Module _core_chemical_rna_

add_values_from_center( (vector1_Real)torsions, (float)center, (float)max_range, (float)bin_size) -> None :
    core/chemical/rna/RNA_SamplerUtil.hh:28

    C++ signature :
        void add_values_from_center(utility::vector1<double, std::allocator<double> > {lvalue},double,double,double)

chi1_torsion_atom( (Residue)rsd) -> str :
    core/chemical/rna/util.hh:70

    C++ signature :
        std::string chi1_torsion_atom(core::conformation::Residue)

chi1_torsion_atom_index( (Residue)rsd) -> int :
    core/chemical/rna/util.hh:71

    C++ signature :
        unsigned long chi1_torsion_atom_index(core::conformation::Residue)

convert_acgu_to_1234( (str)c) -> int :
    ////////////////////////////////////////////////////////////////////////////
    

    C++ signature :
        unsigned long convert_acgu_to_1234(char)

default_jump_atom( (Residue)rsd) -> str :
    core/chemical/rna/util.hh:73

    C++ signature :
        std::string default_jump_atom(core::conformation::Residue)

first_base_atom( (Residue)rsd) -> str :
    ////////////////////////////////////////////////////////////////////////////
    

    C++ signature :
        std::string first_base_atom(core::conformation::Residue)

first_base_atom_index( (Residue)rsd) -> int :
    core/chemical/rna/util.hh:68

    C++ signature :
        unsigned long first_base_atom_index(core::conformation::Residue)

get_WC_atom( (AA)res_type) -> str :
    core/chemical/rna/util.hh:82

    C++ signature :
        std::string get_WC_atom(core::chemical::AA)

get_edge_from_num( (int)num) -> str :
    core/chemical/rna/util.hh:55

    C++ signature :
        char get_edge_from_num(unsigned long)

get_epsilon_torsions( (bool)north_pucker [, (bool)extra_epsilon=True [, (float)bin_size=20.0]]) -> vector1_Real :
    core/chemical/rna/RNA_SamplerUtil.hh:41

    C++ signature :
        utility::vector1<double, std::allocator<double> > get_epsilon_torsions(bool [,bool=True [,double=20.0]])

get_epsilon_torsions( (float)delta, (bool)extra_epsilon, (float)bin_size) -> vector1_Real :
    core/chemical/rna/RNA_SamplerUtil.hh:36

    C++ signature :
        utility::vector1<double, std::allocator<double> > get_epsilon_torsions(double,bool,double)

get_full_LW_orientation_from_num( (int)num) -> str :
    core/chemical/rna/util.hh:63

    C++ signature :
        std::string get_full_LW_orientation_from_num(unsigned long)

get_full_edge_from_num( (int)num) -> str :
    core/chemical/rna/util.hh:57

    C++ signature :
        std::string get_full_edge_from_num(unsigned long)

get_full_orientation_from_num( (int)num) -> str :
    core/chemical/rna/util.hh:61

    C++ signature :
        std::string get_full_orientation_from_num(unsigned long)

get_full_torsions([  (float)bin_size=20.0]) -> vector1_Real :
    core/chemical/rna/RNA_SamplerUtil.hh:31

    C++ signature :
        utility::vector1<double, std::allocator<double> > get_full_torsions([ double=20.0])

get_orientation_from_num( (int)num) -> str :
    core/chemical/rna/util.hh:59

    C++ signature :
        char get_orientation_from_num(unsigned long)

get_residue_base_state( (Residue)rsd) -> ChiState :
    core/chemical/rna/util.hh:109

    C++ signature :
        core::chemical::rna::ChiState get_residue_base_state(core::conformation::Residue)

get_residue_pucker_state( (Residue)rsd) -> PuckerState :
    core/chemical/rna/util.hh:112

    C++ signature :
        core::chemical::rna::PuckerState get_residue_pucker_state(core::conformation::Residue)

get_rna_base_centroid( (Residue)rsd [, (bool)verbose=False]) -> xyzVector_Real :
    core/chemical/rna/util.hh:100

    C++ signature :
        numeric::xyzVector<double> get_rna_base_centroid(core::conformation::Residue [,bool=False])

get_rna_base_coordinate_system( (Residue)rsd, (xyzVector_Real)centroid) -> xyzMatrix_Real :
    core/chemical/rna/util.hh:103

    C++ signature :
        numeric::xyzMatrix<double> get_rna_base_coordinate_system(core::conformation::Residue,numeric::xyzVector<double>)

get_watson_crick_base_pair_atoms( (Residue)rsd_type1, (Residue)rsd_type2, (vector1_string)atom_ids1, (vector1_string)atom_ids2) -> None :
    core/chemical/rna/util.hh:96

