Module _protocols_features_strand_assembly_

Run_WriteToDB_sandwich( (str)tag, (Pose)dssp_pose, (object)bs_of_sw_can_by_sh, (int)max_num_sw_per_pdb_, (long)struct_id, (object)db_session, (float)min_CA_CA_dis_, (float)max_CA_CA_dis_, (int)sandwich_PK_id_counter) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:307

    C++ signature :
        unsigned long Run_WriteToDB_sandwich(std::string,core::pose::Pose {lvalue},utility::vector1<protocols::features::strand_assembly::SandwichFragment, std::allocator<protocols::features::strand_assembly::SandwichFragment> >,unsigned long,unsigned long long,boost::shared_ptr<utility::sql_database::session>,double,double,unsigned long)

WriteToDB_AA_to_terminal_loops( (long)struct_id, (object)db_session, (Pose)dssp_pose, (int)sandwich_PK_id_counter, (int)sw_can_by_sh_id, (str)tag, (bool)starting_loop, (int)residue_begin, (int)residue_end) -> None :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:67

    C++ signature :
        void WriteToDB_AA_to_terminal_loops(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose {lvalue},unsigned long,unsigned long,std::string,bool,unsigned long,unsigned long)

WriteToDB_avg_b_factor_CB_at_each_component( (long)struct_id, (object)db_session, (Pose)pose, (int)sw_can_by_sh_id) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:91

    C++ signature :
        unsigned long WriteToDB_avg_b_factor_CB_at_each_component(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose,unsigned long)

WriteToDB_dihedral_angle_between_core_strands_across_facing_sheets( (long)struct_id, (object)db_session, (Pose)pose, (int)sw_can_by_sh_id) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:98

    C++ signature :
        unsigned long WriteToDB_dihedral_angle_between_core_strands_across_facing_sheets(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose,unsigned long)

WriteToDB_dssp_ratio_in_sw( (long)struct_id, (object)db_session, (Pose)dssp_pose, (int)sw_can_by_sh_id) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:105

    C++ signature :
        unsigned long WriteToDB_dssp_ratio_in_sw(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose {lvalue},unsigned long)

WriteToDB_ending_loop( (long)struct_id, (object)db_session, (Pose)dssp_pose, (int)sandwich_PK_id_counter, (int)sw_can_by_sh_id, (str)tag, (int)max_starting_loop_size_) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:78

    C++ signature :
        unsigned long WriteToDB_ending_loop(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose {lvalue},unsigned long,unsigned long,std::string,unsigned long)

WriteToDB_hydrophobic_ratio_net_charge( (long)struct_id, (object)db_session, (int)sw_can_by_sh_id) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:111

    C++ signature :
        unsigned long WriteToDB_hydrophobic_ratio_net_charge(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

WriteToDB_long_strand_id_in_each_sw( (long)struct_id, (object)db_session, (int)sw_can_by_sh_id) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:84

    C++ signature :
        unsigned long WriteToDB_long_strand_id_in_each_sw(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

WriteToDB_min_avg_dis_between_sheets_by_cen_res( (long)struct_id, (object)db_session, (int)sw_can_by_sh_id, (Pose)dssp_pose, (vector1_Size)all_distinct_sheet_ids, (int)min_num_strands_in_sheet_) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:121

    C++ signature :
        unsigned long WriteToDB_min_avg_dis_between_sheets_by_cen_res(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long,core::pose::Pose {lvalue},utility::vector1<unsigned long, std::allocator<unsigned long> >,unsigned long)

WriteToDB_min_dis_between_sheets_by_all_res( (long)struct_id, (object)db_session, (int)sw_can_by_sh_id, (Pose)dssp_pose, (vector1_Size)all_distinct_sheet_ids) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:130

    C++ signature :
        unsigned long WriteToDB_min_dis_between_sheets_by_all_res(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long,core::pose::Pose {lvalue},utility::vector1<unsigned long, std::allocator<unsigned long> >)

WriteToDB_number_of_AAs_in_a_pair_of_edge_strands( (long)struct_id, (object)db_session, (Pose)pose, (object)bs_of_sw_can_by_sh, (int)max_num_sw_per_pdb_, (float)min_CA_CA_dis_, (float)max_CA_CA_dis_) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:140

    C++ signature :
        unsigned long WriteToDB_number_of_AAs_in_a_pair_of_edge_strands(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose,utility::vector1<protocols::features::strand_assembly::SandwichFragment, std::allocator<protocols::features::strand_assembly::SandwichFragment> >,unsigned long,double,double)

WriteToDB_number_of_core_heading_FWY_in_sw( (long)struct_id, (object)db_session, (int)sw_can_by_sh_id) -> None :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:158

    C++ signature :
        void WriteToDB_number_of_core_heading_FWY_in_sw(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

WriteToDB_number_of_core_heading_LWY_in_core_strands_in_sw( (long)struct_id, (object)db_session, (int)sw_can_by_sh_id) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:152

    C++ signature :
        unsigned long WriteToDB_number_of_core_heading_LWY_in_core_strands_in_sw(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

WriteToDB_number_of_core_heading_W_in_sw( (long)struct_id, (object)db_session, (int)sw_can_by_sh_id) -> None :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:146

    C++ signature :
        void WriteToDB_number_of_core_heading_W_in_sw(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

WriteToDB_number_of_core_heading_aro_AAs_in_a_pair_of_edge_strands( (long)struct_id, (object)db_session, (int)sw_can_by_sh_id, (int)current_bs_id, (int)closest_bs_id) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:167

    C++ signature :
        unsigned long WriteToDB_number_of_core_heading_aro_AAs_in_a_pair_of_edge_strands(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long,unsigned long,unsigned long)

