Module _protocols_features_

deserialize_db_listener_data( (str)data) -> pair_Size_Size :
    protocols/features/util.hh:73

    C++ signature :
        std::pair<unsigned long, unsigned long> deserialize_db_listener_data(std::string)

deserialize_xyz_coords( (str)data, (int)natoms) -> vector1_xyzVector_Real :
    protocols/features/util.hh:90

    C++ signature :
        utility::vector1<numeric::xyzVector<double>, std::allocator<numeric::xyzVector<double> > > deserialize_xyz_coords(std::string,unsigned long)

    protocols/features/DatabaseFilters.hh:41

    C++ signature :
        boost::shared_ptr<protocols::features::DatabaseFilter> get_DB_filter_ptr()

Returns: DatabaseFilter :

get_batch_id( (long)struct_id, (object)db_session) -> int :
    protocols/features/util.hh:81

    C++ signature :
        unsigned long get_batch_id(unsigned long long,boost::shared_ptr<utility::sql_database::session>)

get_current_structure_count( (object)db_session, (int)protocol_id [, (str)input_tag='']) -> int :
    protocols/features/DatabaseStatements.hh:32

    C++ signature :
        unsigned long get_current_structure_count(boost::shared_ptr<utility::sql_database::session>,unsigned long [,std::string=''])

get_protocol_and_batch_id( (str)batch_name, (str)batch_description, (object)features_reporters, (object)db_session) -> pair_Size_Size :
    Get the protocol and batch ids or create them if they don't
    yet exist. For MPI protocols, only allow the head node to create
    protocol or batch ids and have the other nodes ask the head node
    for the info.
    

    C++ signature :
        std::pair<unsigned long, unsigned long> get_protocol_and_batch_id(std::string,std::string,utility::vector1<boost::shared_ptr<protocols::features::FeaturesReporter>, std::allocator<boost::shared_ptr<protocols::features::FeaturesReporter> > >,boost::shared_ptr<utility::sql_database::session>)

get_question_mark_string( (int)n) -> str :
    Returns (?,?,?) With question marks of length n to help create database query.
    

    C++ signature :
        std::string get_question_mark_string(unsigned long)

get_score_for_struct_id_and_score_term_from_job_data( (object)db_session, (long)struct_id, (str)score_term) -> float :
    protocols/features/DatabaseStatements.hh:80

    C++ signature :
        double get_score_for_struct_id_and_score_term_from_job_data(boost::shared_ptr<utility::sql_database::session>,unsigned long long,std::string)

get_score_for_struct_id_and_score_term_from_score_data( (object)db_session, (long)struct_id, (int)score_type_id) -> float :
    protocols/features/DatabaseStatements.hh:85

    C++ signature :
        double get_score_for_struct_id_and_score_term_from_score_data(boost::shared_ptr<utility::sql_database::session>,unsigned long long,unsigned long)

get_score_type_id_from_score_term( (object)db_session, (int)protocol_id, (str)score_term) -> int :
    protocols/features/DatabaseStatements.hh:37

    C++ signature :
        unsigned long get_score_type_id_from_score_term(boost::shared_ptr<utility::sql_database::session>,unsigned long,std::string)

get_struct_id_with_highest_score_from_job_data( (object)db_session, (str)score_term, (int)protocol_id [, (str)input_tag='']) -> long :
    protocols/features/DatabaseStatements.hh:55

    C++ signature :
        unsigned long long get_struct_id_with_highest_score_from_job_data(boost::shared_ptr<utility::sql_database::session>,std::string,unsigned long [,std::string=''])

get_struct_id_with_highest_score_from_score_data( (object)db_session, (int)score_type_id, (int)protocol_id [, (str)input_tag='']) -> long :
    protocols/features/DatabaseStatements.hh:61

    C++ signature :
        unsigned long long get_struct_id_with_highest_score_from_score_data(boost::shared_ptr<utility::sql_database::session>,unsigned long,unsigned long [,std::string=''])

get_struct_id_with_lowest_score_from_job_data( (object)db_session, (str)score_term, (int)protocol_id [, (str)input_tag='']) -> long :
    protocols/features/DatabaseStatements.hh:42

    C++ signature :
        unsigned long long get_struct_id_with_lowest_score_from_job_data(boost::shared_ptr<utility::sql_database::session>,std::string,unsigned long [,std::string=''])

get_struct_id_with_lowest_score_from_score_data( (object)db_session, (int)score_type_id, (int)protocol_id [, (str)input_tag='']) -> long :
    protocols/features/DatabaseStatements.hh:48

