixPenaltyCreatorCAP
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
__instance_size__
(in
DetectSymmetryAP
)
__init__()
(in
MPPairEnergy
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
__instance_size__
(in
DetectSymmetryCAP
)
__init__()
(in
MPPairEnergyAP
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
__instance_size__
(in
DetectSymmetryMoverCreatorAP
)
__init__()
(in
MPPairEnergyCAP
)
__init__()
(in
StepWiseProteinCCD_Closer
)
__instance_size__
(in
DetectSymmetryMoverCreatorCAP
)
__init__()
(in
MPPairEnergyCreator
)
__init__()
(in
StepWiseProteinCCD_CloserAP
)
__instance_size__
(in
ExtractAsymmetricPoseMoverAP
)
__init__()
(in
MPPairEnergyCreatorAP
)
__init__()
(in
StepWiseProteinCCD_CloserCAP
)
__instance_size__
(in
ExtractAsymmetricPoseMoverCAP
)
__init__()
(in
MPPairEnergyCreatorCAP
)
__init__()
(in
StepWiseProteinCCD_MultiPoseCloser
)
__instance_size__
(in
ExtractAsymmetricPoseMoverCreatorAP
)
__init__()
(in
MPTMProjPenalty
)
__init__()
(in
StepWiseProteinCCD_MultiPoseCloserAP
)
__instance_size__
(in
ExtractAsymmetricPoseMoverCreatorCAP
)
__init__()
(in
MPTMProjPenaltyAP
)
__init__()
(in
StepWiseProteinCCD_MultiPoseCloserCAP
)
__instance_size__
(in
ExtractAsymmetricUnitMoverAP
)
__init__()
(in
MPTMProjPenaltyCAP
)
__init__()
(in
StepWiseProteinKIC_LoopBridger
)
__instance_size__
(in
ExtractAsymmetricUnitMoverCAP
)
__init__()
(in
MPTMProjPenaltyCreator
)
__init__()
(in
StepWiseProteinKIC_LoopBridgerAP
)
__instance_size__
(in
ExtractAsymmetricUnitMoverCreatorAP
)
__init__()
(in
MPTMProjPenaltyCreatorAP
)
__init__()
(in
StepWiseProteinKIC_LoopBridgerCAP
)
__instance_size__
(in
ExtractAsymmetricUnitMoverCreatorCAP
)
__init__()
(in
MPTMProjPenaltyCreatorCAP
)
__init__()
(in
__CPP_StepWiseProteinCCD_Closer__
)
__instance_size__
(in
FaSymDockingSlideTogetherAP
)
__init__()
(in
MPTerminiPenalty
)
__init__()
(in
__CPP_StepWiseProteinCCD_MultiPoseCloser__
)
__instance_size__
(in
FaSymDockingSlideTogetherCAP
)
__init__()
(in
MPTerminiPenaltyAP
)
__init__()
(in
__CPP_StepWiseProteinKIC_LoopBridger__
)
__instance_size__
(in
NCSResMappingAP
)
__init__()
(in
MPTerminiPenaltyCAP
)
__init__()
(in
Combine_Tags_Info
)
__instance_size__
(in
NCSResMappingCAP
)
__init__()
(in
MPTerminiPenaltyCreator
)
__init__()
(in
Combine_Tags_InfoAP
)
__instance_size__
(in
OrderedSequentialSymmetrySliderAP
)
__init__()
(in
MPTerminiPenaltyCreatorAP
)
__init__()
(in
Combine_Tags_InfoCAP
)
__instance_size__
(in
OrderedSequentialSymmetrySliderCAP
)
__init__()
(in
MPTerminiPenaltyCreatorCAP
)
__init__()
(in
Filterer_Count
)
__instance_size__
(in
RandomSymmetrySliderAP
)
__init__()
(in
MembraneData
)
__init__()
(in
Filterer_CountAP
)
__instance_size__
(in
RandomSymmetrySliderCAP
)
__init__()
(in
MembraneDataAP
)
__init__()
(in
Filterer_CountCAP
)
__instance_size__
(in
SequentialSymmetrySliderAP
)
__init__()
(in
MembraneDataCAP
)
__init__()
(in
InternalWorkingResidueParameter
)
__instance_size__
(in
SequentialSymmetrySliderCAP
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
__init__()
(in
InternalWorkingResidueParameterAP
)
__instance_size__
(in
SetupForSymmetryMoverAP
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
__init__()
(in
InternalWorkingResidueParameterCAP
)
__instance_size__
(in
SetupForSymmetryMoverCAP
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
__init__()
(in
Jump_point
)
__instance_size__
(in
SetupForSymmetryMoverCreatorAP
)
__init__()
(in
__CPP_FaMPEnvEnergyCreator__
)
__init__()
(in
Jump_pointAP
)
__instance_size__
(in
SetupForSymmetryMoverCreatorCAP
)
__init__()
(in
__CPP_FaMPEnvEnergy__
)
__init__()
(in
Jump_pointCAP
)
__instance_size__
(in
SetupNCSMoverAP
)
__init__()
(in
__CPP_FaMPEnvSmoothEnergyCreator__
)
__init__()
(in
Residue_info
)
__instance_size__
(in
SetupNCSMoverCAP
)
__init__()
(in
__CPP_FaMPEnvSmoothEnergy__
)
__init__()
(in
Residue_infoAP
)
__instance_size__
(in
SetupNCSMoverCreatorAP
)
__init__()
(in
__CPP_FaMPSolvEnergyCreator__
)
__init__()
(in
Residue_infoCAP
)
__instance_size__
(in
SetupNCSMoverCreatorCAP
)
__init__()
(in
__CPP_FaMPSolvEnergy__
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
__instance_size__
(in
SymDockingInitialPerturbationAP
)
__init__()
(in
__CPP_MPCbetaEnergyCreator__
)
__init__()
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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StepWiseRNA_CombineLongLoopFilterer
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StepWiseRNA_CombineLongLoopFiltererAP
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SymEnergyCutRotamerTrialsMoverAP
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StepWiseRNA_CombineLongLoopFiltererCAP
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SymEnergyCutRotamerTrialsMoverCAP
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StepWiseRNA_CountStruct
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SymMinMoverAP
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StepWiseRNA_CountStructAP
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SymMinMoverCAP
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StepWiseRNA_CountStructCAP
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SymMinMoverCreatorAP
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Torsion_Info
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SymMinMoverCreatorCAP
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Torsion_InfoAP
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SymPackRotamersMoverAP
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output_data_structCAP
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SymRotamerTrialsMoverAP
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BulgeApplyMover
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BBDepCartBondedParameters
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BulgeApplyMoverAP
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BBIndepCartBondedParametersAP
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BurialEnergyAP
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Atom_Bin
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ANN
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CenPairEnergy
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CenPairEnergyAP
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PDBCAP
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CenPairEnergyCAP
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RingData
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CenPairEnergyCreator
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RingDataAP
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CenPairEnergyCreatorAP
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RingDataCAP
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Sparta
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CenRotEnvEnergy
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RNA_HelixAssemblerAP
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SpartaAP
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CenRotEnvEnergyAP
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CenRotEnvEnergyCAP
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SS_predictor
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CenRotEnvEnergyCreator
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O2PrimePacker
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SS_predictorAP
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CenRotEnvEnergyCreatorAP
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O2PrimePackerAP
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CenRotPairEnergy
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SingletonBase_T_core_chemical_ChemicalManager_T
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CenRotPairEnergyAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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ChainbreakEnergy
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PhosphateMove
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Cluster_Member
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PhosphateMover
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Cluster_MemberAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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SugarInstantiateMover
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SugarInstantiateMoverAP
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GoapEnergyCreator
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GoapRsdType
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StepWiseSamplerComb
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StepWiseSamplerOneValue
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VirtualSugarSamplerAP
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MMBondAngleEnergy
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InputStreamStepWiseSamplerAP
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VirtualSugarSamplerCAP
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MMBondAngleEnergyAP
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InputStreamStepWiseSamplerCAP
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VirtualSugarSamplerFromStringListAP
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MMBondAngleEnergyCAP
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__CPP_InputStreamStepWiseSampler__
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VirtualSugarSamplerFromStringListCAP
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MMBondAngleEnergyCreator
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ProteinBetaAntiParallelStepWiseSampler
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StepWiseBasicWorkingParameters
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MMBondAngleEnergyCreatorAP
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ProteinBetaAntiParallelStepWiseSamplerAP
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StepWiseBasicWorkingParametersAP
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MMBondAngleEnergyCreatorCAP
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ProteinBetaAntiParallelStepWiseSamplerCAP
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StepWiseBasicWorkingParametersCAP
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MMBondLengthEnergy
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ProteinFragmentStepWiseSampler
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StepWiseWorkingParametersAP
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MMBondLengthEnergyAP
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ProteinFragmentStepWiseSamplerAP
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StepWiseWorkingParametersCAP
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MMBondLengthEnergyCAP
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ProteinFragmentStepWiseSamplerCAP
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StepWiseMonteCarloAP
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MMBondLengthEnergyCreator
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ProteinMainChainStepWiseSampler
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StepWiseMonteCarloCAP
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MMBondLengthEnergyCreatorAP
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ProteinMainChainStepWiseSamplerAP
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AddMoverAP
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MMBondLengthEnergyCreatorCAP
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ProteinMainChainStepWiseSamplerCAP
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AddMoverCAP
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MMLJEnergyInter
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AddOrDeleteMoverAP
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MMLJEnergyInterAP
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AddOrDeleteMoverCAP
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MMLJEnergyInterCAP
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Attachment
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MMLJEnergyInterCreator
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EulerAngles
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AttachmentAP
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MMLJEnergyInterCreatorAP
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EulerAnglesAP
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AttachmentCAP
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MMLJEnergyInterCreatorCAP
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EulerAnglesCAP
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DeleteMoverAP
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MMLJEnergyIntra
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RigidBodyStepWiseSampler
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DeleteMoverCAP
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MMLJEnergyIntraAP
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RigidBodyStepWiseSamplerAP
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FromScratchMoverAP
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MMLJEnergyIntraCAP
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RigidBodyStepWiseSamplerCAP
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FromScratchMoverCAP
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MMLJEnergyIntraCreator
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RigidBodyStepWiseSamplerValueRange
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ResampleMoverAP
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MMLJEnergyIntraCreatorAP
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RigidBodyStepWiseSamplerValueRangeAP
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ResampleMoverCAP
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MMLJEnergyIntraCreatorCAP
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RigidBodyStepWiseSamplerValueRangeCAP
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StepWiseMasterMoverAP
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MMTorsionEnergy
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RigidBodyStepWiseSamplerWithResidueAlternatives
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StepWiseMasterMoverCAP
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MMTorsionEnergyAP
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RigidBodyStepWiseSamplerWithResidueAlternativesAP
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StepWiseMove
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MMTorsionEnergyCAP
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RigidBodyStepWiseSamplerWithResidueAlternativesCAP
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StepWiseMoveAP
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MMTorsionEnergyCreator
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RigidBodyStepWiseSamplerWithResidueList
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StepWiseMoveCAP
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MMTorsionEnergyCreatorAP
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RigidBodyStepWiseSamplerWithResidueListAP
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StepWiseMoveSelector
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MMTorsionEnergyCreatorCAP
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RigidBodyStepWiseSamplerWithResidueListCAP
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StepWiseMoveSelectorAP
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MembraneCbetaEnergy
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SingletonBase_T_core_chemical_ChemicalManager_T
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StepWiseMoveSelectorCAP
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MembraneCbetaEnergyAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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TransientCutpointHandler
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MembraneCbetaEnergyCAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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TransientCutpointHandlerAP
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MembraneCbetaEnergyCreator
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TransientCutpointHandlerCAP
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MembraneCbetaEnergyCreatorAP
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StepWiseMonteCarloOptionsAP
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MembraneCbetaEnergyCreatorCAP
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StepWiseMonteCarloOptionsCAP
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MembraneCenPairEnergy
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RNA_ChiStepWiseSampler
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RNA_AddDeleteMonteCarloAP
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MembraneCenPairEnergyAP
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RNA_ChiStepWiseSamplerAP
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RNA_AddDeleteMonteCarloCAP
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MembraneCenPairEnergyCAP
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RNA_ChiStepWiseSamplerCAP
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RNA_O2PrimeMoverAP
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MembraneCenPairEnergyCreator
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RNA_KIC_Sampler
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RNA_O2PrimeMoverCAP
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MembraneCenPairEnergyCreatorAP
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RNA_KIC_SamplerAP
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RNA_TorsionMoverAP
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MembraneCenPairEnergyCreatorCAP
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RNA_KIC_SamplerCAP
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RNA_TorsionMoverCAP
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MembraneEnvEnergy
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RNA_KinematicCloser
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SubMotifLibrary
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MembraneEnvEnergyAP
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RNA_KinematicCloserAP
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SubMotifLibraryAP
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MembraneEnvEnergyCAP
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RNA_KinematicCloserCAP
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SubMotifLibraryCAP
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MembraneEnvEnergyCreator
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RNA_MC_MultiSuite
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StepWiseBasicOptionsAP
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MembraneEnvEnergyCreatorAP
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RNA_MC_MultiSuiteAP
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StepWiseBasicOptionsCAP
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MembraneEnvEnergyCreatorCAP
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RNA_MC_MultiSuiteCAP
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JumpStepWiseSamplerAP
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MembraneEnvPenalties
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RNA_MC_Sugar
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JumpStepWiseSamplerCAP
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MembraneEnvPenaltiesAP
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RNA_MC_SugarAP
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MC_Comb
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MembraneEnvPenaltiesCAP
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RNA_MC_SugarCAP
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MC_CombAP
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MembraneEnvPenaltiesCreator
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RNA_MC_Suite
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MC_CombCAP
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MembraneEnvPenaltiesCreatorAP
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RNA_MC_SuiteAP
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MC_OneTorsion
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MembraneEnvPenaltiesCreatorCAP
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RNA_MC_SuiteCAP
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MC_OneTorsionAP
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MembraneEnvSmoothEnergy
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RNA_NucleosideStepWiseSampler
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MC_OneTorsionCAP
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MembraneEnvSmoothEnergyAP
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RNA_NucleosideStepWiseSamplerAP
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MC_StepWiseSamplerAP
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MembraneEnvSmoothEnergyCAP
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RNA_NucleosideStepWiseSamplerCAP
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MC_StepWiseSamplerCAP
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MembraneEnvSmoothEnergyCreator
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RNA_SugarStepWiseSampler
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NoOpStepWiseSamplerAP
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MembraneEnvSmoothEnergyCreatorAP
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RNA_SugarStepWiseSamplerAP
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NoOpStepWiseSamplerCAP
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MembraneEnvSmoothEnergyCreatorCAP
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RNA_SugarStepWiseSamplerCAP
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StepWiseSamplerAny
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MembraneLipo
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RNA_SuiteStepWiseSampler
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StepWiseSamplerAnyAP
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MembraneLipoAP
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RNA_SuiteStepWiseSamplerAP
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StepWiseSamplerAnyCAP
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MembraneLipoCAP
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RNA_SuiteStepWiseSamplerCAP
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StepWiseSamplerBaseAP
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MembraneLipoCreator
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__CPP_RNA_ChiStepWiseSampler__
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StepWiseSamplerBaseCAP
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MembraneLipoCreatorAP
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__CPP_RNA_KinematicCloser__
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StepWiseSamplerComb
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MembraneLipoCreatorCAP
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StepWiseSamplerCombAP
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MissingEnergy
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StepWiseSamplerCombCAP
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MissingEnergyAP
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StepWiseSamplerOneTorsionAP
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MissingEnergyCAP
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StepWiseSamplerOneTorsionCAP
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MissingEnergyCreator
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StepWiseSamplerOneValueAP
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MissingEnergyCreatorAP
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RNA_TorsionScreener
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StepWiseSamplerOneValueCAP
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MissingEnergyCreatorCAP
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RNA_TorsionScreenerAP
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StepWiseSamplerOneValueCombAP
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NMerPSSMEnergy
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RNA_TorsionScreenerCAP
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StepWiseSamplerOneValueCombCAP
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NMerPSSMEnergyAP
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AlignRMSD_Screener
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StepWiseSamplerSized
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NMerPSSMEnergyCAP
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AlignRMSD_ScreenerAP
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StepWiseSamplerSizedAP
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NMerPSSMEnergyCreator
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AlignRMSD_ScreenerCAP
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StepWiseSamplerSizedAnyAP
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NMerPSSMEnergyCreatorAP
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AnchorSugarScreener
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StepWiseSamplerSizedAnyCAP
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NMerPSSMEnergyCreatorCAP
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AnchorSugarScreenerAP
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StepWiseSamplerSizedCAP
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NMerRefEnergy
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AnchorSugarScreenerCAP
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StepWiseSamplerSizedCombAP
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NMerRefEnergyAP
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BaseBinMapUpdater
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StepWiseSamplerSizedCombCAP
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NMerRefEnergyCAP
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BaseBinMapUpdaterAP
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CopyDofStepWiseSamplerAP
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NMerRefEnergyCreator
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BaseBinMapUpdaterCAP
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CopyDofStepWiseSamplerCAP
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NMerRefEnergyCreatorAP
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BaseCentroidScreener
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ResidueAlternativeSet
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NMerRefEnergyCreatorCAP
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BaseCentroidScreenerAP
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ResidueAlternativeSetAP
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NMerSVMEnergy
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BaseCentroidScreenerCAP
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ResidueAlternativeSetCAP
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NMerSVMEnergyAP
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BulgeApplier
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ResidueAlternativeStepWiseSamplerAP
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NMerSVMEnergyCAP
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BulgeApplierAP
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ResidueAlternativeStepWiseSamplerCAP
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NMerSVMEnergyCreator
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BulgeApplierCAP
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ResidueAlternativeStepWiseSamplerCombAP
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NMerSVMEnergyCreatorAP
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CentroidDistanceScreener
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ResidueAlternativeStepWiseSamplerCombCAP
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NMerSVMEnergyCreatorCAP
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CentroidDistanceScreenerAP
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ResidueListStepWiseSamplerAP
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OmegaTetherEnergy
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CentroidDistanceScreenerCAP
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ResidueListStepWiseSamplerCAP
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OmegaTetherEnergyAP
