Module _protocols_stepwise_legacy_modeler_rna_'

apply_rotamer( (Pose)pose, (object)rotamer_list) -> None :
    protocols/stepwise/legacy/modeler/rna/util.hh:88

    C++ signature :
        void apply_rotamer(core::pose::Pose {lvalue},utility::vector1<protocols::stepwise::modeler::rna::Torsion_Info, std::allocator<protocols::stepwise::modeler::rna::Torsion_Info> >)

check_can_append( (vector1_Size)seq_num_list) -> bool :
    protocols/stepwise/legacy/modeler/rna/util.hh:37

    C++ signature :
        bool check_can_append(utility::vector1<unsigned long, std::allocator<unsigned long> >)

check_can_prepend( (vector1_Size)seq_num_list) -> bool :
    protocols/stepwise/legacy/modeler/rna/util.hh:34

    C++ signature :
        bool check_can_prepend(utility::vector1<unsigned long, std::allocator<unsigned long> >)

    protocols/stepwise/legacy/modeler/rna/StepWiseRNA_PoseSetupFromCommandLine.hh:62

    C++ signature :
        void ensure_directory_for_out_silent_file_exists()

Returns: None :

full_length_rmsd_over_residue_list( (Pose)pose1, (Pose)pose2, (vector1_Size)residue_list, (str)full_sequence, (bool)verbose, (bool)ignore_virtual_atom) -> float :
    protocols/stepwise/legacy/modeler/rna/util.hh:68

    C++ signature :
        double full_length_rmsd_over_residue_list(core::pose::Pose,core::pose::Pose,utility::vector1<unsigned long, std::allocator<unsigned long> >,std::string,bool,bool)

get_input_res( (int)nres, (str)pose_num) -> vector1_Size :
    protocols/stepwise/legacy/modeler/rna/StepWiseRNA_PoseSetupFromCommandLine.hh:39

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > get_input_res(unsigned long,std::string)

is_same_sugar_pucker( (Pose)current_pose, (Pose)cluster_center_pose, (int)seq_num) -> bool :
    protocols/stepwise/legacy/modeler/rna/util.hh:91

    C++ signature :
        bool is_same_sugar_pucker(core::pose::Pose,core::pose::Pose,unsigned long)

output_bool_list( (str)tag, (vector1_Size)size_list, (OStream)outstream [, (int)spacing=40]) -> None :
    protocols/stepwise/legacy/modeler/rna/util.hh:52

    C++ signature :
        void output_bool_list(std::string,utility::vector1<unsigned long, std::allocator<unsigned long> >,std::ostream {lvalue} [,unsigned long=40])

output_bool_list( (str)tag, (vector1_bool)bool_list, (OStream)outstream [, (int)spacing=40]) -> None :
    protocols/stepwise/legacy/modeler/rna/util.hh:49

    C++ signature :
        void output_bool_list(std::string,utility::vector1<bool, std::allocator<bool> >,std::ostream {lvalue} [,unsigned long=40])

output_fold_tree_info( (Pose)pose, (str)pose_name, (OStream)outstream) -> None :
    protocols/stepwise/legacy/modeler/rna/util.hh:64

    C++ signature :
        void output_fold_tree_info(core::pose::Pose,std::string,std::ostream {lvalue})

output_fold_tree_info( (FoldTree)fold_tree, (str)pose_name, (OStream)outstream) -> None :
    protocols/stepwise/legacy/modeler/rna/util.hh:61

    C++ signature :
        void output_fold_tree_info(core::kinematics::FoldTree,std::string,std::ostream {lvalue})

output_pair_size( (vector1_pair_Size_Size)pair_size_vector, (str)output_string, (OStream)outstream [, (int)spacing=40]) -> None :
    protocols/stepwise/legacy/modeler/rna/util.hh:44

    C++ signature :
        void output_pair_size(utility::vector1<std::pair<unsigned long, unsigned long>, std::allocator<std::pair<unsigned long, unsigned long> > >,std::string,std::ostream {lvalue} [,unsigned long=40])

output_pair_size( (pair_Size_Size)pair_size, (OStream)outstream) -> None :
    protocols/stepwise/legacy/modeler/rna/util.hh:41

    C++ signature :
        void output_pair_size(std::pair<unsigned long, unsigned long>,std::ostream {lvalue})

output_size_list( (str)tag, (vector1_Size)size_list, (OStream)outstream [, (int)spacing=40]) -> None :
    protocols/stepwise/legacy/modeler/rna/util.hh:55

    C++ signature :
        void output_size_list(std::string,utility::vector1<unsigned long, std::allocator<unsigned long> >,std::ostream {lvalue} [,unsigned long=40])

print_WorkingParameters_info( (object)const_WP, (str)WP_name, (OStream)outstream [, (bool)is_simple_full_length_WP=False]) -> None :
    protocols/stepwise/legacy/modeler/rna/util.hh:114

    C++ signature :
        void print_WorkingParameters_info(boost::shared_ptr<protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters const>,std::string,std::ostream {lvalue} [,bool=False])

print_WorkingParameters_info( (object)WP, (str)WP_name, (OStream)outstream [, (bool)is_simple_full_length_WP=False]) -> None :
    protocols/stepwise/legacy/modeler/rna/util.hh:111

    C++ signature :
        void print_WorkingParameters_info(boost::shared_ptr<protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters>,std::string,std::ostream {lvalue} [,bool=False])

setup_bulge_jump_point( (Pose)pose, (int)moving_base, (int)reference_base [, (bool)verbose=False]) -> int :
    protocols/stepwise/legacy/modeler/rna/util.hh:85

    C++ signature :
        unsigned long setup_bulge_jump_point(core::pose::Pose {lvalue},unsigned long,unsigned long [,bool=False])

sort_pair_list( (vector1_pair_Size_Size)pair_list) -> None :
    protocols/stepwise/legacy/modeler/rna/util.hh:58

    C++ signature :
        void sort_pair_list(utility::vector1<std::pair<unsigned long, unsigned long>, std::allocator<std::pair<unsigned long, unsigned long> > >)