WriteToDB_number_of_core_heading_charged_AAs_in_a_pair_of_edge_strands( (long)struct_id, (object)db_session, (int)sw_can_by_sh_id, (int)current_bs_id, (int)closest_bs_id) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:175

    C++ signature :
        unsigned long WriteToDB_number_of_core_heading_charged_AAs_in_a_pair_of_edge_strands(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long,unsigned long,unsigned long)

WriteToDB_number_of_edge_strands_in_each_sw( (long)struct_id, (object)db_session, (int)sw_can_by_sh_id) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:181

    C++ signature :
        unsigned long WriteToDB_number_of_edge_strands_in_each_sw(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

WriteToDB_number_of_sheets_that_surround_this_sheet( (long)struct_id, (object)db_session, (int)sheet_id, (int)num_of_sheets_that_surround_this_sheet) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:188

    C++ signature :
        unsigned long WriteToDB_number_of_sheets_that_surround_this_sheet(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long,unsigned long)

WriteToDB_number_strands_in_each_sw( (long)struct_id, (object)db_session, (int)sw_can_by_sh_id) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:194

    C++ signature :
        unsigned long WriteToDB_number_strands_in_each_sw(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

WriteToDB_prolines_that_seem_to_prevent_aggregation( (long)struct_id, (object)db_session, (int)sw_can_by_sh_id, (float)wt_for_pro_in_starting_loop_, (float)wt_for_pro_in_1st_inter_sheet_loop_, (float)wt_for_pro_in_3rd_inter_sheet_loop_) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:203

    C++ signature :
        unsigned long WriteToDB_prolines_that_seem_to_prevent_aggregation(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long,double,double,double)

WriteToDB_ratio_of_core_heading_FWY_in_sw( (long)struct_id, (object)db_session, (int)sw_can_by_sh_id, (Pose)pose) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:210

    C++ signature :
        unsigned long WriteToDB_ratio_of_core_heading_FWY_in_sw(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long,core::pose::Pose)

WriteToDB_rkde( (long)struct_id, (object)db_session, (int)rkde_PK_id_counter, (str)tag, (int)residue_number, (str)residue_type) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:219

    C++ signature :
        unsigned long WriteToDB_rkde(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long,std::string,unsigned long,std::string)

WriteToDB_rkde_in_strands( (long)struct_id, (object)db_session, (int)rkde_in_strands_PK_id_counter, (str)tag, (int)sw_can_by_sh_id, (int)residue_number, (str)residue_type, (str)heading_direction) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:230

    C++ signature :
        unsigned long WriteToDB_rkde_in_strands(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long,std::string,unsigned long,unsigned long,std::string,std::string)

WriteToDB_sandwich( (long)struct_id, (object)db_session, (Pose)pose, (int)sandwich_PK_id_counter, (str)tag, (int)sw_can_by_sh_id, (int)sheet_id, (str)sheet_antiparellel, (int)sandwich_bs_id, (str)strand_is_at_edge, (int)component_size, (int)residue_begin, (int)residue_end) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:324

    C++ signature :
        unsigned long WriteToDB_sandwich(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose,unsigned long,std::string,unsigned long,unsigned long,std::string,unsigned long,std::string,unsigned long,unsigned long,unsigned long)

WriteToDB_sandwich_by_AA_w_direction( (long)struct_id, (object)db_session, (Pose)pose, (Pose)pose_w_center_000, (int)sw_can_by_sh_id, (int)sheet_id, (int)residue_begin, (int)residue_end) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:336

    C++ signature :
        unsigned long WriteToDB_sandwich_by_AA_w_direction(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose,core::pose::Pose,unsigned long,unsigned long,unsigned long,unsigned long)

WriteToDB_sheet( (long)struct_id, (object)db_session, (int)sheet_PK_id_counter, (int)sheet_id, (int)segment_id) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:238

    C++ signature :
        unsigned long WriteToDB_sheet(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long,unsigned long,unsigned long)

WriteToDB_sheet_antiparallel( (long)struct_id, (object)db_session, (int)sheet_id, (str)antiparallel) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:245

    C++ signature :
        unsigned long WriteToDB_sheet_antiparallel(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long,std::string)

WriteToDB_sheet_connectivity( (long)struct_id, (object)db_session, (Pose)pose, (int)sandwich_PK_id_counter, (str)tag, (int)sw_can_by_sh_id, (str)loop_kind, (int)intra_sheet_con_id, (int)inter_sheet_con_id, (str)LR, (str)cano_LR, (str)PA_by_preceding_E, (str)PA_by_following_E, (str)cano_PA, (str)heading_direction, (str)heading_parallel, (str)cano_parallel_EE, (int)loop_size, (int)start_res, (int)end_res) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:269

    C++ signature :
        unsigned long WriteToDB_sheet_connectivity(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose,unsigned long,std::string,unsigned long,std::string,unsigned long,unsigned long,std::string,std::string,std::string,std::string,std::string,std::string,std::string,std::string,unsigned long,unsigned long,unsigned long)

WriteToDB_sheet_id( (long)struct_id, (object)db_session, (int)new_sheet_id, (int)old_sheet_id) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:276

    C++ signature :
        unsigned long WriteToDB_sheet_id(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long,unsigned long)

WriteToDB_shortest_dis_between_facing_aro_in_sw( (long)struct_id, (object)db_session, (int)sw_can_by_sh_id, (Pose)pose, (vector1_Size)all_distinct_sheet_ids, (int)min_num_strands_in_sheet_) -> float :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:285

    C++ signature :
        double WriteToDB_shortest_dis_between_facing_aro_in_sw(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long,core::pose::Pose,utility::vector1<unsigned long, std::allocator<unsigned long> >,unsigned long)

WriteToDB_starting_loop( (long)struct_id, (object)db_session, (Pose)dssp_pose, (int)sandwich_PK_id_counter, (int)sw_can_by_sh_id, (str)tag, (int)max_starting_loop_size_) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:295