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FastForwardToNextResidueAlternative
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SingletonBase_T_core_chemical_ChemicalManager_T
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OmegaTetherEnergyCAP
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FastForwardToNextResidueAlternativeAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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OmegaTetherEnergyCreator
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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OmegaTetherEnergyCreatorAP
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FastForwardToNextRigidBody
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InputStreamStepWiseSamplerAP
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OmegaTetherEnergyCreatorCAP
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FastForwardToNextRigidBodyAP
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InputStreamStepWiseSamplerCAP
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OneBodyEnergy
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FastForwardToNextRigidBodyCAP
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ProteinBetaAntiParallelStepWiseSamplerAP
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OneBodyEnergyAP
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IntegrationTestBreaker
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ProteinBetaAntiParallelStepWiseSamplerCAP
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OneBodyEnergyCAP
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IntegrationTestBreakerAP
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ProteinFragmentStepWiseSamplerAP
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OtherPoseEnergy
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IntegrationTestBreakerCAP
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ProteinFragmentStepWiseSamplerCAP
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OtherPoseEnergyAP
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O2PrimeScreener
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ProteinMainChainStepWiseSamplerAP
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OtherPoseEnergyCAP
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O2PrimeScreenerAP
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ProteinMainChainStepWiseSamplerCAP
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OtherPoseEnergyCreator
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O2PrimeScreenerCAP
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EulerAngles
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OtherPoseEnergyCreatorAP
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PackScreener
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EulerAnglesAP
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OtherPoseEnergyCreatorCAP
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PackScreenerAP
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EulerAnglesCAP
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PBLifetimeCache
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PackScreenerCAP
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RigidBodyStepWiseSamplerAP
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PBLifetimeCacheAP
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PartitionContactScreener
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RigidBodyStepWiseSamplerCAP
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PBLifetimeCacheCAP
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PartitionContactScreenerAP
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RigidBodyStepWiseSamplerValueRange
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P_AA_Energy
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RigidBodyStepWiseSamplerValueRangeAP
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P_AA_EnergyAP
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PhosphateScreener
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RigidBodyStepWiseSamplerValueRangeCAP
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P_AA_EnergyCAP
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PhosphateScreenerAP
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RigidBodyStepWiseSamplerWithResidueAlternativesAP
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P_AA_EnergyCreator
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PhosphateScreenerCAP
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RigidBodyStepWiseSamplerWithResidueAlternativesCAP
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P_AA_EnergyCreatorAP
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PoseSelectionScreener
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RigidBodyStepWiseSamplerWithResidueListAP
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P_AA_EnergyCreatorCAP
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PoseSelectionScreenerAP
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RigidBodyStepWiseSamplerWithResidueListCAP
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P_AA_pp_Energy
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PoseSelectionScreenerCAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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P_AA_pp_EnergyAP
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ProteinCCD_ClosureScreener
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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P_AA_pp_EnergyCAP
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ProteinCCD_ClosureScreenerAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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P_AA_pp_EnergyCreator
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ProteinCCD_ClosureScreenerCAP
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RNA_ChiStepWiseSamplerAP
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P_AA_pp_EnergyCreatorAP
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RNA_ChainClosableGeometryResidueBasedScreener
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RNA_ChiStepWiseSamplerCAP
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P_AA_pp_EnergyCreatorCAP
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RNA_ChainClosableGeometryResidueBasedScreenerAP
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RNA_KIC_Sampler
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PackStatEnergy
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RNA_ChainClosableGeometryResidueBasedScreenerCAP
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RNA_KIC_SamplerAP
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PackStatEnergyAP
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RNA_ChainClosableGeometryScreener
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RNA_KIC_SamplerCAP
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PackStatEnergyCAP
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RNA_ChainClosableGeometryScreenerAP
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RNA_KinematicCloserAP
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PackStatEnergyCreator
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RNA_ChainClosableGeometryScreenerCAP
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RNA_KinematicCloserCAP
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PackStatEnergyCreatorAP
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RNA_ChainClosableGeometryStubBasedScreener
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RNA_MC_MultiSuiteAP
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PackStatEnergyCreatorCAP
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RNA_ChainClosableGeometryStubBasedScreenerAP
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RNA_MC_MultiSuiteCAP
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PairEnergy
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RNA_ChainClosableGeometryStubBasedScreenerCAP
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RNA_MC_Sugar
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PairEnergyAP
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RNA_ChainClosureScreener
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RNA_MC_SugarAP
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PairEnergyCAP
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RNA_ChainClosureScreenerAP
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RNA_MC_SugarCAP
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PairEnergyCreator
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RNA_ChainClosureScreenerCAP
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RNA_MC_SuiteAP
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PairEnergyCreatorAP
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ResidueContactScreener
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RNA_MC_SuiteCAP
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PairEnergyCreatorCAP
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ResidueContactScreenerAP
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RNA_NucleosideStepWiseSamplerAP
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PeptideBondEnergy
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ResidueContactScreenerCAP
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RNA_NucleosideStepWiseSamplerCAP
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PeptideBondEnergyAP
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SampleApplier
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RNA_SugarStepWiseSamplerAP
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PeptideBondEnergyCAP
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SampleApplierAP
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RNA_SugarStepWiseSamplerCAP
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PeptideBondEnergyCreator
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SampleApplierCAP
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RNA_SuiteStepWiseSamplerAP
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PeptideBondEnergyCreatorAP
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Scorer
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RNA_SuiteStepWiseSamplerCAP
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PeptideBondEnergyCreatorCAP
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ScorerAP
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RNA_TorsionScreener
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PoissonBoltzmannEnergy
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ScorerCAP
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RNA_TorsionScreenerAP
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PoissonBoltzmannEnergyAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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RNA_TorsionScreenerCAP
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PoissonBoltzmannEnergyCAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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AlignRMSD_ScreenerAP
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PoissonBoltzmannEnergyCreator
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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AlignRMSD_ScreenerCAP
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PoissonBoltzmannEnergyCreatorAP
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StepWiseResiduePairScreener
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AnchorSugarScreenerAP
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PoissonBoltzmannEnergyCreatorCAP
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StepWiseResiduePairScreenerAP
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AnchorSugarScreenerCAP
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ProClosureEnergy
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StepWiseResiduePairScreenerCAP
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BaseBinMapUpdaterAP
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ProClosureEnergyAP
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StepWiseScreener
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BaseBinMapUpdaterCAP
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ProClosureEnergyCAP
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StepWiseScreenerAP
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BaseCentroidScreenerAP
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ProClosureEnergyCreator
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StepWiseScreenerCAP
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BaseCentroidScreenerCAP
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ProClosureEnergyCreatorAP
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StubApplier
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BulgeApplierAP
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ProClosureEnergyCreatorCAP
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StubApplierAP
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BulgeApplierCAP
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ProQ_Energy
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StubApplierCAP
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CentroidDistanceScreenerAP
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ProQ_EnergyAP
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StubDistanceScreener
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CentroidDistanceScreenerCAP
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ProQ_EnergyCAP
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StubDistanceScreenerAP
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FastForwardToNextResidueAlternativeAP
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ProQ_EnergyCreator
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StubDistanceScreenerCAP
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FastForwardToNextResidueAlternativeCAP
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ProQ_EnergyCreatorAP
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SugarInstantiator
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FastForwardToNextRigidBodyAP
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ProQ_EnergyCreatorCAP
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SugarInstantiatorAP
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FastForwardToNextRigidBodyCAP
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PyEnergyMethodRegistrator
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SugarInstantiatorCAP
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IntegrationTestBreakerAP
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PyEnergyMethodRegistratorAP
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TagDefinition
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IntegrationTestBreakerCAP
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PyEnergyMethodRegistratorCAP
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TagDefinitionAP
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O2PrimeScreenerAP
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RG_Energy_Fast
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TagDefinitionCAP
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O2PrimeScreenerCAP
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RG_Energy_FastAP
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VDW_BinScreener
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PackScreenerAP
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RG_Energy_FastCAP
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VDW_BinScreenerAP
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PackScreenerCAP
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RG_Energy_FastCreator
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VDW_BinScreenerCAP
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PartitionContactScreenerAP
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RG_Energy_FastCreatorAP
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__CPP_AlignRMSD_Screener__
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PartitionContactScreenerCAP
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RG_Energy_FastCreatorCAP
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__CPP_AnchorSugarScreener__
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PhosphateScreenerAP
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RG_LocalEnergy
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__CPP_BaseBinMapUpdater__
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PhosphateScreenerCAP
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RG_LocalEnergyAP
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__CPP_BaseCentroidScreener__
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PoseSelectionScreenerAP
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RG_LocalEnergyCAP
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__CPP_BulgeApplier__
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PoseSelectionScreenerCAP
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RG_LocalEnergyCreator
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__CPP_CentroidDistanceScreener__
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ProteinCCD_ClosureScreenerAP
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RG_LocalEnergyCreatorAP
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__CPP_FastForwardToNextResidueAlternative__
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ProteinCCD_ClosureScreenerCAP
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RG_LocalEnergyCreatorCAP
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__CPP_FastForwardToNextRigidBody__
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RNA_ChainClosableGeometryResidueBasedScreenerAP
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RG_Local_MinData
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__CPP_IntegrationTestBreaker__
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RNA_ChainClosableGeometryResidueBasedScreenerCAP
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RG_Local_MinDataAP
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__CPP_O2PrimeScreener__
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RNA_ChainClosableGeometryScreenerAP
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RG_Local_MinDataCAP
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__CPP_PackScreener__
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RNA_ChainClosableGeometryScreenerCAP
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RG_MinData
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__CPP_PartitionContactScreener__
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RNA_ChainClosableGeometryStubBasedScreenerAP
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RG_MinDataAP
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__CPP_PhosphateScreener__
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RNA_ChainClosableGeometryStubBasedScreenerCAP
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RG_MinDataCAP
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__CPP_PoseSelectionScreener__
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RNA_ChainClosureScreenerAP
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RMS_Energy
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__CPP_ProteinCCD_ClosureScreener__
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RNA_ChainClosureScreenerCAP
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RMS_EnergyAP
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__CPP_RNA_ChainClosableGeometryResidueBasedScreener__
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ResidueContactScreenerAP
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RMS_EnergyCAP
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__CPP_RNA_ChainClosableGeometryScreener__
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ResidueContactScreenerCAP
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RMS_EnergyCreator
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__CPP_RNA_ChainClosableGeometryStubBasedScreener__
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SampleApplierAP
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RMS_EnergyCreatorAP
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__CPP_RNA_ChainClosureScreener__
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SampleApplierCAP
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RMS_EnergyCreatorCAP
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__CPP_ResidueContactScreener__
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ScorerAP
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Rama2BOffsetEnergy
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__CPP_SampleApplier__
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ScorerCAP
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Rama2BOffsetEnergyAP
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__CPP_Scorer__
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SingletonBase_T_core_chemical_ChemicalManager_T
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Rama2BOffsetEnergyCAP
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__CPP_StepWiseResiduePairScreener__
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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Rama2BOffsetEnergyCreator
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__CPP_StepWiseScreener__
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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Rama2BOffsetEnergyCreatorAP
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__CPP_StubApplier__
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StepWiseResiduePairScreenerAP
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Rama2BOffsetEnergyCreatorCAP
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__CPP_StubDistanceScreener__
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StepWiseResiduePairScreenerCAP
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RamachandranEnergy
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__CPP_SugarInstantiator__
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StepWiseScreener
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RamachandranEnergy2B
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__CPP_TagDefinition__
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StepWiseScreenerAP
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RamachandranEnergy2BAP
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__CPP_VDW_BinScreener__
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StepWiseScreenerCAP
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RamachandranEnergy2BCAP
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StepWiseCSA_JobDistributor
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StubApplierAP
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RamachandranEnergy2BCreator
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StepWiseCSA_JobDistributorAP
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StubApplierCAP
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RamachandranEnergy2BCreatorAP
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StepWiseCSA_JobDistributorCAP
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StubDistanceScreenerAP
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RamachandranEnergy2BCreatorCAP
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StepWiseJobDistributor
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StubDistanceScreenerCAP
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RamachandranEnergyAP
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StepWiseJobDistributorAP
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SugarInstantiatorAP
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RamachandranEnergyCAP
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StepWiseJobDistributorCAP
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SugarInstantiatorCAP
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RamachandranEnergyCreator
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StepWiseMonteCarloJobDistributor
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TagDefinitionAP
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RamachandranEnergyCreatorAP
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StepWiseMonteCarloJobDistributorAP
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TagDefinitionCAP
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RamachandranEnergyCreatorCAP
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StepWiseMonteCarloJobDistributorCAP
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VDW_BinScreenerAP
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ReferenceEnergy
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__CPP_StepWiseCSA_JobDistributor__
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VDW_BinScreenerCAP
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ReferenceEnergyAP
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__CPP_StepWiseJobDistributor__
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StepWiseCSA_JobDistributorAP
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ReferenceEnergyCAP
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__CPP_StepWiseMonteCarloJobDistributor__
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StepWiseCSA_JobDistributorCAP
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ReferenceEnergyCreator
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CentroidRelaxMover
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StepWiseJobDistributorAP
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ReferenceEnergyCreatorAP
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CentroidRelaxMoverAP
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StepWiseJobDistributorCAP
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ReferenceEnergyCreatorCAP
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CentroidRelaxMoverCAP
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StepWiseMonteCarloJobDistributorAP
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ReferenceEnergyNoncanonical
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FullatomRelaxMover
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StepWiseMonteCarloJobDistributorCAP
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ReferenceEnergyNoncanonicalAP
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FullatomRelaxMoverAP
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CentroidRelaxMoverAP
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ReferenceEnergyNoncanonicalCAP
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FullatomRelaxMoverCAP
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CentroidRelaxMoverCAP
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ReferenceEnergyNoncanonicalCreator
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SurfaceDockingProtocol
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FullatomRelaxMoverAP
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ReferenceEnergyNoncanonicalCreatorAP
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SurfaceDockingProtocolAP
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FullatomRelaxMoverCAP
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ReferenceEnergyNoncanonicalCreatorCAP
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SurfaceDockingProtocolCAP
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SurfaceDockingProtocolAP
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ResidualDipolarCouplingEnergy
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SurfaceOrientMover
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SurfaceDockingProtocolCAP
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ResidualDipolarCouplingEnergyAP
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SurfaceOrientMoverAP
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SurfaceOrientMoverAP
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ResidualDipolarCouplingEnergyCAP
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SurfaceOrientMoverCAP
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SurfaceOrientMoverCAP
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ResidualDipolarCouplingEnergyCreator
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SurfaceParameters
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SurfaceParameters