    C++ signature :
        unsigned long long get_struct_id_with_lowest_score_from_score_data(boost::shared_ptr<utility::sql_database::session>,unsigned long,unsigned long [,std::string=''])

get_struct_id_with_nth_lowest_score_from_job_data( (object)db_session, (str)score_term, (int)cutoff_index, (int)protocol_id, (str)input_tag) -> long :
    protocols/features/DatabaseStatements.hh:68

    C++ signature :
        unsigned long long get_struct_id_with_nth_lowest_score_from_job_data(boost::shared_ptr<utility::sql_database::session>,std::string,unsigned long,unsigned long,std::string)

get_struct_id_with_nth_lowest_score_from_score_data( (object)db_session, (int)score_type_id, (int)cutoff_index, (int)protocol_id, (str)input_tag) -> long :
    protocols/features/DatabaseStatements.hh:75

    C++ signature :
        unsigned long long get_struct_id_with_nth_lowest_score_from_score_data(boost::shared_ptr<utility::sql_database::session>,unsigned long,unsigned long,unsigned long,std::string)

serialize_ids( (int)protocol_id, (str)batch_name, (int)batch_id) -> str :
    protocols/features/util.hh:75

    C++ signature :
        std::string serialize_ids(int,std::string,unsigned long)

serialize_residue_xyz_coords( (Residue)residue) -> str :
    protocols/features/util.hh:88

    C++ signature :
        std::string serialize_residue_xyz_coords(core::conformation::Residue)

set_protocol_and_batch_id( (int)protocol_id, (int)batch_id, (str)batch_name, (str)batch_description, (object)features_reporters, (object)db_session) -> None :
    write the given protocol and batch ids to the database. The protocol and batches
    features reporters will check for an existing entry with the same key, and write if one
    does not exist. Not recommended for parallel use as it is subject to race conditions (due
    to the nature of 'insert or ignore' type database writing)
    

    C++ signature :
        void set_protocol_and_batch_id(unsigned long,unsigned long,std::string,std::string,utility::vector1<boost::shared_ptr<protocols::features::FeaturesReporter>, std::allocator<boost::shared_ptr<protocols::features::FeaturesReporter> > >,boost::shared_ptr<utility::sql_database::session>)

struct_ids_from_tag( (object)db_session, (str)tag) -> object :
    protocols/features/util.hh:86

    C++ signature :
        utility::vector1<unsigned long long, std::allocator<unsigned long long> > struct_ids_from_tag(boost::shared_ptr<utility::sql_database::session>,std::string)

write_batch_reports_table( (object)features_reporters, (int)batch_id, (object)db_session) -> None :
    write the linking table between features reporters
    and batches. This happens here so that the protocol/batch
    id framework can be used to prevent duplicate key entries.
    This function gets called when the batch id is written.
    

    C++ signature :
        void write_batch_reports_table(utility::vector1<boost::shared_ptr<protocols::features::FeaturesReporter>, std::allocator<boost::shared_ptr<protocols::features::FeaturesReporter> > >,unsigned long,boost::shared_ptr<utility::sql_database::session>)

write_features_reporters_table( (object)features_reporters, (object)db_session) -> None :
    protocols/features/util.hh:60

    C++ signature :
        void write_features_reporters_table(utility::vector1<boost::shared_ptr<protocols::features::FeaturesReporter>, std::allocator<boost::shared_ptr<protocols::features::FeaturesReporter> > >,boost::shared_ptr<utility::sql_database::session>)

A

Value:

rosetta.protocols.features._protocols_features_.RamachandranHash.A

B

Value:

rosetta.protocols.features._protocols_features_.RamachandranHash.B

E

Value:

rosetta.protocols.features._protocols_features_.RamachandranHash.E

L

Value:

rosetta.protocols.features._protocols_features_.RamachandranHash.L

hbdef_AHDIST

Value:

rosetta.protocols.features._protocols_features_.HBDefType.hbdef_AHDIST

hbdef_ENERGY

Value:

rosetta.protocols.features._protocols_features_.HBDefType.hbdef_ENERGY

hbdef_MAX

Value:

rosetta.protocols.features._protocols_features_.HBDefType.hbdef_MAX

hbdef_NONE

Value:

rosetta.protocols.features._protocols_features_.HBDefType.hbdef_NONE

number_of_ramachandran_hashes

Value:

rosetta.protocols.features._protocols_features_.RamachandranHash.numbe r_of_ramachandran_hashes