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T
T()
(in
rosetta.basic._basic_
)
test_move()
(in
TopologyBrokerMover
)
TotalSasaFilterCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
t_debug
(in
TracerPriority
)
test_move()
(in
TryRotamers
)
TotalSasaFilterCreator
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
t_debug
(in
rosetta.basic._basic_
)
test_move()
(in
VLB
)
TotalSasaFilterCreatorAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
t_debug
(in
rosetta.basic
)
test_move()
(in
AutoRBMover
)
TotalSasaFilterCreatorCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
t_error
(in
TracerPriority
)
test_move()
(in
FragInsertAndAlignMover
)
TotalScoreFeatures
(in
rosetta.protocols.features._protocols_features_
)
t_error
(in
rosetta.basic._basic_
)
test_move()
(in
GaussianRBSegmentMover
)
TotalScoreFeaturesAP
(in
rosetta.protocols.features._protocols_features_
)
t_error
(in
rosetta.basic
)
test_move()
(in
HelicalGaussianMover
)
TotalScoreFeaturesCAP
(in
rosetta.protocols.features._protocols_features_
)
t_fatal
(in
TracerPriority
)
test_move()
(in
IdealizeHelicesMover
)
TotalScoreFeaturesCreator
(in
rosetta.protocols.features._protocols_features_
)
t_fatal
(in
rosetta.basic._basic_
)
test_move()
(in
MakeStarTopologyMover
)
TotalScoreFeaturesCreatorAP
(in
rosetta.protocols.features._protocols_features_
)
t_fatal
(in
rosetta.basic
)
test_move()
(in
OptimizeThreadingMover
)
TotalScoreFeaturesCreatorCAP
(in
rosetta.protocols.features._protocols_features_
)
t_info
(in
TracerPriority
)
test_move()
(in
RBSegmentMover
)
tournament_select()
(in
GeneticAlgorithm
)
t_info
(in
rosetta.basic._basic_
)
test_move()
(in
RBSegmentRelax
)
tournament_select()
(in
GeneticAlgorithmBase
)
t_info
(in
rosetta.basic
)
test_move()
(in
SequenceShiftMover
)
trace
(in
rosetta.core.scoring.packstat._core_scoring_packstat_
)
t_jump()
(in
SimulatedTempering
)
test_move()
(in
StrandTwistingMover
)
trace
(in
xyzMatrix_Real
)
t_trace
(in
TracerPriority
)
test_move()
(in
AtomCoordinateCstMover
)
trace
(in
xyzMatrix_SSize
)
t_trace
(in
rosetta.basic._basic_
)
test_move()
(in
CentroidRelax
)
trace
(in
xyzMatrix_Size
)
t_trace
(in
rosetta.basic
)
test_move()
(in
ClassicRelax
)
trace
(in
xyzMatrix_double
)
t_warning
(in
TracerPriority
)
test_move()
(in
FastRelax
)
trace
(in
xyzMatrix_float
)
t_warning
(in
rosetta.basic._basic_
)
test_move()
(in
LocalRelax
)
trace()
(in
RDAT
)
t_warning
(in
rosetta.basic
)
test_move()
(in
MiniRelax
)
trace()
(in
xyzMatrix_T_float_T
)
table_exists()
(in
rosetta.basic.database._basic_database_
)
test_move()
(in
RelaxProtocolBase
)
traceAP
(in
rosetta.core.scoring.packstat._core_scoring_packstat_
)
TableLookupEtableEnergy
(in
rosetta.core.scoring.etable._core_scoring_etable_
)
test_move()
(in
MPFastRelaxMover
)
traceback()
(in
Aligner
)
TableLookupEtableEnergyAP
(in
rosetta.core.scoring.etable._core_scoring_etable_
)
test_move()
(in
MembraneCenterPerturbationMover
)
traceCAP
(in
rosetta.core.scoring.packstat._core_scoring_packstat_
)
TableLookupEtableEnergyCAP
(in
rosetta.core.scoring.etable._core_scoring_etable_
)
test_move()
(in
MembraneNormalPerturbationMover
)
traced_dump_pdb()
(in
rosetta.core.io.pdb._core_io_pdb_
)
TableLookupEvaluator
(in
rosetta.core.scoring.etable._core_scoring_etable_
)
test_move()
(in
MovePoseToMembraneCenterMover
)
Tracer
(in
rosetta.basic._basic_
)
TableLookupEvaluatorAP
(in
rosetta.core.scoring.etable._core_scoring_etable_
)
test_move()
(in
RigidBodyDeterministicSpinMover
)
tracer()
(in
JSON_RPC
)
TableLookupEvaluatorCAP
(in
rosetta.core.scoring.etable._core_scoring_etable_
)
test_move()
(in
RigidBodyDofPerturbMover
)
tracer_options()
(in
Tracer
)
TabooSamplingKinematicPerturber
(in
rosetta.protocols.loops.loop_closure.kinematic_closure._protocols_loops_loop_closure_kinematic_closure_
)
test_move()
(in
RigidBodyDofRandomTransMover
)
TracerAP
(in
rosetta.basic._basic_
)
TabooSamplingKinematicPerturberAP
(in
rosetta.protocols.loops.loop_closure.kinematic_closure._protocols_loops_loop_closure_kinematic_closure_
)
test_move()
(in
RigidBodyDofRandomizeMover
)
TracerCAP
(in
rosetta.basic._basic_
)
TabooSamplingKinematicPerturberCAP
(in
rosetta.protocols.loops.loop_closure.kinematic_closure._protocols_loops_loop_closure_kinematic_closure_
)
test_move()
(in
RigidBodyDofSeqPerturbMover
)
TracerManager
(in
rosetta.basic._basic_
)
tabulate()
(in
FormFactor
)
test_move()
(in
RigidBodyDofSeqRandomizeMover
)
TracerManagerAP
(in
rosetta.basic._basic_
)
tabulate()
(in
FormFactorManager
)
test_move()
(in
RigidBodyDofSeqTransMover
)
TracerManagerCAP
(in
rosetta.basic._basic_
)
Tag
(in
ConnectionEvent
)
test_move()
(in
RigidBodyDofTransMover
)
TracerOptions
(in
rosetta.basic._basic_
)
Tag
(in
IdentityEvent
)
test_move()
(in
RigidBodyMotionMover
)
TracerOptionsAP
(in
rosetta.basic._basic_
)
Tag
(in
LengthEvent
)
test_move()
(in
RigidBodyMover
)
TracerOptionsCAP
(in
rosetta.basic._basic_
)
tag
(in
rosetta.utility
)
test_move()
(in
RigidBodyPerturbMover
)
TracerPriority
(in
rosetta.basic._basic_
)
Tag
(in
rosetta.utility.tag._utility_tag_
)
test_move()
(in
RigidBodyPerturbNoCenterMover
)
TracerToFile
(in
rosetta.basic._basic_
)
tag()
(in
ResPairMotif
)
test_move()
(in
RigidBodyPerturbRandomJumpMover
)
TracerToFileAP
(in
rosetta.basic._basic_
)
tag()
(in
RocPoint
)
test_move()
(in
RigidBodyRandomizeMover
)
TracerToFileCAP
(in
rosetta.basic._basic_
)
tag()
(in
AlignEvaluator
)
test_move()
(in
RigidBodySpinMover
)
train()
(in
CircularSplineFunc
)
tag()
(in
OptEPositionData
)
test_move()
(in
RigidBodyTransMover
)
train()
(in
BicubicSpline
)
tag()
(in
SingleStructureData
)
test_move()
(in
RollMover
)
train()
(in
CubicSpline
)
tag()
(in
TagDefinition
)
test_move()
(in
RotateJumpAxisMover
)
train()
(in
PolycubicSpline
)
tag()
(in
GeomSampleInfo
)
test_move()
(in
UniformRigidBodyCM
)
train()
(in
TricubicSpline
)
TAG_DEFINITION
(in
rosetta.protocols.stepwise.screener
)
test_move()
(in
UniformRigidBodyMover
)
traits()
(in
Entity
)
TAG_DEFINITION
(in
StepWiseScreenerType
)
test_move()
(in
UniformSphereTransMover
)
traits_string()
(in
Entity
)
TAG_DEFINITION
(in
rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
)
test_move()
(in
WholeBodyRotationMover
)
trajectory
(in
rosetta.protocols
)
tag_format_string()
(in
SilentFileOutputter
)
test_move()
(in
WholeBodyTranslationMover
)
trajectory_file_name()
(in
FixbbSimAnnealer
)
tag_from_pdb_fname()
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
test_move()
(in
AdditionalOutputWrapper
)
trajectory_idx()
(in
WorkUnit
)
tag_from_pose()
(in
rosetta.core.pose._core_pose_
)
test_move()
(in
MultipleOutputWrapper
)
TrajectoryMapFeatures
(in
rosetta.protocols.features._protocols_features_
)
tag_into_pose()
(in
rosetta.core.pose._core_pose_
)
test_move()
(in
MultiplePoseMover
)
TrajectoryMapFeaturesAP
(in
rosetta.protocols.features._protocols_features_
)
tag_time()
(in
DumpPdb
)
test_move()
(in
ParsedProtocol
)
TrajectoryMapFeaturesCAP
(in
rosetta.protocols.features._protocols_features_
)
TagAP
(in
rosetta.utility.tag._utility_tag_
)
test_move()
(in
SavePoseMover
)
TrajectoryMapFeaturesCreator
(in
rosetta.protocols.features._protocols_features_
)
TagCAP
(in
rosetta.utility.tag._utility_tag_
)
test_move()
(in
RotamerRecoveryMover
)
TrajectoryMapFeaturesCreatorAP
(in
rosetta.protocols.features._protocols_features_
)
TagDefinition
(in
rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
)
test_move()
(in
CAcstGenerator
)
TrajectoryMapFeaturesCreatorCAP
(in
rosetta.protocols.features._protocols_features_
)
TagDefinitionAP
(in
rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
)
test_move()
(in
CloseFold
)
TrajectoryRecorder
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
TagDefinitionCAP
(in
rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
)
test_move()
(in
CoordinateCst
)
TrajectoryRecorderAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
TagPoseWithRefinementStatsMover
(in
rosetta.protocols.cryst._protocols_cryst_
)
test_move()
(in
DefineMovableLoops
)
TrajectoryRecorderCAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
TagPoseWithRefinementStatsMoverAP
(in
rosetta.protocols.cryst._protocols_cryst_
)
test_move()
(in
GrowPeptides
)
TrajectoryReportToDB
(in
rosetta.protocols.features._protocols_features_
)
TagPoseWithRefinementStatsMoverCAP
(in
rosetta.protocols.cryst._protocols_cryst_
)
test_move()
(in
SeedFoldTree
)
TrajectoryReportToDBAP
(in
rosetta.protocols.features._protocols_features_
)
TagPoseWithRefinementStatsMoverCreator
(in
rosetta.protocols.cryst._protocols_cryst_
)
test_move()
(in
SeedSetupMover
)
TrajectoryReportToDBCAP
(in
rosetta.protocols.features._protocols_features_
)
TagPoseWithRefinementStatsMoverCreatorAP
(in
rosetta.protocols.cryst._protocols_cryst_
)
test_move()
(in
SegmentHybridizer
)
TrajectoryReportToDBCreator
(in
rosetta.protocols.features._protocols_features_
)
TagPoseWithRefinementStatsMoverCreatorCAP
(in
rosetta.protocols.cryst._protocols_cryst_
)
test_move()
(in
SwapSegment
)
TrajectoryReportToDBCreatorAP
(in
rosetta.protocols.features._protocols_features_
)
tags()
(in
SilentFilePoseInputStream
)
test_move()
(in
EvaluatedTrialMover
)
TrajectoryReportToDBCreatorCAP
(in
rosetta.protocols.features._protocols_features_
)
tags()
(in
SilentFileData
)
test_move()
(in
AddCavitiesMover
)
trans_axis()
(in
RigidBodyDofRandomTransMover
)
tags()
(in
TrialCounter
)
test_move()
(in
AddChainMover
)
trans_axis()
(in
RigidBodyDofSeqTransMover
)
tail()
(in
LoopLengthChange
)
test_move()
(in
AddConstraintsToCurrentConformationMover
)
trans_axis()
(in
RigidBodyDofTransMover
)
tail_residue_name()
(in
MakeBundleHelix
)
test_move()
(in
AddJobPairData
)
trans_axis()
(in
RigidBodyTransMover
)
TailsScoreMover
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
test_move()
(in
AlignChainMover
)
TRANS_GG
(in
rosetta
)
TailsScoreMoverAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
test_move()
(in
BBConRotMover
)
TRANS_GG
(in
rosetta.core.scoring
)
TailsScoreMoverCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
test_move()
(in
BBG8T3AMover
)
TRANS_GG
(in