    C++ signature :
        unsigned long WriteToDB_starting_loop(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose {lvalue},unsigned long,unsigned long,std::string,unsigned long)

WriteToDB_sw_can_by_sh( (long)struct_id, (object)db_session, (int)sw_can_by_sh_PK_id_counter, (str)tag, (int)sw_can_by_sh_id_counter, (int)sheet_id, (int)num_strands_from_sheet) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:346

    C++ signature :
        unsigned long WriteToDB_sw_can_by_sh(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long,std::string,unsigned long,unsigned long,unsigned long)

WriteToDB_sw_res_size( (long)struct_id, (object)db_session, (int)sw_can_by_sh_id) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:352

    C++ signature :
        unsigned long WriteToDB_sw_res_size(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

WriteToDB_topology_candidate( (long)struct_id, (object)db_session, (int)sw_can_by_sh_id) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:359

    C++ signature :
        unsigned long WriteToDB_topology_candidate(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

WriteToDB_turn_AA( (Pose)pose, (int)sw_can_by_sh_id, (int)i, (long)struct_id, (object)db_session, (str)turn_type) -> None :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:368

    C++ signature :
        void WriteToDB_turn_AA(core::pose::Pose,unsigned long,unsigned long,unsigned long long,boost::shared_ptr<utility::sql_database::session>,std::string)

WriteToDB_turn_type( (Pose)pose, (int)sw_can_by_sh_id, (int)start_res, (int)end_res, (long)struct_id, (object)db_session, (float)allowed_deviation_for_turn_type_id_) -> str :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:379

    C++ signature :
        std::string WriteToDB_turn_type(core::pose::Pose,unsigned long,unsigned long,unsigned long,unsigned long long,boost::shared_ptr<utility::sql_database::session>,double)

WriteToDB_whether_sw_is_not_connected_with_continuous_atoms( (long)struct_id, (object)db_session, (int)sw_can_by_sh_id, (str)sw_is_not_connected_with_continuous_atoms) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:386

    C++ signature :
        unsigned long WriteToDB_whether_sw_is_not_connected_with_continuous_atoms(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long,std::string)

absolute_vec( (xyzVector_Real)vector) -> float :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:30

    C++ signature :
        double absolute_vec(numeric::xyzVector<double>)

cal_dis_angle_to_find_sheet( (Pose)pose, (int)res_i_0, (int)res_i_1, (int)res_i_2, (int)res_j_0, (int)res_j_1, (int)res_j_2) -> std_vector_Real :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:48

    C++ signature :
        std::vector<double, std::allocator<double> > cal_dis_angle_to_find_sheet(core::pose::Pose,unsigned long,unsigned long,unsigned long,unsigned long,unsigned long,unsigned long)

cal_min_avg_dis_between_sheets_by_cen_res( (long)struct_id, (object)db_session, (Pose)dssp_pose, (vector1_Size)all_distinct_sheet_ids, (int)min_num_strands_in_sheet_) -> pair_Real_Real :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:56

    C++ signature :
        std::pair<double, double> cal_min_avg_dis_between_sheets_by_cen_res(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose {lvalue},utility::vector1<unsigned long, std::allocator<unsigned long> >,unsigned long)

cal_min_avg_dis_between_two_sheets_by_cen_res( (long)struct_id, (object)db_session, (Pose)dssp_pose, (int)sheet_id_1, (int)sheet_id_2) -> object :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:65

    C++ signature :
        std::pair<float, float> cal_min_avg_dis_between_two_sheets_by_cen_res(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose {lvalue},unsigned long,unsigned long)

cal_min_dis_between_sheets_by_all_res( (long)struct_id, (object)db_session, (Pose)dssp_pose, (vector1_Size)all_distinct_sheet_ids) -> float :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:73

    C++ signature :
        float cal_min_dis_between_sheets_by_all_res(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose {lvalue},utility::vector1<unsigned long, std::allocator<unsigned long> >)

cal_min_dis_between_two_sheets_by_all_res( (long)struct_id, (object)db_session, (Pose)dssp_pose, (int)sheet_id_1, (int)sheet_id_2) -> float :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:82

    C++ signature :
        float cal_min_dis_between_two_sheets_by_all_res(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose {lvalue},unsigned long,unsigned long)

cal_num_of_sheets_that_surround_this_sheet( (long)struct_id, (object)db_session, (Pose)dssp_pose, (vector1_Size)all_distinct_sheet_ids, (int)sheet_id, (int)min_num_strands_in_sheet_, (float)inter_sheet_distance_to_see_whether_a_sheet_is_surrounded_by_other_sheets_) -> int :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:92

    C++ signature :
        unsigned long cal_num_of_sheets_that_surround_this_sheet(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose {lvalue},utility::vector1<unsigned long, std::allocator<unsigned long> >,unsigned long,unsigned long,double)

cal_shortest_dis_between_facing_aro_in_sw( (long)struct_id, (object)db_session, (Pose)pose, (vector1_Size)all_distinct_sheet_ids, (int)min_num_strands_in_sheet_) -> float :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:100

    C++ signature :
        float cal_shortest_dis_between_facing_aro_in_sw(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose,utility::vector1<unsigned long, std::allocator<unsigned long> >,unsigned long)

calculate_dihedral_w_4_resnums( (Pose)pose, (int)res1_sheet_i, (int)res2_sheet_i, (int)res1_sheet_j, (int)res2_sheet_j) -> float :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:38

    C++ signature :
        double calculate_dihedral_w_4_resnums(core::pose::Pose,unsigned long,unsigned long,unsigned long,unsigned long)

change_sheet_id_if_possible( (long)struct_id, (object)db_session, (Pose)pose, (float)min_CA_CA_dis_, (float)max_CA_CA_dis_, (float)min_C_O_N_angle_) -> bool :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:38