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ResidualDipolarCouplingEnergyCreatorAP
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SurfaceParametersAP
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SurfaceParametersAP
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ResidualDipolarCouplingEnergyCreatorCAP
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SurfaceParametersCAP
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SurfaceParametersCAP
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ResidualDipolarCouplingEnergy_Rohl
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SurfaceVectorFallbackConfiguration
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SurfaceVectorFallbackConfigurationAP
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ResidualDipolarCouplingEnergy_RohlAP
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SurfaceVectorFallbackConfigurationAP
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SurfaceVectorFallbackConfigurationCAP
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ResidualDipolarCouplingEnergy_RohlCAP
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SurfaceVectorFallbackConfigurationCAP
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SurfaceVectorFallbackConfigurationCreatorAP
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ResidualDipolarCouplingEnergy_RohlCreator
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SurfaceVectorFallbackConfigurationCreator
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SurfaceVectorFallbackConfigurationCreatorCAP
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ResidualDipolarCouplingEnergy_RohlCreatorAP
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SurfaceVectorFallbackConfigurationCreatorAP
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SurfaceVectorLoaderAP
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ResidualDipolarCouplingEnergy_RohlCreatorCAP
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SurfaceVectorFallbackConfigurationCreatorCAP
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SurfaceVectorLoaderCAP
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ResidueCartBondedParameters
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SurfaceVectorLoader
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SurfaceVectorLoaderCreatorAP
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ResidueCartBondedParametersAP
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SurfaceVectorLoaderAP
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SurfaceVectorLoaderCreatorCAP
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ResidueCartBondedParametersCAP
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SurfaceVectorLoaderCAP
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SurfaceVectorOptionsAP
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SA_Energy
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SurfaceVectorLoaderCreator
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SurfaceVectorOptionsCAP
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SA_EnergyAP
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SurfaceVectorLoaderCreatorAP
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SurfaceVectorOptionsCreatorAP
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SA_EnergyCAP
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SurfaceVectorLoaderCreatorCAP
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SurfaceVectorOptionsCreatorCAP
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SA_EnergyCreator
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SurfaceVectorOptions
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SymDockBaseProtocolAP
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SA_EnergyCreatorAP
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SurfaceVectorOptionsAP
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SymDockBaseProtocolCAP
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SA_EnergyCreatorCAP
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SurfaceVectorOptionsCAP
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SymDockProtocolAP
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SecondaryStructureEnergy
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SurfaceVectorOptionsCreator
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SymDockProtocolCAP
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SecondaryStructureEnergyAP
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SurfaceVectorOptionsCreatorAP
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SymDockProtocolCreatorAP
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SecondaryStructureEnergyCAP
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SurfaceVectorOptionsCreatorCAP
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SymDockProtocolCreatorCAP
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SecondaryStructureEnergyCreator
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__CPP_CentroidRelaxMover__
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SymDockingHiResAP
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SecondaryStructureEnergyCreatorAP
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__CPP_FullatomRelaxMover__
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SymDockingHiResCAP
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SecondaryStructureEnergyCreatorCAP
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pHEnergyAP
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pHEnergyCAP
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pHEnergyCreator
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pHEnergyCreatorAP
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EnergiesData
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DFIRE_Potential
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MMBondAngleResidueTypeParamAP
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MMBondAngleResidueTypeParamCAP
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MMBondAngleScoreAP
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MMBondLengthLibrary
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MMBondLengthLibraryAP
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PiPiCalculatorCAP
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MMLJScoreCAP
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MMTorsionLibrary
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RotamerBoltzCalculator
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LimitAromaChi2OperationCreatorAP
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RotamerBoltzCalculatorAP
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MotifHashManager
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DatabaseThreadCreator
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RestrictInterGroupVectorOperationCreatorCAP
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NVscoreCreator
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DatabaseThreadCreatorAP
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RestrictNativeResiduesOperationAP
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NVscoreCreatorAP
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DatabaseThreadCreatorCAP
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RestrictNativeResiduesOperationCAP
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NVscoreCreatorCAP
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DesignAroundOperation
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RestrictNativeResiduesOperationCreatorAP
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__CPP_NVscoreCreator__
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DesignAroundOperationAP
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RestrictNativeResiduesOperationCreatorCAP
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__CPP_NVscore__
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DesignAroundOperationCAP
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RestrictNonSurfaceToRepackingOperationAP
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OrbitalsLookup
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DesignAroundOperationCreator
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RestrictNonSurfaceToRepackingOperationCAP
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OrbitalsLookupAP
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DesignAroundOperationCreatorAP
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RestrictNonSurfaceToRepackingOperationCreatorAP
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OrbitalsLookupCAP
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DesignAroundOperationCreatorCAP
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RestrictNonSurfaceToRepackingOperationCreatorCAP
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OrbitalsScore
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DockingNoRepack1
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RestrictOperationsBaseAP
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OrbitalsScoreAP
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DockingNoRepack1AP
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RestrictOperationsBaseCAP
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OrbitalsScoreCAP
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DockingNoRepack1CAP
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RestrictResiduesToRepackingOperationAP
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OrbitalsScoreCreator
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DockingNoRepack2
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RestrictResiduesToRepackingOperationCAP
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OrbitalsScoreCreatorAP
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DockingNoRepack2AP
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RestrictResiduesToRepackingOperationCreatorAP
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OrbitalsScoreCreatorCAP
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DockingNoRepack2CAP
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RestrictResiduesToRepackingOperationCreatorCAP
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OrbitalsStatistics
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DsspDesignOperation
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RestrictToAlignedSegmentsOperationAP
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OrbitalsStatisticsAP
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DsspDesignOperationAP
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RestrictToAlignedSegmentsOperationCAP
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OrbitalsStatisticsCAP
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DsspDesignOperationCAP
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RestrictToAlignedSegmentsOperationCreatorAP
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__CPP_OrbitalsScoreCreator__
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DsspDesignOperationCreator
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RestrictToAlignedSegmentsOperationCreatorCAP
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__CPP_OrbitalsScore__
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DsspDesignOperationCreatorAP
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RestrictToCDRH3LoopAP
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Ball
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DsspDesignOperationCreatorCAP
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RestrictToCDRH3LoopCAP
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BallAP
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ImportUnboundRotamersOperation
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RestrictToCDRH3LoopCreatorAP
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BallCAP
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ImportUnboundRotamersOperationAP
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RestrictToCDRH3LoopCreatorCAP
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HolesEnergy
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ImportUnboundRotamersOperationCAP
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RestrictToInterface
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HolesEnergyAP
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ImportUnboundRotamersOperationCreator
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RestrictToInterfaceAP
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HolesEnergyCAP
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ImportUnboundRotamersOperationCreatorAP
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RestrictToInterfaceCAP
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HolesEnergyCreator
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ImportUnboundRotamersOperationCreatorCAP
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RestrictToInterfaceCreatorAP
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HolesEnergyCreatorAP
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InteractingRotamerExplosion
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RestrictToInterfaceCreatorCAP
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HolesEnergyCreatorCAP
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InteractingRotamerExplosionAP
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RestrictToInterfaceOperationAP
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HolesEnergyRes
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InteractingRotamerExplosionCAP
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RestrictToInterfaceOperationCAP
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HolesEnergyResAP
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InteractingRotamerExplosionCreator
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RestrictToInterfaceOperationCreatorAP
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HolesEnergyResCAP
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InteractingRotamerExplosionCreatorAP
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RestrictToInterfaceOperationCreatorCAP
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HolesParams
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InteractingRotamerExplosionCreatorCAP
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RestrictToInterfaceVectorOperation
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HolesParamsAP
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InterfaceTaskOperation
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RestrictToInterfaceVectorOperationAP
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HolesParamsCAP
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InterfaceTaskOperationAP
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RestrictToInterfaceVectorOperationCAP
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HolesParamsRes
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InterfaceTaskOperationCAP
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RestrictToInterfaceVectorOperationCreatorAP
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HolesParamsResAP
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JointSequenceOperation
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RestrictToInterfaceVectorOperationCreatorCAP
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HolesParamsResCAP
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JointSequenceOperationAP
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RestrictToLoopsAP
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HolesResult
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JointSequenceOperationCAP
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RestrictToLoopsAndNeighborsAP
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HolesResultAP
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JointSequenceOperationCreator
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RestrictToLoopsAndNeighborsCAP
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HolesResultCAP
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JointSequenceOperationCreatorAP
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RestrictToLoopsAndNeighborsCreatorAP
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PoseBalls
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JointSequenceOperationCreatorCAP
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RestrictToLoopsAndNeighborsCreatorCAP
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PoseBallsAP
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LimitAromaChi2Operation
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RestrictToLoopsCAP
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PoseBallsCAP
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LimitAromaChi2OperationAP
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RestrictToLoopsCreatorAP
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PoseBallsLite
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LimitAromaChi2OperationCAP
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RestrictToLoopsCreatorCAP
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PoseBallsLiteAP
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LimitAromaChi2OperationCreator
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RestrictToMoveMapChiOperationAP
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PoseBallsLiteCAP
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LimitAromaChi2OperationCreatorAP
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RestrictToMoveMapChiOperationCAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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LimitAromaChi2OperationCreatorCAP
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RestrictToNeighborhoodOperationAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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LimitAromaChi2_RotamerSetOperation
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RestrictToNeighborhoodOperationCAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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LimitAromaChi2_RotamerSetOperationAP
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RestrictToNeighborhoodOperationCreatorAP
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SurfEnergy
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LimitAromaChi2_RotamerSetOperationCAP
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RestrictToNeighborhoodOperationCreatorCAP
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SurfEnergyAP
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LinkResidues
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RestrictToTerminiOperationAP
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SurfEnergyCAP
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LinkResiduesAP
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RestrictToTerminiOperationCAP
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SurfEnergyCreator
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LinkResiduesCAP
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RestrictToTerminiOperationCreatorAP
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SurfEnergyCreatorAP
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LinkResiduesCreator
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RestrictToTerminiOperationCreatorCAP
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SurfEnergyCreatorCAP
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LinkResiduesCreatorAP
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RetrieveStoredTaskOperationAP
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SurfVol
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LinkResiduesCreatorCAP
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RetrieveStoredTaskOperationCAP
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SurfVolAP
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ModifyAnnealer
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RetrieveStoredTaskOperationCreatorAP
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SurfVolCAP
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ModifyAnnealerAP
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RetrieveStoredTaskOperationCreatorCAP
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SurfVolDeriv
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ModifyAnnealerCAP
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STMStoredTaskAP
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SurfVolDerivAP
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ModifyAnnealerCreator
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STMStoredTaskCAP
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SurfVolDerivCAP
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ModifyAnnealerCreatorAP
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SelectByDeltaScoreOperationAP
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SurfVolEnergy
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ModifyAnnealerCreatorCAP
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SelectByDeltaScoreOperationCAP
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SurfVolEnergyAP
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MutationSetDesignOperation
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SelectByDeltaScoreOperationCreatorAP
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SurfVolEnergyCAP
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MutationSetDesignOperationAP
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SelectByDeltaScoreOperationCreatorCAP
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SurfVolEnergyCreator
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MutationSetDesignOperationCAP
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SelectByDensityFitOperationAP
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SurfVolEnergyCreatorAP
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PreventChainFromRepackingOperation
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SelectByDensityFitOperationCAP
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SurfVolEnergyCreatorCAP
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PreventChainFromRepackingOperationAP
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SelectByDensityFitOperationCreatorAP
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__CPP_HolesEnergyCreator__
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PreventChainFromRepackingOperationCAP
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SelectByDensityFitOperationCreatorCAP
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__CPP_HolesEnergyRes__
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PreventChainFromRepackingOperationCreator
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SelectBySASAOperationAP
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__CPP_HolesEnergy__
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PreventChainFromRepackingOperationCreatorAP
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SelectBySASAOperationCAP
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__CPP_SurfEnergyCreator__
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PreventChainFromRepackingOperationCreatorCAP
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SelectBySASAOperationCreatorAP
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__CPP_SurfEnergy__
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PreventResiduesFromRepackingOperation
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SelectBySASAOperationCreatorCAP
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__CPP_SurfVolEnergyCreator__
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PreventResiduesFromRepackingOperationAP
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SelectResiduesWithinChainOperationAP
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__CPP_SurfVolEnergy__
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PreventResiduesFromRepackingOperationCAP
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SelectResiduesWithinChainOperationCAP
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Accumulator
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PreventResiduesFromRepackingOperationCreator
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SelectResiduesWithinChainOperationCreatorAP
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AccumulatorAP
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PreventResiduesFromRepackingOperationCreatorAP
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SelectResiduesWithinChainOperationCreatorCAP
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AccumulatorCAP
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PreventResiduesFromRepackingOperationCreatorCAP
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SeqprofConsensusOperationAP
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AreaAccumulator
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ProteinCore
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SeqprofConsensusOperationCAP
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AreaAccumulatorAP
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ProteinCoreAP
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SeqprofConsensusOperationCreatorAP
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AreaAccumulatorCAP
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ProteinCoreCAP
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SeqprofConsensusOperationCreatorCAP
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Array2D
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ProteinCoreFilterCreator
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SetIGTypeOperationAP
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Array2DAP
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ProteinCoreFilterCreatorAP
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SetIGTypeOperationCAP
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Array2DCAP
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ProteinCoreFilterCreatorCAP
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SetIGTypeOperationCreatorAP
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AtomRadiusMap
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ProteinInterfaceDesignOperation
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SetIGTypeOperationCreatorCAP
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AtomRadiusMapAP
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ProteinInterfaceDesignOperationAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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AtomRadiusMapCAP
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ProteinInterfaceDesignOperationCAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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CavityBall
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ProteinInterfaceDesignOperationCreator
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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CavityBallAP
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ProteinInterfaceDesignOperationCreatorAP
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StoreCombinedStoredTasksMoverAP
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CavityBallCAP
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ProteinInterfaceDesignOperationCreatorCAP
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StoreCombinedStoredTasksMoverCAP
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CavityBallCluster
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ReadResfileFromDB
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StoreCombinedStoredTasksMoverCreatorAP
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CavityBallClusterAP
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ReadResfileFromDBAP
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StoreCombinedStoredTasksMoverCreatorCAP
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CavityBallClusterCAP
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ReadResfileFromDBCAP
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StoreCompoundTaskMoverAP
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Circle
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ReadResfileFromDBCreator
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StoreCompoundTaskMoverCAP