Rama2BOffsetTables
)
take_coordinates_from_pose()
(in
BB_Pos
)
test_move()
(in
BBGaussianMover
)
TRANS_GG
(in
rosetta.core.scoring._core_scoring_
)
take_coordinates_from_pose()
(in
BB_Pos
)
test_move()
(in
BackboneMover
)
TRANS_GP
(in
rosetta
)
take_out_cutpoints()
(in
TransientCutpointHandler
)
test_move()
(in
BoltzmannRotamerMover
)
TRANS_GP
(in
rosetta.core.scoring
)
takeoff_atom()
(in
LoopScoreInfo
)
test_move()
(in
ChainSplitMover
)
TRANS_GP
(in
Rama2BOffsetTables
)
takeoff_domain()
(in
Loop
)
test_move()
(in
ChangeAndResetFoldTreeMover
)
TRANS_GP
(in
rosetta.core.scoring._core_scoring_
)
takeoff_pos()
(in
Loop
)
test_move()
(in
ClearConstraintsMover
)
TRANS_GV
(in
rosetta
)
TalosSSSimilarity
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
test_move()
(in
CombinePoseMover
)
TRANS_GV
(in
rosetta.core.scoring
)
TalosSSSimilarityAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
test_move()
(in
ConsensusDesignMover
)
TRANS_GV
(in
Rama2BOffsetTables
)
TalosSSSimilarityCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
test_move()
(in
ConstrainToIdealMover
)
TRANS_GV
(in
rosetta.core.scoring._core_scoring_
)
targ_ang()
(in
ResidueVicinityInfo
)
test_move()
(in
ConstraintSetMover
)
TRANS_GX
(in
rosetta
)
targ_ang()
(in
ResInteractions
)
test_move()
(in
ContingentAcceptMover
)
TRANS_GX
(in
rosetta.core.scoring
)
targ_atom_names()
(in
ResInteractions
)
test_move()
(in
CopyDofMover
)
TRANS_GX
(in
Rama2BOffsetTables
)
targ_base2_atom_names()
(in
ResInteractions
)
test_move()
(in
CoupledMover
)
TRANS_GX
(in
rosetta.core.scoring._core_scoring_
)
targ_base_atom_names()
(in
ResInteractions
)
test_move()
(in
CutChainMover
)
trans_magnitude()
(in
RigidBodyDofPerturbMover
)
targ_dih()
(in
ResidueVicinityInfo
)
test_move()
(in
CyclizationMover
)
trans_magnitude()
(in
RigidBodyDofSeqPerturbMover
)
targ_dih()
(in
ResInteractions
)
test_move()
(in
DME_FilterMover
)
trans_magnitude()
(in
RigidBodyPerturbMover
)
targ_res()
(in
ResInteractions
)
test_move()
(in
DeleteChainsMover
)
trans_magnitude()
(in
RigidBodyPerturbNoCenterMover
)
TARGET
(in
rosetta.core.pack.task._core_pack_task_
)
test_move()
(in
DesignRepackMover
)
trans_omega()
(in
rosetta.protocols.forge.methods._protocols_forge_methods_
)
target()
(in
MutateResidue
)
test_move()
(in
DisulfideInsertionMover
)
TRANS_PG
(in
rosetta
)
target_chain()
(in
AlignChainMover
)
test_move()
(in
DumpPdb
)
TRANS_PG
(in
rosetta.core.scoring
)
target_conformer()
(in
MotifHit
)
test_move()
(in
EnergyCutRotamerTrialsMinMover
)
TRANS_PG
(in
Rama2BOffsetTables
)
target_conformers_map()
(in
LigandMotifSearch
)
test_move()
(in
EnergyCutRotamerTrialsMover
)
TRANS_PG
(in
rosetta.core.scoring._core_scoring_
)
target_conformers_map()
(in
MotifSearch
)
test_move()
(in
ExtendedPoseMover
)
trans_pose()
(in
rosetta.protocols.sic_dock._protocols_sic_dock_
)
target_downstream_res()
(in
EnzConstraintIO
)
test_move()
(in
FavorSequenceProfile
)
TRANS_PP
(in
rosetta
)
target_pose_start()
(in
ReplaceRegionMover
)
test_move()
(in
FavorSymmetricSequence
)
TRANS_PP
(in
rosetta.core.scoring
)
target_positions()
(in
BuildPosition
)
test_move()
(in
FindConsensusSequence
)
TRANS_PP
(in
Rama2BOffsetTables
)
target_positions()
(in
LigandMotifSearch
)
test_move()
(in
ForceDisulfidesMover
)
TRANS_PP
(in
rosetta.core.scoring._core_scoring_
)
target_positions()
(in
MotifSearch
)
test_move()
(in
GenericMonteCarloMover
)
TRANS_PV
(in
rosetta
)
target_region()
(in
DomainInterfaceFilter
)
test_move()
(in
GreenPacker
)
TRANS_PV
(in
rosetta.core.scoring
)
target_region_string()
(in
DomainInterfaceFilter
)
test_move()
(in
LoadPDBMover
)
TRANS_PV
(in
Rama2BOffsetTables
)
target_res()
(in
PocketConstraint
)
test_move()
(in
LoadUnboundRotMover
)
TRANS_PV
(in
rosetta.core.scoring._core_scoring_
)
target_res_for_geom_cst()
(in
InvrotTarget
)
test_move()
(in
MSDMover
)
TRANS_PX
(in
rosetta
)
target_sequence()
(in
Templates
)
test_move()
(in
MakePolyXMover
)
TRANS_PX
(in
rosetta.core.scoring
)
target_sequence()
(in
DatabaseThread
)
test_move()
(in
MembraneTopology
)
TRANS_PX
(in
Rama2BOffsetTables
)
target_sequence()
(in
ThreadSequenceOperation
)
test_move()
(in
MinMover
)
TRANS_PX
(in
rosetta.core.scoring._core_scoring_
)
target_total_residue()
(in
Templates
)
test_move()
(in
MinPackMover
)
TRANS_VG
(in
rosetta
)
target_type()
(in
PackerTask_
)
test_move()
(in
MissingDensityToJumpMover
)
TRANS_VG
(in
rosetta.core.scoring
)
target_type()
(in
ResidueLevelTask
)
test_move()
(in
ModifyVariantTypeMover
)
TRANS_VG
(in
Rama2BOffsetTables
)
target_type()
(in
ResidueLevelTask_
)
test_move()
(in
MonteCarloRecover
)
TRANS_VG
(in
rosetta.core.scoring._core_scoring_
)
TARGETAP
(in
rosetta.core.pack.task._core_pack_task_
)
test_move()
(in
MonteCarloReset
)
TRANS_VP
(in
rosetta
)
TARGETCAP
(in
rosetta.core.pack.task._core_pack_task_
)
test_move()
(in
MonteCarloTest
)
TRANS_VP
(in
rosetta.core.scoring
)
targeted_dna()
(in
DesignProteinBackboneAroundDNA
)
test_move()
(in
MutateResidue
)
TRANS_VP
(in
Rama2BOffsetTables
)
targeted_dna()
(in
DnaInterfacePacker
)
test_move()
(in
O2M_MutateMover
)
TRANS_VP
(in
rosetta.core.scoring._core_scoring_
)
targeted_dna()
(in
RestrictDesignToProteinDNAInterface
)
test_move()
(in
PDBReloadMover
)
TRANS_VV
(in
rosetta
)
TargetPocketGrid
(in
rosetta.protocols.pockets._protocols_pockets_
)
test_move()
(in
PSSM2BfactorMover
)
TRANS_VV
(in
rosetta.core.scoring
)
TargetPocketGridAP
(in
rosetta.protocols.pockets._protocols_pockets_
)
test_move()
(in
PackRotamersMover
)
TRANS_VV
(in
Rama2BOffsetTables
)
TargetPocketGridCAP
(in
rosetta.protocols.pockets._protocols_pockets_
)
test_move()
(in
PackRotamersMoverLazy
)
TRANS_VV
(in
rosetta.core.scoring._core_scoring_
)
targetPocketHeuristicScore()
(in
PocketGrid
)
test_move()
(in
PeptideStapleMover
)
TRANS_VX
(in
rosetta
)
targetPocketHydrophobicProteinSurface()
(in
PocketGrid
)
test_move()
(in
PeriodicBoxMover
)
TRANS_VX
(in
rosetta.core.scoring
)
targetPocketPolarProteinSurface()
(in
PocketGrid
)
test_move()
(in
ProlineFixMover
)
TRANS_VX
(in
Rama2BOffsetTables
)
targetPocketProteinSurface()
(in
PocketGrid
)
test_move()
(in
RandomOmegaFlipMover
)
TRANS_VX
(in
rosetta.core.scoring._core_scoring_
)
targetPocketSolventSurface()
(in
PocketGrid
)
test_move()
(in
RandomTorsionMover
)
TRANS_XG
(in
rosetta
)
targetPocketVolume()
(in
PocketGrid
)
test_move()
(in
RepackSidechainsMover
)
TRANS_XG
(in
rosetta.core.scoring
)
TargetRotamerCoords
(in
rosetta.protocols.match.downstream._protocols_match_downstream_
)
test_move()
(in
RepeatPropagationMover
)
TRANS_XG
(in
Rama2BOffsetTables
)
TargetRotamerCoordsAP
(in
rosetta.protocols.match.downstream._protocols_match_downstream_
)
test_move()
(in
ReportEffectivePKA
)
TRANS_XG
(in
rosetta.core.scoring._core_scoring_
)
TargetRotamerCoordsCAP
(in
rosetta.protocols.match.downstream._protocols_match_downstream_
)
test_move()
(in
RepulsiveOnlyMover
)
TRANS_XP
(in
rosetta
)
task
(in
rosetta.core.pack
)
test_move()
(in
ResetBaselineMover
)
TRANS_XP
(in
rosetta.core.scoring
)
task()
(in
RotamerSets
)
test_move()
(in
ResidueTypeConstraintMover
)
TRANS_XP
(in
Rama2BOffsetTables
)
task()
(in
PackDaemon
)
test_move()
(in
ReturnSidechainMover
)
TRANS_XP
(in
rosetta.core.scoring._core_scoring_
)
task()
(in
DesignRepackMover
)
test_move()
(in
RingConformationMover
)
TRANS_XV
(in
rosetta
)
task()
(in
MinPackMover
)
test_move()
(in
RotamerTrialsMinMover
)
TRANS_XV
(in
rosetta.core.scoring
)
task()
(in
PackRotamersMover
)
test_move()
(in
RotamerTrialsMover
)
TRANS_XV
(in
Rama2BOffsetTables
)
task()
(in
RotamerizeMover
)
test_move()
(in
RotamerizeMover
)
TRANS_XV
(in
rosetta.core.scoring._core_scoring_
)
task()
(in
SidechainMover
)
test_move()
(in
SaneMinMover
)
TRANS_XX
(in
rosetta
)
task()
(in
SidechainMoverBase
)
test_move()
(in
ScoreMover
)
TRANS_XX
(in
rosetta.core.scoring
)
task_begin()
(in
StoreCompoundTaskMover
)
test_move()
(in
SequenceProfileMover
)
TRANS_XX
(in
Rama2BOffsetTables
)
task_clear()
(in
StoreCompoundTaskMover
)
test_move()
(in
SetReturningPackRotamersMover
)
TRANS_XX
(in
rosetta.core.scoring._core_scoring_
)
task_end()
(in
StoreCompoundTaskMover
)
test_move()
(in
SetTorsion
)
transaction_mode_from_name()
(in
rosetta.utility.sql_database._utility_sql_database_
)
task_factory()
(in
BackrubSidechainMover
)
test_move()
(in
ShakeStructureMover
)
TransactionMode
(in
rosetta.utility.sql_database._utility_sql_database_
)
task_factory()
(in
GreedyOptMutationMover
)
test_move()
(in
ShearMover
)
TransactionModeAP
(in
rosetta.utility.sql_database._utility_sql_database_
)
task_factory()
(in
ParetoOptMutationMover
)
test_move()
(in
ShortBackrubMover
)
TransactionModeCAP
(in
rosetta.utility.sql_database._utility_sql_database_
)
task_factory()
(in
PointMutationCalculator
)
test_move()
(in
SmallMover
)
TRANSFER
(in
ConnectionEvent
)
task_factory()
(in
DockingHighRes
)
test_move()
(in
SuperimposeMover
)
TRANSFER
(in
Tag
)
task_factory()
(in
DockingProtocol
)
test_move()
(in
SwitchChainOrderMover
)
transfer_constraint_set()
(in
Pose
)
task_factory()
(in
BackboneTorsionPerturbation
)
test_move()
(in
SwitchResidueTypeSetMover
)
transfer_jumps()
(in
rosetta.core.pose._core_pose_
)
task_factory()
(in
BackboneTorsionSampler
)
test_move()
(in
TailsScoreMover
)
transfer_jumps()
(in
JumpSample
)
task_factory()
(in
LoopRefineInnerCycle
)
test_move()
(in
TaskAwareMinMover
)
transfer_phi_psi()
(in
rosetta.core.pose._core_pose_
)
task_factory()
(in
ClashCheckFilter
)
test_move()
(in
TorsionDOFMover
)
Transform
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
task_factory()
(in
MatDesGreedyOptMutationMover
)
test_move()
(in
TorsionSetMover
)
transform()
(in
UltraLightResidue
)
task_factory()
(in
MatDesPointMutationCalculator
)
test_move()
(in
Tumble
)
transform()
(in
SearchPatternTransform
)
task_factory()
(in
OligomericAverageDegreeFilter
)
test_move()
(in
UniformRotationMover
)
transform()
(in
TMalign
)
task_factory()
(in
IterativeOptEDriver
)
test_move()
(in
UniformTranslationMover
)
transform()
(in
ExternalGeomSampler
)
task_factory()
(in
AverageDegreeFilter
)
test_move()
(in
VirtualRootMover
)