    C++ signature :
        void get_watson_crick_base_pair_atoms(core::conformation::Residue,core::conformation::Residue,utility::vector1<std::string, std::allocator<std::string> > {lvalue},utility::vector1<std::string, std::allocator<std::string> > {lvalue})

get_watson_crick_base_pair_atoms( (Residue)rsd_type1, (Residue)rsd_type2, (str)atom1, (str)atom2) -> None :
    core/chemical/rna/util.hh:89

    C++ signature :
        void get_watson_crick_base_pair_atoms(core::conformation::Residue,core::conformation::Residue,std::string {lvalue},std::string {lvalue})

is_base_phosphate_atom_pair( (Residue)rsd_1, (Residue)rsd_2, (int)atomno_1, (int)atomno_2) -> bool :
    core/chemical/rna/util.hh:106

    C++ signature :
        bool is_base_phosphate_atom_pair(core::conformation::Residue,core::conformation::Residue,unsigned long,unsigned long)

is_purine( (Residue)rsd) -> bool :
    core/chemical/rna/util.hh:67

    C++ signature :
        bool is_purine(core::conformation::Residue)

possibly_canonical( (AA)aa1, (AA)aa2) -> bool :
    core/chemical/rna/util.hh:76

    C++ signature :
        bool possibly_canonical(core::chemical::AA,core::chemical::AA)

possibly_canonical_strict( (AA)aa1, (AA)aa2) -> bool :
    core/chemical/rna/util.hh:79

    C++ signature :
        bool possibly_canonical_strict(core::chemical::AA,core::chemical::AA)

ALPHA

Value:

rosetta.core.chemical.rna._core_chemical_rna_.RNA_Torsion.ALPHA

ANTI

Value:

rosetta.core.chemical.rna._core_chemical_rna_.ChiState.ANTI

ANY_BASE_EDGE

Value:

rosetta.core.chemical.rna._core_chemical_rna_.BaseEdge.ANY_BASE_EDGE

ANY_CHI

Value:

rosetta.core.chemical.rna._core_chemical_rna_.ChiState.ANY_CHI

ANY_PUCKER

Value:

rosetta.core.chemical.rna._core_chemical_rna_.PuckerState.ANY_PUCKER

ANY_TORSION

Value:

rosetta.core.chemical.rna._core_chemical_rna_.RNA_Torsion.ANY_TORSION

BETA

Value:

rosetta.core.chemical.rna._core_chemical_rna_.RNA_Torsion.BETA

CHI

Value:

rosetta.core.chemical.rna._core_chemical_rna_.RNA_Torsion.CHI

DELTA

Value:

rosetta.core.chemical.rna._core_chemical_rna_.RNA_Torsion.DELTA

EPSILON

Value:

rosetta.core.chemical.rna._core_chemical_rna_.RNA_Torsion.EPSILON

GAMMA

Value:

rosetta.core.chemical.rna._core_chemical_rna_.RNA_Torsion.GAMMA

HOOGSTEEN

Value:

rosetta.core.chemical.rna._core_chemical_rna_.BaseEdge.HOOGSTEEN

NORTH

Value:

rosetta.core.chemical.rna._core_chemical_rna_.PuckerState.NORTH

NO_CHI

Value:

rosetta.core.chemical.rna._core_chemical_rna_.ChiState.NO_CHI

NO_PUCKER

Value:

rosetta.core.chemical.rna._core_chemical_rna_.PuckerState.NO_PUCKER

NU1

Value:

rosetta.core.chemical.rna._core_chemical_rna_.RNA_Torsion.NU1

NU2

Value:

rosetta.core.chemical.rna._core_chemical_rna_.RNA_Torsion.NU2

O2H

Value:

rosetta.core.chemical.rna._core_chemical_rna_.RNA_Torsion.O2H

O2PRIME

Value:

rosetta.core.chemical.rna._core_chemical_rna_.BaseEdge.O2PRIME

PHOSPHATE

Value:

rosetta.core.chemical.rna._core_chemical_rna_.BaseEdge.PHOSPHATE

SOUTH

Value:

rosetta.core.chemical.rna._core_chemical_rna_.PuckerState.SOUTH

SUGAR

Value:

rosetta.core.chemical.rna._core_chemical_rna_.BaseEdge.SUGAR

WATSON_CRICK

Value:

rosetta.core.chemical.rna._core_chemical_rna_.BaseEdge.WATSON_CRICK

ZETA

Value:

rosetta.core.chemical.rna._core_chemical_rna_.RNA_Torsion.ZETA