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CircleAP
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ReadResfileFromDBCreatorAP
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StoreCompoundTaskMoverCreatorAP
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CircleCAP
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ReadResfileFromDBCreatorCAP
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StoreCompoundTaskMoverCreatorCAP
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Event
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ResidueProbDesignOperation
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StoreTaskMoverAP
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EventAP
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ResidueProbDesignOperationAP
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StoreTaskMoverCAP
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EventCAP
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ResidueProbDesignOperationCAP
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StoreTaskMoverCreatorAP
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LR_AtomData
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RestrictByCalculatorsOperation
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StoreTaskMoverCreatorCAP
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LR_AtomDataAP
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RestrictByCalculatorsOperationAP
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ThreadSequenceOperationAP
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LR_AtomDataCAP
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RestrictByCalculatorsOperationCAP
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ThreadSequenceOperationCAP
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LR_MP_AtomData
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RestrictByCalculatorsOperationCreator
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ThreadSequenceOperationCreatorAP
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LR_MP_AtomDataAP
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RestrictByCalculatorsOperationCreatorAP
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ThreadSequenceOperationCreatorCAP
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LR_MP_AtomDataCAP
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RestrictByCalculatorsOperationCreatorCAP
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DensityScoringClaimerAP
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LeeRichards
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RestrictChainToRepackingOperation
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DensityScoringClaimerCAP
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LeeRichardsAP
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RestrictChainToRepackingOperationAP
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FoldandDockClaimerAP
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LeeRichardsCAP
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RestrictChainToRepackingOperationCAP
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FoldandDockClaimerCAP
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MultiProbePerSphereAccumulator
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RestrictChainToRepackingOperationCreator
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MembraneTopologyClaimerAP
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MultiProbePerSphereAccumulatorAP
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RestrictChainToRepackingOperationCreatorAP
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MembraneTopologyClaimerCAP
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MultiProbePerSphereAccumulatorCAP
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RestrictChainToRepackingOperationCreatorCAP
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RigidBodyRandomTMHMoverAP
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MultiProbePoseAccumulator
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RestrictConservedLowDdgOperation
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RigidBodyRandomTMHMoverCAP
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MultiProbePoseAccumulatorAP
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RestrictConservedLowDdgOperationAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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MultiProbePoseAccumulatorCAP
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RestrictConservedLowDdgOperationCAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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Octree2D
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RestrictConservedLowDdgOperationCreator
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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Octree2DAP
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RestrictConservedLowDdgOperationCreatorAP
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SingletonBase_T_protocols_jumping_StandardDisulfPairingLibrary_T
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Octree2DCAP
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RestrictConservedLowDdgOperationCreatorCAP
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SingletonBase_T_protocols_jumping_StandardDisulfPairingLibrary_TAP
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OrderCBC
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RestrictIdentitiesAtAlignedPositionsOperation
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SingletonBase_T_protocols_jumping_StandardDisulfPairingLibrary_TCAP
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OrderCBCAP
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RestrictIdentitiesAtAlignedPositionsOperationAP
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SingletonBase_T_protocols_jumping_StandardPairingLibrary_T
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OrderCBCCAP
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RestrictIdentitiesAtAlignedPositionsOperationCAP
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SingletonBase_T_protocols_jumping_StandardPairingLibrary_TAP
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PackingScore
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RestrictIdentitiesAtAlignedPositionsOperationCreator
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SingletonBase_T_protocols_jumping_StandardPairingLibrary_TCAP
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PackingScoreAP
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RestrictIdentitiesAtAlignedPositionsOperationCreatorAP
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PackingScoreCAP
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PackingScoreResData
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RestrictIdentitiesOperation
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PackingScoreResDataAP
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TopologyClaimerAP
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PackingScoreResDataCAP
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RestrictIdentitiesOperationCAP
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TopologyClaimerCAP
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RestrictIdentitiesOperationCreator
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BBClaimAP
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PerSphereAccumulatorAP
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RestrictIdentitiesOperationCreatorAP
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BBClaimCAP
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PerSphereAccumulatorCAP
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RestrictIdentitiesOperationCreatorCAP
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CutClaimAP
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Point
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RestrictInterGroupVectorOperation
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CutClaimCAP
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PointAP
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DofClaim
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PointCAP
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DofClaimAP
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PointPair
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DofClaimCAP
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JumpClaimAP
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PosePackDataAP
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PosePackDataCAP
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SequenceClaimAP
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SasaOptions
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SymmetryClaimAP
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SasaResultCAP
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SimplePDBAP
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RestrictNonSurfaceToRepackingOperationCreatorAP
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RestrictResiduesToRepackingOperationCreatorAP
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RestrictResiduesToRepackingOperationCreatorCAP
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DbTrajectoryReader
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Sphere
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DbTrajectoryReaderAP
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SphereAP
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SphereCAP
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DbTrajectoryWriter
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DbTrajectoryWriterAP
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RestrictToAlignedSegmentsOperationCreatorAP
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RG_Energy_RNA
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UnfoldedStateEnergyCalculatorJobDistributor
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RG_Energy_RNAAP
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RestrictToInterface
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UnfoldedStateEnergyCalculatorJobDistributorAP
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VIP_ReportAP
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RNA_CentroidInfoAP
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DatabaseEntryWorkUnitAP
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RNA_EnergyMethodOptions
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SilentStructStore
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vec1_vec1_uint
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vector0_T_float_std_allocator_T_float_T__T
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vector0_T_int_std_allocator_T_int_T__T
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vector0_T_int_std_allocator_T_int_T__TAP
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ChemicalShiftData
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ChemicalShiftDataCAP
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RNA_CS_parameters
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RNA_CS_parametersAP
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RNA_CS_parametersCAP
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RNA_CS_residue_parameters
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EXCN_BadInputCAP
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RNA_DMS_Potential
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__CPP_RestrictResiduesToRepackingOperationCreator__
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EXCN_BaseAP
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RNA_DMS_PotentialAP
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EXCN_BaseCAP
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RNA_DMS_PotentialCAP
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EXCN_ExceptionAP
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RNA_DataBackboneEnergy
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EXCN_ExceptionCAP
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RNA_DataBackboneEnergyAP
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RNA_DataBackboneEnergyCAP
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EXCN_FileNotFoundAP
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RNA_DataBackboneEnergyCreator
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EXCN_FileNotFoundCAP
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RNA_DataBackboneEnergyCreatorAP
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EXCN_IOAP
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RNA_DataBackboneEnergyCreatorCAP
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EXCN_IOCAP
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RNA_DataInfo
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EXCN_JD2FailureAP
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RNA_DataInfoAP
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EXCN_JD2FailureCAP
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RNA_DataInfoCAP
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EXCN_KeyErrorAP
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RNA_Datum
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__CPP_RestrictToLoopsCreator__
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EXCN_KeyErrorCAP
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RNA_DatumAP
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__CPP_RestrictToLoops__
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EXCN_Msg_Exception
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RNA_DatumCAP
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__CPP_RestrictToMoveMapChiOperation__
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EXCN_Msg_ExceptionAP
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RNA_Reactivity
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EXCN_Msg_ExceptionCAP
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RNA_ReactivityAP
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EXCN_NullPointerAP
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RNA_ReactivityCAP
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EXCN_NullPointerCAP
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__CPP_RestrictToTerminiOperation__
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EXCN_RangeErrorAP
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EXCN_RangeErrorCAP
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EXCN_RosettaScriptsOptionAP
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__CPP_STMStoredTask__
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EXCN_RosettaScriptsOptionCAP
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LeGrandSasa
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__CPP_SelectByDeltaScoreOperationCreator__
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FileName
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LeGrandSasaAP
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__CPP_SelectByDeltaScoreOperation__
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FileNameAP
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LeGrandSasaCAP
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__CPP_SelectByDensityFitOperationCreator__
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FileNameCAP
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SasaCalc
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__CPP_SelectByDensityFitOperation__
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PathName
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SasaCalcAP
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__CPP_SelectBySASAOperationCreator__
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PathNameAP
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SasaCalcCAP
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__CPP_SelectBySASAOperation__
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PathNameCAP
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SasaMethod
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__CPP_SelectResiduesWithinChainOperationCreator__
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EXCN_Stop_BFSAP
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SasaMethodAP
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__CPP_SelectResiduesWithinChainOperation__
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EXCN_Stop_BFSCAP
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SasaMethodCAP
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__CPP_SeqprofConsensusOperationCreator__
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null_bfs_prune_visitor
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SingletonBase_T_core_chemical_ChemicalManager_T
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__CPP_SeqprofConsensusOperation__
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null_bfs_prune_visitorAP
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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__CPP_SetIGTypeOperationCreator__
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null_bfs_prune_visitorCAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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__CPP_SetIGTypeOperation__
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Svm_node_rosetta
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__CPP_LeGrandSasa__
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__CPP_StoreCombinedStoredTasksMoverCreator__
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Svm_node_rosettaAP
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__CPP_SasaMethod__
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__CPP_StoreCombinedStoredTasksMover__
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Svm_node_rosettaCAP
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DistanceHistogram
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__CPP_StoreCompoundTaskMoverCreator__
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Svm_rosetta
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DistanceHistogramAP
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__CPP_StoreCompoundTaskMover__
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Svm_rosettaAP
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DistanceHistogramCAP
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__CPP_StoreTaskMoverCreator__
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Svm_rosettaCAP
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FastSAXSEnergy
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__CPP_StoreTaskMover__
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LuaIterator
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FastSAXSEnergyAP
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__CPP_ThreadSequenceOperationCreator__
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LuaIteratorAP
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FastSAXSEnergyCAP
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__CPP_ThreadSequenceOperation__
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LuaIteratorCAP
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FastSAXSEnergyCreator
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DensityScoringClaimer
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LuaObject
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FastSAXSEnergyCreatorAP
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DensityScoringClaimerAP
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LuaObjectAP
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FastSAXSEnergyCreatorCAP
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DensityScoringClaimerCAP
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LuaObjectCAP
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FormFactor
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FoldandDockClaimer
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Base
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FormFactorAP
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FoldandDockClaimerAP
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BaseAP
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FormFactorCAP
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FoldandDockClaimerCAP
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BaseCAP
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FormFactorManager
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MembraneTopologyClaimer
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PyExitCallback
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FormFactorManagerAP
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MembraneTopologyClaimerAP
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PyExitCallbackAP
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FormFactorManagerCAP
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MembraneTopologyClaimerCAP
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PyExitCallbackCAP
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SAXSEnergy
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RigidBodyRandomTMHMoverAP
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Value
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SAXSEnergyAP
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RigidBodyRandomTMHMoverCAP
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ValueAP
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SAXSEnergyCAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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ValueCAP
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SAXSEnergyCEN
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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Link
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SAXSEnergyCENAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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LinkAP
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SAXSEnergyCENCAP
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SingletonBase_T_protocols_jumping_StandardDisulfPairingLibrary_T
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LinkCAP
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SAXSEnergyCreator
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SingletonBase_T_protocols_jumping_StandardDisulfPairingLibrary_TAP
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LinkUnit
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SAXSEnergyCreatorAP
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SingletonBase_T_protocols_jumping_StandardDisulfPairingLibrary_TCAP
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LinkUnitAP
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SAXSEnergyCreatorCAP
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SingletonBase_T_protocols_jumping_StandardPairingLibrary_T
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LinkUnitCAP
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SAXSEnergyCreatorCEN
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SingletonBase_T_protocols_jumping_StandardPairingLibrary_TAP
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DatabaseMode
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SAXSEnergyCreatorCENAP
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SingletonBase_T_protocols_jumping_StandardPairingLibrary_TCAP
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DatabaseModeAP
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SAXSEnergyCreatorCENCAP
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SymmetryClaimer
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DatabaseModeCAP
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SAXSEnergyCreatorFA
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SymmetryClaimerAP
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TransactionMode
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SAXSEnergyCreatorFAAP
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SymmetryClaimerCAP
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TransactionModeAP
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SAXSEnergyCreatorFACAP
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TopologyClaimer
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TransactionModeCAP
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SAXSEnergyFA
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TopologyClaimerAP
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Tag
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SAXSEnergyFAAP
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TopologyClaimerCAP
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TagAP
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SAXSEnergyFACAP
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__CPP_FoldandDockClaimer__
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TagCAP
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SinXOverX
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__CPP_MembraneTopologyClaimer__
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xyzMatrix_Real
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SinXOverXAP
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__CPP_TopologyClaimer__
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xyzMatrix_SSize
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SinXOverXCAP
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BBClaim
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xyzMatrix_Size
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SingletonBase_T_core_chemical_ChemicalManager_T
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BBClaimAP
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xyzMatrix_double
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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BBClaimCAP
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xyzMatrix_float
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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CutClaim
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xyzTriple_Real
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SingletonBase_T_core_scoring_saxs_SinXOverX_T
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CutClaimAP
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xyzTriple_SSize
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SingletonBase_T_core_scoring_saxs_SinXOverX_TAP
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CutClaimCAP
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xyzTriple_Size
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SingletonBase_T_core_scoring_saxs_SinXOverX_TCAP
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DofClaim
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xyzTriple_double
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__CPP_FastSAXSEnergyCreator__
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DofClaimAP
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xyzTriple_float
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__CPP_FastSAXSEnergy__
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DofClaimCAP
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xyzVector_Real
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__CPP_SAXSEnergyCreatorCEN__
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JumpClaim
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xyzVector_SSize
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__CPP_SAXSEnergyCreatorFA__
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JumpClaimAP
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xyzVector_Size
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__CPP_SAXSEnergyCreator__
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JumpClaimCAP
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xyzVector_double
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__CPP_SAXSEnergy__
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LegacyRootClaim
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xyzVector_float
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Atom
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LegacyRootClaimAP
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map_Real_Real
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AtomAP
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LegacyRootClaimCAP