transform_Ax_plus_b_recursive()
(in
Atom
)
task_factory()
(in
BindingStrainFilter
)
test_move()
(in
ddG
)
Transform_info
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
task_factory()
(in
DesignableResiduesFilter
)
test_move()
(in
AsymFoldandDockMoveRbJumpMover
)
Transform_infoAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
task_factory()
(in
FilterScanFilter
)
test_move()
(in
AsymFoldandDockRbTrialMover
)
Transform_infoCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
task_factory()
(in
SequenceRecoveryFilter
)
test_move()
(in
InitializeByBins
)
transform_moving_partition_to_origin()
(in
rosetta.protocols.toolbox.rigid_body._protocols_toolbox_rigid_body_
)
task_factory()
(in
SpecificResiduesNearInterfaceFilter
)
test_move()
(in
PerturbByBins
)
transform_percentile()
(in
rosetta.numeric.kdtree._numeric_kdtree_
)
task_factory()
(in
Torsion
)
test_move()
(in
ChiralMover
)
transform_percentile_single_pt()
(in
rosetta.numeric.kdtree._numeric_kdtree_
)
task_factory()
(in
RandomMutation
)
test_move()
(in
HbsPatcher
)
transform_pose()
(in
PatchdockReader
)
task_factory()
(in
TaskAwareCsts
)
test_move()
(in
OopDPuckMinusMover
)
transform_sequence_to_mutation_set()
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
task_factory()
(in
SeedSetupMover
)
test_move()
(in
OopDPuckPlusMover
)
TransformAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
task_factory()
(in
BuriedUnsatHbondFilter
)
test_move()
(in
OopMover
)
Transformation
(in
rosetta.protocols.protein_interface_design._protocols_protein_interface_design_
)
task_factory()
(in
DdGScan
)
test_move()
(in
OopPatcher
)
TransformationAP
(in
rosetta.protocols.protein_interface_design._protocols_protein_interface_design_
)
task_factory()
(in
DdgFilter
)
test_move()
(in
OopPuckMinusMover
)
TransformationCAP
(in
rosetta.protocols.protein_interface_design._protocols_protein_interface_design_
)
task_factory()
(in
MutationsFilter
)
test_move()
(in
OopPuckPlusMover
)
TransformCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
task_factory()
(in
NetChargeFilter
)
test_move()
(in
OopRandomPuckMover
)
TransformCreator
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
task_factory()
(in
ResidueBurialFilter
)
test_move()
(in
OopRandomSmallMover
)
TransformCreatorAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
task_factory()
(in
ResidueCountFilter
)
test_move()
(in
RationalMonteCarlo
)
TransformCreatorCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
task_factory()
(in
RotamerBoltzmannWeight
)
test_move()
(in
JumpRotamerSidechainMover
)
TransformIntoMembraneMover
(in
rosetta.protocols.membrane._protocols_membrane_
)
task_factory()
(in
SaveResfileToDiskFilter
)
test_move()
(in
PerturbChiSidechainMover
)
TransformIntoMembraneMoverAP
(in
rosetta.protocols.membrane._protocols_membrane_
)
task_factory()
(in
TaskAwareSASAFilter
)
test_move()
(in
PerturbRotamerSidechainMover
)
TransformIntoMembraneMoverCAP
(in
rosetta.protocols.membrane._protocols_membrane_
)
task_factory()
(in
TaskAwareScoreTypeFilter
)
test_move()
(in
SetChiMover
)
TransformIntoMembraneMoverCreator
(in
rosetta.protocols.membrane._protocols_membrane_
)
task_factory()
(in
TotalSasaFilter
)
test_move()
(in
SidechainMCMover
)
TransformIntoMembraneMoverCreatorAP
(in
rosetta.protocols.membrane._protocols_membrane_
)
task_factory()
(in
AddConstraintsToCurrentConformationMover
)
test_move()
(in
SidechainMover
)
TransformIntoMembraneMoverCreatorCAP
(in
rosetta.protocols.membrane._protocols_membrane_
)
task_factory()
(in
DesignRepackMover
)
test_move()
(in
SidechainMoverBase
)
transforms_uptodate()
(in
ExternalGeomSampler
)
task_factory()
(in
FindConsensusSequence
)
test_move()
(in
DetectSymmetry
)
TransientCutpointHandler
(in
rosetta.protocols.stepwise.monte_carlo.mover._protocols_stepwise_monte_carlo_mover_
)
task_factory()
(in
GenericMonteCarloMover
)
test_move()
(in
ExtractAsymmetricPoseMover
)
TransientCutpointHandlerAP
(in
rosetta.protocols.stepwise.monte_carlo.mover._protocols_stepwise_monte_carlo_mover_
)
task_factory()
(in
MinPackMover
)
test_move()
(in
ExtractAsymmetricUnitMover
)
TransientCutpointHandlerCAP
(in
rosetta.protocols.stepwise.monte_carlo.mover._protocols_stepwise_monte_carlo_mover_
)
task_factory()
(in
PackRotamersMover
)
test_move()
(in
FaSymDockingSlideTogether
)
transition_threshold()
(in
CanonicalSamplingMover
)
task_factory()
(in
ReportEffectivePKA
)
test_move()
(in
SetupForSymmetryMover
)
transitive_map()
(in
rosetta.core.sequence._core_sequence_
)
task_factory()
(in
RotamerTrialsMinMover
)
test_move()
(in
SetupNCSMover
)
Translate
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
task_factory()
(in
RotamerTrialsMover
)
test_move()
(in
SymDockingInitialPerturbation
)
translate()
(in
rosetta.protocols.toolbox.rigid_body._protocols_toolbox_rigid_body_
)
task_factory()
(in
RotamerizeMover
)
test_move()
(in
SymDockingSlideIntoContact
)
translate_and_rotate_residue_to_origin()
(in
rosetta.protocols.toolbox.rigid_body._protocols_toolbox_rigid_body_
)
task_factory()
(in
ddG
)
test_move()
(in
SymEnergyCutRotamerTrialsMover
)
translate_by()
(in
EmbeddingDef
)
task_factory()
(in
SidechainMover
)
test_move()
(in
SymMinMover
)
translate_by()
(in
DdgFilter
)
task_factory()
(in
SidechainMoverBase
)
test_move()
(in
SymPackRotamersMover
)
translate_by()
(in
ddG
)
task_factory()
(in
SymDockProtocol
)
test_move()
(in
SymRotamerTrialsMover
)
Translate_info
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
task_factory()
(in
SymDockingHiRes
)
test_move()
(in
SymShakeStructureMover
)
Translate_infoAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
task_factory_set()
(in
Torsion
)
test_move()
(in
SymmetricRMSMover
)
Translate_infoCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
task_initialized()
(in
SidechainMover
)
test_move()
(in
TaskAwareSymMinMover
)
translate_virt_to_CoM()
(in
FoldTreeHybridize
)
task_is_valid()
(in
MinPackMover
)
test_move()
(in
StepWiseProteinMinimizer
)
translate_virtual_anchor_to_first_rigid_body()
(in
rosetta.protocols.farna._protocols_farna_
)
task_is_valid()
(in
PackRotamersMover
)
test_move()
(in
StepWiseProteinPoseSetup
)
TranslateAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
task_is_valid()
(in
RotamerizeMover
)
test_move()
(in
StepWiseRNA_PoseSetup
)
TranslateCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
task_name()
(in
StoreCompoundTaskMover
)
test_move()
(in
StepWiseConnectionSampler
)
TranslateCreator
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
task_operations
(in
rosetta.protocols.antibody
)
test_move()
(in
StepWiseMinimizer
)
TranslateCreatorAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
task_operations
(in
rosetta.protocols.toolbox
)
test_move()
(in
StepWiseModeler
)
TranslateCreatorCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
task_scaling()
(in
GenericMonteCarloMover
)
test_move()
(in
SideChainCopier
)
translation()
(in
xyzStripeHash
)
task_string()
(in
PackerTask
)
test_move()
(in
StepWisePacker
)
translation()
(in
xyzStripeHashWithMeta_T_float_T
)
task_string()
(in
PackerTask_
)
test_move()
(in
PolarHydrogenPacker
)
translation()
(in
SeparateDnaFromNonDna
)
TaskAwareCsts
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
test_move()
(in
PrecomputedLibraryMover
)
translation()
(in
RigidSearchMover
)
TaskAwareCstsAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
test_move()
(in
StepWiseProteinBackboneSampler
)
translation_along_axis()
(in
Jump
)
TaskAwareCstsCAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
test_move()
(in
StepWiseProteinCCD_Closer
)
translation_real()
(in
xyzStripeHash
)
TaskAwareCstsCreator
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
test_move()
(in
StepWiseProteinCCD_MultiPoseCloser
)
TranslationMover
(in
rosetta.protocols.membrane._protocols_membrane_
)
TaskAwareCstsCreatorAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
test_move()
(in
StepWiseProteinKIC_LoopBridger
)
TranslationMoverAP
(in
rosetta.protocols.membrane._protocols_membrane_
)
TaskAwareCstsCreatorCAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
test_move()
(in
BulgeApplyMover
)
TranslationMoverCAP
(in
rosetta.protocols.membrane._protocols_membrane_
)
TaskAwareMinMover
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
test_move()
(in
BulgeUnApplyMover
)
TranslationMoverCreator
(in
rosetta.protocols.membrane._protocols_membrane_
)
TaskAwareMinMoverAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
test_move()
(in
RNA_ChainClosureChecker
)
TranslationMoverCreatorAP
(in
rosetta.protocols.membrane._protocols_membrane_
)
TaskAwareMinMoverCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
test_move()
(in
RNA_HelixAssembler
)
TranslationMoverCreatorCAP
(in
rosetta.protocols.membrane._protocols_membrane_
)
TaskAwareMinMoverCreator
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
test_move()
(in
O2PrimePacker
)
TranslationRotationMover
(in
rosetta.protocols.membrane._protocols_membrane_
)
TaskAwareMinMoverCreatorAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
test_move()
(in
MultiPhosphateSampler
)
TranslationRotationMoverAP
(in
rosetta.protocols.membrane._protocols_membrane_
)
TaskAwareMinMoverCreatorCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
test_move()
(in
PhosphateMover
)
TranslationRotationMoverCAP
(in
rosetta.protocols.membrane._protocols_membrane_
)
TaskAwareSASAFilter
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
test_move()
(in
SugarInstantiateMover
)
TranslationRotationMoverCreator
(in
rosetta.protocols.membrane._protocols_membrane_
)
TaskAwareSASAFilterAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
test_move()
(in
SugarVirtualizeMover
)
TranslationRotationMoverCreatorAP
(in
rosetta.protocols.membrane._protocols_membrane_
)
TaskAwareSASAFilterCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
test_move()
(in
VirtualSugarJustInTimeInstantiator
)
TranslationRotationMoverCreatorCAP
(in
rosetta.protocols.membrane._protocols_membrane_
)
TaskAwareSASAFilterCreator
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
test_move()
(in
VirtualSugarSampler