    C++ signature :
        bool change_sheet_id_if_possible(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose,double,double,double)

check_LR( (Pose)dssp_pose, (int)preceding_E, (int)following_E) -> str :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:138

    C++ signature :
        std::string check_LR(core::pose::Pose {lvalue},unsigned long,unsigned long)

check_PA( (Pose)dssp_pose, (int)residue_begin, (int)residue_end) -> pair_string_string :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:144

    C++ signature :
        std::pair<std::string, std::string> check_PA(core::pose::Pose {lvalue},unsigned long,unsigned long)

check_canonicalness_of_LR( (int)loop_size, (bool)intra_sheet, (str)LR) -> str :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:107

    C++ signature :
        std::string check_canonicalness_of_LR(unsigned long,bool,std::string)

check_canonicalness_of_PA( (int)loop_size, (bool)intra_sheet, (str)PA_by_preceding_E, (str)PA_by_following_E, (float)check_canonicalness_cutoff_) -> str :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:115

    C++ signature :
        std::string check_canonicalness_of_PA(unsigned long,bool,std::string,std::string,double)

check_canonicalness_of_parallel_EE( (int)loop_size, (bool)intra_sheet, (str)parallel_EE) -> str :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:121

    C++ signature :
        std::string check_canonicalness_of_parallel_EE(unsigned long,bool,std::string)

check_heading_direction( (Pose)dssp_pose, (int)preceding_E, (int)following_E, (str)check_heading_direction_by_) -> str :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:128

    C++ signature :
        std::string check_heading_direction(core::pose::Pose {lvalue},unsigned long,unsigned long,std::string)

check_helix_existence( (Pose)pose) -> bool :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:132

    C++ signature :
        bool check_helix_existence(core::pose::Pose)

check_strand_too_closeness( (Pose)pose, (SandwichFragment)strand_i, (SandwichFragment)strand_j, (float)min_inter_sheet_dis_CA_CA_) -> bool :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:151

    C++ signature :
        bool check_strand_too_closeness(core::pose::Pose,protocols::features::strand_assembly::SandwichFragment,protocols::features::strand_assembly::SandwichFragment,double)

check_sw_by_dis( (Pose)pose, (SandwichFragment)strand_i, (SandwichFragment)strand_j, (bool)antiparalell, (float)min_sheet_dis_, (float)max_sheet_dis_) -> float :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:161

    C++ signature :
        double check_sw_by_dis(core::pose::Pose,protocols::features::strand_assembly::SandwichFragment,protocols::features::strand_assembly::SandwichFragment,bool,double,double)

check_whether_hairpin_connects_short_strand( (long)struct_id, (object)db_session, (int)start_res, (int)next_start_res) -> bool :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:168

    C++ signature :
        bool check_whether_hairpin_connects_short_strand(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long,unsigned long)

check_whether_same_direction_strands_connect_two_sheets_or_a_loop( (long)struct_id, (object)db_session, (Pose)pose, (int)start_res, (int)next_start_res) -> bool :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:177

    C++ signature :
        bool check_whether_same_direction_strands_connect_two_sheets_or_a_loop(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose,unsigned long,unsigned long)

check_whether_sheets_are_connected_with_near_bb_atoms( (long)struct_id, (object)db_session, (Pose)dssp_pose, (int)sw_can_by_sh_id, (float)min_N_O_dis_between_two_sheets_, (float)min_N_H_O_angle_between_two_sheets_) -> bool :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:210

    C++ signature :
        bool check_whether_sheets_are_connected_with_near_bb_atoms(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose {lvalue},unsigned long,double,double)

check_whether_strand_i_is_in_sheet( (long)struct_id, (object)db_session, (int)segment_id) -> bool :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:216

    C++ signature :
        bool check_whether_strand_i_is_in_sheet(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

check_whether_sw_by_sh_id_still_alive( (long)struct_id, (object)db_session, (int)sw_can_by_sh_id) -> bool :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:183

    C++ signature :
        bool check_whether_sw_by_sh_id_still_alive(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

check_whether_sw_is_not_connected_with_continuous_atoms( (long)struct_id, (object)db_session, (Pose)dssp_pose, (int)sw_can_by_sh_id) -> str :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:190

    C++ signature :
        std::string check_whether_sw_is_not_connected_with_continuous_atoms(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose {lvalue},unsigned long)

check_whether_this_pdb_should_be_excluded( (str)tag) -> bool :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:194

    C++ signature :
        bool check_whether_this_pdb_should_be_excluded(std::string)

check_whether_this_sheet_is_too_short( (long)struct_id, (object)db_session, (int)sheet_i) -> bool :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:200

    C++ signature :
        bool check_whether_this_sheet_is_too_short(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

count_AA_w_direction( (long)struct_id, (object)db_session, (Pose)pose, (Pose)pose_w_center_000, (int)sw_can_by_sh_id, (int)sheet_id, (int)residue_begin, (int)residue_end) -> std_vector_Size :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:227

    C++ signature :
        std::vector<unsigned long, std::allocator<unsigned long> > count_AA_w_direction(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose,core::pose::Pose,unsigned long,unsigned long,unsigned long,unsigned long)

count_AA_wo_direction( (Pose)pose, (int)residue_begin, (int)residue_end) -> std_vector_Size :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:233

    C++ signature :
        std::vector<unsigned long, std::allocator<unsigned long> > count_AA_wo_direction(core::pose::Pose,unsigned long,unsigned long)

delete_this_struct_id( (long)struct_id, (object)db_session) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:43

    C++ signature :
        unsigned long delete_this_struct_id(unsigned long long,boost::shared_ptr<utility::sql_database::session>)

delete_this_sw_can_by_sh_id_from_sw_by_comp( (long)struct_id, (object)db_session, (int)sw_can_by_sh_id) -> int :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:50

