Module _protocols_stepwise_modeler_rna_phosphate_

check_phosphate_contacts_donor( (Pose)pose, (int)n) -> bool :
    protocols/stepwise/modeler/rna/phosphate/util.hh:61

    C++ signature :
        bool check_phosphate_contacts_donor(core::pose::Pose,unsigned long)

check_phosphate_contacts_donor( (vector1_xyzVector_Real)op_xyz_list, (vector1_xyzVector_Real)donor_atom_xyz_list, (vector1_xyzVector_Real)donor_base_atom_xyz_list) -> bool :
    protocols/stepwise/modeler/rna/phosphate/util.hh:58

    C++ signature :
        bool check_phosphate_contacts_donor(utility::vector1<numeric::xyzVector<double>, std::allocator<numeric::xyzVector<double> > >,utility::vector1<numeric::xyzVector<double>, std::allocator<numeric::xyzVector<double> > >,utility::vector1<numeric::xyzVector<double>, std::allocator<numeric::xyzVector<double> > >)

copy_over_phosphate_variants( (Pose)pose, (Pose)reference_pose, (vector1_Size)res_list) -> None :
    protocols/stepwise/modeler/rna/phosphate/util.hh:47

    C++ signature :
        void copy_over_phosphate_variants(core::pose::Pose {lvalue},core::pose::Pose,utility::vector1<unsigned long, std::allocator<unsigned long> >)

copy_over_phosphate_variants( (Pose)pose, (Pose)reference_pose, (object)phosphate_move_list) -> None :
    protocols/stepwise/modeler/rna/phosphate/util.hh:43

    C++ signature :
        void copy_over_phosphate_variants(core::pose::Pose {lvalue},core::pose::Pose,utility::vector1<protocols::stepwise::modeler::rna::phosphate::PhosphateMove, std::allocator<protocols::stepwise::modeler::rna::phosphate::PhosphateMove> >)

correctly_position_five_prime_phosphate( (Pose)pose, (int)res) -> None :
    protocols/stepwise/modeler/rna/phosphate/util.hh:38

    C++ signature :
        void correctly_position_five_prime_phosphate(core::pose::Pose {lvalue},unsigned long)

detect_phosphate_contacts( (Pose)pose) -> vector1_bool :
    protocols/stepwise/modeler/rna/phosphate/util.hh:71

    C++ signature :
        utility::vector1<bool, std::allocator<bool> > detect_phosphate_contacts(core::pose::Pose)

get_phosphate_atom_and_neighbor_list( (Pose)pose, (PhosphateMove)phosphate_move_, (vector1_xyzVector_Real)donor_atom_xyz_list, (vector1_xyzVector_Real)donor_base_atom_xyz_list, (vector1_Size)neighbor_copy_dofs) -> None :
    protocols/stepwise/modeler/rna/phosphate/util.hh:68

    C++ signature :
        void get_phosphate_atom_and_neighbor_list(core::pose::Pose,protocols::stepwise::modeler::rna::phosphate::PhosphateMove,utility::vector1<numeric::xyzVector<double>, std::allocator<numeric::xyzVector<double> > > {lvalue},utility::vector1<numeric::xyzVector<double>, std::allocator<numeric::xyzVector<double> > > {lvalue},utility::vector1<unsigned long, std::allocator<unsigned long> > {lvalue})

get_phosphate_scorefxn( (EnergyMethodOptions)options) -> ScoreFunction :
    protocols/stepwise/modeler/rna/phosphate/util.hh:53

    C++ signature :
        boost::shared_ptr<core::scoring::ScoreFunction const> get_phosphate_scorefxn(core::scoring::methods::EnergyMethodOptions)

get_phosphate_scorefxn() -> ScoreFunction :
    protocols/stepwise/modeler/rna/phosphate/util.hh:50

    C++ signature :
        boost::shared_ptr<core::scoring::ScoreFunction const> get_phosphate_scorefxn()

remove_terminal_phosphates( (Pose)pose, (vector1_Size)res_list) -> None :
    protocols/stepwise/modeler/rna/phosphate/util.hh:35

    C++ signature :
        void remove_terminal_phosphates(core::pose::Pose {lvalue},utility::vector1<unsigned long, std::allocator<unsigned long> >)

remove_terminal_phosphates( (Pose)pose) -> None :
    protocols/stepwise/modeler/rna/phosphate/util.hh:32

    C++ signature :
        void remove_terminal_phosphates(core::pose::Pose {lvalue})

setup_three_prime_phosphate_based_on_next_residue( (Pose)pose, (int)n) -> None :
    protocols/stepwise/modeler/rna/phosphate/util.hh:74

    C++ signature :
        void setup_three_prime_phosphate_based_on_next_residue(core::pose::Pose {lvalue},unsigned long)

to_string( (PhosphateTerminus)phosphate_terminus) -> str :
    protocols/stepwise/modeler/rna/phosphate/PhosphateMove.hh:36

    C++ signature :
        std::string to_string(protocols::stepwise::modeler::rna::phosphate::PhosphateTerminus)

FIVE_PRIME_PHOSPHATE

Value:

rosetta.protocols.stepwise.modeler.rna.phosphate._protocols_stepwise_m odeler_rna_phosphate_.PhosphateTerminus.FIVE_PRIME_PHOSPHATE

NONE

Value:

rosetta.protocols.stepwise.modeler.rna.phosphate._protocols_stepwise_m odeler_rna_phosphate_.PhosphateTerminus.NONE

THREE_PRIME_PHOSPHATE

Value:

rosetta.protocols.stepwise.modeler.rna.phosphate._protocols_stepwise_m odeler_rna_phosphate_.PhosphateTerminus.THREE_PRIME_PHOSPHATE