)
transpose()
(in
xyzMatrix_Real
)
TaskAwareSASAFilterCreatorAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
test_move()
(in
VirtualSugarSamplerFromStringList
)
transpose()
(in
xyzMatrix_SSize
)
TaskAwareSASAFilterCreatorCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
test_move()
(in
StepWiseMonteCarlo
)
transpose()
(in
xyzMatrix_Size
)
TaskAwareScoreTypeFilter
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
test_move()
(in
AddMover
)
transpose()
(in
xyzMatrix_T_float_T
)
TaskAwareScoreTypeFilterAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
test_move()
(in
AddOrDeleteMover
)
transpose()
(in
xyzMatrix_double
)
TaskAwareScoreTypeFilterCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
test_move()
(in
DeleteMover
)
transpose()
(in
xyzMatrix_float
)
TaskAwareScoreTypeFilterCreator
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
test_move()
(in
FromScratchMover
)
transpose_product()
(in
rosetta.numeric._numeric_
)
TaskAwareScoreTypeFilterCreatorAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
test_move()
(in
ResampleMover
)
transpose_so3()
(in
rosetta.numeric.fourier._numeric_fourier_
)
TaskAwareScoreTypeFilterCreatorCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
test_move()
(in
StepWiseMasterMover
)
transposed
(in
xyzMatrix_Real
)
TaskAwareSymMinMover
(in
rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
)
test_move()
(in
RNA_AddDeleteMonteCarlo
)
transposed
(in
xyzMatrix_SSize
)
TaskAwareSymMinMoverAP
(in
rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
)
test_move()
(in
RNA_O2PrimeMover
)
transposed
(in
xyzMatrix_Size
)
TaskAwareSymMinMoverCAP
(in
rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
)
test_move()
(in
RNA_TorsionMover
)
transposed
(in
xyzMatrix_double
)
TaskAwareSymMinMoverCreator
(in
rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
)
test_move()
(in
JumpStepWiseSampler
)
transposed
(in
xyzMatrix_float
)
TaskAwareSymMinMoverCreatorAP
(in
rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
)
test_move()
(in
MC_Comb
)
transposed()
(in
xyzMatrix_T_float_T
)
TaskAwareSymMinMoverCreatorCAP
(in
rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
)
test_move()
(in
MC_OneTorsion
)
transposeRowSize()
(in
SO3coeffs
)
TaskFactory
(in
rosetta.core.pack.task._core_pack_task_
)
test_move()
(in
NoOpStepWiseSampler
)
tree
(in
rosetta.core.kinematics
)
TaskFactoryAP
(in
rosetta.core.pack.task._core_pack_task_
)
test_move()
(in
StepWiseSamplerAny
)
tree()
(in
KDNode
)
TaskFactoryCAP
(in
rosetta.core.pack.task._core_pack_task_
)
test_move()
(in
StepWiseSamplerComb
)
tree_from_jumps_and_cuts()
(in
FoldTree
)
TaskOperation
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
test_move()
(in
StepWiseSamplerOneTorsion
)
tree_init()
(in
SixDCoordinateBinner
)
TaskOperationAP
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
test_move()
(in
StepWiseSamplerOneValue
)
triage_filter()
(in
FilterScanFilter
)
TaskOperationCAP
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
test_move()
(in
StepWiseSamplerOneValueComb
)
triage_threshold()
(in
BoltzmannFilter
)
TaskOperationCreator
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
test_move()
(in
StepWiseSamplerSized
)
trial()
(in
TrialCounter
)
TaskOperationCreatorAP
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
test_move()
(in
StepWiseSamplerSizedAny
)
trial_counter()
(in
ChunkTrialMover
)
TaskOperationCreatorCAP
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
test_move()
(in
StepWiseSamplerSizedComb
)
trial_counter()
(in
InsertChunkMover
)
TaskOperationFactory
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
test_move()
(in
CopyDofStepWiseSampler
)
trial_counter()
(in
GenericMonteCarloMover
)
TaskOperationFactoryAP
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
test_move()
(in
ResidueAlternativeStepWiseSampler
)
TrialCounter
(in
rosetta.protocols.moves._protocols_moves_
)
TaskOperationFactoryCAP
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
test_move()
(in
ResidueAlternativeStepWiseSamplerComb
)
TrialCounterAP
(in
rosetta.protocols.moves._protocols_moves_
)
TaskOperationFeatures
(in
rosetta.protocols.features._protocols_features_
)
test_move()
(in
ResidueListStepWiseSampler
)
TrialCounterCAP
(in
rosetta.protocols.moves._protocols_moves_
)
TaskOperationFeaturesAP
(in
rosetta.protocols.features._protocols_features_
)
test_move()
(in
InputStreamStepWiseSampler
)
TrialCounterObserver
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
TaskOperationFeaturesCAP
(in
rosetta.protocols.features._protocols_features_
)
test_move()
(in
ProteinBetaAntiParallelStepWiseSampler
)
TrialCounterObserverAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
TaskOperationFeaturesCreator
(in
rosetta.protocols.features._protocols_features_
)
test_move()
(in
ProteinFragmentStepWiseSampler
)
TrialCounterObserverCAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
TaskOperationFeaturesCreatorAP
(in
rosetta.protocols.features._protocols_features_
)
test_move()
(in
ProteinMainChainStepWiseSampler
)
TrialCounterObserverCreator
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
TaskOperationFeaturesCreatorCAP
(in
rosetta.protocols.features._protocols_features_
)
test_move()
(in
RigidBodyStepWiseSampler
)
TrialCounterObserverCreatorAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
TaskOperationLoader
(in
rosetta.protocols.jd2.parser._protocols_jd2_parser_
)
test_move()
(in
RigidBodyStepWiseSamplerWithResidueAlternatives
)
TrialCounterObserverCreatorCAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
TaskOperationLoaderAP
(in
rosetta.protocols.jd2.parser._protocols_jd2_parser_
)
test_move()
(in
RigidBodyStepWiseSamplerWithResidueList
)
TrialMover
(in
rosetta.protocols.moves._protocols_moves_
)
TaskOperationLoaderCAP
(in
rosetta.protocols.jd2.parser._protocols_jd2_parser_
)
test_move()
(in
RNA_ChiStepWiseSampler
)
TrialMoverAP
(in
rosetta.protocols.moves._protocols_moves_
)
TaskOperationLoaderCreator
(in
rosetta.protocols.jd2.parser._protocols_jd2_parser_
)
test_move()
(in
RNA_KIC_Sampler
)
TrialMoverCAP
(in
rosetta.protocols.moves._protocols_moves_
)
TaskOperationLoaderCreatorAP
(in
rosetta.protocols.jd2.parser._protocols_jd2_parser_
)
test_move()
(in
RNA_KinematicCloser
)
TRIAZOLEMER
(in
rosetta
)
TaskOperationLoaderCreatorCAP
(in
rosetta.protocols.jd2.parser._protocols_jd2_parser_
)
test_move()
(in
RNA_MC_MultiSuite
)
TRIAZOLEMER
(in
rosetta.core.chemical
)
TaskOperationMPM
(in
rosetta.protocols.match._protocols_match_
)
test_move()
(in
RNA_MC_Sugar
)
TRIAZOLEMER
(in
ResidueProperty
)
TaskOperationMPMAP
(in
rosetta.protocols.match._protocols_match_
)
test_move()
(in
RNA_MC_Suite
)
TRIAZOLEMER
(in
rosetta.core.chemical._core_chemical_
)
TaskOperationMPMCAP
(in
rosetta.protocols.match._protocols_match_
)
test_move()
(in
RNA_NucleosideStepWiseSampler
)
TricubicSpline
(in
rosetta.numeric.interpolation.spline._numeric_interpolation_spline_
)
TAUTOMER
(in
rosetta
)
test_move()
(in
RNA_SugarStepWiseSampler
)
TricubicSplineAP
(in
rosetta.numeric.interpolation.spline._numeric_interpolation_spline_
)
TAUTOMER
(in
rosetta.core.chemical
)
test_move()
(in
RNA_SuiteStepWiseSampler
)
TricubicSplineCAP
(in
rosetta.numeric.interpolation.spline._numeric_interpolation_spline_
)
TAUTOMER
(in
ResidueProperty
)
test_move()
(in
StepWiseCSA_JobDistributor
)
trie
(in
rosetta.core.scoring
)
TAUTOMER
(in
rosetta.core.chemical._core_chemical_
)
test_move()
(in
StepWiseJobDistributor
)
trie()
(in
TrieCollection
)
tell_neighbors_to_prep_for_relaxation()
(in
FASTERNode
)
test_move()
(in
StepWiseMonteCarloJobDistributor
)
trie_vs_path()
(in
AnalyticEtableEvaluator
)
temp()
(in
UnrecognizedAtomRecord
)
test_move()
(in
CentroidRelaxMover
)
trie_vs_path()
(in
TableLookupEvaluator
)
temp()
(in
SequenceCoupling
)
test_move()
(in
FullatomRelaxMover
)
trie_vs_path()
(in
RotamerTrieBase
)
temp()
(in
SequenceProfile
)
test_move()
(in
SurfaceDockingProtocol
)
trie_vs_trie()
(in
AnalyticEtableEvaluator
)
temp()
(in
TorsionDOFMover
)
test_move()
(in
SurfaceOrientMover
)
trie_vs_trie()
(in
TableLookupEvaluator
)
temp0()
(in
MDBase
)
test_move()
(in
SymDockBaseProtocol
)
trie_vs_trie()
(in
RotamerTrieBase
)
temp1()
(in
AtomNeighbor
)
test_move()
(in
SymDockProtocol
)
TrieCollection
(in
rosetta.core.scoring.trie._core_scoring_trie_
)
temp2()
(in
AtomNeighbor
)
test_move()
(in
SymDockingHiRes
)
TrieCollectionAP
(in
rosetta.core.scoring.trie._core_scoring_trie_
)
temp3()
(in
AtomNeighbor
)
test_move()
(in
SymDockingLowRes
)
TrieCollectionCAP
(in
rosetta.core.scoring.trie._core_scoring_trie_
)
temp4()
(in
AtomNeighbor
)
test_move()
(in
SymFoldandDockMoveRbJumpMover
)
TrieCountPair1BC3
(in
rosetta.core.scoring.etable.etrie._core_scoring_etable_etrie_
)
temp_file()
(in
BaseJobDistributor
)
test_move()
(in
SymFoldandDockRbTrialMover
)
TrieCountPair1BC3AP
(in
rosetta.core.scoring.etable.etrie._core_scoring_etable_etrie_
)
temp_file()
(in
PlainPdbJobDistributor
)
test_move()
(in
SymFoldandDockSlideTrialMover
)
TrieCountPair1BC3CAP
(in
rosetta.core.scoring.etable.etrie._core_scoring_etable_etrie_
)
temp_final()
(in
LoopMover_Refine_CCD
)
test_move()
(in
SymInterfaceSidechainMinMover
)
TrieCountPair1BC4
(in
rosetta.core.scoring.etable.etrie._core_scoring_etable_etrie_
)
temp_id()
(in
SimulatedTempering
)
test_move()
(in
SymSidechainMinMover
)
TrieCountPair1BC4AP
(in
rosetta.core.scoring.etable.etrie._core_scoring_etable_etrie_
)
temp_initial()
(in
LoopMover_Refine_CCD
)
test_move()
(in
MPSymDockMover
)
TrieCountPair1BC4CAP
(in
rosetta.core.scoring.etable.etrie._core_scoring_etable_etrie_
)
temperature()
(in
PDBInfo
)
test_move()
(in
AlignPoseToInvrotTreeMover
)
TrieCountPairAll
(in
rosetta.core.scoring.etable.etrie._core_scoring_etable_etrie_
)
temperature()
(in
FixedTemperatureController
)
test_move()
(in
StoreCombinedStoredTasksMover
)
TrieCountPairAllAP
(in
rosetta.core.scoring.etable.etrie._core_scoring_etable_etrie_
)
temperature()
(in
ParallelTempering
)
test_move()
(in
StoreCompoundTaskMover
)
TrieCountPairAllCAP
(in
rosetta.core.scoring.etable.etrie._core_scoring_etable_etrie_