    C++ signature :
        unsigned long delete_this_sw_can_by_sh_id_from_sw_by_comp(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

determine_core_heading_surface_heading_by_distance( (Pose)pose_w_center_000, (int)residue_num) -> str :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:238

    C++ signature :
        std::string determine_core_heading_surface_heading_by_distance(core::pose::Pose,unsigned long)

determine_heading_direction_by_vector( (long)struct_id, (object)db_session, (Pose)pose, (int)sw_can_by_sh_id, (int)sheet_id, (int)residue_begin, (int)residue_end, (int)ii) -> str :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:251

    C++ signature :
        std::string determine_heading_direction_by_vector(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose,unsigned long,unsigned long,unsigned long,unsigned long,unsigned long)

find_sheet( (Pose)pose, (SandwichFragment)strand_i, (SandwichFragment)strand_j, (bool)antiparalell, (float)min_CA_CA_dis_, (float)max_CA_CA_dis_, (float)min_C_O_N_angle_) -> int :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:262

    C++ signature :
        unsigned long find_sheet(core::pose::Pose,protocols::features::strand_assembly::SandwichFragment,protocols::features::strand_assembly::SandwichFragment,bool,double,double,double)

get_all_residues_in_this_sheet( (long)struct_id, (object)db_session, (int)sheet_id) -> std_vector_Size :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:268

    C++ signature :
        std::vector<unsigned long, std::allocator<unsigned long> > get_all_residues_in_this_sheet(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

get_all_strands_in_sheet_i( (long)struct_id, (object)db_session, (int)sheet_id) -> object :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:275

    C++ signature :
        utility::vector1<protocols::features::strand_assembly::SandwichFragment, std::allocator<protocols::features::strand_assembly::SandwichFragment> > get_all_strands_in_sheet_i(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

get_aro_residues_in_this_sheet( (long)struct_id, (object)db_session, (Pose)pose, (int)sheet_id) -> std_vector_Size :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:283

    C++ signature :
        std::vector<unsigned long, std::allocator<unsigned long> > get_aro_residues_in_this_sheet(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose,unsigned long)

get_avg_dis_CA_CA( (Pose)pose, (int)i_resnum, (int)i_resnum_1, (int)i_resnum_2, (int)i_resnum_3, (int)j_resnum, (int)j_resnum_1, (int)j_resnum_2, (int)j_resnum_3, (float)min_sheet_dis_, (float)max_sheet_dis_) -> float :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:297

    C++ signature :
        double get_avg_dis_CA_CA(core::pose::Pose,unsigned long,unsigned long,unsigned long,unsigned long,unsigned long,unsigned long,unsigned long,unsigned long,double,double)

get_avg_dis_strands( (Pose)pose, (SandwichFragment)strand_i, (SandwichFragment)strand_j) -> float :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:303

    C++ signature :
        double get_avg_dis_strands(core::pose::Pose,protocols::features::strand_assembly::SandwichFragment,protocols::features::strand_assembly::SandwichFragment)

get_central_residues_in_each_of_two_edge_strands( (long)struct_id, (object)db_session, (Pose)pose, (int)sheet_i, (float)min_CA_CA_dis_, (float)max_CA_CA_dis_) -> pair_int_int :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:326

    C++ signature :
        std::pair<int, int> get_central_residues_in_each_of_two_edge_strands(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose,unsigned long,double,double)

get_central_residues_in_other_sheet( (long)struct_id, (object)db_session, (int)sw_can_by_sh_id, (int)sheet_id) -> std_vector_Size :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:310

    C++ signature :
        std::vector<unsigned long, std::allocator<unsigned long> > get_central_residues_in_other_sheet(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long,unsigned long)

get_central_residues_in_this_sheet( (long)struct_id, (object)db_session, (int)sheet_id) -> std_vector_Size :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:317

    C++ signature :
        std::vector<unsigned long, std::allocator<unsigned long> > get_central_residues_in_this_sheet(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

get_chain_B_resNum( (long)struct_id, (object)db_session, (int)sw_can_by_sh_id) -> vector1_Size :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:332

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > get_chain_B_resNum(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

get_closest_distance_between_strands( (Pose)pose, (SandwichFragment)strand_i, (SandwichFragment)strand_j) -> float :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:339

    C++ signature :
        double get_closest_distance_between_strands(core::pose::Pose,protocols::features::strand_assembly::SandwichFragment,protocols::features::strand_assembly::SandwichFragment)

get_current_bs_id_and_closest_edge_bs_id_in_different_sheet( (long)struct_id, (object)db_session, (Pose)pose, (int)sw_can_by_sh_id, (int)sheet_id, (int)residue_begin, (int)residue_end) -> pair_Size_Size :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:350

    C++ signature :
        std::pair<unsigned long, unsigned long> get_current_bs_id_and_closest_edge_bs_id_in_different_sheet(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose,unsigned long,unsigned long,unsigned long,unsigned long)

get_current_strands_in_sheet( (long)struct_id, (object)db_session) -> object :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:355

    C++ signature :
        utility::vector1<protocols::features::strand_assembly::SandwichFragment, std::allocator<protocols::features::strand_assembly::SandwichFragment> > get_current_strands_in_sheet(unsigned long long,boost::shared_ptr<utility::sql_database::session>)

get_distinct_sheet_id_from_sheet_table( (long)struct_id, (object)db_session) -> vector1_Size :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:360

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > get_distinct_sheet_id_from_sheet_table(unsigned long long,boost::shared_ptr<utility::sql_database::session>)

get_distinct_sw_id_from_sandwich_table( (long)struct_id, (object)db_session) -> vector1_Size :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:365

