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Package rosetta :: Package core :: Package fragment :: Module _core_fragment_ :: Class AnnotatedFragData
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Class AnnotatedFragData

 object --+        
          |        
??.instance --+    
              |    
       FragData --+
                  |
                 AnnotatedFragData

FragData that contains additional information

Instance Methods [hide private]
 
__init__(...)
__init__( (object)arg1, (str)pdb_id, (int)start_pos [, (str)chain='_']) -> None : core/fragment/FragData.hh:202
 
apply(...)
apply( (AnnotatedFragData)arg1, (Pose), (Frame)) -> int : core/fragment/FragData.hh:73
 
apply_ss(...)
apply_ss( (AnnotatedFragData)arg1, (MoveMap), (str)ss, (Frame)) -> int : core/fragment/FragData.hh:77
 
chain(...)
chain( (AnnotatedFragData)arg1) -> str : core/fragment/FragData.hh:227
 
clone(...)
clone( (AnnotatedFragData)arg1) -> FragData : core/fragment/FragData.hh:212
 
copy(...)
copy( (AnnotatedFragData)arg1, (FragData)frag_data) -> None : core/fragment/FragData.hh:214
 
generate_sub_fragment(...)
generate_sub_fragment( (AnnotatedFragData)arg1, (int)start, (int)stop) -> FragData : core/fragment/FragData.hh:217
 
is_applicable(...)
is_applicable( (AnnotatedFragData)arg1, (MoveMap), (Frame)) -> int : core/fragment/FragData.hh:82
 
pdbid(...)
pdbid( (AnnotatedFragData)arg1) -> str : core/fragment/FragData.hh:219
 
pdbpos(...)
pdbpos( (AnnotatedFragData)arg1) -> int : core/fragment/FragData.hh:223
 
show(...)
show( (AnnotatedFragData)arg1, (OStream)out) -> None : core/fragment/FragData.hh:148
 
show_classic(...)
show_classic( (AnnotatedFragData)arg1, (OStream)out) -> None : core/fragment/FragData.hh:150
 
steal(...)
steal( (AnnotatedFragData)arg1, (Pose), (int)start, (int)end) -> bool : core/fragment/FragData.hh:85

Inherited from FragData: __getstate__, __reduce__, __reduce_ex__, __setstate__, __str__, add_residue, get_residue, get_self_ptr, is_compatible, is_valid, score, secstruct, sequence, set_residue, set_score, set_sequence, set_valid, size

Inherited from unreachable.instance: __new__

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __repr__, __setattr__, __sizeof__, __subclasshook__

Class Variables [hide private]

Inherited from FragData: __instance_size__

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(...)
(Constructor)

  

__init__( (object)arg1, (str)pdb_id, (int)start_pos [, (str)chain='_']) -> None :
    core/fragment/FragData.hh:202

    C++ signature :
        void __init__(_object*,std::string,unsigned long [,char='_'])

__init__( (object)arg1, (AnnotatedFragData)) -> None :
    FragData that contains additional information
    

    C++ signature :
        void __init__(_object*,core::fragment::AnnotatedFragData)

__init__( (object)arg1, (str)pdb_id, (int)start_pos, (FragData)frag [, (str)chain='_']) -> None :
    core/fragment/FragData.hh:207

    C++ signature :
        void __init__(_object*,std::string,unsigned long,core::fragment::FragData [,char='_'])
Overrides: object.__init__

apply(...)

  

apply( (AnnotatedFragData)arg1, (Pose), (Frame)) -> int :
    core/fragment/FragData.hh:73

    C++ signature :
        unsigned long apply(core::fragment::AnnotatedFragData {lvalue},core::pose::Pose {lvalue},core::fragment::Frame)

apply( (AnnotatedFragData)arg1, (Pose), (Frame)) -> int :

    C++ signature :
        unsigned long apply(AnnotatedFragData_exposer_callback {lvalue},core::pose::Pose {lvalue},core::fragment::Frame)

apply( (AnnotatedFragData)arg1, (MoveMap), (Pose), (int)start, (int)end) -> int :
    core/fragment/FragData.hh:69

    C++ signature :
        unsigned long apply(core::fragment::AnnotatedFragData {lvalue},core::kinematics::MoveMap,core::pose::Pose {lvalue},unsigned long,unsigned long)

apply( (AnnotatedFragData)arg1, (MoveMap), (Pose), (int)start, (int)end) -> int :