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map_Real_string
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AtomCAP
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SequenceClaim
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map_SSize_SSize
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MolecularSurfaceCalculator
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SequenceClaimAP
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map_SSize_string
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MolecularSurfaceCalculatorAP
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SequenceClaimCAP
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MolecularSurfaceCalculatorCAP
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SingletonBase_T_core_chemical_ChemicalManager_T
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map_Size_Size
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ShapeComplementarityCalculator
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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map_Size_SymDof
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ShapeComplementarityCalculatorAP
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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map_Size_string
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ShapeComplementarityCalculatorCAP
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SymmetryClaim
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map_char_pair_Size_Size
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ShapeComplementarityCalculatorException
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SymmetryClaimAP
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ShapeComplementarityCalculatorExceptionAP
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SymmetryClaimCAP
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ShapeComplementarityCalculatorExceptionCAP
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__CPP_BBClaim__
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map_string_Real
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__CPP_CutClaim__
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map_string_int
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vector1_AtomID
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__CPP_SymmetryClaim__
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vector1_Pose
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vector1_PoseOP
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vector1_ScoreType
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vector1_pair_SSize_string
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SurfaceEnergies
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LargeFragWeightCAP
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SurfaceEnergiesAP
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SmallFragWeight
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vector1_pair_Size_SymDof
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SurfaceEnergiesCAP
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SmallFragWeightAP
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vector1_pair_Size_string
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SmallFragWeightCAP
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__CPP_symECreator__
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vector1_pair_int_int
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SmoothFragWeightCAP
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symECreatorAP
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__CPP_AbinitioMoverWeight__
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vector1_pair_string_SSize
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symECreatorCAP
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vector1_pair_string_Size
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symEnergy
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__CPP_LargeFragWeight__
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vector1_pair_string_int
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symEnergyAP
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__CPP_SmallFragWeight__
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vector1_pair_string_string
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symEnergyCAP
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__CPP_SmoothFragWeight__
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vector1_xyzVector_Real
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SingletonBase_T_utility_Inline_File_Provider_TCAP
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std_vector_char
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SequenceCreatorCAP
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StringStream
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std_vector_double
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SequenceFactory
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__CPP_Inline_File_Provider_Hook__
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std_vector_float
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SequenceFactoryAP
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__CPP_Show__
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std_vector_int
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SequenceFactoryCAP
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__utility_SingletonBase_utility_Inline_File_Provider__
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std_vector_string
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SequenceProfile
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heap
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std_vector_uint
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SequenceProfileAP
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heapAP
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vec1_vec1_Real
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SequenceProfileCAP
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heapCAP
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vec1_vec1_SSize
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SequenceProfileCreator
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history_queue_struct
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vec1_vec1_Size
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SequenceProfileCreatorAP
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history_queue_structAP
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vec1_vec1_bool
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SequenceProfileCreatorCAP
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history_queue_structCAP
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vec1_vec1_char
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SimpleScoringScheme
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istream
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vec1_vec1_double
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SimpleScoringSchemeAP
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ostream
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vec1_vec1_float
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SimpleScoringSchemeCAP
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recent_history_queue
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vec1_vec1_int
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SimpleSequenceCreator
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recent_history_queueAP
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vec1_vec1_string
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SimpleSequenceCreatorAP
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recent_history_queueCAP
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vec1_vec1_uint
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SimpleSequenceCreatorCAP
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set_Real
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vector1_Real
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SingletonBase_T_core_sequence_SequenceFactory_T
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set_SSize
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vector1_SSize
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SingletonBase_T_core_sequence_SequenceFactory_TAP
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set_Size
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vector1_Size
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SingletonBase_T_core_sequence_SequenceFactory_TCAP
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set_char
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vector1_bool
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__CPP_Aligner__
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set_double
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vector1_char
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__CPP_ChemicalShiftScoringScheme__
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set_float
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vector1_double
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__CPP_ChemicalShiftSequenceCreator__
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set_int
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vector1_float
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__CPP_ChemicalShiftSequence__
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set_string
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vector1_int
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__CPP_CompassScoringScheme__
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set_uint
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vector1_string
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__CPP_CompositeScoringScheme__
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std_istream
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vector1_uint
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__CPP_CompositeSequenceCreator__
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std_ostream
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xyzMatrix_Real
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__CPP_CompositeSequence__
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std_vector_Real
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xyzMatrix_SSize
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__CPP_DPScoringScheme__
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std_vector_SSize
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xyzMatrix_Size
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__CPP_L1ScoringScheme__
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std_vector_Size
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xyzMatrix_double
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__CPP_MCAligner__
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std_vector_char
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xyzMatrix_float
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__CPP_MatrixScoringScheme__
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std_vector_double
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xyzTriple_Real
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__CPP_NWAligner__
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std_vector_float
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xyzTriple_SSize
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__CPP_PairScoringScheme__
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std_vector_int
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xyzTriple_Size
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__CPP_ProfSimScoringScheme__
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std_vector_string
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xyzTriple_double
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__CPP_SWAligner__
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std_vector_uint
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xyzTriple_float
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__CPP_ScoringScheme__
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subset_mapping
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xyzVector_Real
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__CPP_SequenceCouplingCreator__
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subset_mappingAP
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xyzVector_SSize
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__CPP_SequenceCoupling__
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subset_mappingCAP
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xyzVector_Size
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__CPP_SequenceCreator__
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utility_vector1_boolAP
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xyzVector_double
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__CPP_SequenceProfileCreator__
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xyzVector_float
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__CPP_SequenceProfile__
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vec1_vec1_Real
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ConstFrameIterator
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__CPP_Sequence__
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vec1_vec1_SSize
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FragID_Iterator
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__CPP_SimpleScoringScheme__
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vec1_vec1_Size
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FrameIterator
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__CPP_SimpleSequenceCreator__
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vec1_vec1_bool
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EdgeListConstIterator
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ChainbreakUtil
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vec1_vec1_char
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EdgeListIterator
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ChainbreakUtilAP
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vec1_vec1_double
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EMapVector
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ChainbreakUtilCAP
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vec1_vec1_float
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HomogeneousTransform_T_double_T
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SingletonBase_T_core_chemical_ChemicalManager_T
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vec1_vec1_int
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Quaternion_Real
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SingletonBase_T_core_chemical_ChemicalManager_TAP
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vec1_vec1_string
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Quaternion_double
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SingletonBase_T_core_chemical_ChemicalManager_TCAP
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vec1_vec1_uint
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Quaternion_float
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AgglomerativeHierarchicalClusterer
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vector0_T_float_std_allocator_T_float_T__T
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xyzMatrix_Real
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AgglomerativeHierarchicalClustererAP
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vector0_T_float_std_allocator_T_float_T__TAP
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xyzMatrix_SSize
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AgglomerativeHierarchicalClustererCAP
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vector0_T_float_std_allocator_T_float_T__TCAP
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xyzMatrix_Size
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AverageLinkClusterer
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vector0_T_int_std_allocator_T_int_T__T
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xyzMatrix_double
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AverageLinkClustererAP
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vector0_T_int_std_allocator_T_int_T__TAP
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xyzMatrix_float
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AverageLinkClustererCAP
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vector0_T_int_std_allocator_T_int_T__TCAP
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xyzTriple_Real
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Calculator
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vector0_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T_std_allocator_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T__T__T
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xyzTriple_SSize
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CalculatorAP
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vector0_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T_std_allocator_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T__T__TAP
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xyzTriple_Size
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CalculatorCAP
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vector0_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T_std_allocator_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T__T__TCAP
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xyzTriple_double
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ClusterOptions
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vector0_T_utility_vector0_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T__std_allocator_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T__T__T_std_allocator_T_utility_vector0_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T__std_allocator_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T__T__T__T__T
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xyzTriple_float
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ClusterOptionsAP
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vector0_T_utility_vector0_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T__std_allocator_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T__T__T_std_allocator_T_utility_vector0_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T__std_allocator_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T__T__T__T__TAP
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xyzVector_Real
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ClusterOptionsCAP
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vector0_T_utility_vector0_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T__std_allocator_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T__T__T_std_allocator_T_utility_vector0_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T__std_allocator_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T__T__T__T__TCAP
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xyzVector_SSize
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ClusteringTreeNode
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__init__()
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vector1_Real
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xyzVector_Size
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ClusteringTreeNodeAP
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__init__()
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vector1_SSize
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xyzVector_double
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ClusteringTreeNodeCAP
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__init__()
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vector1_Size
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__mul__()
(in
xyzVector_float
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__init__()
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CompleteLinkClusterer
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__init__()
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vector1_T_utility_history_queue_struct_std_allocator_T_utility_history_queue_struct_T__T
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__mul__()
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Rose
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CompleteLinkClustererAP
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__init__()
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vector1_T_utility_history_queue_struct_std_allocator_T_utility_history_queue_struct_T__TAP
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LuaIterator
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CompleteLinkClustererCAP
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__init__()
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vector1_T_utility_history_queue_struct_std_allocator_T_utility_history_queue_struct_T__TCAP
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Quaternion_Real
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EulerAngles_Real
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__init__()
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vector1_bool
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(in
Quaternion_double
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EulerAngles_RealAP
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__init__()
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vector1_char
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Quaternion_float
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EulerAngles_RealCAP
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__init__()
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vector1_double
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xyzMatrix_Real
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EulerAngles_double
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__init__()
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vector1_float
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xyzMatrix_SSize
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EulerAngles_doubleAP
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vector1_int
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xyzMatrix_Size
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EulerAngles_doubleCAP
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vector1_string
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xyzMatrix_double
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EulerAngles_float
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vector1_uint
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xyzMatrix_float
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EulerAngles_floatAP
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vectorL_IndexSelector_T_false_T
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xyzTriple_Real
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EulerAngles_floatCAP
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vectorL_IndexSelector_T_false_TAP
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xyzTriple_SSize
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HomogeneousTransform_Double
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vectorL_IndexSelector_T_false_TCAP
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xyzTriple_Size
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HomogeneousTransform_DoubleAP
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vectorL_IndexSelector_T_true_T
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xyzTriple_double
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HomogeneousTransform_DoubleCAP
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vectorL_IndexSelector_T_true_TAP
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xyzTriple_float
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HomogeneousTransform_T_double_T
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vectorL_IndexSelector_T_true_TCAP
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xyzVector_Real
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HomogeneousTransform_T_double_TAP
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vectorL_ZeroSelector_T_false_T
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xyzVector_SSize
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HomogeneousTransform_T_double_TCAP
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vectorL_ZeroSelector_T_false_TAP
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xyzVector_Size
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IOTraits_T_double_T
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vectorL_ZeroSelector_T_false_TCAP
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xyzVector_double
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IOTraits_T_double_TAP
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EXCN_BadInput
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xyzVector_float
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IOTraits_T_double_TCAP
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EXCN_BadInputAP
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xyzTriple_Real
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IOTraits_T_float_T
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EXCN_BadInputCAP
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xyzTriple_SSize
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IOTraits_T_float_TAP
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EXCN_Base
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xyzTriple_Size
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IOTraits_T_float_TCAP
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EXCN_BaseAP
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xyzTriple_double
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IOTraits_T_int_T
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EXCN_BaseCAP
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xyzTriple_float
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IOTraits_T_int_TAP
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EXCN_ExceptionAP
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xyzVector_Real
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IOTraits_T_int_TCAP
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EXCN_ExceptionCAP
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xyzVector_SSize
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IOTraits_T_long_double_T
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EXCN_FileNotFound
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xyzVector_Size
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IOTraits_T_long_double_TAP
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EXCN_FileNotFoundAP
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xyzVector_double
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IOTraits_T_long_double_TCAP
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EXCN_FileNotFoundCAP
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xyzVector_float
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IOTraits_T_long_int_T
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EXCN_IO
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rosetta.PyMolLink
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IOTraits_T_long_int_TAP
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EXCN_IOAP
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rosetta
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IOTraits_T_long_int_TCAP
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EXCN_IOCAP
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IOTraits_T_long_unsigned_int_T
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EXCN_JD2Failure
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rosetta.basic._basic_
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EXCN_JD2FailureAP
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EXCN_JD2FailureCAP
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rosetta.basic.database._basic_database_
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IOTraits_T_short_int_T