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > get_distinct_sw_id_from_sandwich_table(unsigned long long,boost::shared_ptr<utility::sql_database::session>)

get_full_strands( (long)struct_id, (object)db_session) -> object :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:370

    C++ signature :
        utility::vector1<protocols::features::strand_assembly::SandwichFragment, std::allocator<protocols::features::strand_assembly::SandwichFragment> > get_full_strands(unsigned long long,boost::shared_ptr<utility::sql_database::session>)

get_full_strands_from_sheet( (long)struct_id, (object)db_session, (int)sheet_id) -> object :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:376

    C++ signature :
        utility::vector1<protocols::features::strand_assembly::SandwichFragment, std::allocator<protocols::features::strand_assembly::SandwichFragment> > get_full_strands_from_sheet(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

get_list_of_residues_in_sheet_i( (object)all_strands_in_sheet_i) -> vector1_Size :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:380

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > get_list_of_residues_in_sheet_i(utility::vector1<protocols::features::strand_assembly::SandwichFragment, std::allocator<protocols::features::strand_assembly::SandwichFragment> >)

get_max_sheet_id( (long)struct_id, (object)db_session) -> int :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:386

    C++ signature :
        unsigned long get_max_sheet_id(unsigned long long,boost::shared_ptr<utility::sql_database::session>)

get_next_starting_res_for_connecting_strands( (long)struct_id, (object)db_session, (int)sw_can_by_sh_id, (int)former_ending_res) -> pair_Size_Size :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:393

    C++ signature :
        std::pair<unsigned long, unsigned long> get_next_starting_res_for_connecting_strands(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long,unsigned long)

get_num_of_distinct_sheet_id( (long)struct_id, (object)db_session) -> int :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:398

    C++ signature :
        unsigned long get_num_of_distinct_sheet_id(unsigned long long,boost::shared_ptr<utility::sql_database::session>)

get_num_of_sheets_that_surround_this_sheet( (long)struct_id, (object)db_session, (int)sheet_id) -> int :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:404

    C++ signature :
        unsigned long get_num_of_sheets_that_surround_this_sheet(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

get_num_strands_in_this_sheet( (long)struct_id, (object)db_session, (int)sheet_id) -> int :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:410

    C++ signature :
        unsigned long get_num_strands_in_this_sheet(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

get_segment_id( (long)struct_id, (object)db_session, (int)all_strands_index) -> int :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:417

    C++ signature :
        unsigned long get_segment_id(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

get_sheet_antiparallel_info( (long)struct_id, (object)db_session, (int)sheet_id) -> str :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:423

    C++ signature :
        std::string get_sheet_antiparallel_info(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

get_shortest_among_4_vals( (float)arr_dis_inter_sheet) -> float :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:427

    C++ signature :
        double get_shortest_among_4_vals(double*)

get_size_sandwich_PK_id( (long)struct_id, (object)db_session, (int)sw_can_by_sh_id) -> int :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:434

    C++ signature :
        unsigned long get_size_sandwich_PK_id(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

get_start_end_res_num_in_the_longest_strand( (long)struct_id, (object)db_session, (int)sheet_id) -> object :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:441

    C++ signature :
        utility::vector1<protocols::features::strand_assembly::SandwichFragment, std::allocator<protocols::features::strand_assembly::SandwichFragment> > get_start_end_res_num_in_the_longest_strand(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

get_starting_res_for_connecting_strands( (long)struct_id, (object)db_session, (int)sw_can_by_sh_id, (int)former_res_end) -> pair_Size_Size :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:448

    C++ signature :
        std::pair<unsigned long, unsigned long> get_starting_res_for_connecting_strands(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long,unsigned long)

get_tag( (long)struct_id, (object)db_session) -> str :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:453

    C++ signature :
        std::string get_tag(unsigned long long,boost::shared_ptr<utility::sql_database::session>)

get_vec_AA_kind( (long)struct_id, (object)db_session, (int)sw_can_by_sh_id) -> vector1_Size :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:460

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > get_vec_AA_kind(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

get_vec_distinct_sheet_id( (long)struct_id, (object)db_session, (int)sw_can_by_sh_id) -> vector1_Size :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:466

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > get_vec_distinct_sheet_id(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

get_vec_of_sw_can_by_sh_id( (long)struct_id, (object)db_session) -> vector1_Size :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:471

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > get_vec_of_sw_can_by_sh_id(unsigned long long,boost::shared_ptr<utility::sql_database::session>)

get_vector_of_loop_AA_distribution( (long)struct_id, (object)db_session, (str)loop_kind) -> vector1_Size :
    protocols/features/strand_assembly/WriteToFileFromSandwichFeatures.hh:34

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > get_vector_of_loop_AA_distribution(unsigned long long,boost::shared_ptr<utility::sql_database::session>,std::string)

get_vector_of_strand_AA_distribution( (long)struct_id, (object)db_session, (str)heading_direction, (str)strand_location) -> vector1_Size :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:479

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > get_vector_of_strand_AA_distribution(unsigned long long,boost::shared_ptr<utility::sql_database::session>,std::string,std::string)

identify_sheet_id_by_residue_end( (long)struct_id, (object)db_session, (int)residue_end) -> int :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:485

    C++ signature :
        unsigned long identify_sheet_id_by_residue_end(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

is_this_strand_at_edge( (Pose)pose, (long)struct_id, (object)db_session, (int)sheet_id, (int)residue_begin, (int)residue_end, (float)min_CA_CA_dis_, (float)max_CA_CA_dis_) -> str :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:497

    C++ signature :
        std::string is_this_strand_at_edge(core::pose::Pose,unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long,unsigned long,unsigned long,double,double)

is_this_strand_at_edge_by_looking_db( (long)struct_id, (object)db_session, (int)residue_begin) -> str :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:504