)
temperature()
(in
SimulatedTempering
)
test_move()
(in
StoreTaskMover
)
TrieCountPairBase
(in
rosetta.core.scoring.trie._core_scoring_trie_
)
temperature()
(in
TemperatureController
)
test_move()
(in
UnfoldedStateEnergyCalculatorMover
)
TrieCountPairBaseAP
(in
rosetta.core.scoring.trie._core_scoring_trie_
)
temperature()
(in
TemperingBase
)
test_res_res_aln()
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
TrieCountPairBaseCAP
(in
rosetta.core.scoring.trie._core_scoring_trie_
)
temperature()
(in
RamaCheckBase
)
test_round()
(in
HierarchicalLevel
)
TrieCountPairGeneric
(in
rosetta.core.scoring.etable.etrie._core_scoring_etable_etrie_
)
temperature()
(in
MonteCarlo
)
test_saving_library()
(in
LoopHashLibrary
)
TrieCountPairGenericAP
(in
rosetta.core.scoring.etable.etrie._core_scoring_etable_etrie_
)
temperature()
(in
SimulatedTempering
)
testCartesianDerivatives()
(in
MolecularDynamics
)
TrieCountPairGenericCAP
(in
rosetta.core.scoring.etable.etrie._core_scoring_etable_etrie_
)
temperature()
(in
BoltzmannFilter
)
testMethod()
(in
DemoBase
)
TrieCountPairNone
(in
rosetta.core.scoring.etable.etrie._core_scoring_etable_etrie_
)
temperature()
(in
RotamerBoltzmannWeight
)
testMethod()
(in
DemoDerived
)
TrieCountPairNoneAP
(in
rosetta.core.scoring.etable.etrie._core_scoring_etable_etrie_
)
temperature()
(in
BackboneMover
)
testNeighbor()
(in
CCluster
)
TrieCountPairNoneCAP
(in
rosetta.core.scoring.etable.etrie._core_scoring_etable_etrie_
)
temperature()
(in
RationalMonteCarlo
)
testNeighbor()
(in
PCluster
)
tries()
(in
TorsionDOFMover
)
temperature()
(in
PerturbRotamerSidechainMover
)
TestPattern
(in
rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_
)
trigger_accept()
(in
SequenceShiftMover
)
temperature()
(in
SidechainMCMover
)
TestPatternAP
(in
rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_
)
trim()
(in
rosetta.utility._utility_
)
temperature()
(in
StepWiseMonteCarloOptions
)
TestPatternCAP
(in
rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_
)
trim_back_sequence_mapping()
(in
rosetta.protocols.loops._protocols_loops_
)
temperature_level()
(in
FixedTemperatureController
)
tether_jump()
(in
StepWiseRNA_ModelerOptions
)
trim_based_on_known_ligand()
(in
NonPlaidFingerprint
)
temperature_level()
(in
ParallelTempering
)
tether_jump()
(in
StepWiseMonteCarloOptions
)
trim_subbin_edges_and_rescale_subbin()
(in
BinTransitionData
)
temperature_level()
(in
SimulatedTempering
)
TetherLigand
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
TRIMETHYLATION
(in
rosetta
)
temperature_level()
(in
TemperatureController
)
TetherLigandAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
TRIMETHYLATION
(in
rosetta.core.chemical
)
temperature_level()
(in
TemperingBase
)
TetherLigandCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
TRIMETHYLATION
(in
rosetta.core.chemical._core_chemical_
)
temperature_move()
(in
FixedTemperatureController
)
then_expression()
(in
ITEExpression
)
TRIMETHYLATION
(in
VariantType
)
temperature_move()
(in
HamiltonianExchange
)
THEORETICAL_MODEL
(in
ExperimentalTechnique
)
trimFiberDiffractionData()
(in
FiberDiffraction
)
temperature_move()
(in
ParallelTempering
)
THEORETICAL_MODEL
(in
HeaderInformation
)
trimmed_compare()
(in
rosetta.utility._utility_
)
temperature_move()
(in
SimulatedTempering
)
TheozymeInvrotTree
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
Triple
(in
rosetta.basic.sampling.orientations._basic_sampling_orientations_
)
temperature_move()
(in
TemperatureController
)
TheozymeInvrotTreeAP
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
TripleAP
(in
rosetta.basic.sampling.orientations._basic_sampling_orientations_
)
temperature_move()
(in
TemperingBase
)
TheozymeInvrotTreeCAP
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
TripleBond
(in
rosetta
)
TemperatureController
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
ThermodynamicData
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
TripleBond
(in
rosetta.core.chemical
)
TemperatureControllerAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
ThermodynamicDataAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
TripleBond
(in
BondName
)
TemperatureControllerCAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
ThermodynamicDataCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
TripleBond
(in
rosetta.core.chemical._core_chemical_
)
temperatures()
(in
GenericMonteCarloMover
)
ThermodynamicMover
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
TripleBondOrder
(in
rosetta
)
TemperedDocking
(in
rosetta.protocols.docking._protocols_docking_
)
ThermodynamicMoverAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
TripleBondOrder
(in
rosetta.core.chemical
)
TemperedDockingAP
(in
rosetta.protocols.docking._protocols_docking_
)
ThermodynamicMoverCAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
TripleBondOrder
(in
BondOrder
)
TemperedDockingCAP
(in
rosetta.protocols.docking._protocols_docking_
)
ThermodynamicObserver
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
TripleBondOrder
(in
rosetta.core.chemical._core_chemical_
)
TemperedDockingCreator
(in
rosetta.protocols.docking._protocols_docking_
)
ThermodynamicObserverAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
TripleCAP
(in
rosetta.basic.sampling.orientations._basic_sampling_orientations_
)
TemperedDockingCreatorAP
(in
rosetta.protocols.docking._protocols_docking_
)
ThermodynamicObserverCAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
triplet_and_originnum
(in
rosetta.protocols.pockets._protocols_pockets_
)
TemperedDockingCreatorCAP
(in
rosetta.protocols.docking._protocols_docking_
)
Thermostat
(in
rosetta.protocols.md._protocols_md_
)
triplet_and_originnumAP
(in
rosetta.protocols.pockets._protocols_pockets_
)
tempering()
(in
MetropolisHastingsMover
)
ThermostatAP
(in
rosetta.protocols.md._protocols_md_
)
triplet_and_originnumCAP
(in
rosetta.protocols.pockets._protocols_pockets_
)
TemperingBase
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
ThermostatCAP
(in
rosetta.protocols.md._protocols_md_
)
triplet_fingerprint_data()
(in
FingerprintBase
)
TemperingBaseAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
THETA
(in
rosetta
)
TrisBpyScore
(in
rosetta.protocols.sic_dock.scores._protocols_sic_dock_scores_
)
TemperingBaseCAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
THETA
(in
rosetta.core.chemical
)
TrisBpyScoreAP
(in
rosetta.protocols.sic_dock.scores._protocols_sic_dock_scores_
)
templ()
(in
RigidChunkCM
)
THETA
(in
CPParameter
)
TrisBpyScoreCAP
(in
rosetta.protocols.sic_dock.scores._protocols_sic_dock_scores_
)
templ_selector()
(in
RigidChunkCM
)
THETA
(in
rosetta.core.chemical._core_chemical_
)
true_behavior()
(in
StoreCompoundTaskMover
)
templ_target()
(in
RigidChunkCM
)
THETA
(in
rosetta.core.id
)
true_negative
(in
RocStatus
)
Template
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
THETA
(in
DOF_Type
)
true_negative
(in
rosetta.numeric._numeric_
)
template_atom_inds()
(in
MatchConstraintFileInfo
)
THETA
(in
rosetta.core.id._core_id_
)
true_negative
(in
rosetta.numeric
)
template_file()
(in
DatabaseThread
)
theta()
(in
Adduct
)
true_positive
(in
RocStatus
)
TEMPLATE_HYBRIDIZATION_HISTORY
(in
Enum
)
theta()
(in
AtomICoor
)
true_positive
(in
rosetta.numeric._numeric_
)
TEMPLATE_HYBRIDIZATION_HISTORY
(in
CacheableDataType
)
theta()
(in
ICoorOrbitalData
)
true_positive
(in
rosetta.numeric
)
template_index()
(in
ExtraThreadingMover
)
theta()
(in
Pose
)
truefalseoption()
(in
rosetta.basic.options._basic_options_
)
template_index()
(in
ThreadingMover
)
theta()
(in
EulerAngles_Real
)
TrueFilter
(in
rosetta.protocols.filters._protocols_filters_
)
template_name()
(in
AlignedThreadOperation
)
theta()
(in
EulerAngles_double
)
TrueFilterAP
(in
rosetta.protocols.filters._protocols_filters_
)
template_number()
(in
ChunkTrialMover
)
theta()
(in
EulerAngles_float
)
TrueFilterCAP
(in
rosetta.protocols.filters._protocols_filters_
)
template_pose()
(in
ThreadingMover
)
theta()
(in
DimerPairing
)
TrueFilterCreator
(in
rosetta.protocols.filters._protocols_filters_
)
template_poses()
(in
InnerMultiThreadingJob
)
theta0()
(in
MMBondAngleResidueTypeParam
)
TrueFilterCreatorAP
(in
rosetta.protocols.filters._protocols_filters_
)
template_res_cache()
(in
EnzdesCstParamCache
)
theta_degrees()
(in
EulerAngles_Real
)
TrueFilterCreatorCAP
(in
rosetta.protocols.filters._protocols_filters_
)
template_res_cache_size()
(in
EnzdesCstParamCache
)
theta_degrees()
(in
EulerAngles_double
)
TrueResidueSelector
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
)
template_size()
(in
MembraneJump
)
theta_degrees()
(in
EulerAngles_float
)
TrueResidueSelectorAP
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
)
template_stem1()
(in
SSMotifFinder
)
theta_radians()
(in
EulerAngles_Real
)
TrueResidueSelectorCAP
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
)
template_stem2()
(in
SSMotifFinder
)
theta_radians()
(in
EulerAngles_double
)
TrueResidueSelectorCreator
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
)
TemplateAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
theta_radians()
(in
EulerAngles_float
)
TrueResidueSelectorCreatorAP
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
)
TemplateCAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
thickness
(in
MEM
)
TrueResidueSelectorCreatorCAP
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
)
TemplateHistory
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
thickness
(in
rosetta.core.conformation.membrane._core_conformation_membrane_
)
TRUNCATED_SCORE_EVALUATOR
(in
rosetta.basic
)
TemplateHistoryAP
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
thickness
(in
rosetta.core.conformation.membrane
)
TRUNCATED_SCORE_EVALUATOR
(in
ProfTag
)
TemplateHistoryCAP
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
thickness()
(in
Membrane_FAEmbed
)
TRUNCATED_SCORE_EVALUATOR
(in
rosetta.basic._basic_
)
TemplateJumpSetup
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
Thio
(in
rosetta.protocols.fldsgn.topology
)
TruncatedScoreEvaluator