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EXCN_KeyError
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rosetta.basic.database.insert_statement_generator
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IOTraits_T_short_int_TAP
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EXCN_KeyErrorAP
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rosetta.basic.database.insert_statement_generator._basic_database_insert_statement_generator_
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IOTraits_T_short_int_TCAP
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EXCN_KeyErrorCAP
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rosetta.basic.database.schema_generator
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IOTraits_T_short_unsigned_int_T
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EXCN_Msg_Exception
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rosetta.basic.database.schema_generator._basic_database_schema_generator_
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IOTraits_T_short_unsigned_int_TAP
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EXCN_Msg_ExceptionAP
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rosetta.basic.datacache
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ExposedHydrophobicsFilterAP
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__instance_size__
(in
FixedBBInteractionGraphAP
)
__warningregistry__
(in
rosetta.protocols.hotspot_hashing
)
__init__()
(in
ExposedHydrophobicsFilterCAP
)
__instance_size__
(in
FixedBBInteractionGraphCAP
)
__warningregistry__
(in
rosetta.protocols.hybridization
)
__init__()
(in
ExposedHydrophobicsFilterCreator
)
__instance_size__
(in
FixedBBNodeAP
)
__warningregistry__
(in
rosetta.protocols.indexed_structure_store.filters
)
__init__()
(in
ExposedHydrophobicsFilterCreatorAP
)
__instance_size__
(in
FixedBBNodeCAP
)
__warningregistry__
(in
rosetta.protocols.interface
)
__init__()
(in
ExposedHydrophobicsFilterCreatorCAP
)
__instance_size__
(in
HPatchEnergyAP
)
__warningregistry__
(in
rosetta.protocols.jd2
)
__init__()
(in
__CPP_ExposedHydrophobicsFilterCreator__
)
__instance_size__
(in
HPatchEnergyCAP
)
__warningregistry__
(in
rosetta.protocols.kinematic_closure.perturbers
)
__init__()
(in
__CPP_ExposedHydrophobicsFilter__
)
__instance_size__
(in
HPatchEnergyCreatorAP
)
__warningregistry__
(in
rosetta.protocols.ligand_docking
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
__instance_size__
(in
HPatchEnergyCreatorCAP
)
__warningregistry__
(in
rosetta.protocols.loop_build
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
__instance_size__
(in
InteractionGraphBaseAP
)
__warningregistry__
(in
rosetta.protocols.loop_modeling
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
__instance_size__
(in
InteractionGraphBaseCAP
)
__warningregistry__
(in
rosetta.protocols.loop_modeling.refiners
)
__init__()
(in
GreedyOptMutationMover
)
__instance_size__
(in
InteractionGraphFactory
)
__warningregistry__
(in
rosetta.protocols.loop_modeling.utilities
)
__init__()
(in
GreedyOptMutationMoverAP
)
__instance_size__
(in
InteractionGraphFactoryAP
)
__warningregistry__
(in
rosetta.protocols.loophash
)
__init__()
(in
GreedyOptMutationMoverCAP
)
__instance_size__
(in
InteractionGraphFactoryCAP
)
__warningregistry__
(in
rosetta.protocols.loops.loop_mover
)
__init__()
(in
GreedyOptMutationMoverCreator
)
__instance_size__
(in
InvRotamerDots
)
__warningregistry__
(in
rosetta.protocols.match.downstream
)
__init__()
(in
GreedyOptMutationMoverCreatorAP
)
__instance_size__
(in
InvRotamerDotsAP
)
__warningregistry__
(in
rosetta.protocols.match.output
)
__init__()
(in
GreedyOptMutationMoverCreatorCAP
)
__instance_size__
(in
InvRotamerDotsCAP
)
__warningregistry__
(in
rosetta.protocols.matdes
)
__init__()
(in
ParetoOptMutationMover
)
__instance_size__
(in
LazyEdgeAP
)
__warningregistry__
(in
rosetta.protocols.md
)
__init__()
(in
ParetoOptMutationMoverAP
)
__instance_size__
(in
LazyEdgeCAP
)
__warningregistry__
(in
rosetta.protocols.membrane
)
__init__()
(in
ParetoOptMutationMoverCAP
)
__instance_size__
(in
LazyInteractionGraph
)
__warningregistry__
(in
rosetta.protocols.membrane.geometry
)
__init__()
(in
ParetoOptMutationMoverCreator
)
__instance_size__
(in
LazyInteractionGraphAP
)
__warningregistry__
(in
rosetta.protocols.membrane.symmetry
)
__init__()
(in
ParetoOptMutationMoverCreatorAP
)
__instance_size__
(in
LazyInteractionGraphCAP
)
__warningregistry__
(in
rosetta.protocols.membrane.visualize
)
__init__()
(in
ParetoOptMutationMoverCreatorCAP
)
__instance_size__
(in
LazyNodeAP
)
__warningregistry__
(in
rosetta.protocols.moves
)
__init__()
(in
PointMutationCalculator
)
__instance_size__
(in
LazyNodeCAP
)
__warningregistry__
(in
rosetta.protocols.mpi_refinement
)
__init__()
(in
PointMutationCalculatorAP
)
__instance_size__
(in
LinearMemEdgeAP
)
__warningregistry__
(in
rosetta.protocols.ncbb
)
__init__()
(in
PointMutationCalculatorCAP
)
__instance_size__
(in
LinearMemEdgeCAP
)
__warningregistry__
(in
rosetta.protocols.ncbb.oop
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
__instance_size__
(in
LinearMemNodeAP
)
__warningregistry__
(in
rosetta.protocols.neighbor
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
__instance_size__
(in
LinearMemNodeCAP
)
__warningregistry__
(in
rosetta.protocols.normalmode
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
__instance_size__
(in
LinearMemoryInteractionGraph
)
__warningregistry__
(in
rosetta.protocols.outputter
)
__init__()
(in
__CPP_GreedyOptMutationMoverCreator__
)
__instance_size__
(in
LinearMemoryInteractionGraphAP
)
__warningregistry__
(in
rosetta.protocols.pack_daemon
)
__init__()
(in
__CPP_GreedyOptMutationMover__
)
__instance_size__
(in
LinearMemoryInteractionGraphCAP
)
__warningregistry__
(in
rosetta.protocols.pockets
)
__init__()
(in
__CPP_ParetoOptMutationMoverCreator__
)
__instance_size__
(in
NodeBase
)
__warningregistry__
(in
rosetta.protocols.protein_interface_design.filters
)
__init__()
(in
__CPP_ParetoOptMutationMover__
)
__instance_size__
(in
NodeBaseAP
)
__warningregistry__
(in
rosetta.protocols.protein_interface_design.movers
)
__init__()
(in
DNABase
)
__instance_size__
(in
NodeBaseCAP
)
__warningregistry__
(in
rosetta.protocols.rbsegment_relax
)
__init__()
(in
DNABaseAP
)
__instance_size__
(in
OnTheFlyEdgeAP
)
__warningregistry__
(in
rosetta.protocols.relax
)
__init__()
(in
DNABaseCAP
)
__instance_size__
(in
OnTheFlyEdgeCAP
)
__warningregistry__
(in
rosetta.protocols.rigid
)
__init__()
(in
DNABasepair
)
__instance_size__
(in
OnTheFlyInteractionGraphAP
)
__warningregistry__
(in
rosetta.protocols.rosetta_scripts
)
__init__()
(in
DNABasepairAP
)
__instance_size__
(in
OnTheFlyInteractionGraphCAP
)
__warningregistry__
(in
rosetta.protocols.rpc
)
__init__()
(in
DNABasepairCAP
)
__instance_size__
(in
OnTheFlyNode
)
__warningregistry__
(in
rosetta.protocols.scoring.methods
)
__init__()
(in
DNABasestep
)
__instance_size__
(in
OnTheFlyNodeAP
)
__warningregistry__
(in
rosetta.protocols.scoring.methods.pcs
)
__init__()
(in
DNABasestepAP
)
__instance_size__
(in
OnTheFlyNodeCAP
)
__warningregistry__
(in
rosetta.protocols.seeded_abinitio
)
__init__()
(in
DNABasestepCAP
)
__instance_size__
(in
PDEdgeAP
)
__warningregistry__
(in
rosetta.protocols.sic_dock
)
__init__()
(in
DNAParameters
)
__instance_size__
(in
PDEdgeCAP
)
__warningregistry__
(in
rosetta.protocols.sic_dock.scores
)
__init__()
(in
DNAParametersAP
)
__instance_size__
(in
PDInteractionGraph
)
__warningregistry__
(in
rosetta.protocols.simple_filters
)
__init__()
(in
DNAParametersCAP
)
__instance_size__
(in
PDInteractionGraphAP
)
__warningregistry__
(in
rosetta.protocols.simple_moves
)
__init__()
(in
DesignProteinBackboneAroundDNA
)
__instance_size__
(in
PDInteractionGraphCAP
)
__warningregistry__
(in
rosetta.protocols.simple_moves.chiral
)
__init__()
(in
DesignProteinBackboneAroundDNAAP
)
__instance_size__
(in
PDNode
)
__warningregistry__
(in
rosetta.protocols.stepwise.legacy.modeler.protein
)
__init__()
(in
DesignProteinBackboneAroundDNACAP
)
__instance_size__
(in
PDNodeAP
)
__warningregistry__
(in
rosetta.protocols.stepwise.modeler
)
__init__()
(in
DesignProteinBackboneAroundDNACreator
)
__instance_size__
(in
PDNodeCAP
)
__warningregistry__
(in
rosetta.protocols.stepwise.modeler.align
)
__init__()
(in
DesignProteinBackboneAroundDNACreatorAP
)
__instance_size__
(in
PrecomputedPairEnergiesEdgeAP
)
__warningregistry__
(in
rosetta.protocols.stepwise.modeler.protein.checker
)
__init__()
(in
DesignProteinBackboneAroundDNACreatorCAP
)
__instance_size__
(in
PrecomputedPairEnergiesEdgeCAP
)
__warningregistry__
(in
rosetta.protocols.stepwise.modeler.rna
)
__init__()
(in
DnaChains
)
__instance_size__
(in
PrecomputedPairEnergiesInteractionGraphAP
)
__warningregistry__
(in
rosetta.protocols.stepwise.modeler.rna.checker
)
__init__()
(in
DnaChainsAP
)
__instance_size__
(in
PrecomputedPairEnergiesInteractionGraphCAP
)
__warningregistry__
(in
rosetta.protocols.stepwise.modeler.rna.o2prime
)
__init__()
(in
DnaChainsCAP
)
__instance_size__
(in
PrecomputedPairEnergiesNodeAP
)
__warningregistry__
(in
rosetta.protocols.stepwise.sampler.copy_dofs
)
__init__()
(in
DnaDesignDef
)
__instance_size__
(in
PrecomputedPairEnergiesNodeCAP
)
__warningregistry__
(in
rosetta.protocols.stepwise.sampler.rigid_body
)
__init__()
(in
DnaDesignDefAP
)
__instance_size__
(in
RotamerDots
)
__warningregistry__
(in
rosetta.protocols.stepwise.screener
)
__init__()
(in
DnaDesignDefCAP
)
__instance_size__
(in
RotamerDotsAP
)
__warningregistry__
(in
rosetta.protocols.symmetric_docking.membrane
)
__init__()
(in
DnaInterfaceFinder
)
__instance_size__
(in
RotamerDotsCAP
)
__warningregistry__
(in
rosetta.protocols.toolbox
)
__init__()
(in
DnaInterfaceFinderAP
)
__instance_size__
(in
RotamerDotsCache
)
__warningregistry__
(in
rosetta.protocols.toolbox.match_enzdes_util
)
__init__()
(in
DnaInterfaceFinderCAP
)
__instance_size__
(in
RotamerDotsCacheAP
)
__warningregistry__
(in
rosetta.protocols.toolbox.pose_metric_calculators
)
__init__()
(in
DnaInterfaceMinMover
)
__instance_size__
(in
RotamerDotsCacheCAP
)
__warningregistry__
(in
rosetta.protocols.toolbox.task_operations
)
__init__()
(in
DnaInterfaceMinMoverAP
)
__instance_size__
(in
RotamerDotsRadiusDataAP
)
__warningregistry__
(in
rosetta.protocols.topology_broker.claims
)
__init__()
(in
DnaInterfaceMinMoverCAP
)
__instance_size__
(in
RotamerDotsRadiusDataCAP
)
__warningregistry__
(in
rosetta.protocols.trajectory
)
__init__()
(in
DnaInterfaceMinMoverCreator
)
__instance_size__
(in
SimpleEdgeAP
)
__warningregistry__
(in
rosetta.protocols.unfolded_state_energy_calculator
)
__init__()
(in
DnaInterfaceMinMoverCreatorAP
)
__instance_size__
(in
SimpleEdgeCAP
)
__warningregistry__
(in
rosetta.protocols.vip
)
__init__()
(in
DnaInterfaceMinMoverCreatorCAP
)
__instance_size__
(in
SimpleInteractionGraphAP
)
__warningregistry__
(in
rosetta.protocols.wum2
)
__init__()
(in
DnaInterfaceMultiStateDesign
)
__instance_size__
(in
SimpleInteractionGraphCAP
)
__warningregistry__
(in
rosetta.utility
)
__init__()
(in
DnaInterfaceMultiStateDesignAP
)
__instance_size__
(in
SimpleNodeAP
)
_add_extend()
(in
rosetta
)
__init__()
(in
DnaInterfaceMultiStateDesignCAP
)
__instance_size__
(in
SimpleNodeCAP
)
_add_weights_from_file()
(in
ScoreFunction
)
__init__()
(in
DnaInterfaceMultiStateDesignCreator
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
_ATOM_RADIUS
(in
rosetta.core.scoring.sc._core_scoring_sc_
)
__init__()
(in
DnaInterfaceMultiStateDesignCreatorAP
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
_ATOM_RADIUSAP
(in
rosetta.core.scoring.sc._core_scoring_sc_
)
__init__()
(in
DnaInterfaceMultiStateDesignCreatorCAP
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
_ATOM_RADIUSCAP
(in
rosetta.core.scoring.sc._core_scoring_sc_
)
__init__()
(in
DnaInterfacePacker
)
__instance_size__
(in
SingletonBase_T_core_pack_interaction_graph_RotamerDotsRadiusData_T
)
_basic_
(in
rosetta.basic
)
__init__()
(in
DnaInterfacePackerAP
)
__instance_size__
(in
SingletonBase_T_core_pack_interaction_graph_RotamerDotsRadiusData_TAP
)
_basic_database_
(in
rosetta.basic.database
)
__init__()
(in
DnaInterfacePackerCAP
)
__instance_size__
(in
SingletonBase_T_core_pack_interaction_graph_RotamerDotsRadiusData_TCAP
)
_basic_database_insert_statement_generator_
(in
rosetta.basic.database.insert_statement_generator
)
__init__()
(in
DnaInterfacePackerCreator
)
__instance_size__
(in
SingletonBase_T_core_pack_interaction_graph_SurfacePotential_T
)
_basic_database_schema_generator_
(in
rosetta.basic.database.schema_generator
)
__init__()
(in
DnaInterfacePackerCreatorAP
)
__instance_size__
(in
SingletonBase_T_core_pack_interaction_graph_SurfacePotential_TAP
)
_basic_datacache_
(in
rosetta.basic.datacache
)
__init__()
(in
DnaInterfacePackerCreatorCAP
)
__instance_size__
(in
SingletonBase_T_core_pack_interaction_graph_SurfacePotential_TCAP
)
_basic_gpu_
(in
rosetta.basic.gpu
)
__init__()
(in
DnaNeighbor
)
__instance_size__
(in
SparseMatrixIndex
)
_basic_message_listening_
(in
rosetta.basic.message_listening
)
__init__()
(in
DnaNeighborAP
)
__instance_size__
(in
SparseMatrixIndexAP
)
_basic_options_
(in
rosetta.basic.options
)
__init__()
(in
DnaNeighborCAP
)
__instance_size__
(in
SparseMatrixIndexCAP
)
_basic_options_keys_
(in
rosetta.basic.options.keys
)
__init__()
(in
DnaPosition
)
__instance_size__
(in
SurfaceEnergyAP
)
_basic_resource_manager_
(in
rosetta.basic.resource_manager
)
__init__()
(in
DnaPositionAP
)
__instance_size__
(in
SurfaceEnergyCAP
)
_basic_resource_manager_fallback_configuration_
(in
rosetta.basic.resource_manager.fallback_configuration
)
__init__()
(in
DnaPositionCAP
)
__instance_size__
(in
SurfaceEnergyCreatorAP
)
_basic_resource_manager_locator_
(in
rosetta.basic.resource_manager.locator
)
__init__()
(in
PDBOutput
)
__instance_size__
(in
SurfaceEnergyCreatorCAP
)
_basic_sampling_
(in
rosetta.basic.sampling
)
__init__()
(in
PDBOutputAP
)
__instance_size__
(in
SurfacePotentialAP
)
_basic_sampling_orientations_
(in
rosetta.basic.sampling.orientations
)
__init__()
(in
PDBOutputCAP
)
__instance_size__
(in
SurfacePotentialCAP
)
_basic_svd_
(in
rosetta.basic.svd
)
__init__()
(in
PositionType
)
__instance_size__
(in
SymmLinearMemEdgeAP
)
_core_
(in
rosetta.core
)
__init__()
(in
PositionTypeAP
)
__instance_size__
(in
SymmLinearMemEdgeCAP
)
_core_chemical_
(in
rosetta.core.chemical
)
__init__()
(in
PositionTypeCAP
)
__instance_size__
(in
SymmLinearMemNodeAP
)
_core_chemical_carbohydrates_
(in
rosetta.core.chemical.carbohydrates
)
__init__()
(in
ResTypeSequence_lt
)
__instance_size__
(in
SymmLinearMemNodeCAP
)
_core_chemical_gasteiger_
(in
rosetta.core.chemical.gasteiger
)
__init__()
(in
ResTypeSequence_ltAP
)
__instance_size__
(in
SymmLinearMemoryInteractionGraph
)
_core_chemical_orbitals_
(in
rosetta.core.chemical.orbitals
)
__init__()
(in
ResTypeSequence_ltCAP
)
__instance_size__
(in
SymmLinearMemoryInteractionGraphAP
)
_core_chemical_residue_properties_
(in
rosetta.core.chemical.residue_properties
)
__init__()
(in
RestrictDesignToProteinDNAInterface
)
__instance_size__
(in
SymmLinearMemoryInteractionGraphCAP
)
_core_chemical_rna_
(in
rosetta.core.chemical.rna
)
__init__()
(in
RestrictDesignToProteinDNAInterfaceAP
)
__instance_size__
(in
SymmMinimalistEdgeAP
)
_core_chemical_sdf_
(in
rosetta.core.chemical.sdf
)
__init__()
(in
RestrictDesignToProteinDNAInterfaceCAP
)
__instance_size__
(in
SymmMinimalistEdgeCAP
)
_core_coarse_
(in
rosetta.core.coarse
)
__init__()
(in
RestrictDesignToProteinDNAInterfaceCreator
)
__instance_size__
(in
SymmMinimalistInteractionGraph
)
_core_conformation_
(in
rosetta.core.conformation
)
__init__()
(in
RestrictDesignToProteinDNAInterfaceCreatorAP
)
__instance_size__
(in
SymmMinimalistInteractionGraphAP
)
_core_conformation_membrane_
(in
rosetta.core.conformation.membrane
)
__init__()
(in
RestrictDesignToProteinDNAInterfaceCreatorCAP
)
__instance_size__
(in
SymmMinimalistInteractionGraphCAP
)
_core_conformation_orbitals_
(in
rosetta.core.conformation.orbitals
)
__init__()
(in
RotamerDNAHBondFilter
)
__instance_size__
(in
SymmMinimalistNodeAP
)
_core_conformation_parametric_
(in
rosetta.core.conformation.parametric
)
__init__()
(in
RotamerDNAHBondFilterAP
)
__instance_size__
(in
SymmMinimalistNodeCAP
)
_core_conformation_signals_
(in
rosetta.core.conformation.signals
)
__init__()
(in
RotamerDNAHBondFilterCAP
)
__instance_size__
(in
SymmOnTheFlyEdgeAP
)
_core_conformation_symmetry_
(in
rosetta.core.conformation.symmetry
)
__init__()
(in
SeparateDnaFromNonDna
)
__instance_size__
(in
SymmOnTheFlyEdgeCAP
)
_core_environment_
(in
rosetta.core.environment
)
__init__()
(in
SeparateDnaFromNonDnaAP
)
__instance_size__
(in
SymmOnTheFlyInteractionGraphAP
)
_core_fragment_
(in
rosetta.core.fragment
)
__init__()
(in
SeparateDnaFromNonDnaCAP
)
__instance_size__
(in
SymmOnTheFlyInteractionGraphCAP
)
_core_fragment_picking_old_
(in
rosetta.core.fragment.picking_old
)
__init__()
(in
SeparateDnaFromNonDnaCreator
)
__instance_size__
(in
SymmOnTheFlyNode
)
_core_fragment_picking_old_concepts_
(in
rosetta.core.fragment.picking_old.concepts
)
__init__()
(in
SeparateDnaFromNonDnaCreatorAP
)
__instance_size__
(in
SymmOnTheFlyNodeAP
)
_core_fragment_picking_old_vall_
(in
rosetta.core.fragment.picking_old.vall
)
__init__()
(in
SeparateDnaFromNonDnaCreatorCAP
)
__instance_size__
(in
SymmOnTheFlyNodeCAP
)
_core_fragment_picking_old_vall_eval_
(in
rosetta.core.fragment.picking_old.vall.eval
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
__instance_size__
(in
exposed_hydrophobic_data
)
_core_fragment_picking_old_vall_gen_
(in
rosetta.core.fragment.picking_old.vall.gen
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
__instance_size__
(in
exposed_hydrophobic_dataAP
)
_core_fragment_picking_old_vall_scores_
(in
rosetta.core.fragment.picking_old.vall.scores
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
__instance_size__
(in
exposed_hydrophobic_dataCAP
)
_core_graph_
(in
rosetta.core.graph
)
__init__()
(in
WatsonCrickRotamerCouplings
)
__instance_size__
(in
history_queue_struct
)
_core_grid_
(in
rosetta.core.grid
)
__init__()
(in
WatsonCrickRotamerCouplingsAP
)
__instance_size__
(in
history_queue_structAP
)
_core_id_
(in
rosetta.core.id
)
__init__()
(in
WatsonCrickRotamerCouplingsCAP
)
__instance_size__
(in
history_queue_structCAP
)
_core_import_pose_
(in
rosetta.core.import_pose
)
__init__()
(in
WatsonCrickRotamerCouplingsCreator
)
__instance_size__
(in
AddResiduesRotamerSetOperationAP
)
_core_import_pose_atom_tree_diffs_
(in
rosetta.core.import_pose.atom_tree_diffs
)
__init__()
(in
WatsonCrickRotamerCouplingsCreatorAP
)
__instance_size__
(in
AddResiduesRotamerSetOperationCAP
)
_core_import_pose_pose_stream_
(in
rosetta.core.import_pose.pose_stream
)
__init__()
(in
WatsonCrickRotamerCouplingsCreatorCAP
)
__instance_size__
(in
BumpSelector
)
_core_indexed_structure_store_
(in
rosetta.core.indexed_structure_store
)
__init__()
(in
__CPP_DesignProteinBackboneAroundDNACreator__
)
__instance_size__
(in
BumpSelectorAP
)
_core_init_
(in
rosetta.core.init
)
__init__()
(in
__CPP_DesignProteinBackboneAroundDNA__
)
__instance_size__
(in
BumpSelectorCAP
)
_core_io_
(in
rosetta.core.io
)
__init__()
(in
__CPP_DnaInterfaceMinMoverCreator__
)
__instance_size__
(in
ContinuousRotamerSet
)
_core_io_carbohydrates_
(in
rosetta.core.io.carbohydrates
)
__init__()
(in
__CPP_DnaInterfaceMinMover__
)
__instance_size__
(in
ContinuousRotamerSetAP
)
_core_io_ddg_
(in
rosetta.core.io.ddg
)
__init__()
(in
__CPP_DnaInterfaceMultiStateDesignCreator__
)
__instance_size__
(in
ContinuousRotamerSetCAP
)
_core_io_pdb_
(in
rosetta.core.io.pdb
)
__init__()
(in
__CPP_DnaInterfaceMultiStateDesign__
)
__instance_size__
(in
ContinuousRotamerSets
)
_core_io_raw_data_
(in
rosetta.core.io.raw_data
)
__init__()
(in
__CPP_DnaInterfacePackerCreator__
)
__instance_size__
(in
ContinuousRotamerSetsAP
)
_core_io_rna_
(in
rosetta.core.io.rna
)
__init__()
(in
__CPP_DnaInterfacePacker__
)
__instance_size__
(in
ContinuousRotamerSetsCAP
)
_core_io_sequence_comparation_
(in
rosetta.core.io.sequence_comparation
)
__init__()
(in
__CPP_PDBOutput__
)
__instance_size__
(in
FixbbRotamerSetsAP
)
_core_io_serialization_
(in
rosetta.core.io.serialization
)
__init__()
(in
__CPP_RestrictDesignToProteinDNAInterfaceCreator__
)
__instance_size__
(in
FixbbRotamerSetsCAP
)
_core_io_silent_
(in
rosetta.core.io.silent
)
__init__()
(in
__CPP_RestrictDesignToProteinDNAInterface__
)
__instance_size__
(in
RotamerCouplings
)
_core_kinematics_
(in
rosetta.core.kinematics
)
__init__()
(in
__CPP_RotamerDNAHBondFilter__
)
__instance_size__
(in
RotamerCouplingsAP
)
_core_kinematics_tree_
(in
rosetta.core.kinematics.tree
)
__init__()
(in
__CPP_SeparateDnaFromNonDnaCreator__
)
__instance_size__
(in
RotamerCouplingsCAP
)
_core_optimization_
(in
rosetta.core.optimization
)
__init__()
(in
__CPP_SeparateDnaFromNonDna__
)
__instance_size__
(in
RotamerLinks
)
_core_optimization_symmetry_
(in
rosetta.core.optimization.symmetry
)
__init__()
(in
__CPP_WatsonCrickRotamerCouplingsCreator__
)
__instance_size__
(in
RotamerLinksAP
)
_core_pack_
(in
rosetta.core.pack
)
__init__()
(in
__CPP_WatsonCrickRotamerCouplings__
)
__instance_size__
(in
RotamerLinksCAP
)
_core_pack_annealer_
(in
rosetta.core.pack.annealer
)
__init__()
(in
ConformerSwitchMover
)
__instance_size__
(in
RotamerOperation
)
_core_pack_dunbrack_
(in
rosetta.core.pack.dunbrack
)
__init__()
(in
ConformerSwitchMoverAP
)
__instance_size__
(in
RotamerOperationAP
)
_core_pack_dunbrack_cenrot_
(in
rosetta.core.pack.dunbrack.cenrot
)
__init__()
(in
ConformerSwitchMoverCAP
)
__instance_size__
(in
RotamerOperationCAP
)
_core_pack_interaction_graph_
(in
rosetta.core.pack.interaction_graph
)
__init__()
(in
ConformerSwitchMoverCreator
)
__instance_size__
(in
RotamerSetAP
)
_core_pack_rotamer_set_
(in
rosetta.core.pack.rotamer_set
)
__init__()
(in
ConformerSwitchMoverCreatorAP
)
__instance_size__
(in
RotamerSetCAP
)
_core_pack_rotamer_set_symmetry_
(in
rosetta.core.pack.rotamer_set.symmetry
)
__init__()
(in
ConformerSwitchMoverCreatorCAP
)
__instance_size__
(in
RotamerSetFactory
)
_core_pack_scmin_'
(in rosetta.core.pack.scmin)
__init__()
(in
DockMCMCycle
)
__instance_size__
(in
RotamerSetFactoryAP
)
_core_pack_task_
(in
rosetta.core.pack.task
)
__init__()
(in
DockMCMCycleAP
)
__instance_size__
(in
RotamerSetFactoryCAP
)
_core_pack_task_operation_
(in
rosetta.core.pack.task.operation
)
__init__()
(in
DockMCMCycleCAP
)
__instance_size__
(in
RotamerSetOperation
)
_core_pack_task_operation_util_
(in
rosetta.core.pack.task.operation.util
)
__init__()
(in
DockMCMProtocol
)
__instance_size__
(in
RotamerSetOperationAP
)
_core_pack_task_residue_selector_
(in
rosetta.core.pack.task.residue_selector
)
__init__()
(in
DockMCMProtocolAP
)
__instance_size__
(in
RotamerSetOperationCAP
)
_core_pack_task_rna_
(in
rosetta.core.pack.task.rna
)
__init__()
(in
DockMCMProtocolCAP
)
__instance_size__
(in
RotamerSet_AP
)
_core_pose_
(in
rosetta.core.pose
)
__init__()
(in
DockMinMover
)
__instance_size__
(in
RotamerSet_CAP
)
_core_pose_carbohydrates_
(in
rosetta.core.pose.carbohydrates
)
__init__()
(in
DockMinMoverAP
)
__instance_size__
(in
RotamerSetsAP
)
_core_pose_copydofs_
(in
rosetta.core.pose.copydofs
)
__init__()
(in
DockMinMoverCAP
)
__instance_size__
(in
RotamerSetsBase
)
_core_pose_datacache_
(in
rosetta.core.pose.datacache
)
__init__()
(in
DockSetupMover
)
__instance_size__
(in
RotamerSetsBaseAP
)
_core_pose_full_model_info_
(in
rosetta.core.pose.full_model_info
)
__init__()
(in
DockSetupMoverAP
)
__instance_size__
(in
RotamerSetsBaseCAP
)
_core_pose_metrics_
(in
rosetta.core.pose.metrics
)
__init__()
(in
DockSetupMoverCAP
)
__instance_size__
(in
RotamerSetsCAP
)
_core_pose_metrics_simple_calculators_
(in
rosetta.core.pose.metrics.simple_calculators
)
__init__()
(in
DockSetupMoverCreator
)
__instance_size__
(in
RotamerSubsetAP
)
_core_pose_motif_
(in
rosetta.core.pose.motif
)
__init__()
(in
DockSetupMoverCreatorAP
)
__instance_size__
(in
RotamerSubsetCAP
)
_core_pose_ncbb_
(in
rosetta.core.pose.ncbb
)
__init__()
(in
DockSetupMoverCreatorCAP
)
__instance_size__
(in
RotamerSubsetsAP
)
_core_pose_rna_
(in
rosetta.core.pose.rna
)
__init__()
(in
DockTaskFactory
)
__instance_size__
(in
RotamerSubsetsCAP
)
_core_pose_signals_
(in
rosetta.core.pose.signals
)
__init__()
(in
DockTaskFactoryAP
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
_core_pose_symmetry_
(in
rosetta.core.pose.symmetry
)
__init__()
(in
DockTaskFactoryCAP
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
_core_scoring_
(in
rosetta.core.scoring
)
__init__()
(in
DockingEnsemble
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
_core_scoring_bin_transitions_
(in
rosetta.core.scoring.bin_transitions
)
__init__()
(in
DockingEnsembleAP
)
__instance_size__
(in
UnboundRotamersOperationAP
)
_core_scoring_carbohydrates_
(in
rosetta.core.scoring.carbohydrates
)
__init__()
(in
DockingEnsembleCAP
)
__instance_size__
(in
UnboundRotamersOperationCAP
)
_core_scoring_carbon_hbonds_
(in
rosetta.core.scoring.carbon_hbonds
)
__init__()
(in
DockingEnsemblePrepackProtocol
)
__instance_size__
(in
WaterAnchorInfo
)
_core_scoring_constraints_
(in
rosetta.core.scoring.constraints
)
__init__()
(in
DockingEnsemblePrepackProtocolAP
)
__instance_size__
(in
WaterAnchorInfoAP
)
_core_scoring_cryst_
(in
rosetta.core.scoring.cryst
)
__init__()
(in
DockingEnsemblePrepackProtocolCAP
)
__instance_size__
(in
WaterAnchorInfoCAP
)
_core_scoring_custom_pair_distance_
(in
rosetta.core.scoring.custom_pair_distance
)
__init__()
(in
DockingHighRes
)
__instance_size__
(in
WaterPackingInfoAP
)
_core_scoring_disulfides_
(in
rosetta.core.scoring.disulfides
)
__init__()
(in
DockingHighResAP
)
__instance_size__
(in
WaterPackingInfoCAP
)
_core_scoring_dna_
(in
rosetta.core.scoring.dna
)
__init__()
(in
DockingHighResCAP
)
__instance_size__
(in
SymmetricRotamerSetFactoryAP
)
_core_scoring_dssp_
(in
rosetta.core.scoring.dssp
)
__init__()
(in
DockingHighResFilter
)
__instance_size__
(in
SymmetricRotamerSetFactoryCAP
)
_core_scoring_elec_
(in
rosetta.core.scoring.elec
)
__init__()
(in
DockingHighResFilterAP
)
__instance_size__
(in
SymmetricRotamerSet_AP
)
_core_scoring_electron_density_
(in
rosetta.core.scoring.electron_density
)
__init__()
(in
DockingHighResFilterCAP
)
__instance_size__
(in
SymmetricRotamerSet_CAP
)
_core_scoring_electron_density_atomwise_
(in
rosetta.core.scoring.electron_density_atomwise
)
__init__()
(in
DockingHighResLegacy
)
__instance_size__
(in
SymmetricRotamerSetsAP
)
_core_scoring_etable_
(in
rosetta.core.scoring.etable
)
__init__()
(in
DockingHighResLegacyAP
)
__instance_size__
(in
SymmetricRotamerSetsCAP
)
_core_scoring_etable_coulomb_
(in
rosetta.core.scoring.etable.coulomb
)
__init__()
(in
DockingHighResLegacyCAP
)
__instance_size__
(in
AtomTreeCollection
)
_core_scoring_etable_count_pair_
(in
rosetta.core.scoring.etable.count_pair
)
__init__()
(in
DockingInitialPerturbation
)
__instance_size__
(in
AtomTreeCollectionAP
)
_core_scoring_etable_etrie_
(in
rosetta.core.scoring.etable.etrie
)
__init__()
(in
DockingInitialPerturbationAP
)
__instance_size__
(in
AtomTreeCollectionCAP
)
_core_scoring_facts_
(in
rosetta.core.scoring.facts
)
__init__()
(in
DockingInitialPerturbationCAP
)
__instance_size__
(in
CartSCMinMultifuncAP
)
_core_scoring_fiber_diffraction_
(in
rosetta.core.scoring.fiber_diffraction
)
__init__()
(in
DockingInitialPerturbationCreator
)
__instance_size__
(in
CartSCMinMultifuncCAP
)
_core_scoring_func_
(in
rosetta.core.scoring.func
)
__init__()
(in
DockingInitialPerturbationCreatorAP
)
__instance_size__
(in
ResidueAtomTreeCollectionMomento
)
_core_scoring_geometric_solvation_
(in
rosetta.core.scoring.geometric_solvation
)
__init__()
(in
DockingInitialPerturbationCreatorCAP
)
__instance_size__
(in
ResidueAtomTreeCollectionMomentoAP
)
_core_scoring_hackaro_
(in
rosetta.core.scoring.hackaro
)
__init__()
(in
DockingLowRes
)
__instance_size__
(in
ResidueAtomTreeCollectionMomentoCAP
)
_core_scoring_hbonds_
(in
rosetta.core.scoring.hbonds
)
__init__()
(in
DockingLowResAP
)
__instance_size__
(in
ALLAAAP
)
_core_scoring_hbonds_hbtrie_
(in
rosetta.core.scoring.hbonds.hbtrie
)
__init__()
(in
DockingLowResCAP
)
__instance_size__
(in
ALLAACAP
)
_core_scoring_interface__
(in
rosetta.core.scoring.interface_
)
__init__()
(in
DockingLowResEnsemble
)
__instance_size__
(in
ALLAAwcAP
)
_core_scoring_loop_graph_
(in
rosetta.core.scoring.loop_graph
)
__init__()
(in
DockingLowResEnsembleAP
)
__instance_size__
(in
ALLAAwcCAP
)
_core_scoring_memb_etable_
(in
rosetta.core.scoring.memb_etable
)
__init__()
(in
DockingLowResEnsembleCAP
)
__instance_size__
(in
ALLAAxcAP
)
_core_scoring_membrane_
(in
rosetta.core.scoring.membrane
)
__init__()
(in
DockingLowResFilter
)
__instance_size__
(in
ALLAAxcCAP
)
_core_scoring_methods_
(in
rosetta.core.scoring.methods
)
__init__()
(in
DockingLowResFilterAP
)
__instance_size__
(in