    C++ signature :
        std::string is_this_strand_at_edge_by_looking_db(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

judge_facing( (long)struct_id, (object)db_session, (Pose)pose, (int)sheet_i, (int)sheet_j, (float)min_CA_CA_dis_, (float)max_CA_CA_dis_, (float)min_sheet_angle_by_four_term_cen_res_, (float)max_sheet_angle_by_four_term_cen_res_, (float)min_sheet_torsion_cen_res_, (float)max_sheet_torsion_cen_res_, (float)max_sheet_angle_with_cen_res_in_smaller_sheet_and_two_terminal_res_in_larger_sheet_) -> int :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:519

    C++ signature :
        int judge_facing(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose,unsigned long,unsigned long,double,double,double,double,double,double,double)

prepare_WriteToDB_sandwich( (long)struct_id, (object)db_session) -> object :
    protocols/features/strand_assembly/WriteToDBFromSandwichFeatures.hh:55

    C++ signature :
        utility::vector1<protocols::features::strand_assembly::SandwichFragment, std::allocator<protocols::features::strand_assembly::SandwichFragment> > prepare_WriteToDB_sandwich(unsigned long long,boost::shared_ptr<utility::sql_database::session>)

prepare_and_write_number_of_electrostatic_interactions_of_residues_to_files( (str)tag, (long)struct_id, (object)db_session, (Pose)pose, (object)bs_of_sw_can_by_sh, (float)distance_cutoff_for_electrostatic_interactions_, (float)CB_b_factor_cutoff_for_electrostatic_interactions_, (int)min_primary_seq_distance_diff_for_electrostatic_interactions_, (bool)write_electrostatic_interactions_of_surface_residues_in_a_strand_, (bool)write_electrostatic_interactions_of_all_residues_in_a_strand_, (bool)write_electrostatic_interactions_of_all_residues_, (int)rkde_PK_id_counter, (int)rkde_in_strands_PK_id_counter) -> int :
    protocols/features/strand_assembly/WriteToFileFromSandwichFeatures.hh:50

    C++ signature :
        unsigned long prepare_and_write_number_of_electrostatic_interactions_of_residues_to_files(std::string,unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose,utility::vector1<protocols::features::strand_assembly::SandwichFragment, std::allocator<protocols::features::strand_assembly::SandwichFragment> >,double,double,unsigned long,bool,bool,bool,unsigned long,unsigned long)

process_decoy( (Pose)dssp_pose, (ScoreFunction)) -> None :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:525

    C++ signature :
        void process_decoy(core::pose::Pose {lvalue},core::scoring::ScoreFunction)

report_heading_directions_of_all_AA_in_a_strand( (long)struct_id, (object)db_session, (Pose)pose, (int)sw_can_by_sh_id, (int)sheet_id, (int)residue_begin, (int)residue_end) -> str :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:535

    C++ signature :
        std::string report_heading_directions_of_all_AA_in_a_strand(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose,unsigned long,unsigned long,unsigned long,unsigned long)

retrieve_residue_num_of_rkde( (long)struct_id, (object)db_session, (int)sw_can_by_sh_id, (str)dssp_code, (str)heading_direction) -> vector1_int :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:543

    C++ signature :
        utility::vector1<int, std::allocator<int> > retrieve_residue_num_of_rkde(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long,std::string,std::string)

round_to_Real( (float)x) -> float :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:551

    C++ signature :
        double round_to_Real(double)

round_to_Size( (float)x) -> int :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:555

    C++ signature :
        unsigned long round_to_Size(double)

round_to_float( (float)x) -> float :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:547

    C++ signature :
        float round_to_float(float)

see_edge_or_core_or_loop_or_short_edge( (long)struct_id, (object)db_session, (int)residue_num) -> str :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:561

    C++ signature :
        std::string see_edge_or_core_or_loop_or_short_edge(unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

see_whether_sheet_is_antiparallel( (long)struct_id, (object)db_session, (Pose)pose, (int)i_sheet, (float)min_CA_CA_dis_, (float)max_CA_CA_dis_, (float)min_C_O_N_angle_) -> str :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:582

    C++ signature :
        std::string see_whether_sheet_is_antiparallel(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose,unsigned long,double,double,double)

see_whether_sheets_can_be_combined( (long)struct_id, (object)db_session, (Pose)pose, (int)i_sheet, (int)j_sheet, (float)min_CA_CA_dis_, (float)max_CA_CA_dis_, (float)min_C_O_N_angle_) -> bool :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:572

    C++ signature :
        bool see_whether_sheets_can_be_combined(unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose,unsigned long,unsigned long,double,double,double)

see_whether_this_sw_has_SS_bond( (long)struct_id, (object)db_session) -> bool :
    protocols/features/strand_assembly/CheckForSandwichFeatures.hh:587

    C++ signature :
        bool see_whether_this_sw_has_SS_bond(unsigned long long,boost::shared_ptr<utility::sql_database::session>)

write_AA_distribution_with_direction_to_a_file( (str)tag, (long)struct_id, (object)db_session) -> int :
    protocols/features/strand_assembly/WriteToFileFromSandwichFeatures.hh:56

    C++ signature :
        unsigned long write_AA_distribution_with_direction_to_a_file(std::string,unsigned long long,boost::shared_ptr<utility::sql_database::session>)

write_AA_distribution_without_direction_to_a_file( (str)tag, (long)struct_id, (object)db_session) -> int :
    protocols/features/strand_assembly/WriteToFileFromSandwichFeatures.hh:63

    C++ signature :
        unsigned long write_AA_distribution_without_direction_to_a_file(std::string,unsigned long long,boost::shared_ptr<utility::sql_database::session>)

write_AA_kind_to_a_file( (str)tag, (long)struct_id, (object)db_session, (int)sw_can_by_sh_id, (int)sw_res_size) -> int :
    protocols/features/strand_assembly/WriteToFileFromSandwichFeatures.hh:71