    C++ signature :
        unsigned long apply(AnnotatedFragData_exposer_callback {lvalue},core::kinematics::MoveMap,core::pose::Pose {lvalue},unsigned long,unsigned long)

apply( (AnnotatedFragData)arg1, (MoveMap), (Pose), (Frame)) -> int :
    core/fragment/FragData.hh:70

    C++ signature :
        unsigned long apply(core::fragment::AnnotatedFragData {lvalue},core::kinematics::MoveMap,core::pose::Pose {lvalue},core::fragment::Frame)

apply( (AnnotatedFragData)arg1, (MoveMap), (Pose), (Frame)) -> int :

    C++ signature :
        unsigned long apply(AnnotatedFragData_exposer_callback {lvalue},core::kinematics::MoveMap,core::pose::Pose {lvalue},core::fragment::Frame)

apply( (AnnotatedFragData)arg1, (Pose), (int)start, (int)end) -> int :
    core/fragment/FragData.hh:74

    C++ signature :
        unsigned long apply(core::fragment::AnnotatedFragData {lvalue},core::pose::Pose {lvalue},unsigned long,unsigned long)

apply( (AnnotatedFragData)arg1, (Pose), (int)start, (int)end) -> int :

    C++ signature :
        unsigned long apply(AnnotatedFragData_exposer_callback {lvalue},core::pose::Pose {lvalue},unsigned long,unsigned long)
Overrides: FragData.apply

apply_ss(...)

  

apply_ss( (AnnotatedFragData)arg1, (MoveMap), (str)ss, (Frame)) -> int :
    core/fragment/FragData.hh:77

    C++ signature :
        unsigned long apply_ss(core::fragment::AnnotatedFragData {lvalue},core::kinematics::MoveMap,std::string {lvalue},core::fragment::Frame)

apply_ss( (AnnotatedFragData)arg1, (MoveMap), (str)ss, (Frame)) -> int :

    C++ signature :
        unsigned long apply_ss(AnnotatedFragData_exposer_callback {lvalue},core::kinematics::MoveMap,std::string {lvalue},core::fragment::Frame)
Overrides: FragData.apply_ss

chain(...)

  

chain( (AnnotatedFragData)arg1) -> str :
    core/fragment/FragData.hh:227

    C++ signature :
        char chain(core::fragment::AnnotatedFragData {lvalue})

chain( (AnnotatedFragData)arg1) -> str :

    C++ signature :
        char chain(AnnotatedFragData_exposer_callback {lvalue})
Overrides: FragData.chain

clone(...)

  

clone( (AnnotatedFragData)arg1) -> FragData :
    core/fragment/FragData.hh:212

    C++ signature :
        boost::shared_ptr<core::fragment::FragData> clone(core::fragment::AnnotatedFragData {lvalue})

clone( (AnnotatedFragData)arg1) -> FragData :

    C++ signature :
        boost::shared_ptr<core::fragment::FragData> clone(AnnotatedFragData_exposer_callback {lvalue})
Overrides: FragData.clone

copy(...)

  

copy( (AnnotatedFragData)arg1, (FragData)frag_data) -> None :
    core/fragment/FragData.hh:214

    C++ signature :
        void copy(core::fragment::AnnotatedFragData {lvalue},core::fragment::FragData)

copy( (AnnotatedFragData)arg1, (FragData)frag_data) -> None :

    C++ signature :
        void copy(AnnotatedFragData_exposer_callback {lvalue},core::fragment::FragData)
Overrides: FragData.copy

generate_sub_fragment(...)

  

generate_sub_fragment( (AnnotatedFragData)arg1, (int)start, (int)stop) -> FragData :
    core/fragment/FragData.hh:217

    C++ signature :
        boost::shared_ptr<core::fragment::FragData> generate_sub_fragment(core::fragment::AnnotatedFragData {lvalue},unsigned long,unsigned long)

generate_sub_fragment( (AnnotatedFragData)arg1, (int)start, (int)stop) -> FragData :

    C++ signature :
        boost::shared_ptr<core::fragment::FragData> generate_sub_fragment(AnnotatedFragData_exposer_callback {lvalue},unsigned long,unsigned long)
Overrides: FragData.generate_sub_fragment

is_applicable(...)