APOLAAP
)
_core_scoring_methods_carbohydrates_
(in
rosetta.core.scoring.methods.carbohydrates
)
__init__()
(in
DockingLowResFilterCAP
)
__instance_size__
(in
APOLACAP
)
_core_scoring_methods_dfire_
(in
rosetta.core.scoring.methods.dfire
)
__init__()
(in
DockingPrepackProtocol
)
__instance_size__
(in
APOLARAP
)
_core_scoring_methods_vall_lookback_
(in
rosetta.core.scoring.methods.vall_lookback
)
__init__()
(in
DockingPrepackProtocolAP
)
__instance_size__
(in
APOLARCAP
)
_core_scoring_mm_
(in
rosetta.core.scoring.mm
)
__init__()
(in
DockingPrepackProtocolCAP
)
__instance_size__
(in
AUTOAP
)
_core_scoring_mm_mmtrie_
(in
rosetta.core.scoring.mm.mmtrie
)
__init__()
(in
DockingProtocol
)
__instance_size__
(in
AUTOCAP
)
_core_scoring_motif_
(in
rosetta.core.scoring.motif
)
__init__()
(in
DockingProtocolAP
)
__instance_size__
(in
EMPTYAP
)
_core_scoring_nv_
(in
rosetta.core.scoring.nv
)
__init__()
(in
DockingProtocolCAP
)
__instance_size__
(in
EMPTYCAP
)
_core_scoring_orbitals_
(in
rosetta.core.scoring.orbitals
)
__init__()
(in
DockingProtocolCreator
)
__instance_size__
(in
EXAP
)
_core_scoring_packing_
(in
rosetta.core.scoring.packing
)
__init__()
(in
DockingProtocolCreatorAP
)
__instance_size__
(in
EXCAP
)
_core_scoring_packstat_
(in
rosetta.core.scoring.packstat
)
__init__()
(in
DockingProtocolCreatorCAP
)
__instance_size__
(in
EX_CUTOFFAP
)
_core_scoring_rna_
(in
rosetta.core.scoring.rna
)
__init__()
(in
DockingSlideIntoContact
)
__instance_size__
(in
EX_CUTOFFCAP
)
_core_scoring_rna_chemical_shift_
(in
rosetta.core.scoring.rna.chemical_shift
)
__init__()
(in
DockingSlideIntoContactAP
)
__instance_size__
(in
FIX_HIS_TAUTOMERAP
)
_core_scoring_rna_data_
(in
rosetta.core.scoring.rna.data
)
__init__()
(in
DockingSlideIntoContactCAP
)
__instance_size__
(in
FIX_HIS_TAUTOMERCAP
)
_core_scoring_sasa_
(in
rosetta.core.scoring.sasa
)
__init__()
(in
EllipsoidalRandomizationMover
)
__instance_size__
(in
IGEdgeReweightContainer
)
_core_scoring_saxs_
(in
rosetta.core.scoring.saxs
)
__init__()
(in
EllipsoidalRandomizationMoverAP
)
__instance_size__
(in
IGEdgeReweightContainerAP
)
_core_scoring_sc_
(in
rosetta.core.scoring.sc
)
__init__()
(in
EllipsoidalRandomizationMoverCAP
)
__instance_size__
(in
IGEdgeReweightContainerCAP
)
_core_scoring_solid_surface_
(in
rosetta.core.scoring.solid_surface
)
__init__()
(in
FaDockingSlideIntoContact
)
__instance_size__
(in
IGEdgeReweighter
)
_core_scoring_sym_e_
(in
rosetta.core.scoring.sym_e
)
__init__()
(in
FaDockingSlideIntoContactAP
)
__instance_size__
(in
IGEdgeReweighterAP
)
_core_scoring_symmetry_
(in
rosetta.core.scoring.symmetry
)
__init__()
(in
FaDockingSlideIntoContactCAP
)
__instance_size__
(in
IGEdgeReweighterCAP
)
_core_scoring_trie_
(in
rosetta.core.scoring.trie
)
__init__()
(in
InterfaceSidechainMinMover
)
__instance_size__
(in
NATAAAP
)
_core_scoring_vdwaals_'
(in rosetta.core.scoring.vdwaals)
__init__()
(in
InterfaceSidechainMinMoverAP
)
__instance_size__
(in
NATAACAP
)
_core_sequence_
(in
rosetta.core.sequence
)
__init__()
(in
InterfaceSidechainMinMoverCAP
)
__instance_size__
(in
NATROAP
)
_core_util_
(in
rosetta.core.util
)
__init__()
(in
RigidBodyInfo
)
__instance_size__
(in
NATROCAP
)
_DOT
(in
rosetta.core.scoring.sc._core_scoring_sc_
)
__init__()
(in
RigidBodyInfoAP
)
__instance_size__
(in
NCAP
)
_DOTAP
(in
rosetta.core.scoring.sc._core_scoring_sc_
)
__init__()
(in
RigidBodyInfoCAP
)
__instance_size__
(in
NCCAP
)
_DOTCAP
(in
rosetta.core.scoring.sc._core_scoring_sc_
)
__init__()
(in
SidechainMinMover
)
__instance_size__
(in
NOTAAAP
)
_extend_func()
(in
rosetta
)
__init__()
(in
SidechainMinMoverAP
)
__instance_size__
(in
NOTAACAP
)
_find_variable_name()
(in
PyMOLMover
)
__init__()
(in
SidechainMinMoverCAP
)
__instance_size__
(in
NO_ADDUCTSAP
)
_get_energies()
(in
PyMOLMover
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
__instance_size__
(in
NO_ADDUCTSCAP
)
_get_hex_per_residue_message()
(in
PyMOLMover
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
__instance_size__
(in
PIKAAAP
)
_get_pose_name()
(in
PyMOLMover
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
__instance_size__
(in
PIKAACAP
)
_HashEntry
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
__init__()
(in
TemperedDocking
)
__instance_size__
(in
PIKNAAP
)
_HashEntryAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
__init__()
(in
TemperedDockingAP
)
__instance_size__
(in
PIKNACAP
)
_HashEntryCAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
__init__()
(in
TemperedDockingCAP
)
__instance_size__
(in
PIKRNAAP
)
_logger
(in
rosetta.logging_support
)
__init__()
(in
TemperedDockingCreator
)
__instance_size__
(in
PIKRNACAP
)
_logging_callback()
(in
rosetta.logging_support
)
__init__()
(in
TemperedDockingCreatorAP
)
__instance_size__
(in
POLARAP
)
_mem_EnergyCreators_
(in
rosetta
)
__init__()
(in
TemperedDockingCreatorCAP
)
__instance_size__
(in
POLARCAP
)
_mem_EnergyMethods_
(in
rosetta
)
__init__()
(in
__CPP_ConformerSwitchMoverCreator__
)
__instance_size__
(in
PackerTaskAP
)
_MergableEntries
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
__init__()
(in
__CPP_ConformerSwitchMover__
)
__instance_size__
(in
PackerTaskCAP
)
_MergableEntriesAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
__init__()
(in
__CPP_DockMCMCycle__
)
__instance_size__
(in
PackerTask_
)
_MergableEntriesCAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
__init__()
(in
__CPP_DockMCMProtocol__
)
__instance_size__
(in
PackerTask_AP
)
_numeric_
(in
rosetta.numeric
)
__init__()
(in
__CPP_DockMinMover__
)
__instance_size__
(in
PackerTask_CAP
)
_numeric_alignment_
(in
rosetta.numeric.alignment
)
__init__()
(in
__CPP_DockSetupMoverCreator__
)
__instance_size__
(in
RESETAP
)
_numeric_coordinate_fitting_
(in
rosetta.numeric.coordinate_fitting
)
__init__()
(in
__CPP_DockSetupMover__
)
__instance_size__
(in
RESETCAP
)
_numeric_crick_equations_
(in
rosetta.numeric.crick_equations
)
__init__()
(in
__CPP_DockingEnsemblePrepackProtocol__
)
__instance_size__
(in
ResfileCommand
)
_numeric_deriv_
(in
rosetta.numeric.deriv
)
__init__()
(in
__CPP_DockingHighResFilter__
)
__instance_size__
(in
ResfileCommandAP
)
_numeric_expression_parser_
(in
rosetta.numeric.expression_parser
)
__init__()
(in
__CPP_DockingHighResLegacy__
)
__instance_size__
(in
ResfileCommandCAP
)
_numeric_fourier_
(in
rosetta.numeric.fourier
)
__init__()
(in
__CPP_DockingHighRes__
)
__instance_size__
(in
ResfileContents
)
_numeric_geometry_
(in
rosetta.numeric.geometry
)
__init__()
(in
__CPP_DockingInitialPerturbationCreator__
)
__instance_size__
(in
ResfileContentsAP
)
_numeric_geometry_hashing_
(in
rosetta.numeric.geometry.hashing
)
__init__()
(in
__CPP_DockingInitialPerturbation__
)
__instance_size__
(in
ResfileContentsCAP
)
_numeric_histograms_
(in
rosetta.numeric.histograms
)
__init__()
(in
__CPP_DockingLowResEnsemble__
)
__instance_size__
(in
ResfileReaderExceptionAP
)
_numeric_internal_
(in
rosetta.numeric.internal
)
__init__()
(in
__CPP_DockingLowResFilter__
)
__instance_size__
(in
ResfileReaderExceptionCAP
)
_numeric_interpolation_
(in
rosetta.numeric.interpolation
)
__init__()
(in
__CPP_DockingLowRes__
)
__instance_size__
(in
ResidueLevelTask
)
_numeric_interpolation_full_
(in
rosetta.numeric.interpolation.full
)
__init__()
(in
__CPP_DockingPrepackProtocol__
)
__instance_size__
(in
ResidueLevelTaskAP
)
_numeric_interpolation_periodic_range_
(in
rosetta.numeric.interpolation.periodic_range
)
__init__()
(in
__CPP_DockingProtocolCreator__
)
__instance_size__
(in
ResidueLevelTaskCAP
)
_numeric_interpolation_periodic_range_full_
(in
rosetta.numeric.interpolation.periodic_range.full
)
__init__()
(in
__CPP_DockingProtocol__
)
__instance_size__
(in
ResidueLevelTask_AP
)
_numeric_interpolation_periodic_range_half_
(in
rosetta.numeric.interpolation.periodic_range.half
)
__init__()
(in
__CPP_DockingSlideIntoContact__
)
__instance_size__
(in
ResidueLevelTask_CAP
)
_numeric_interpolation_periodic_range_periodic_value_
(in
rosetta.numeric.interpolation.periodic_range.periodic_value
)
__init__()
(in
__CPP_EllipsoidalRandomizationMover__
)
__instance_size__
(in
SCANAP
)
_numeric_interpolation_periodic_range_periodic_value_full_
(in
rosetta.numeric.interpolation.periodic_range.periodic_value.full
)
__init__()
(in
__CPP_FaDockingSlideIntoContact__
)
__instance_size__
(in
SCANCAP
)
_numeric_interpolation_periodic_range_periodic_value_half_
(in
rosetta.numeric.interpolation.periodic_range.periodic_value.half
)
__init__()
(in
__CPP_InterfaceSidechainMinMover__
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
_numeric_interpolation_spline_
(in
rosetta.numeric.interpolation.spline
)
__init__()
(in
__CPP_SidechainMinMover__
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
_numeric_kdtree_
(in
rosetta.numeric.kdtree
)
__init__()
(in
__CPP_TemperedDockingCreator__
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
_numeric_kinematic_closure_
(in
rosetta.numeric.kinematic_closure
)
__init__()
(in
__CPP_TemperedDocking__
)
__instance_size__
(in
TARGETAP
)
_numeric_linear_algebra_
(in
rosetta.numeric.linear_algebra
)
__init__()
(in
MPDockingMover
)
__instance_size__
(in
TARGETCAP
)
_numeric_model_quality_
(in
rosetta.numeric.model_quality
)
__init__()
(in
MPDockingMoverAP
)
__instance_size__
(in
TaskFactory
)
_numeric_nls_
(in
rosetta.numeric.nls
)
__init__()
(in
MPDockingMoverCAP
)
__instance_size__
(in
TaskFactoryAP
)
_numeric_random_
(in
rosetta.numeric.random
)
__init__()
(in
MPDockingMoverCreator
)
__instance_size__
(in
TaskFactoryCAP
)
_numeric_statistics_
(in
rosetta.numeric.statistics
)
__init__()
(in
MPDockingMoverCreatorAP
)
__instance_size__
(in
USE_INPUT_SCAP
)
_PLATFORM
(in
rosetta
)
__init__()
(in
MPDockingMoverCreatorCAP
)
__instance_size__
(in
USE_INPUT_SCCAP
)
_Pose_residue_iterator()
(in
rosetta
)
__init__()
(in
MPDockingSetupMover
)
__instance_size__
(in
AddBehaviorRLTAP
)
_PROBE
(in
rosetta.core.scoring.sc._core_scoring_sc_
)
__init__()
(in
MPDockingSetupMoverAP
)
__instance_size__
(in
AddBehaviorRLTCAP
)
_PROBEAP
(in
rosetta.core.scoring.sc._core_scoring_sc_
)
__init__()
(in
MPDockingSetupMoverCAP
)
__instance_size__
(in
AddBehaviorRLTCreatorAP
)
_PROBECAP
(in
rosetta.core.scoring.sc._core_scoring_sc_
)
__init__()
(in
MPDockingSetupMoverCreator
)
__instance_size__
(in
AddBehaviorRLTCreatorCAP
)
_protocols_
(in
rosetta.protocols
)
__init__()
(in
MPDockingSetupMoverCreatorAP
)
__instance_size__
(in
AllResFilterAP
)
_protocols_abinitio_
(in
rosetta.protocols.abinitio
)
__init__()
(in
MPDockingSetupMoverCreatorCAP
)
__instance_size__
(in
AllResFilterCAP
)
_protocols_abinitio_abscript_
(in
rosetta.protocols.abinitio.abscript
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
__instance_size__
(in
AllResFilterCreatorAP
)
_protocols_analysis_
(in
rosetta.protocols.analysis
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
__instance_size__
(in
AllResFilterCreatorCAP
)
_protocols_anchored_design_
(in
rosetta.protocols.anchored_design
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
__instance_size__
(in
AnyResFilterAP
)
_protocols_antibody_
(in
rosetta.protocols.antibody
)
__init__()
(in
__CPP_MPDockingMoverCreator__
)
__instance_size__
(in
AnyResFilterCAP
)
_protocols_antibody_clusters_
(in
rosetta.protocols.antibody.clusters
)
__init__()
(in
__CPP_MPDockingMover__
)
__instance_size__
(in
AnyResFilterCreatorAP
)
_protocols_antibody_constraints_
(in
rosetta.protocols.antibody.constraints
)
__init__()
(in
__CPP_MPDockingSetupMoverCreator__
)
__instance_size__
(in
AnyResFilterCreatorCAP
)
_protocols_antibody_database_
(in
rosetta.protocols.antibody.database
)
__init__()
(in
__CPP_MPDockingSetupMover__
)
__instance_size__
(in
AppendResidueRotamerSetAP
)
_protocols_antibody_design_
(in
rosetta.protocols.antibody.design
)
__init__()
(in
SaneDockingProtocol
)
__instance_size__
(in
AppendResidueRotamerSetCAP
)
_protocols_antibody_legacy_
(in
rosetta.protocols.antibody_legacy
)
__init__()
(in
SaneDockingProtocolAP
)
__instance_size__
(in
AppendResidueRotamerSetCreatorAP
)
_protocols_antibody_snugdock_
(in
rosetta.protocols.antibody.snugdock
)
__init__()
(in
SaneDockingProtocolCAP
)
__instance_size__
(in
AppendResidueRotamerSetCreatorCAP
)
_protocols_antibody_task_operations_
(in
rosetta.protocols.antibody.task_operations
)
__init__()
(in
__CPP_SaneDockingProtocol__
)
__instance_size__
(in
AppendRotamerAP
)
_protocols_backrub_
(in
rosetta.protocols.backrub
)
__init__()
(in
AddAssemblyConstraints
)
__instance_size__
(in
AppendRotamerCAP
)
_protocols_boinc_
(in
rosetta.protocols.boinc
)
__init__()
(in
AddAssemblyConstraintsAP
)
__instance_size__
(in
AppendRotamerCreatorAP
)
_protocols_branch_angle_
(in
rosetta.protocols.branch_angle
)
__init__()
(in
AddAssemblyConstraintsCAP
)
__instance_size__
(in
AppendRotamerCreatorCAP
)
_protocols_canonical_sampling_
(in
rosetta.protocols.canonical_sampling
)
__init__()
(in
AssembleLinkerMover
)
__instance_size__
(in
AppendRotamerSetAP
)
_protocols_canonical_sampling_mc_convergence_checks_
(in
rosetta.protocols.canonical_sampling.mc_convergence_checks
)
__init__()
(in
AssembleLinkerMoverAP
)
__instance_size__
(in
AppendRotamerSetCAP
)
_protocols_cartesian_
(in
rosetta.protocols.cartesian
)
__init__()
(in
AssembleLinkerMoverCAP
)
__instance_size__
(in
AppendRotamerSetCreatorAP
)
_protocols_checkpoint_
(in
rosetta.protocols.checkpoint
)
__init__()
(in
CombineChainsMover
)
__instance_size__
(in
AppendRotamerSetCreatorCAP
)
_protocols_cluster_
(in
rosetta.protocols.cluster
)
__init__()
(in
CombineChainsMoverAP
)
__instance_size__
(in
ChainIsAP
)
_protocols_coarse_rna_'
(in rosetta.protocols.coarse_rna)
__init__()
(in
CombineChainsMoverCAP
)
__instance_size__
(in
ChainIsCAP
)
_protocols_comparative_modeling_
(in
rosetta.protocols.comparative_modeling
)
__init__()
(in
PostDockAssemblyScorer
)
__instance_size__
(in
ChainIsCreatorAP
)
_protocols_comparative_modeling_features_
(in
rosetta.protocols.comparative_modeling.features
)
__init__()
(in
PostDockAssemblyScorerAP
)
__instance_size__
(in
ChainIsCreatorCAP
)
_protocols_constraints_additional_
(in
rosetta.protocols.constraints_additional
)
__init__()
(in
PostDockAssemblyScorerCAP
)
__instance_size__
(in
ChainIsntAP
)
_protocols_contact_map_
(in
rosetta.protocols.contact_map
)
__init__()
(in
__CPP_AddAssemblyConstraints__
)
__instance_size__
(in
ChainIsntCAP
)
_protocols_cryst_
(in
rosetta.protocols.cryst
)
__init__()
(in
__CPP_AssembleLinkerMover__
)
__instance_size__
(in
ChainIsntCreatorAP
)
_protocols_cyclic_peptide_
(in
rosetta.protocols.cyclic_peptide
)
__init__()
(in
__CPP_CombineChainsMover__
)
__instance_size__
(in
ChainIsntCreatorCAP
)
_protocols_ddg_
(in
rosetta.protocols.ddg
)
__init__()
(in
__CPP_PostDockAssemblyScorer__
)
__instance_size__
(in
DisallowIfNonnativeAP
)
_protocols_denovo_design_
(in
rosetta.protocols.denovo_design
)
__init__()
(in
BfactorFittingMover
)
__instance_size__
(in
DisallowIfNonnativeCAP
)
_protocols_denovo_design_filters_
(in
rosetta.protocols.denovo_design.filters
)
__init__()
(in
BfactorFittingMoverAP
)
__instance_size__
(in
DisallowIfNonnativeCreatorAP
)
_protocols_denovo_design_movers_
(in
rosetta.protocols.denovo_design.movers
)
__init__()
(in
BfactorFittingMoverCAP
)
__instance_size__
(in
DisallowIfNonnativeCreatorCAP
)
_protocols_design_opt_
(in
rosetta.protocols.design_opt
)
__init__()
(in
BfactorFittingMoverCreator
)
__instance_size__
(in
DisallowIfNonnativeRLTAP
)
_protocols_dna_
(in
rosetta.protocols.dna
)
__init__()
(in
BfactorFittingMoverCreatorAP
)
__instance_size__
(in
DisallowIfNonnativeRLTCAP
)
_protocols_docking_
(in
rosetta.protocols.docking
)
__init__()
(in
BfactorFittingMoverCreatorCAP
)
__instance_size__
(in
DisallowIfNonnativeRLTCreatorAP
)
_protocols_docking_membrane_
(in
rosetta.protocols.docking.membrane
)
__init__()
(in
BfactorMultifunc
)
__instance_size__
(in
DisallowIfNonnativeRLTCreatorCAP
)
_protocols_docking_stateless_
(in
rosetta.protocols.docking.stateless
)
__init__()
(in
BfactorMultifuncAP
)
__instance_size__
(in
ExtraChiCutoffAP
)
_protocols_domain_assembly_
(in
rosetta.protocols.domain_assembly
)
__init__()
(in
BfactorMultifuncCAP
)
__instance_size__
(in
ExtraChiCutoffCAP
)
_protocols_electron_density_
(in
rosetta.protocols.electron_density
)
__init__()
(in
DensityMorphingMover
)
__instance_size__
(in
ExtraChiCutoffCreatorAP
)
_protocols_elscripts_
(in
rosetta.protocols.elscripts
)
__init__()
(in
DensityMorphingMoverAP
)
__instance_size__
(in
ExtraChiCutoffCreatorCAP
)
_protocols_elscripts_modules_
(in
rosetta.protocols.elscripts.modules
)
__init__()
(in
DensityMorphingMoverCAP
)
__instance_size__
(in
ExtraRotamersAP
)
_protocols_environment_
(in
rosetta.protocols.environment
)
__init__()
(in
DensityMorphingMoverCreator
)
__instance_size__
(in
ExtraRotamersCAP
)
_protocols_environment_claims_
(in
rosetta.protocols.environment.claims
)
__init__()
(in
DensityMorphingMoverCreatorAP
)
__instance_size__
(in
ExtraRotamersCreatorAP
)
_protocols_enzdes_'
(in rosetta.protocols.enzdes)
__init__()
(in
DensityMorphingMoverCreatorCAP
)
__instance_size__
(in
ExtraRotamersCreatorCAP
)
_protocols_evaluation_
(in
rosetta.protocols.evaluation
)
__init__()
(in
ReportFSC
)
__instance_size__
(in
ExtraRotamersGenericAP
)
_protocols_farna_
(in
rosetta.protocols.farna
)
__init__()
(in
ReportFSCAP
)
__instance_size__
(in
ExtraRotamersGenericCAP
)
_protocols_features_
(in
rosetta.protocols.features
)
__init__()
(in
ReportFSCCAP
)
__instance_size__
(in
ExtraRotamersGenericCreatorAP
)
_protocols_features_helixAssembly_
(in
rosetta.protocols.features.helixAssembly
)
__init__()
(in
ReportFSCCreator
)
__instance_size__
(in
ExtraRotamersGenericCreatorCAP
)
_protocols_features_strand_assembly_
(in
rosetta.protocols.features.strand_assembly
)
__init__()
(in
ReportFSCCreatorAP
)
__instance_size__
(in
IncludeCurrentAP
)
_protocols_fibril_
(in
rosetta.protocols.fibril
)
__init__()
(in
ReportFSCCreatorCAP
)
__instance_size__
(in
IncludeCurrentCAP
)
_protocols_filters_
(in
rosetta.protocols.filters
)
__init__()
(in
ScaleMapIntensities
)
__instance_size__
(in
IncludeCurrentCreatorAP
)
_protocols_fldsgn_
(in
rosetta.protocols.fldsgn
)
__init__()
(in
ScaleMapIntensitiesAP
)
__instance_size__
(in
IncludeCurrentCreatorCAP
)
_protocols_fldsgn_filters_
(in
rosetta.protocols.fldsgn.filters
)
__init__()
(in
ScaleMapIntensitiesCAP
)
__instance_size__
(in
InitializeExtraRotsFromCommandlineAP
)
_protocols_fldsgn_potentials_
(in
rosetta.protocols.fldsgn.potentials
)
__init__()
(in
ScaleMapIntensitiesCreator
)
__instance_size__
(in
InitializeExtraRotsFromCommandlineCAP
)
_protocols_fldsgn_potentials_sspot_
(in
rosetta.protocols.fldsgn.potentials.sspot
)
__init__()
(in
ScaleMapIntensitiesCreatorAP
)
__instance_size__
(in
InitializeExtraRotsFromCommandlineCreatorAP
)
_protocols_fldsgn_topology_
(in
rosetta.protocols.fldsgn.topology
)
__init__()
(in
ScaleMapIntensitiesCreatorCAP
)
__instance_size__
(in
InitializeExtraRotsFromCommandlineCreatorCAP
)
_protocols_flexpack_
(in
rosetta.protocols.flexpack
)
__init__()
(in
SetupForDensityScoringMover
)
__instance_size__
(in
InitializeFromCommandlineAP
)
_protocols_flexpack_annealer_
(in
rosetta.protocols.flexpack.annealer
)
__init__()
(in
SetupForDensityScoringMoverAP
)
__instance_size__
(in
InitializeFromCommandlineCAP
)
_protocols_flexpack_interaction_graph_
(in
rosetta.protocols.flexpack.interaction_graph
)
__init__()
(in
SetupForDensityScoringMoverCAP
)
__instance_size__
(in
InitializeFromCommandlineCreatorAP
)
_protocols_flexpack_rotamer_set_
(in
rosetta.protocols.flexpack.rotamer_set
)
__init__()
(in
SetupForDensityScoringMoverCreator
)
__instance_size__
(in
InitializeFromCommandlineCreatorCAP
)
_protocols_flexpep_docking_
(in
rosetta.protocols.flexpep_docking
)
__init__()
(in
SetupForDensityScoringMoverCreatorAP
)
__instance_size__
(in
NoRepackDisulfidesAP
)
_protocols_floppy_tail_
(in
rosetta.protocols.floppy_tail
)
__init__()
(in
SetupForDensityScoringMoverCreatorCAP
)
__instance_size__
(in
NoRepackDisulfidesCAP
)
_protocols_flxbb_
(in
rosetta.protocols.flxbb
)
__init__()
(in
__CPP_BfactorFittingMoverCreator__
)
__instance_size__
(in
NoRepackDisulfidesCreatorAP
)
_protocols_forge_
(in
rosetta.protocols.forge
)
__init__()
(in
__CPP_BfactorFittingMover__
)
__instance_size__
(in
NoRepackDisulfidesCreatorCAP
)
_protocols_forge_build_'
(in rosetta.protocols.forge.build)
__init__()
(in
__CPP_DensityMorphingMoverCreator__
)
__instance_size__
(in
NoResFilterAP
)
_protocols_forge_build_SegmentInsertConnectionScheme_
(in
rosetta.protocols.forge.build.SegmentInsertConnectionScheme
)
__init__()
(in
__CPP_DensityMorphingMover__
)
__instance_size__
(in
NoResFilterCAP
)
_protocols_forge_components_
(in
rosetta.protocols.forge.components
)
__init__()
(in
__CPP_ReportFSCCreator__
)
__instance_size__
(in
NoResFilterCreatorAP
)
_protocols_forge_constraints_'
(in rosetta.protocols.forge.constraints)
__init__()
(in
__CPP_ReportFSC__
)
__instance_size__
(in
NoResFilterCreatorCAP
)
_protocols_forge_methods_
(in
rosetta.protocols.forge.methods
)
__init__()
(in
__CPP_ScaleMapIntensitiesCreator__
)
__instance_size__
(in
OperateOnCertainResiduesAP
)
_protocols_forge_remodel_'
(in rosetta.protocols.forge.remodel)
__init__()
(in
__CPP_ScaleMapIntensities__
)
__instance_size__
(in
OperateOnCertainResiduesCAP
)
_protocols_frag_picker_
(in
rosetta.protocols.frag_picker
)
__init__()
(in
__CPP_SetupForDensityScoringMoverCreator__
)
__instance_size__
(in
OperateOnCertainResiduesCreatorAP
)
_protocols_frag_picker_nonlocal_
(in
rosetta.protocols.frag_picker.nonlocal
)
__init__()
(in
__CPP_SetupForDensityScoringMover__
)
__instance_size__
(in
OperateOnCertainResiduesCreatorCAP
)
_protocols_frag_picker_quota_
(in
rosetta.protocols.frag_picker.quota
)
__init__()
(in
AutoCutData
)
__instance_size__
(in
OperateOnResidueSubsetAP
)
_protocols_frag_picker_scores_
(in
rosetta.protocols.frag_picker.scores
)
__init__()
(in
AutoCutDataAP
)
__instance_size__
(in
OperateOnResidueSubsetCAP
)
_protocols_frags_
(in
rosetta.protocols.frags
)
__init__()
(in
AutoCutDataCAP
)
__instance_size__
(in
OperateOnResidueSubsetCreatorAP
)
_protocols_generalized_kinematic_closure_
(in
rosetta.protocols.generalized_kinematic_closure
)
__init__()
(in
AutoCutDataCreator
)
__instance_size__
(in
OperateOnResidueSubsetCreatorCAP
)
_protocols_generalized_kinematic_closure_filter_
(in
rosetta.protocols.generalized_kinematic_closure.filter
)
__init__()
(in
AutoCutDataCreatorAP
)
__instance_size__
(in
OptCysHGAP
)
_protocols_generalized_kinematic_closure_perturber_
(in
rosetta.protocols.generalized_kinematic_closure.perturber
)
__init__()
(in
AutoCutDataCreatorCAP
)
__instance_size__
(in
OptCysHGCAP
)
_protocols_generalized_kinematic_closure_selector_
(in
rosetta.protocols.generalized_kinematic_closure.selector
)
__init__()
(in
ClientMover
)
__instance_size__
(in
OptCysHGCreatorAP
)
_protocols_genetic_algorithm_
(in
rosetta.protocols.genetic_algorithm
)
__init__()
(in
ClientMoverAP
)
__instance_size__
(in
OptCysHGCreatorCAP
)
_protocols_grafting_
(in
rosetta.protocols.grafting
)
__init__()
(in
ClientMoverCAP
)
__instance_size__
(in
OptHAP
)
_protocols_grafting_simple_movers_
(in
rosetta.protocols.grafting.simple_movers
)
__init__()
(in
CoMTrackerCM
)
__instance_size__
(in
OptHCAP
)
_protocols_helical_bundle_
(in
rosetta.protocols.helical_bundle
)
__init__()
(in
CoMTrackerCMAP
)
__instance_size__
(in
OptHCreatorAP
)
_protocols_helical_bundle_parameters_
(in
rosetta.protocols.helical_bundle.parameters
)
__init__()
(in
CoMTrackerCMCAP
)
__instance_size__
(in
OptHCreatorCAP
)
_protocols_helix_capper_
(in
rosetta.protocols.helix_capper
)
__init__()
(in
CoMTrackerCMCreator
)
__instance_size__
(in
PreserveCBetaAP
)
_protocols_hotspot_hashing_
(in
rosetta.protocols.hotspot_hashing
)
__init__()
(in
CoMTrackerCMCreatorAP
)
__instance_size__
(in
PreserveCBetaCAP
)
_protocols_hotspot_hashing_movers_
(in
rosetta.protocols.hotspot_hashing.movers
)
__init__()
(in
CoMTrackerCMCreatorCAP
)
__instance_size__
(in
PreserveCBetaCreatorAP
)
_protocols_hybridization_
(in
rosetta.protocols.hybridization
)
__init__()
(in
DofUnlock
)
__instance_size__
(in
PreserveCBetaCreatorCAP
)
_protocols_idealize_
(in
rosetta.protocols.idealize
)
__init__()
(in
DofUnlockAP
)
__instance_size__
(in
PreventRepackingAP
)
_protocols_indexed_structure_store_
(in
rosetta.protocols.indexed_structure_store
)
__init__()
(in
DofUnlockCAP
)
__instance_size__
(in
PreventRepackingCAP
)
_protocols_indexed_structure_store_filters_
(in
rosetta.protocols.indexed_structure_store.filters
)
__init__()
(in
EXCN_Env_Passport
)
__instance_size__
(in
PreventRepackingCreatorAP
)
_protocols_init_
(in
rosetta.protocols.init
)
__init__()
(in
EXCN_Env_PassportAP
)
__instance_size__
(in
PreventRepackingCreatorCAP
)
_protocols_inputter_
(in
rosetta.protocols.inputter
)
__init__()
(in
EXCN_Env_PassportCAP
)
__instance_size__
(in
PreventRepackingRLTAP
)
_protocols_interface_
(in
rosetta.protocols.interface
)
__init__()
(in
EXCN_Env_Security_Exception
)
__instance_size__
(in
PreventRepackingRLTCAP
)
_protocols_jd2_
(in
rosetta.protocols.jd2
)
__init__()
(in
EXCN_Env_Security_ExceptionAP
)
__instance_size__
(in
PreventRepackingRLTCreatorAP
)
_protocols_jd2_archive_
(in
rosetta.protocols.jd2.archive
)
__init__()
(in
EXCN_Env_Security_ExceptionCAP
)
__instance_size__
(in
PreventRepackingRLTCreatorCAP
)
_protocols_jd2_parser_
(in
rosetta.protocols.jd2.parser
)
__init__()
(in
EnvClaimBroker
)
__instance_size__
(in
ReadResfileAP
)
_protocols_jobdist_
(in
rosetta.protocols.jobdist
)
__init__()
(in
EnvClaimBrokerAP
)
__instance_size__
(in
ReadResfileAndObeyLengthEventsAP
)
_protocols_jumping_
(in
rosetta.protocols.jumping
)
__init__()
(in
EnvClaimBrokerCAP
)
__instance_size__
(in
ReadResfileAndObeyLengthEventsCAP
)
_protocols_kinematic_closure_
(in
rosetta.protocols.kinematic_closure
)
__init__()
(in
EnvMover
)
__instance_size__
(in
ReadResfileAndObeyLengthEventsCreatorAP
)
_protocols_kinematic_closure_perturbers_
(in
rosetta.protocols.kinematic_closure.perturbers
)
__init__()
(in
EnvMoverAP
)
__instance_size__
(in
ReadResfileAndObeyLengthEventsCreatorCAP
)
_protocols_kinematic_closure_pivot_pickers_
(in
rosetta.protocols.kinematic_closure.pivot_pickers
)
__init__()
(in
EnvMoverCAP
)
__instance_size__
(in
ReadResfileCAP
)
_protocols_kinematic_closure_solution_pickers_
(in
rosetta.protocols.kinematic_closure.solution_pickers
)
__init__()
(in
EnvMoverCreator
)
__instance_size__
(in
ReadResfileCreatorAP
)
_protocols_kinmatch_
(in
rosetta.protocols.kinmatch
)
__init__()
(in
EnvMoverCreatorAP
)
__instance_size__
(in
ReadResfileCreatorCAP
)
_protocols_ligand_docking_
(in
rosetta.protocols.ligand_docking
)
__init__()
(in
EnvMoverCreatorCAP
)
__instance_size__
(in
ReplicateTaskAP
)
_protocols_ligand_docking_ligand_options_
(in
rosetta.protocols.ligand_docking.ligand_options
)
__init__()
(in
Environment
)
__instance_size__
(in
ReplicateTaskCAP
)
_protocols_ligand_docking_rdf_
(in
rosetta.protocols.ligand_docking.rdf
)
__init__()
(in
EnvironmentAP
)
__instance_size__
(in
ReplicateTaskCreatorAP
)
_protocols_loop_build_
(in
rosetta.protocols.loop_build
)
__init__()
(in
EnvironmentCAP
)
__instance_size__
(in
ReplicateTaskCreatorCAP
)
_protocols_loop_modeling_
(in
rosetta.protocols.loop_modeling
)
__init__()
(in
ProtectedConformation
)
__instance_size__
(in
ResFilter
)
_protocols_loop_modeling_refiners_
(in
rosetta.protocols.loop_modeling.refiners
)
__init__()
(in
ProtectedConformationAP
)
__instance_size__
(in
ResFilterAP
)
_protocols_loop_modeling_samplers_
(in
rosetta.protocols.loop_modeling.samplers
)
__init__()
(in
ProtectedConformationCAP
)
__instance_size__
(in
ResFilterCAP
)
_protocols_loop_modeling_utilities_
(in
rosetta.protocols.loop_modeling.utilities
)
__init__()
(in
ScriptCM
)
__instance_size__
(in
ResFilterCompositionAP
)
_protocols_loophash_
(in
rosetta.protocols.loophash
)
__init__()
(in
ScriptCMAP
)
__instance_size__
(in
ResFilterCompositionCAP
)
_protocols_loops_
(in
rosetta.protocols.loops
)
__init__()
(in
ScriptCMCAP
)
__instance_size__
(in
ResFilterCreator
)
_protocols_loops_loop_closure_
(in
rosetta.protocols.loops.loop_closure
)
__init__()
(in
ScriptCMCreator
)
__instance_size__
(in
ResFilterCreatorAP
)
_protocols_loops_loop_closure_ccd_
(in
rosetta.protocols.loops.loop_closure.ccd
)
__init__()
(in
ScriptCMCreatorAP
)
__instance_size__
(in
ResFilterCreatorCAP
)
_protocols_loops_loop_closure_kinematic_closure_
(in
rosetta.protocols.loops.loop_closure.kinematic_closure
)
__init__()
(in
ScriptCMCreatorCAP
)
__instance_size__
(in
ResFilterFactoryAP
)
_protocols_loops_loop_mover_
(in
rosetta.protocols.loops.loop_mover
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
__instance_size__
(in
ResFilterFactoryCAP
)
_protocols_loops_loop_mover_perturb_
(in
rosetta.protocols.loops.loop_mover.perturb
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
__instance_size__
(in
ResLvlTaskOperation
)
_protocols_loops_loop_mover_refine_