    C++ signature :
        unsigned long write_AA_kind_to_a_file(std::string,unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long,unsigned long)

write_beta_sheet_capping_info_to_a_file( (str)tag, (Pose)pose, (object)bs_of_sw_can_by_sh, (int)primary_seq_distance_cutoff_for_beta_sheet_capping_before_N_term_capping_, (int)primary_seq_distance_cutoff_for_beta_sheet_capping_after_N_term_capping_, (int)primary_seq_distance_cutoff_for_beta_sheet_capping_before_C_term_capping_, (int)primary_seq_distance_cutoff_for_beta_sheet_capping_after_C_term_capping_) -> int :
    protocols/features/strand_assembly/WriteToFileFromSandwichFeatures.hh:81

    C++ signature :
        unsigned long write_beta_sheet_capping_info_to_a_file(std::string,core::pose::Pose,utility::vector1<protocols::features::strand_assembly::SandwichFragment, std::allocator<protocols::features::strand_assembly::SandwichFragment> >,int,int,int,int)

write_chain_B_resNum_to_a_file( (str)tag, (long)struct_id, (object)db_session, (int)sw_can_by_sh_id) -> int :
    protocols/features/strand_assembly/WriteToFileFromSandwichFeatures.hh:89

    C++ signature :
        unsigned long write_chain_B_resNum_to_a_file(std::string,unsigned long long,boost::shared_ptr<utility::sql_database::session>,unsigned long)

write_heading_direction_of_all_AA_in_a_strand_to_a_file( (str)tag, (long)struct_id, (object)db_session, (Pose)pose, (object)bs_of_sw_can_by_sh) -> int :
    protocols/features/strand_assembly/WriteToFileFromSandwichFeatures.hh:97

    C++ signature :
        unsigned long write_heading_direction_of_all_AA_in_a_strand_to_a_file(std::string,unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose,utility::vector1<protocols::features::strand_assembly::SandwichFragment, std::allocator<protocols::features::strand_assembly::SandwichFragment> >)

write_number_of_electrostatic_interactions_of_residues_to_files( (str)tag, (long)struct_id, (object)db_session, (Pose)pose, (str)dssp_code, (str)heading_direction, (float)distance_cutoff_for_electrostatic_interactions_, (float)CB_b_factor_cutoff_for_electrostatic_interactions_, (int)min_primary_seq_distance_diff_for_electrostatic_interactions_) -> int :
    protocols/features/strand_assembly/WriteToFileFromSandwichFeatures.hh:109

    C++ signature :
        unsigned long write_number_of_electrostatic_interactions_of_residues_to_files(std::string,unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose,std::string,std::string,double,double,unsigned long)

write_p_aa_pp_of_AAs_to_a_file( (str)tag, (Pose)dssp_pose) -> int :
    protocols/features/strand_assembly/WriteToFileFromSandwichFeatures.hh:114

    C++ signature :
        unsigned long write_p_aa_pp_of_AAs_to_a_file(std::string,core::pose::Pose {lvalue})

write_phi_psi_of_each_residue_to_a_file( (str)tag, (Pose)dssp_pose, (object)bs_of_sw_can_by_sh, (bool)write_phi_psi_of_E_, (bool)write_phi_psi_of_all_, (int)max_num_sw_per_pdb_, (long)struct_id, (object)db_session, (float)min_CA_CA_dis_, (float)max_CA_CA_dis_) -> int :
    protocols/features/strand_assembly/WriteToFileFromSandwichFeatures.hh:128

    C++ signature :
        unsigned long write_phi_psi_of_each_residue_to_a_file(std::string,core::pose::Pose {lvalue},utility::vector1<protocols::features::strand_assembly::SandwichFragment, std::allocator<protocols::features::strand_assembly::SandwichFragment> >,bool,bool,unsigned long,unsigned long long,boost::shared_ptr<utility::sql_database::session>,double,double)

write_rama_of_AAs_to_a_file( (str)tag, (Pose)dssp_pose) -> int :
    protocols/features/strand_assembly/WriteToFileFromSandwichFeatures.hh:134

    C++ signature :
        unsigned long write_rama_of_AAs_to_a_file(std::string,core::pose::Pose {lvalue})

write_resfile_to_a_file( (str)tag, (long)struct_id, (object)db_session, (Pose)pose, (object)bs_of_sw_can_by_sh, (bool)write_resfile_NOT_FWY_on_surface_) -> int :
    protocols/features/strand_assembly/WriteToFileFromSandwichFeatures.hh:144

    C++ signature :
        unsigned long write_resfile_to_a_file(std::string,unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose,utility::vector1<protocols::features::strand_assembly::SandwichFragment, std::allocator<protocols::features::strand_assembly::SandwichFragment> >,bool)

write_resfile_to_a_file_when_seq_rec_is_bad( (str)tag, (long)struct_id, (object)db_session, (Pose)pose, (object)bs_of_sw_can_by_sh, (bool)write_resfile_to_minimize_too_much_hydrophobic_surface_, (bool)write_resfile_to_minimize_too_many_core_heading_FWY_on_core_strands_, (bool)write_resfile_to_minimize_too_many_core_heading_FWY_on_edge_strands_) -> int :
    protocols/features/strand_assembly/WriteToFileFromSandwichFeatures.hh:155

    C++ signature :
        unsigned long write_resfile_to_a_file_when_seq_rec_is_bad(std::string,unsigned long long,boost::shared_ptr<utility::sql_database::session>,core::pose::Pose,utility::vector1<protocols::features::strand_assembly::SandwichFragment, std::allocator<protocols::features::strand_assembly::SandwichFragment> >,bool,bool,bool)