  

is_applicable( (AnnotatedFragData)arg1, (MoveMap), (Frame)) -> int :
    core/fragment/FragData.hh:82

    C++ signature :
        unsigned long is_applicable(core::fragment::AnnotatedFragData {lvalue},core::kinematics::MoveMap,core::fragment::Frame)

is_applicable( (AnnotatedFragData)arg1, (MoveMap), (Frame)) -> int :

    C++ signature :
        unsigned long is_applicable(AnnotatedFragData_exposer_callback {lvalue},core::kinematics::MoveMap,core::fragment::Frame)

is_applicable( (AnnotatedFragData)arg1, (MoveMap), (int)start, (int)end) -> int :
    core/fragment/FragData.hh:81

    C++ signature :
        unsigned long is_applicable(core::fragment::AnnotatedFragData {lvalue},core::kinematics::MoveMap,unsigned long,unsigned long)

is_applicable( (AnnotatedFragData)arg1, (MoveMap), (int)start, (int)end) -> int :

    C++ signature :
        unsigned long is_applicable(AnnotatedFragData_exposer_callback {lvalue},core::kinematics::MoveMap,unsigned long,unsigned long)
Overrides: FragData.is_applicable

pdbid(...)

  

pdbid( (AnnotatedFragData)arg1) -> str :
    core/fragment/FragData.hh:219

    C++ signature :
        std::string pdbid(core::fragment::AnnotatedFragData {lvalue})

pdbid( (AnnotatedFragData)arg1) -> str :

    C++ signature :
        std::string pdbid(AnnotatedFragData_exposer_callback {lvalue})
Overrides: FragData.pdbid

pdbpos(...)

  

pdbpos( (AnnotatedFragData)arg1) -> int :
    core/fragment/FragData.hh:223

    C++ signature :
        unsigned long pdbpos(core::fragment::AnnotatedFragData {lvalue})

pdbpos( (AnnotatedFragData)arg1) -> int :

    C++ signature :
        unsigned long pdbpos(AnnotatedFragData_exposer_callback {lvalue})
Overrides: FragData.pdbpos

show(...)

  

show( (AnnotatedFragData)arg1, (OStream)out) -> None :
    core/fragment/FragData.hh:148

    C++ signature :
        void show(core::fragment::AnnotatedFragData {lvalue},std::ostream {lvalue})

show( (AnnotatedFragData)arg1, (OStream)out) -> None :

    C++ signature :
        void show(AnnotatedFragData_exposer_callback {lvalue},std::ostream {lvalue})

show( (AnnotatedFragData)arg1, (OStream)out, (Frame)) -> None :
    core/fragment/FragData.hh:149

    C++ signature :
        void show(core::fragment::AnnotatedFragData {lvalue},std::ostream {lvalue},core::fragment::Frame)

show( (AnnotatedFragData)arg1, (OStream)out, (Frame)) -> None :

    C++ signature :
        void show(AnnotatedFragData_exposer_callback {lvalue},std::ostream {lvalue},core::fragment::Frame)
Overrides: FragData.show

show_classic(...)

  

show_classic( (AnnotatedFragData)arg1, (OStream)out) -> None :
    core/fragment/FragData.hh:150

    C++ signature :
        void show_classic(core::fragment::AnnotatedFragData {lvalue},std::ostream {lvalue})

show_classic( (AnnotatedFragData)arg1, (OStream)out) -> None :

    C++ signature :
        void show_classic(AnnotatedFragData_exposer_callback {lvalue},std::ostream {lvalue})
Overrides: FragData.show_classic

steal(...)

  

steal( (AnnotatedFragData)arg1, (Pose), (int)start, (int)end) -> bool :
    core/fragment/FragData.hh:85

    C++ signature :
        bool steal(core::fragment::AnnotatedFragData {lvalue},core::pose::Pose,unsigned long,unsigned long)

steal( (AnnotatedFragData)arg1, (Pose), (int)start, (int)end) -> bool :

    C++ signature :
        bool steal(AnnotatedFragData_exposer_callback {lvalue},core::pose::Pose,unsigned long,unsigned long)

steal( (AnnotatedFragData)arg1, (Pose), (Frame)) -> bool :
    core/fragment/FragData.hh:86

    C++ signature :
        bool steal(core::fragment::AnnotatedFragData {lvalue},core::pose::Pose,core::fragment::Frame)

steal( (AnnotatedFragData)arg1, (Pose), (Frame)) -> bool :

    C++ signature :
        bool steal(AnnotatedFragData_exposer_callback {lvalue},core::pose::Pose,core::fragment::Frame)
Overrides: FragData.steal

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