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
TemplateJumpSetupAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
Thio
(in
SheetFoldType
)
TruncatedScoreEvaluatorAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
TemplateJumpSetupCAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
Thio
(in
rosetta.protocols.fldsgn.topology._protocols_fldsgn_topology_
)
TruncatedScoreEvaluatorCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
Templates
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
Thioredoxin
(in
rosetta.protocols.fldsgn.topology
)
trust_fold_tree()
(in
LoopMover
)
templates_from_cmd_line()
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
Thioredoxin
(in
SheetFoldType
)
try_for_more()
(in
IRCollection
)
TemplatesAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
Thioredoxin
(in
rosetta.protocols.fldsgn.topology._protocols_fldsgn_topology_
)
try_point_mutants()
(in
VIP_Mover
)
TemplatesCAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
this_aa()
(in
PNatAAOptERotamerData
)
TryRotamers
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
temporarily_fix_everything()
(in
PackerTask
)
thread
(in
rosetta.utility
)
TryRotamersAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
temporarily_fix_everything()
(in
PackerTask_
)
thread()
(in
RelativePoseFilter
)
TryRotamersCAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
temporarily_set_pack_residue()
(in
PackerTask
)
thread_seq()
(in
RelativePoseFilter
)
TryRotamersCreator
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
temporarily_set_pack_residue()
(in
PackerTask_
)
ThreadingJob
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
TryRotamersCreatorAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
ten_A_neighbor_graph
(in
ContextGraphType
)
ThreadingJobAP
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
TryRotamersCreatorCAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
ten_A_neighbor_graph
(in
rosetta.core.scoring._core_scoring_
)
ThreadingJobCAP
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
trytry_ifstream_open()
(in
rosetta.utility.file._utility_file_
)
ten_A_neighbor_graph
(in
rosetta.core.scoring
)
ThreadingJobInputter
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
trytry_ofstream_open()
(in
rosetta.utility.file._utility_file_
)
ten_A_neighbor_graph
(in
rosetta
)
ThreadingJobInputterAP
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
TS1_PSEUDOCONTACT_SHIFT_DATA
(in
Enum
)
tenA_neighbor_graph()
(in
Energies
)
ThreadingJobInputterCAP
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
TS1_PSEUDOCONTACT_SHIFT_DATA
(in
CacheableDataType
)
TenANeighborEdge
(in
rosetta.core.scoring._core_scoring_
)
ThreadingJobInputterCreator
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
TS2_PSEUDOCONTACT_SHIFT_DATA
(in
Enum
)
TenANeighborEdgeAP
(in
rosetta.core.scoring._core_scoring_
)
ThreadingJobInputterCreatorAP
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
TS2_PSEUDOCONTACT_SHIFT_DATA
(in
CacheableDataType
)
TenANeighborEdgeCAP
(in
rosetta.core.scoring._core_scoring_
)
ThreadingJobInputterCreatorCAP
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
TS3_PSEUDOCONTACT_SHIFT_DATA
(in
Enum
)
TenANeighborGraph
(in
rosetta.core.scoring._core_scoring_
)
ThreadingMover
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
TS3_PSEUDOCONTACT_SHIFT_DATA
(in
CacheableDataType
)
TenANeighborGraphAP
(in
rosetta.core.scoring._core_scoring_
)
ThreadingMoverAP
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
TS4_PSEUDOCONTACT_SHIFT_DATA
(in
Enum
)
TenANeighborGraphCAP
(in
rosetta.core.scoring._core_scoring_
)
ThreadingMoverCAP
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
TS4_PSEUDOCONTACT_SHIFT_DATA
(in
CacheableDataType
)
TenANeighborNode
(in
rosetta.core.scoring._core_scoring_
)
ThreadSequenceOperation
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
Tumble
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
TenANeighborNodeAP
(in
rosetta.core.scoring._core_scoring_
)
ThreadSequenceOperationAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
TumbleAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
TenANeighborNodeCAP
(in
rosetta.core.scoring._core_scoring_
)
ThreadSequenceOperationCAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
TumbleCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
TensorsOptimizer
(in
rosetta.protocols.scoring.methods.pcs._protocols_scoring_methods_pcs_
)
ThreadSequenceOperationCreator
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
TumbleCreator
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
TensorsOptimizer
(in
rosetta.protocols.scoring.methods.pcs2._protocols_scoring_methods_pcs2_
)
ThreadSequenceOperationCreatorAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
TumbleCreatorAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
TensorsOptimizer_Ts1
(in
rosetta.protocols.scoring.methods.pcsTs1._protocols_scoring_methods_pcsTs1_
)
ThreadSequenceOperationCreatorCAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
TumbleCreatorCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
TensorsOptimizer_Ts1AP
(in
rosetta.protocols.scoring.methods.pcsTs1._protocols_scoring_methods_pcsTs1_
)
three_prime_chain_break_res()
(in
RNA_ChainClosableGeometryChecker
)
turn_off_cter_insert()
(in
ModelCDRH3
)
TensorsOptimizer_Ts1CAP
(in
rosetta.protocols.scoring.methods.pcsTs1._protocols_scoring_methods_pcsTs1_
)
THREE_PRIME_END_OH
(in
rosetta
)
turn_off_flank_relax()
(in
H3RefineCCD
)
TensorsOptimizer_Ts2
(in
rosetta.protocols.scoring.methods.pcsTs2._protocols_scoring_methods_pcsTs2_
)
THREE_PRIME_END_OH
(in
rosetta.core.chemical
)
turn_off_H3_filter()
(in
H3PerturbCCD
)
TensorsOptimizer_Ts2AP
(in
rosetta.protocols.scoring.methods.pcsTs2._protocols_scoring_methods_pcsTs2_
)
THREE_PRIME_END_OH
(in
rosetta.core.chemical._core_chemical_
)
turn_off_h3_filter()
(in
H3RefineCCD
)
TensorsOptimizer_Ts2CAP
(in
rosetta.protocols.scoring.methods.pcsTs2._protocols_scoring_methods_pcsTs2_
)
THREE_PRIME_END_OH
(in
VariantType
)
turn_off_H3_filter()
(in
ModelCDRH3
)
TensorsOptimizer_Ts3
(in
rosetta.protocols.scoring.methods.pcsTs3._protocols_scoring_methods_pcsTs3_
)
THREE_PRIME_PACKABLE_PHOSPHATE
(in
rosetta
)
turn_off_hbonds_to_ester_oxygens()
(in
rosetta.core.chemical._core_chemical_
)
TensorsOptimizer_Ts3AP
(in
rosetta.protocols.scoring.methods.pcsTs3._protocols_scoring_methods_pcsTs3_
)
THREE_PRIME_PACKABLE_PHOSPHATE
(in
rosetta.core.chemical
)
turn_off_repulsive_ramp()
(in
RefineBetaBarrel
)
TensorsOptimizer_Ts3CAP
(in
rosetta.protocols.scoring.methods.pcsTs3._protocols_scoring_methods_pcsTs3_
)
THREE_PRIME_PACKABLE_PHOSPHATE
(in
rosetta.core.chemical._core_chemical_
)
turn_off_rna_chem_map_during_optimize()
(in
StepWiseRNA_ModelerOptions
)
TensorsOptimizer_Ts4
(in
rosetta.protocols.scoring.methods.pcsTs4._protocols_scoring_methods_pcsTs4_
)
THREE_PRIME_PACKABLE_PHOSPHATE
(in
VariantType
)
turn_on_benchmark()
(in
H3RefineCCD
)
TensorsOptimizer_Ts4AP
(in
rosetta.protocols.scoring.methods.pcsTs4._protocols_scoring_methods_pcsTs4_
)
THREE_PRIME_PHOSPHATE
(in
rosetta
)
turn_on_benchmark()
(in
RefineOneCDRLoop
)
TensorsOptimizer_Ts4CAP
(in
rosetta.protocols.scoring.methods.pcsTs4._protocols_scoring_methods_pcsTs4_
)
THREE_PRIME_PHOSPHATE
(in
rosetta.core.chemical
)
twelve_A_neighbor_graph
(in
ContextGraphType
)
TensorsOptimizerAP
(in
rosetta.protocols.scoring.methods.pcs._protocols_scoring_methods_pcs_
)
THREE_PRIME_PHOSPHATE
(in
rosetta.core.chemical._core_chemical_
)
twelve_A_neighbor_graph
(in
rosetta.core.scoring._core_scoring_
)
TensorsOptimizerAP
(in
rosetta.protocols.scoring.methods.pcs2._protocols_scoring_methods_pcs2_
)
THREE_PRIME_PHOSPHATE
(in
VariantType
)
twelve_A_neighbor_graph
(in
rosetta.core.scoring
)
TensorsOptimizerCAP
(in
rosetta.protocols.scoring.methods.pcs._protocols_scoring_methods_pcs_
)
THREE_PRIME_PHOSPHATE
(in
rosetta.protocols.stepwise.modeler.rna.phosphate
)
twelve_A_neighbor_graph
(in
rosetta
)
TensorsOptimizerCAP
(in
rosetta.protocols.scoring.methods.pcs2._protocols_scoring_methods_pcs2_
)
THREE_PRIME_PHOSPHATE
(in
PhosphateTerminus
)
twelveA_neighbor_graph()
(in
Energies
)
TensorsOptimizerFix
(in
rosetta.protocols.scoring.methods.pcs2._protocols_scoring_methods_pcs2_
)
THREE_PRIME_PHOSPHATE
(in
rosetta.protocols.stepwise.modeler.rna.phosphate._protocols_stepwise_modeler_rna_phosphate_
)
TwelveANeighborEdge
(in
rosetta.core.scoring._core_scoring_
)
TensorsOptimizerFixAP
(in
rosetta.protocols.scoring.methods.pcs2._protocols_scoring_methods_pcs2_
)
THREEDGRID
(in
rosetta
)
TwelveANeighborEdgeAP
(in
rosetta.core.scoring._core_scoring_
)
TensorsOptimizerFixCAP
(in
rosetta.protocols.scoring.methods.pcs2._protocols_scoring_methods_pcs2_
)
THREEDGRID
(in
rosetta.core.conformation
)
TwelveANeighborEdgeCAP
(in
rosetta.core.scoring._core_scoring_
)
TensorsOptimizerSvd
(in
rosetta.protocols.scoring.methods.pcs2._protocols_scoring_methods_pcs2_
)
THREEDGRID
(in
Strategy
)
TwelveANeighborGraph
(in
rosetta.core.scoring._core_scoring_
)
TensorsOptimizerSvdAP
(in
rosetta.protocols.scoring.methods.pcs2._protocols_scoring_methods_pcs2_
)
THREEDGRID
(in
rosetta.core.conformation._core_conformation_
)
TwelveANeighborGraphAP
(in
rosetta.core.scoring._core_scoring_
)
TensorsOptimizerSvdCAP
(in
rosetta.protocols.scoring.methods.pcs2._protocols_scoring_methods_pcs2_
)
threshold()
(in
NumNeighborsSelector
)
TwelveANeighborGraphCAP
(in
rosetta.core.scoring._core_scoring_
)
term_length()
(in
NMerSVMEnergy
)
threshold()
(in
CalculatorFilter
)
TwelveANeighborNode
(in
rosetta.core.scoring._core_scoring_
)
terminal_res()
(in
StepWiseWorkingParameters
)
threshold()
(in
IfThenFilter
)
TwelveANeighborNodeAP
(in
rosetta.core.scoring._core_scoring_
)
termini_penalty()
(in
MembranePotential
)
threshold()
(in
ReplicateFilter
)
TwelveANeighborNodeCAP
(in
rosetta.core.scoring._core_scoring_
)
terminus()
(in
PhosphateMove
)
threshold()
(in
MatchResidues
)
twist()
(in
DNABasestep
)
TerminusDistanceFilter
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
threshold()
(in