(in
rosetta.protocols.loops.loop_mover.refine
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
__instance_size__
(in
ResLvlTaskOperationAP
)
_protocols_loops_loops_definers_
(in
rosetta.protocols.loops.loops_definers
)
__init__()
(in
__CPP_AutoCutDataCreator__
)
__instance_size__
(in
ResLvlTaskOperationCAP
)
_protocols_make_rot_lib_
(in
rosetta.protocols.make_rot_lib
)
__init__()
(in
__CPP_AutoCutData__
)
__instance_size__
(in
ResLvlTaskOperationCreator
)
_protocols_match_
(in
rosetta.protocols.match
)
__init__()
(in
__CPP_ClientMover__
)
__instance_size__
(in
ResLvlTaskOperationCreatorAP
)
_protocols_match_downstream_
(in
rosetta.protocols.match.downstream
)
__init__()
(in
__CPP_CoMTrackerCMCreator__
)
__instance_size__
(in
ResLvlTaskOperationCreatorCAP
)
_protocols_match_output_
(in
rosetta.protocols.match.output
)
__init__()
(in
__CPP_CoMTrackerCM__
)
__instance_size__
(in
ResLvlTaskOperationFactoryAP
)
_protocols_match_upstream_
(in
rosetta.protocols.match.upstream
)
__init__()
(in
__CPP_EnvMoverCreator__
)
__instance_size__
(in
ResLvlTaskOperationFactoryCAP
)
_protocols_matdes_
(in
rosetta.protocols.matdes
)
__init__()
(in
__CPP_EnvMover__
)
__instance_size__
(in
ResidueHasPropertyAP
)
_protocols_md_
(in
rosetta.protocols.md
)
__init__()
(in
__CPP_ProtectedConformation__
)
__instance_size__
(in
ResidueHasPropertyCAP
)
_protocols_medal_
(in
rosetta.protocols.medal
)
__init__()
(in
__CPP_ScriptCMCreator__
)
__instance_size__
(in
ResidueHasPropertyCreatorAP
)
_protocols_membrane_
(in
rosetta.protocols.membrane
)
__init__()
(in
__CPP_ScriptCM__
)
__instance_size__
(in
ResidueHasPropertyCreatorCAP
)
_protocols_membrane_geometry_
(in
rosetta.protocols.membrane.geometry
)
__init__()
(in
ClaimStrength
)
__instance_size__
(in
ResidueIndexIsAP
)
_protocols_membrane_io_
(in
rosetta.protocols.membrane.io
)
__init__()
(in
ClaimStrengthAP
)
__instance_size__
(in
ResidueIndexIsCAP
)
_protocols_membrane_relax_
(in
rosetta.protocols.membrane.relax
)
__init__()
(in
ClaimStrengthCAP
)
__instance_size__
(in
ResidueIndexIsCreatorAP
)
_protocols_membrane_symmetry_
(in
rosetta.protocols.membrane.symmetry
)
__init__()
(in
CutBiasClaim
)
__instance_size__
(in
ResidueIndexIsCreatorCAP
)
_protocols_membrane_visualize_
(in
rosetta.protocols.membrane.visualize
)
__init__()
(in
CutBiasClaimAP
)
__instance_size__
(in
ResidueIndexIsntAP
)
_protocols_metal_interface_
(in
rosetta.protocols.metal_interface
)
__init__()
(in
CutBiasClaimCAP
)
__instance_size__
(in
ResidueIndexIsntCAP
)
_protocols_motif_grafting_
(in
rosetta.protocols.motif_grafting
)
__init__()
(in
CutBiasElement
)
__instance_size__
(in
ResidueIndexIsntCreatorAP
)
_protocols_motif_grafting_movers_
(in
rosetta.protocols.motif_grafting.movers
)
__init__()
(in
CutBiasElementAP
)
__instance_size__
(in
ResidueIndexIsntCreatorCAP
)
_protocols_motifs_
(in
rosetta.protocols.motifs
)
__init__()
(in
CutBiasElementCAP
)
__instance_size__
(in
ResidueLacksPropertyAP
)
_protocols_moves_
(in
rosetta.protocols.moves
)
__init__()
(in
CutElement
)
__instance_size__
(in
ResidueLacksPropertyCAP
)
_protocols_moves_mc_convergence_checks_
(in
rosetta.protocols.moves.mc_convergence_checks
)
__init__()
(in
CutElementAP
)
__instance_size__
(in
ResidueLacksPropertyCreatorAP
)
_protocols_mpi_refinement_
(in
rosetta.protocols.mpi_refinement
)
__init__()
(in
CutElementCAP
)
__instance_size__
(in
ResidueLacksPropertyCreatorCAP
)
_protocols_multistate_design_'
(in rosetta.protocols.multistate_design)
__init__()
(in
DOFElement
)
__instance_size__
(in
ResidueName3IsAP
)
_protocols_ncbb_
(in
rosetta.protocols.ncbb
)
__init__()
(in
DOFElementAP
)
__instance_size__
(in
ResidueName3IsCAP
)
_protocols_ncbb_oop_
(in
rosetta.protocols.ncbb.oop
)
__init__()
(in
DOFElementCAP
)
__instance_size__
(in
ResidueName3IsCreatorAP
)
_protocols_neighbor_
(in
rosetta.protocols.neighbor
)
__init__()
(in
EnvClaim
)
__instance_size__
(in
ResidueName3IsCreatorCAP
)
_protocols_noesy_assign_
(in
rosetta.protocols.noesy_assign
)
__init__()
(in
EnvClaimAP
)
__instance_size__
(in
ResidueName3IsntAP
)
_protocols_nonlocal_
(in
rosetta.protocols.nonlocal
)
__init__()
(in
EnvClaimCAP
)
__instance_size__
(in
ResidueName3IsntCAP
)
_protocols_normalmode_
(in
rosetta.protocols.normalmode
)
__init__()
(in
EnvLabelSelector
)
__instance_size__
(in
ResidueName3IsntCreatorAP
)
_protocols_optimize_weights_
(in
rosetta.protocols.optimize_weights
)
__init__()
(in
EnvLabelSelectorAP
)
__instance_size__
(in
ResidueName3IsntCreatorCAP
)
_protocols_outputter_
(in
rosetta.protocols.outputter
)
__init__()
(in
EnvLabelSelectorCAP
)
__instance_size__
(in
ResiduePDBIndexIsAP
)
_protocols_pack_daemon_
(in
rosetta.protocols.pack_daemon
)
__init__()
(in
JumpClaim
)
__instance_size__
(in
ResiduePDBIndexIsCAP
)
_protocols_pb_potential_
(in
rosetta.protocols.pb_potential
)
__init__()
(in
JumpClaimAP
)
__instance_size__
(in
ResiduePDBIndexIsCreatorAP
)
_protocols_pmut_scan_
(in
rosetta.protocols.pmut_scan
)
__init__()
(in
JumpClaimCAP
)
__instance_size__
(in
ResiduePDBIndexIsCreatorCAP
)
_protocols_pockets_
(in
rosetta.protocols.pockets
)
__init__()
(in
JumpElement
)
__instance_size__
(in
ResiduePDBIndexIsntAP
)
_protocols_pose_reporters_'
(in rosetta.protocols.pose_reporters)
__init__()
(in
JumpElementAP
)
__instance_size__
(in
ResiduePDBIndexIsntCAP
)
_protocols_pose_selectors_'
(in rosetta.protocols.pose_selectors)
__init__()
(in
JumpElementCAP
)
__instance_size__
(in
ResiduePDBIndexIsntCreatorAP
)
_protocols_protein_interface_design_
(in
rosetta.protocols.protein_interface_design
)
__init__()
(in
ResidueElement
)
__instance_size__
(in
ResiduePDBIndexIsntCreatorCAP
)
_protocols_protein_interface_design_filters_
(in
rosetta.protocols.protein_interface_design.filters
)
__init__()
(in
ResidueElementAP
)
__instance_size__
(in
ResiduePDBInfoHasLabelAP
)
_protocols_protein_interface_design_movers_
(in
rosetta.protocols.protein_interface_design.movers
)
__init__()
(in
ResidueElementCAP
)
__instance_size__
(in
ResiduePDBInfoHasLabelCAP
)
_protocols_qsar_
(in
rosetta.protocols.qsar
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
__instance_size__
(in
ResiduePDBInfoHasLabelCreatorAP
)
_protocols_qsar_scoring_grid_
(in
rosetta.protocols.qsar.scoring_grid
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
__instance_size__
(in
ResiduePDBInfoHasLabelCreatorCAP
)
_protocols_rbsegment_relax_
(in
rosetta.protocols.rbsegment_relax
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
__instance_size__
(in
ResiduePDBInfoLacksLabelAP
)
_protocols_relax_
(in
rosetta.protocols.relax
)
__init__()
(in
TorsionClaim
)
__instance_size__
(in
ResiduePDBInfoLacksLabelCAP
)
_protocols_relax_membrane_
(in
rosetta.protocols.relax.membrane
)
__init__()
(in
TorsionClaimAP
)
__instance_size__
(in
ResiduePDBInfoLacksLabelCreatorAP
)
_protocols_rigid_
(in
rosetta.protocols.rigid
)
__init__()
(in
TorsionClaimCAP
)
__instance_size__
(in
ResiduePDBInfoLacksLabelCreatorCAP
)
_protocols_rosetta_scripts_
(in
rosetta.protocols.rosetta_scripts
)
__init__()
(in
VirtResClaim
)
__instance_size__
(in
ResidueTypeFilterAP
)
_protocols_rotamer_recovery_
(in
rosetta.protocols.rotamer_recovery
)
__init__()
(in
VirtResClaimAP
)
__instance_size__
(in
ResidueTypeFilterCAP
)
_protocols_RotamerDump_
(in
rosetta.protocols.RotamerDump
)
__init__()
(in
VirtResClaimCAP
)
__instance_size__
(in
ResidueTypeFilterCreatorAP
)
_protocols_rpc_
(in
rosetta.protocols.rpc
)
__init__()
(in
XYZClaim
)
__instance_size__
(in
ResidueTypeFilterCreatorCAP
)
_protocols_sasa_scores_
(in
rosetta.protocols.sasa_scores
)
__init__()
(in
XYZClaimAP
)
__instance_size__
(in
RestrictAbsentCanonicalAASAP
)
_protocols_scoring_
(in
rosetta.protocols.scoring
)
__init__()
(in
XYZClaimCAP
)
__instance_size__
(in
RestrictAbsentCanonicalAASCAP
)
_protocols_scoring_methods_
(in
rosetta.protocols.scoring.methods
)
__init__()
(in
__CPP_CutBiasClaim__
)
__instance_size__
(in
RestrictAbsentCanonicalAASCreatorAP
)
_protocols_scoring_methods_pcs2_
(in
rosetta.protocols.scoring.methods.pcs2
)
__init__()
(in
__CPP_EnvClaim__
)
__instance_size__
(in
RestrictAbsentCanonicalAASCreatorCAP
)
_protocols_scoring_methods_pcs_
(in
rosetta.protocols.scoring.methods.pcs
)
__init__()
(in
__CPP_EnvLabelSelector__
)
__instance_size__
(in
RestrictAbsentCanonicalAASRLTAP
)
_protocols_scoring_methods_pcsTs1_
(in
rosetta.protocols.scoring.methods.pcsTs1
)
__init__()
(in
__CPP_JumpClaim__
)
__instance_size__
(in
RestrictAbsentCanonicalAASRLTCAP
)
_protocols_scoring_methods_pcsTs2_
(in
rosetta.protocols.scoring.methods.pcsTs2
)
__init__()
(in
__CPP_TorsionClaim__
)
__instance_size__
(in
RestrictAbsentCanonicalAASRLTCreatorAP
)
_protocols_scoring_methods_pcsTs3_
(in
rosetta.protocols.scoring.methods.pcsTs3
)
__init__()
(in
__CPP_VirtResClaim__
)
__instance_size__
(in
RestrictAbsentCanonicalAASRLTCreatorCAP
)
_protocols_scoring_methods_pcsTs4_
(in
rosetta.protocols.scoring.methods.pcsTs4
)
__init__()
(in
__CPP_XYZClaim__
)
__instance_size__
(in
RestrictResidueToRepackingAP
)
_protocols_scoring_methods_saxs_
(in
rosetta.protocols.scoring.methods.saxs
)
__init__()
(in
EnzdesBaseProtocolAP
)
__instance_size__
(in
RestrictResidueToRepackingCAP
)
_protocols_seeded_abinitio_
(in
rosetta.protocols.seeded_abinitio
)
__init__()
(in
EnzdesBaseProtocolCAP
)
__instance_size__
(in
RestrictResidueToRepackingCreatorAP
)
_protocols_sic_dock_
(in
rosetta.protocols.sic_dock
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
__instance_size__
(in
RestrictResidueToRepackingCreatorCAP
)
_protocols_sic_dock_scores_
(in
rosetta.protocols.sic_dock.scores
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
__instance_size__
(in
RestrictToRepackingAP
)
_protocols_simple_filters_
(in
rosetta.protocols.simple_filters
)
__init__()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
__instance_size__
(in
RestrictToRepackingCAP
)
_protocols_simple_moves_
(in
rosetta.protocols.simple_moves
)
__init__()
(in
AlignEvaluator
)
__instance_size__
(in
RestrictToRepackingCreatorAP
)
_protocols_simple_moves_asym_fold_and_dock_
(in
rosetta.protocols.simple_moves.asym_fold_and_dock
)
__init__()
(in
AlignEvaluatorAP
)
__instance_size__
(in
RestrictToRepackingCreatorCAP
)
_protocols_simple_moves_bin_transitions_
(in
rosetta.protocols.simple_moves.bin_transitions
)
__init__()
(in
AlignEvaluatorCAP
)
__instance_size__
(in
RestrictToRepackingRLTAP
)
_protocols_simple_moves_chiral_
(in
rosetta.protocols.simple_moves.chiral
)
__init__()
(in
EvaluatorCreator
)
__instance_size__
(in
RestrictToRepackingRLTCAP
)
_protocols_simple_moves_hbs_
(in
rosetta.protocols.simple_moves.hbs
)
__init__()
(in
EvaluatorCreatorAP
)
__instance_size__
(in
RestrictToRepackingRLTCreatorAP
)
_protocols_simple_moves_oop_
(in
rosetta.protocols.simple_moves.oop
)
__init__()
(in
EvaluatorCreatorCAP
)
__instance_size__
(in
RestrictToRepackingRLTCreatorCAP
)
_protocols_simple_moves_rational_mc_
(in
rosetta.protocols.simple_moves.rational_mc
)
__init__()
(in
EvaluatorFactory
)
__instance_size__
(in
RestrictYSDesignAP
)
_protocols_simple_moves_sidechain_moves_
(in
rosetta.protocols.simple_moves.sidechain_moves
)
__init__()
(in
EvaluatorFactoryAP
)
__instance_size__
(in
RestrictYSDesignCAP
)
_protocols_simple_moves_symmetry_
(in
rosetta.protocols.simple_moves.symmetry
)
__init__()
(in
EvaluatorFactoryCAP
)
__instance_size__
(in
RestrictYSDesignCreatorAP
)
_protocols_sparta_
(in
rosetta.protocols.sparta
)
__init__()
(in
MetaPoseEvaluator
)
__instance_size__
(in
RestrictYSDesignCreatorCAP
)
_protocols_ss_prediction_
(in
rosetta.protocols.ss_prediction
)
__init__()
(in
MetaPoseEvaluatorAP
)
__instance_size__
(in
RotamerExplosionAP
)
_protocols_star_
(in
rosetta.protocols.star
)
__init__()
(in
MetaPoseEvaluatorCAP
)
__instance_size__
(in
RotamerExplosionCAP
)
_protocols_stepwise_
(in
rosetta.protocols.stepwise
)
__init__()
(in
PCA
)
__instance_size__
(in
RotamerExplosionCreatorAP
)
_protocols_stepwise_legacy_
(in
rosetta.protocols.stepwise.legacy
)
__init__()
(in
PCAAP
)
__instance_size__
(in
RotamerExplosionCreatorCAP
)
_protocols_stepwise_legacy_modeler_
(in
rosetta.protocols.stepwise.legacy.modeler
)
__init__()
(in
PCACAP
)
__instance_size__
(in
SetRotamerCouplingsAP
)
_protocols_stepwise_legacy_modeler_protein_
(in
rosetta.protocols.stepwise.legacy.modeler.protein
)
__init__()
(in
PoseEvaluator
)
__instance_size__
(in
SetRotamerCouplingsCAP
)
_protocols_stepwise_legacy_modeler_rna_'
(in rosetta.protocols.stepwise.legacy.modeler.rna)
__init__()
(in
PoseEvaluatorAP
)
__instance_size__
(in
SetRotamerCouplingsCreatorAP
)
_protocols_stepwise_legacy_modeler_rna_connection_
(in
rosetta.protocols.stepwise.legacy.modeler.rna.connection
)
__init__()
(in
PoseEvaluatorCAP
)
__instance_size__
(in
SetRotamerCouplingsCreatorCAP
)
_protocols_stepwise_legacy_screener_'
(in rosetta.protocols.stepwise.legacy.screener)
__init__()
(in
SingleValuePoseEvaluator_SSize
)
__instance_size__
(in
SetRotamerLinksAP
)
_protocols_stepwise_modeler_
(in
rosetta.protocols.stepwise.modeler
)
__init__()
(in
SingleValuePoseEvaluator_SSizeAP
)
__instance_size__
(in
SetRotamerLinksCAP
)
_protocols_stepwise_modeler_align_
(in
rosetta.protocols.stepwise.modeler.align
)
__init__()
(in
SingleValuePoseEvaluator_SSizeCAP
)
__instance_size__
(in
SetRotamerLinksCreatorAP
)
_protocols_stepwise_modeler_movemap_
(in
rosetta.protocols.stepwise.modeler.movemap
)
__init__()
(in
SingleValuePoseEvaluator_Size
)
__instance_size__
(in
SetRotamerLinksCreatorCAP
)
_protocols_stepwise_modeler_options_
(in
rosetta.protocols.stepwise.modeler.options
)
__init__()
(in
SingleValuePoseEvaluator_SizeAP
)
__instance_size__
(in
SingletonBase_T_core_pack_task_operation_ResLvlTaskOperationFactory_T
)
_protocols_stepwise_modeler_packer_
(in
rosetta.protocols.stepwise.modeler.packer
)
__init__()
(in
SingleValuePoseEvaluator_SizeCAP
)
__instance_size__
(in
SingletonBase_T_core_pack_task_operation_ResLvlTaskOperationFactory_TAP
)
_protocols_stepwise_modeler_polar_hydrogens_
(in
rosetta.protocols.stepwise.modeler.polar_hydrogens
)
__init__()
(in
SingleValuePoseEvaluator_T_double_T
)
__instance_size__
(in
SingletonBase_T_core_pack_task_operation_ResLvlTaskOperationFactory_TCAP
)
_protocols_stepwise_modeler_precomputed_
(in
rosetta.protocols.stepwise.modeler.precomputed
)
__init__()
(in
SingleValuePoseEvaluator_T_double_TAP
)
__instance_size__
(in
TaskOperation
)
_protocols_stepwise_modeler_protein_
(in
rosetta.protocols.stepwise.modeler.protein
)
__init__()
(in
SingleValuePoseEvaluator_T_double_TCAP
)
__instance_size__
(in
TaskOperationAP
)
_protocols_stepwise_modeler_protein_beta_
(in
rosetta.protocols.stepwise.modeler.protein.beta
)
__init__()
(in
SingleValuePoseEvaluator_T_long_int_T
)
__instance_size__
(in
TaskOperationCAP
)
_protocols_stepwise_modeler_protein_checker_
(in
rosetta.protocols.stepwise.modeler.protein.checker
)
__init__()
(in
SingleValuePoseEvaluator_T_long_int_TAP
)
__instance_size__
(in
TaskOperationCreator
)
_protocols_stepwise_modeler_protein_loop_close_
(in
rosetta.protocols.stepwise.modeler.protein.loop_close
)
__init__()
(in
SingleValuePoseEvaluator_T_long_int_TCAP
)
__instance_size__
(in
TaskOperationCreatorAP
)
_protocols_stepwise_modeler_rna_
(in
rosetta.protocols.stepwise.modeler.rna
)
__init__()
(in
SingleValuePoseEvaluator_T_long_unsigned_int_T
)
__instance_size__
(in
TaskOperationCreatorCAP
)
_protocols_stepwise_modeler_rna_bulge_
(in
rosetta.protocols.stepwise.modeler.rna.bulge
)
__init__()
(in
SingleValuePoseEvaluator_T_long_unsigned_int_TAP
)
__instance_size__
(in
TaskOperationFactoryAP
)
_protocols_stepwise_modeler_rna_checker_
(in
rosetta.protocols.stepwise.modeler.rna.checker
)
__init__()
(in
SingleValuePoseEvaluator_T_long_unsigned_int_TCAP
)
__instance_size__
(in
TaskOperationFactoryCAP
)
_protocols_stepwise_modeler_rna_helix_
(in
rosetta.protocols.stepwise.modeler.rna.helix
)
__init__()
(in
SingletonBase_T_protocols_evaluation_EvaluatorFactory_T
)
__instance_size__
(in
AndResidueSelectorAP
)
_protocols_stepwise_modeler_rna_o2prime_
(in
rosetta.protocols.stepwise.modeler.rna.o2prime
)
__init__()
(in
SingletonBase_T_protocols_evaluation_EvaluatorFactory_TAP
)
__instance_size__
(in
AndResidueSelectorCAP
)
_protocols_stepwise_modeler_rna_phosphate_
(in
rosetta.protocols.stepwise.modeler.rna.phosphate
)
__init__()
(in
SingletonBase_T_protocols_evaluation_EvaluatorFactory_TCAP
)
__instance_size__
(in
AndResidueSelectorCreatorAP
)
_protocols_stepwise_modeler_rna_rigid_body_
(in
rosetta.protocols.stepwise.modeler.rna.rigid_body
)
__init__()
(in
TimeEvaluator
)
__instance_size__
(in
AndResidueSelectorCreatorCAP
)
_protocols_stepwise_modeler_rna_sugar_
(in
rosetta.protocols.stepwise.modeler.rna.sugar
)
__init__()
(in
TimeEvaluatorAP
)
__instance_size__
(in
ChainSelectorAP
)
_protocols_stepwise_modeler_working_parameters_
(in
rosetta.protocols.stepwise.modeler.working_parameters
)
__init__()
(in
TimeEvaluatorCAP
)
__instance_size__
(in
ChainSelectorCAP
)
_protocols_stepwise_monte_carlo_
(in
rosetta.protocols.stepwise.monte_carlo
)
__init__()
(in
__CPP_AlignEvaluator__
)
__instance_size__
(in
ChainSelectorCreatorAP
)
_protocols_stepwise_monte_carlo_mover_
(in
rosetta.protocols.stepwise.monte_carlo.mover
)
__init__()
(in
__CPP_EvaluatorCreator__
)
__instance_size__
(in
ChainSelectorCreatorCAP
)
_protocols_stepwise_monte_carlo_options_
(in
rosetta.protocols.stepwise.monte_carlo.options
)
__init__()
(in
__CPP_MetaPoseEvaluator__
)
__instance_size__
(in
ClashBasedRepackShellSelectorAP
)
_protocols_stepwise_monte_carlo_rna_
(in
rosetta.protocols.stepwise.monte_carlo.rna
)
__init__()
(in
__CPP_PoseEvaluator__
)
__instance_size__
(in
ClashBasedRepackShellSelectorCAP
)
_protocols_stepwise_monte_carlo_submotif_
(in
rosetta.protocols.stepwise.monte_carlo.submotif
)
__init__()
(in
__CPP_SingleValuePoseEvaluator
__
)
__instance_size__
(in
ClashBasedRepackShellSelectorCreatorAP
)
_protocols_stepwise_options_
(in
rosetta.protocols.stepwise.options
)
__init__()
(in
__CPP_SingleValuePoseEvaluator
__
)
__instance_size__
(in
ClashBasedRepackShellSelectorCreatorCAP
)
_protocols_stepwise_sampler_
(in
rosetta.protocols.stepwise.sampler
)
__init__()
(in
__CPP_SingleValuePoseEvaluator
__
)
__instance_size__
(in
InterGroupInterfaceByVectorSelectorAP
)
_protocols_stepwise_sampler_copy_dofs_
(in
rosetta.protocols.stepwise.sampler.copy_dofs
)
__init__()
(in
__CPP_TimeEvaluator__
)
__instance_size__
(in
InterGroupInterfaceByVectorSelectorCAP
)
_protocols_stepwise_sampler_input_streams_
(in
rosetta.protocols.stepwise.sampler.input_streams
)
__init__()
(in
BasePairStep
)
__instance_size__
(in
InterGroupInterfaceByVectorSelectorCreatorAP
)
_protocols_stepwise_sampler_protein_
(in
rosetta.protocols.stepwise.sampler.protein
)
__init__()
(in
BasePairStepAP
)
__instance_size__
(in
InterGroupInterfaceByVectorSelectorCreatorCAP
)
_protocols_stepwise_sampler_rigid_body_
(in
rosetta.protocols.stepwise.sampler.rigid_body
)
__init__()
(in
BasePairStepCAP
)
__instance_size__
(in
JumpDownstreamSelectorAP
)
_protocols_stepwise_sampler_rna_
(in
rosetta.protocols.stepwise.sampler.rna
)
__init__()
(in
BasePairStepLibrary
)
__instance_size__
(in
JumpDownstreamSelectorCAP
)
_protocols_stepwise_sampler_screener_
(in
rosetta.protocols.stepwise.sampler.screener
)
__init__()
(in
BasePairStepLibraryAP
)
__instance_size__
(in
JumpDownstreamSelectorCreatorAP
)
_protocols_stepwise_screener_
(in
rosetta.protocols.stepwise.screener
)
__init__()
(in
BasePairStepLibraryCAP
)
__instance_size__
(in
JumpDownstreamSelectorCreatorCAP
)
_protocols_stepwise_setup_
(in
rosetta.protocols.stepwise.setup
)
__init__()
(in
BasePairStepSequence
)
__instance_size__
(in
JumpUpstreamSelectorAP
)
_protocols_surface_docking_
(in
rosetta.protocols.surface_docking
)
__init__()
(in
BasePairStepSequenceAP
)
__instance_size__
(in
JumpUpstreamSelectorCAP
)
_protocols_symmetric_docking_
(in
rosetta.protocols.symmetric_docking
)
__init__()
(in
BasePairStepSequenceCAP
)
__instance_size__
(in
JumpUpstreamSelectorCreatorAP
)
_protocols_symmetric_docking_membrane_
(in
rosetta.protocols.symmetric_docking.membrane
)
__init__()
(in
BasePairType
)
__instance_size__
(in
JumpUpstreamSelectorCreatorCAP
)
_protocols_toolbox_
(in
rosetta.protocols.toolbox
)
__init__()
(in
BasePairTypeAP
)
__instance_size__
(in
NeighborhoodResidueSelectorAP
)
_protocols_toolbox_match_enzdes_util_
(in
rosetta.protocols.toolbox.match_enzdes_util
)
__init__()
(in
BasePairTypeCAP
)
__instance_size__
(in
NeighborhoodResidueSelectorCAP
)
_protocols_toolbox_pose_manipulation_
(in
rosetta.protocols.toolbox.pose_manipulation
)
__init__()
(in
ChunkSet
)
__instance_size__
(in
NeighborhoodResidueSelectorCreatorAP
)
_protocols_toolbox_pose_metric_calculators_
(in
rosetta.protocols.toolbox.pose_metric_calculators
)
__init__()
(in
ChunkSetAP
)
__instance_size__
(in
NeighborhoodResidueSelectorCreatorCAP
)
_protocols_toolbox_rigid_body_
(in
rosetta.protocols.toolbox.rigid_body
)
__init__()
(in
ChunkSetCAP
)
__instance_size__
(in
NotResidueSelectorAP
)
_protocols_toolbox_rotamer_set_operations_
(in
rosetta.protocols.toolbox.rotamer_set_operations
)
__init__()
(in
FragmentLibrary
)
__instance_size__
(in
NotResidueSelectorCAP
)
_protocols_toolbox_sample_around_
(in
rosetta.protocols.toolbox.sample_around
)
__init__()
(in
FragmentLibraryAP
)
__instance_size__
(in
NotResidueSelectorCreatorAP
)
_protocols_toolbox_task_operations_
(in
rosetta.protocols.toolbox.task_operations
)
__init__()
(in
FragmentLibraryCAP
)
__instance_size__
(in
NotResidueSelectorCreatorCAP
)
_protocols_topology_broker_'
(in rosetta.protocols.topology_broker)
__init__()
(in
FullAtomRNA_Fragments
)
__instance_size__
(in
NumNeighborsSelectorAP
)
_protocols_topology_broker_claims_
(in
rosetta.protocols.topology_broker.claims
)
__init__()
(in
FullAtomRNA_FragmentsAP
)
__instance_size__
(in
NumNeighborsSelectorCAP
)
_protocols_topology_broker_weights_
(in
rosetta.protocols.topology_broker.weights
)
__init__()
(in
FullAtomRNA_FragmentsCAP
)
__instance_size__
(in
NumNeighborsSelectorCreatorAP
)
_protocols_trajectory_
(in
rosetta.protocols.trajectory
)
__init__()
(in
MultipleDomainMover
)
__instance_size__
(in
NumNeighborsSelectorCreatorCAP
)
_protocols_unfolded_state_energy_calculator_
(in
rosetta.protocols.unfolded_state_energy_calculator
)
__init__()
(in
MultipleDomainMoverAP
)
__instance_size__
(in
OrResidueSelectorAP
)
_protocols_viewer_
(in
rosetta.protocols.viewer
)
__init__()
(in
MultipleDomainMoverCAP
)
__instance_size__
(in
OrResidueSelectorCAP
)
_protocols_vip_
(in
rosetta.protocols.vip
)
__init__()
(in
RNA_ChunkLibrary
)
__instance_size__
(in
OrResidueSelectorCreatorAP
)
_protocols_wum2_
(in
rosetta.protocols.wum2
)
__init__()
(in
RNA_ChunkLibraryAP
)
__instance_size__
(in
OrResidueSelectorCreatorCAP
)
_protocols_wum_
(in
rosetta.protocols.wum
)
__init__()
(in
RNA_ChunkLibraryCAP
)
__instance_size__
(in
ResidueIndexSelectorAP
)
_python_py_exit_callback
(in
rosetta
)
__init__()
(in
RNA_DeNovoProtocol
)
__instance_size__
(in
ResidueIndexSelectorCAP
)
_read_file()
(in
SilentFileData
)
__init__()
(in
RNA_DeNovoProtocolAP
)
__instance_size__
(in
ResidueIndexSelectorCreatorAP
)
_RESULTS
(in
rosetta.core.scoring.sc._core_scoring_sc_
)
__init__()
(in
RNA_DeNovoProtocolCAP
)
__instance_size__
(in
ResidueIndexSelectorCreatorCAP
)
_RESULTSAP
(in
rosetta.core.scoring.sc._core_scoring_sc_
)
__init__()
(in
RNA_FragmentMover
)
__instance_size__
(in
ResidueNameSelectorAP
)
_RESULTSCAP
(in
rosetta.core.scoring.sc._core_scoring_sc_
)
__init__()
(in
RNA_FragmentMoverAP
)
__instance_size__
(in
ResidueNameSelectorCAP
)
_RNA_MatchType_
(in
rosetta.protocols.farna._protocols_farna_
)
__init__()
(in
RNA_FragmentMoverCAP
)
__instance_size__
(in
ResidueNameSelectorCreatorAP
)
_ROSETTA_DATABASE_PATH_
(in
rosetta
)
__init__()
(in
RNA_Fragments
)
__instance_size__
(in
ResidueNameSelectorCreatorCAP
)
_scale_list()
(in
PyMOLMover
)
__init__()
(in
RNA_FragmentsAP
)
__instance_size__
(in
ResidueSelector
)
_ScoreTypesRegistryByType_
(in
rosetta
)
__init__()
(in
RNA_FragmentsCAP
)
__instance_size__
(in
ResidueSelectorAP
)
_send_any()
(in
PyMOLMover
)
__init__()
(in
RNA_JumpLibrary
)
__instance_size__
(in
ResidueSelectorCAP
)
_send_raw_energies()
(in
PyMOLMover
)
__init__()
(in
RNA_JumpLibraryAP
)
__instance_size__
(in
ResidueSelectorCreator
)
_send_raw_message()
(in
PySocketClient
)
__init__()
(in
RNA_JumpLibraryCAP
)
__instance_size__
(in
ResidueSelectorCreatorAP
)
_static_type_name()
(in
BBTorsionAndAnglesSRFD
)
__init__()
(in
RNA_LoopCloser
)
__instance_size__
(in
ResidueSelectorCreatorCAP
)
_static_type_name()
(in
BBTorsionSRFD
)
__init__()
(in
RNA_LoopCloserAP
)
__instance_size__
(in
ResidueSelectorFactoryAP
)
_static_type_name()
(in
DownJumpSRFD
)
__init__()
(in
RNA_LoopCloserCAP
)
__instance_size__
(in
ResidueSelectorFactoryCAP
)
_static_type_name()
(in
Frame
)
__init__()
(in
RNA_Minimizer
)
__instance_size__
(in
SecondaryStructureSelectorAP
)
_static_type_name()
(in
JumpingFrame
)
__init__()
(in
RNA_MinimizerAP
)
__instance_size__
(in
SecondaryStructureSelectorCAP
)
_static_type_name()
(in
SecstructSRFD
)
__init__()
(in
RNA_MinimizerCAP
)
__instance_size__
(in
SecondaryStructureSelectorCreatorAP
)
_static_type_name()
(in
SingleResidueFragData
)
__init__()
(in
RNA_Pairing
)
__instance_size__
(in
SecondaryStructureSelectorCreatorCAP
)
_static_type_name()
(in
UpJumpSRFD
)
__init__()
(in
RNA_PairingAP
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
_static_type_name()
(in
DensityScoringClaimer
)
__init__()
(in
RNA_PairingCAP
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
_static_type_name()
(in
FoldandDockClaimer
)
__init__()
(in
RNA_PairingTemplate
)
__instance_size__
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
_static_type_name()
(in
MembraneTopologyClaimer
)
__init__()
(in
RNA_PairingTemplateAP
)
__instance_size__
(in
TrueResidueSelectorAP
)
_static_type_name()
(in
SymmetryClaimer
)
__init__()
(in
RNA_PairingTemplateCAP
)
__instance_size__
(in
TrueResidueSelectorCAP
)
_utility_
(in
rosetta.utility
)
__init__()
(in
RNA_Relaxer
)
__instance_size__
(in
TrueResidueSelectorCreatorAP
)
_utility_boinc_
(in
rosetta.utility.boinc
)
__init__()
(in
RNA_RelaxerAP
)
__instance_size__
(in
TrueResidueSelectorCreatorCAP
)
_utility_excn_
(in
rosetta.utility.excn
)
__init__()
(in
RNA_RelaxerCAP
)
__instance_size__
(in
RNA_ResidueLevelTask
)
_utility_factory_
(in
rosetta.utility.factory
)
__init__()
(in
RNA_SecStructInfo
)
__instance_size__
(in
RNA_ResidueLevelTaskAP
)
_utility_file_
(in
rosetta.utility.file
)
__init__()
(in
RNA_SecStructInfoAP
)
__instance_size__
(in
RNA_ResidueLevelTaskCAP
)
_utility_graph_
(in
rosetta.utility.graph
)
__init__()
(in
RNA_SecStructInfoCAP
)
__instance_size__
(in
CrystInfo
)
_utility_io_
(in
rosetta.utility.io
)
__init__()
(in
RNA_StructureParameters
)
__instance_size__
(in
CrystInfoAP
)
_utility_json_spirit_
(in
rosetta.utility.json_spirit
)
__init__()
(in
RNA_StructureParametersAP
)
__instance_size__
(in
CrystInfoCAP
)
_utility_keys_
(in
rosetta.utility.keys
)
__init__()
(in
RNA_StructureParametersCAP
)
__instance_size__
(in
MiniPose
)
_utility_libsvm_
(in
rosetta.utility.libsvm
)
__init__()
(in
TorsionSet
)
__instance_size__
(in
MiniPoseAP
)
_utility_lua_
(in
rosetta.utility.lua
)
__init__()
(in
TorsionSetAP
)
__instance_size__
(in
MiniPoseCAP
)
_utility_options_
(in
rosetta.utility.options
)
__init__()
(in
TorsionSetCAP
)
__instance_size__
(in
PDBInfo
)
_utility_options_keys_
(in
rosetta.utility.options.keys
)
__init__()
(in
__CPP_FullAtomRNA_Fragments__
)
__instance_size__
(in
PDBInfoAP
)
_utility_pointer_
(in
rosetta.utility.pointer
)
__init__()
(in
__CPP_MultipleDomainMover__
)
__instance_size__
(in
PDBInfoCAP
)
_utility_pointer_boost_
(in
rosetta.utility.pointer.boost
)
__init__()
(in
__CPP_RNA_DeNovoProtocol__
)
__instance_size__
(in
PDBPoseMap
)
_utility_pointer_std_
(in
rosetta.utility.pointer.std
)
__init__()
(in
__CPP_RNA_FragmentMover__
)
__instance_size__
(in
PDBPoseMapAP
)
_utility_py_
(in
rosetta.utility.py
)
__init__()
(in
__CPP_RNA_Fragments__
)
__instance_size__
(in
PDBPoseMapCAP
)
_utility_query_
(in
rosetta.utility.query
)
__init__()
(in
__CPP_RNA_LoopCloser__
)
__instance_size__
(in
Pose
)
_utility_signals_
(in
rosetta.utility.signals
)
__init__()
(in
__CPP_RNA_Minimizer__
)
__instance_size__
(in
PoseAP
)
_utility_sql_database_
(in
rosetta.utility.sql_database
)
__init__()
(in
__CPP_RNA_Relaxer__
)
__instance_size__
(in
PoseCAP
)
_utility_tag_
(in
rosetta.utility.tag
)
__init__()
(in
__CPP_RNA_SecStructInfo__
)
__instance_size__
(in
PosePyObserver
)
_utility_thread_
(in
rosetta.utility.thread
)
__init__()
(in
AtomAtomPairFeatures
)
__instance_size__
(in
Py_basic_datacache_DataCache_CacheableObserver
)
_utility_tools_
(in
rosetta.utility.tools
)
__init__()
(in
AtomAtomPairFeaturesAP
)
__instance_size__
(in
RemarkInfo
)
_write_silent_struct()
(in
SilentFileData
)
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