ClashCheckFilter
)
Two
(in
PiContributionType
)
TerminusDistanceFilterAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
threshold()
(in
OligomericAverageDegreeFilter
)
Two
(in
GasteigerAtomTypeData
)
TerminusDistanceFilterCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
threshold()
(in
AverageDegreeFilter
)
two()
(in
NumericTraits_T_double_T
)
TerminusDistanceFilterCreator
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
threshold()
(in
BindingStrainFilter
)
two()
(in
NumericTraits_T_float_T
)
TerminusDistanceFilterCreatorAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
threshold()
(in
EnergyPerResidueFilter
)
two()
(in
NumericTraits_T_long_double_T
)
TerminusDistanceFilterCreatorCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
threshold()
(in
MultipleSigmoids
)
two_parts_chain1()
(in
SetAtomTree
)
test()
(in
DummyClass
)
threshold()
(in
Operator
)
two_step()
(in
SaveAndRetrieveSidechains
)
TEST1
(in
rosetta.basic
)
threshold()
(in
ResidueIEFilter
)
twobody_energies()
(in
DecomposeAndReweightEnergiesCalculator
)
TEST1
(in
ProfTag
)
threshold()
(in
Sigmoid
)
TwoBodyEnergy
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
TEST1
(in
rosetta.basic._basic_
)
threshold()
(in
TaskAwareSASAFilter
)
TwoBodyEnergyAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
TEST2
(in
rosetta.basic
)
threshold()
(in
TaskAwareScoreTypeFilter
)
TwoBodyEnergyCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
TEST2
(in
ProfTag
)
threshold()
(in
SelectByDeltaScoreOperation
)
Type
(in
ICoorAtomID
)
TEST2
(in
rosetta.basic._basic_
)
threshold_probability()
(in
RotamerBoltzmannWeight
)
Type
(in
InterfaceInfo
)
TEST3
(in
rosetta.basic
)
tighten_memory()
(in
VallLibrary
)
type()
(in
DatabaseSessionOptions
)
TEST3
(in
ProfTag
)
tighten_memory()
(in
VallSection
)
type()
(in
ResourceLocator
)
TEST3
(in
rosetta.basic._basic_
)
tighten_memory()
(in
PDBInfo
)
type()
(in
ResourceOptions
)
TEST4
(in
rosetta.basic
)
tightness()
(in
DisulfideEntropyFilter
)
type()
(in
DatabaseResourceLocator
)
TEST4
(in
ProfTag
)
tilt()
(in
DNABasestep
)
type()
(in
FileListResourceLocator
)
TEST4
(in
rosetta.basic._basic_
)
time_to_checkpoint()
(in
Timer
)
type()
(in
FileSystemResourceLocator
)
TEST5
(in
rosetta.basic
)
TimeEvaluator
(in
rosetta.protocols.evaluation._protocols_evaluation_
)
type()
(in
NullResourceLocator
)
TEST5
(in
ProfTag
)
TimeEvaluatorAP
(in
rosetta.protocols.evaluation._protocols_evaluation_
)
type()
(in
ICoorAtomID
)
TEST5
(in
rosetta.basic._basic_
)
TimeEvaluatorCAP
(in
rosetta.protocols.evaluation._protocols_evaluation_
)
type()
(in
ResidueLoaderOptions
)
test_all_moves()
(in
StepWiseMonteCarloOptions
)
TimeFilter
(in
rosetta.protocols.filters._protocols_filters_
)
type()
(in
Atom
)
test_chunk()
(in
AllowPdbIdFilter
)
TimeFilterAP
(in
rosetta.protocols.filters._protocols_filters_
)
type()
(in
Residue
)
test_chunk()
(in
DenyPdbIdFilter
)
TimeFilterCAP
(in
rosetta.protocols.filters._protocols_filters_
)
type()
(in
OrbitalXYZCoords
)
test_chunk()
(in
VallChunkFilter
)
TimeFilterCreator
(in
rosetta.protocols.filters._protocols_filters_
)
type()
(in
SymmDataOptions
)
test_epigraft_and_contextStructure_clashes()
(in
MotifGraftMover
)
TimeFilterCreatorAP
(in
rosetta.protocols.filters._protocols_filters_
)
type()
(in
BBTorsionAndAnglesSRFD
)
test_for_stage_end()
(in
IterativeBase
)
TimeFilterCreatorCAP
(in
rosetta.protocols.filters._protocols_filters_
)
type()
(in
BBTorsionSRFD
)
test_loop_sample()
(in
LoopHashLibrary
)
Timer
(in
rosetta.basic.gpu._basic_gpu_
)
type()
(in
DownJumpSRFD
)
test_move()
(in
RotamerDumpMover
)
Timer
(in
rosetta.protocols.checkpoint._protocols_checkpoint_
)
type()
(in
Frame
)
test_move()
(in
AbrelaxMover
)
TimerAP
(in
rosetta.basic.gpu._basic_gpu_
)
type()
(in
IndependentBBTorsionSRFD
)
test_move()
(in
ClassicAbinitio
)
TimerAP
(in
rosetta.protocols.checkpoint._protocols_checkpoint_
)
type()
(in
JumpingFrame
)
test_move()
(in
ConstraintFragmentSampler
)
TimerCAP
(in
rosetta.basic.gpu._basic_gpu_
)
type()
(in
NonContinuousFrame
)
test_move()
(in
DomainAssembly
)
TimerCAP
(in
rosetta.protocols.checkpoint._protocols_checkpoint_
)
type()
(in
SecstructSRFD
)
test_move()
(in
DoubleLayerKinematicAbinitio
)
Times()
(in
Quaternion
)
type()
(in
SingleResidueFragData
)
test_move()
(in
FoldConstraints
)
timestamp()
(in
Job
)
type()
(in
UpJumpSRFD
)
test_move()
(in
FragmentSampler
)
timestamp()
(in
rosetta.utility._utility_
)
type()
(in
DOF_ID
)
test_move()
(in
JumpingFoldConstraintsWrapper
)
timestamp_short()
(in
rosetta.utility._utility_
)
type()
(in
TorsionID
)
test_move()
(in
KinematicAbinitio
)
title()
(in
HeaderInformation
)
type()
(in
ImportPoseOptions
)
test_move()
(in
KinematicTaskControl
)
tm_projection_penalty()
(in
MembranePotential
)
type()
(in
FileDataOptions
)
test_move()
(in
LoopJumpFoldCst
)
TMalign
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
type()
(in
PDB_DReaderOptions
)
test_move()
(in
MembraneAbinitio
)
TMalignAP
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
type()
(in
SilentFileOptions
)
test_move()
(in
Protocol
)
TMalignCAP
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
type()
(in
DOF_Node
)
test_move()
(in
ResolutionSwitcher
)
tmh_inserted()
(in
MembraneTopology
)
type()
(in
DunbrackConstraint
)
test_move()
(in
AbscriptLoopCloserCM
)
tmhelix()
(in
MembraneTopology
)
type()
(in
RotamerConstraint
)
test_move()
(in
AbscriptMover
)
tmregion()
(in
MembraneTopology
)
type()
(in
DC
)
test_move()
(in
AbscriptStageMover
)
TMscore
(in
rosetta.core.scoring._core_scoring_
)
type()
(in
RDC
)
test_move()
(in
ConstraintPreparer
)
TMscore()
(in
TMalign
)
type()
(in
RDC_Rohl
)
test_move()
(in
FragmentCM
)
TMscore8_search()
(in
TMalign
)
type()
(in
AmbiguousConstraint
)
test_move()
(in
FragmentJumpCM
)
TMscoreAP
(in
rosetta.core.scoring._core_scoring_
)
type()
(in
AmbiguousNMRConstraint
)
test_move()
(in
RigidChunkCM
)
TMscoreCAP
(in
rosetta.core.scoring._core_scoring_
)
type()
(in
AmbiguousNMRDistanceConstraint
)
test_move()
(in
StagePreparer
)
TMscoreStore
(in
rosetta.core.scoring._core_scoring_
)
type()
(in
AngleConstraint
)
test_move()
(in
StructPerturberCM
)
TMscoreStoreAP
(in
rosetta.core.scoring._core_scoring_
)
type()
(in
AtomPairConstraint
)
test_move()
(in
InterfaceAnalyzerMover
)
TMscoreStoreCAP
(in
rosetta.core.scoring._core_scoring_
)
type()
(in
BackboneStubConstraint
)
test_move()
(in
LoopAnalyzerMover
)
to_all_atom()
(in
DockingProtocol
)
type()
(in
BackboneStubLinearConstraint
)
test_move()
(in
PackStatMover
)
to_bare_name()
(in
FileName
)
type()
(in
BigBinConstraint
)
test_move()
(in
AnchoredDesignMover
)
to_centroid()
(in
DockingProtocol
)
type()
(in
BoundFunc
)
test_move()
(in
AnchoredPerturbMover
)
to_centroid()
(in
TemperedDocking
)
type()
(in
ConstantConstraint
)
test_move()
(in
AnchoredRefineMover
)
to_centroid()
(in
rosetta.protocols.medal._protocols_medal_
)
type()
(in
Constraint
)
test_move()
(in
AntibodyModelerProtocol
)
to_diag()
(in
xyzMatrix_Real
)
type()
(in
CoordinateConstraint
)
test_move()
(in
CDRsMinPackMin
)
to_diag()
(in
xyzMatrix_SSize
)
type()
(in
DihedralConstraint
)
test_move()
(in
CloseOneCDRLoop
)
to_diag()
(in
xyzMatrix_Size
)
type()
(in
DihedralPairConstraint
)
test_move()
(in
GraftCDRLoopsProtocol
)
to_diag()
(in
xyzMatrix_T_float_T
)
type()
(in
DistancePairConstraint
)
test_move()
(in
GraftOneCDRLoop
)
to_diag()
(in
xyzMatrix_double
)
type()
(in
FabConstraint
)
test_move()
(in
GraftedStemOptimizer
)
to_diag()
(in
xyzMatrix_float
)
type()
(in
KofNConstraint
)
test_move()
(in
H3CterInsert
)
to_do()
(in
Job
)
type()
(in
LocalCoordinateConstraint
)
test_move()
(in
H3PerturbCCD
)
to_entry()
(in
PatchdockReader
)
type()
(in
MultiConstraint
)
test_move()
(in
H3RefineCCD
)
to_identity()
(in
Quaternion_Real
)
type()
(in
NamedAngleConstraint
)
test_move()
(in
LHRepulsiveRamp
)
to_identity()
(in
Quaternion_double
)
type()
(in
NamedAtomPairConstraint
)
test_move()
(in
ModelCDRH3
)
to_identity()
(in
Quaternion_float
)
type()
(in
NonResidueTypeConstraint
)
test_move()
(in
RefineBetaBarrel
)
to_identity()
(in
xyzMatrix_Real
)
type()
(in
ResidueTypeConstraint
)
test_move()
(in
RefineOneCDRLoop
)
to_identity()
(in
xyzMatrix_SSize
)
type()
(in
ResidueTypeLinkingConstraint
)
test_move()
(in
RefineOneCDRLoopCentroid
)
to_identity()
(in
xyzMatrix_Size
)
type()
(in
SequenceProfileConstraint
)
test_move()
(in
CDRDihedralConstraintMover
)
to_identity()
(in
xyzMatrix_T_float_T
)
type()
(in
SiteConstraint
)
test_move()
(in
ParatopeEpitopeSiteConstraintMover
)
to_identity()
(in
xyzMatrix_double
)
type()
(in
SiteConstraintResidues
)
test_move()
(in
ParatopeSiteConstraintMover
)
to_identity()
(in
xyzMatrix_float
)
type()
(in
ElectronDensityOptions
)
test_move()
(in
AntibodyDesignMover
)
to_local_coordinate()
(in
HomogeneousTransform_T_double_T
)
type()
(in
FiberDiffractionOptions
)
test_move()
(in
AntibodyDesignProtocol
)
to_local_name()
(in
FileName
)
type()
(in
MotifHash
)
test_move()
(in
MutateFrameworkForCluster
)
to_quaternion()
(in
xyzTransform_T_double_T
)
type()
(in
ResPairMotif
)
test_move()
(in
AntibodyModeler
)
to_quaternion()
(in
xyzTransform_T_float_T
)
type()
(in
RNA_Reactivity
)
test_move()
(in
CDRH3Modeler
)
to_res()
(in
SSMotifFinder
)
type()
(in
ChemicalShiftSequence
)
test_move()
(in
CloseOneMover
)
to_res()
(in
StemFinder
)
type()
(in
CompositeSequence
)
test_move()
(in
GraftMover
)
to_rotation_matrix()
(in
EulerAngles_Real
)
type()
(in
ScoringScheme
)
test_move()
(in
GraftOneMover
)
to_rotation_matrix()
(in
EulerAngles_double
)
type()
(in
Sequence
)
test_move()
(in
LoopRlxMover
)
to_rotation_matrix()
(in
EulerAngles_float
)
type()
(in
SequenceCoupling
)
test_move()
(in
BackrubMover
)
to_string()
(in
VallFragmentScore
)
type()
(in
SequenceProfile
)
test_move()
(in
BackrubProtocol
)
to_string()
(in
NamedAtomID
)
type()
(in
FunctionToken
)
test_move()
(in
BackrubSidechainMover
)
to_string()
(in
SequenceMapping
)
type()
(in
LiteralToken
)
test_move()
(in
CanonicalSamplingMover
)
to_string()
(in
rosetta.core.id._core_id_
)
type()
(in
SimpleToken
)
test_move()
(in
FixedTemperatureController
)
to_string()
(in
FoldTree
)
type()
(in
Token
)
test_move()
(in
MetricRecorder
)
to_string()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
type()
(in
VariableToken
)
test_move()
(in
MetropolisHastingsMover
)
to_string()
(in
Constraint
)
type()
(in
CheckPointer
)
test_move()
(in
ParallelTempering
)
to_string()
(in
ChemicalShiftSequence
)
type()
(in
ResidueFeature
)
test_move()
(in
ProgressBarObserver
)
to_string()
(in
CompositeSequence
)
type()
(in
SSFeature
)
test_move()
(in
SidechainMetropolisHastingsMover
)
to_string()
(in
Sequence
)
type()
(in
TorsionFeature
)
test_move()
(in
SimulatedTempering
)
to_string()
(in
SequenceAlignment
)
type()
(in
AmbiguousMultiConstraint
)
test_move()
(in
TemperatureController
)
to_string()
(in
SequenceCoupling
)
type()
(in
BindingSiteConstraint
)
test_move()
(in
TemperingBase
)
to_string()
(in
SequenceProfile
)
type()
(in
COMCoordinateConstraint
)
test_move()
(in
ThermodynamicMover
)
to_string()
(in
FunctionToken
)
type()
(in
SequenceCoupling1BDConstraint
)
test_move()
(in
ThermodynamicObserver
)
to_string()
(in
LiteralToken
)
type()
(in
SequenceCouplingConstraint
)
test_move()
(in
TrialCounterObserver
)
to_string()
(in
SimpleToken
)
type()
(in
CutBiasClaim
)
test_move()
(in
AssignToClustersMover
)
to_string()
(in
Token
)
type()
(in
EnvClaim
)
test_move()
(in
ClusterBase
)
to_string()
(in
VariableToken
)
type()
(in
JumpClaim
)
test_move()
(in
ClusterPhilStyle
)
to_string()
(in
KDPoint
)
type()
(in
TorsionClaim
)
test_move()
(in
ClusterPhilStyle_Loop
)
to_string()
(in
Entity
)
type()
(in
VirtResClaim
)
test_move()
(in
ClusterPhilStyle_PoseReporter
)
to_string()
(in
EntityElement
)
type()
(in
XYZClaim
)
test_move()
(in
EnsembleConstraints
)
to_string()
(in
rosetta.protocols.moves._protocols_moves_
)
type()
(in
Loop
)
test_move()
(in
EnsembleConstraints_Simple
)
to_string()
(in
rosetta.protocols.stepwise.modeler.rna.phosphate._protocols_stepwise_modeler_rna_phosphate_
)
type()
(in
Contact
)
test_move()
(in
GatherPosesMover
)
to_string()
(in
rosetta.protocols.stepwise.monte_carlo.mover._protocols_stepwise_monte_carlo_mover_
)
type()
(in
LoopHashLibraryOptions
)
test_move()
(in
CoarseRNA_LoopCloser
)
toggle()
(in
BBClaim
)
type()
(in
LoopsFileOptions
)
test_move()
(in
ExtraThreadingMover
)
toggle()
(in
CutClaim
)
type()
(in
LipoFileOptions
)
test_move()
(in
LoopRelaxMover
)
toggle()
(in
DofClaim
)
type()
(in
SpanFileOptions
)
test_move()
(in
LoopRelaxThreadingMover
)
toggle()
(in
JumpClaim
)
type()
(in
Mover
)
test_move()
(in
MultiThreadingMover
)
toggle()
(in
LegacyRootClaim
)
type()
(in
ConstraintedOptimizationWeightFunc
)
test_move()
(in
PartialThreadingMover
)
toggle()
(in
SequenceClaim
)
type()
(in
DDGBindOptEData
)
test_move()
(in
RecoverSideChainsMover
)
toggle()
(in
SymmetryClaim
)
type()
(in
DDGMutationOptEData
)
test_move()
(in
StealLigandMover
)
Token
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
type()
(in
DGBindOptEData
)
test_move()
(in
StealSideChainsMover
)
token_type_name()
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
type()
(in
NestedEnergyTermDDGMutationOptEData
)
test_move()
(in
ThreadingMover
)
TokenAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
type()
(in
NestedEnergyTermPNatAAOptEPositionData
)
test_move()
(in
ContactMap
)
TokenCAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
type()
(in
OptEPositionData
)
test_move()
(in
FitBfactorsMover
)
tokenize()
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
type()
(in
PNatAAOptEPositionData
)
test_move()
(in
LoadDensityMapMover
)
tokenize_line()
(in
rosetta.core.pack.task._core_pack_task_
)
type()
(in
PNatLigPoseOptEData
)
test_move()
(in
RecomputeDensityMapMover
)
TokenSet
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
type()
(in
PNatRotOptEPositionData
)
test_move()
(in
SetCrystWeightMover
)
TokenSetAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
type()
(in
PNatStructureOptEData
)
test_move()
(in
SetRefinementOptionsMover
)
TokenSetCAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
type()
(in
PSSMOptEPositionData
)
test_move()
(in
TagPoseWithRefinementStatsMover
)
TokenType
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
type()
(in
PocketConstraint
)
test_move()
(in
UpdateSolventMover
)
tol()
(in
FlatHarmonicFunc
)
type()
(in
RBResidueRange
)
test_move()
(in
CreateAngleConstraint
)
tolerance()
(in
NumericTraits_T_double_T
)
type()
(in
CBScore
)
test_move()
(in
CreateDistanceConstraint
)
tolerance()
(in
NumericTraits_T_float_T
)
type()
(in
ConstraintSetScore
)
test_move()
(in
CreateTorsionConstraint
)
tolerance()
(in
NumericTraits_T_long_double_T
)
type()
(in
JointScore
)
test_move()
(in
DeclareBond
)
tolerance()
(in
BranchAngleOptimizer
)
type()
(in
LinkerScore
)
test_move()
(in
PeptideStubMover
)
tolerance()
(in
DnaInterfaceMinMover
)
type()
(in
RigidScore
)
test_move()
(in
ddGMover
)
tolerance()
(in
CCDLoopClosureMover
)
type()
(in
MotifHashRigidScore
)
test_move()
(in
GreedyOptMutationMover
)
tolerance()
(in
MinMover
)
type()
(in
TrisBpyScore
)
test_move()
(in
ParetoOptMutationMover
)
tolerance()
(in
SymMinMover
)
type()
(in
RotamerBoltzmannWeight
)
test_move()
(in
DesignProteinBackboneAroundDNA
)
tolerance()
(in
GeomSampleInfo
)
type()
(in
FragmentCost
)
test_move()
(in
DnaInterfaceMinMover
)
tolerated_overlap()
(in
MatchCollisionFilter
)
type()
(in
StepWiseBasicModelerOptions
)
test_move()
(in
DnaInterfaceMultiStateDesign
)
too_far()
(in
MaxSeqSepConstraintSet
)
type()
(in
StepWiseModelerOptions
)
test_move()
(in
DnaInterfacePacker
)
toolbox
(in
rosetta.protocols
)
type()
(in
StepWiseProteinModelerOptions
)
test_move()
(in
SeparateDnaFromNonDna
)
ToolboxKeys
(in
rosetta.protocols.loop_modeling._protocols_loop_modeling_
)
type()
(in
StepWiseRNA_ModelerOptions
)
test_move()
(in
ConformerSwitchMover
)
ToolboxKeysAP
(in
rosetta.protocols.loop_modeling._protocols_loop_modeling_
)
type()
(in
StepWiseMonteCarloOptions
)
test_move()
(in
DockMCMCycle
)
ToolboxKeysCAP
(in
rosetta.protocols.loop_modeling._protocols_loop_modeling_
)
type()
(in
StepWiseBasicOptions
)
test_move()
(in
DockMCMProtocol
)
tools
(in
rosetta.utility
)
type()
(in
JumpStepWiseSampler
)
test_move()
(in
DockMinMover
)
top()
(in
TokenSet
)
type()
(in
MC_Comb
)
test_move()
(in
DockSetupMover
)
top()
(in
DnaPosition
)
type()
(in
MC_OneTorsion
)
test_move()
(in
DockingEnsemblePrepackProtocol
)
Top7
(in
rosetta.protocols.fldsgn.topology
)
type()
(in
NoOpStepWiseSampler
)
test_move()
(in
DockingHighRes
)
Top7
(in
SheetFoldType
)
type()
(in
StepWiseSamplerAny
)
test_move()
(in
DockingHighResLegacy
)
Top7
(in
rosetta.protocols.fldsgn.topology._protocols_fldsgn_topology_
)
type()
(in
StepWiseSamplerBase
)
test_move()
(in
DockingInitialPerturbation
)
top_fragments()
(in
VallLibrarian
)
type()
(in
StepWiseSamplerComb
)
test_move()
(in
DockingLowRes
)
top_level_pool_size()
(in
HierarchicalLevel
)
type()
(in
StepWiseSamplerOneTorsion
)
test_move()
(in
DockingLowResEnsemble
)
TopCountOfAllInputs
(in
rosetta.protocols.features._protocols_features_
)
type()
(in
StepWiseSamplerOneValue
)
test_move()
(in
DockingPrepackProtocol
)
TopCountOfAllInputsAP
(in
rosetta.protocols.features._protocols_features_
)
type()
(in
StepWiseSamplerOneValueComb
)
test_move()
(in
DockingProtocol
)
TopCountOfAllInputsCAP
(in
rosetta.protocols.features._protocols_features_
)
type()
(in
StepWiseSamplerSized
)
test_move()
(in
DockingSlideIntoContact
)
TopCountOfEachInput
(in
rosetta.protocols.features._protocols_features_
)
type()
(in
StepWiseSamplerSizedAny
)
test_move()
(in
EllipsoidalRandomizationMover
)
TopCountOfEachInputAP
(in
rosetta.protocols.features._protocols_features_
)
type()
(in
StepWiseSamplerSizedComb
)
test_move()
(in
FaDockingSlideIntoContact
)
TopCountOfEachInputCAP
(in
rosetta.protocols.features._protocols_features_
)
type()
(in
CopyDofStepWiseSampler
)
test_move()
(in
InterfaceSidechainMinMover
)
TopEntitySet
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
type()
(in
ResidueAlternativeStepWiseSampler
)
test_move()
(in
SidechainMinMover
)
TopEntitySetAP
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
type()
(in
ResidueAlternativeStepWiseSamplerComb
)
test_move()
(in
TemperedDocking
)
TopEntitySetCAP
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
type()
(in
ResidueListStepWiseSampler
)
test_move()
(in
MPDockingMover
)
TOPO_RESAMPLING
(in
IterationStage
)
type()
(in
InputStreamStepWiseSampler
)
test_move()
(in
MPDockingSetupMover
)
TOPO_RESAMPLING
(in
IterativeBase
)
type()
(in
ProteinBetaAntiParallelStepWiseSampler
)
test_move()
(in
SaneDockingProtocol
)
topological_match_to()
(in
AtomTree
)
type()
(in
ProteinFragmentStepWiseSampler
)
test_move()
(in
AddAssemblyConstraints
)
topological_observers()
(in
AtomTree
)
type()
(in
ProteinMainChainStepWiseSampler
)
test_move()
(in
AssembleLinkerMover
)
topology
(in
rosetta.protocols.fldsgn
)
type()
(in
RigidBodyStepWiseSampler
)
test_move()
(in
CombineChainsMover
)
topology()
(in
PairingStatistics
)
type()
(in
RigidBodyStepWiseSamplerWithResidueAlternatives
)
test_move()
(in
PostDockAssemblyScorer
)
topology_broker
(in
rosetta.protocols
)
type()
(in
RigidBodyStepWiseSamplerWithResidueList
)
test_move()
(in
BfactorFittingMover
)
topology_broker()
(in
AbrelaxMover
)
type()
(in
RNA_ChiStepWiseSampler
)
test_move()
(in
DensityMorphingMover
)
topology_broker()
(in
FragmentSampler
)
type()
(in
RNA_KIC_Sampler
)
test_move()
(in
ReportFSC
)
topology_score()
(in
Template
)
type()
(in
RNA_KinematicCloser
)
test_move()
(in
ScaleMapIntensities
)
TopologyBrokerMover
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
type()
(in
RNA_MC_MultiSuite
)
test_move()
(in
SetupForDensityScoringMover
)
TopologyBrokerMoverAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
type()
(in
RNA_MC_Sugar
)
test_move()
(in
ClientMover
)
TopologyBrokerMoverCAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
type()
(in
RNA_MC_Suite
)
test_move()
(in
CoMTrackerCM
)
TopologyBrokerMoverCreator
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
type()
(in
RNA_NucleosideStepWiseSampler
)
test_move()
(in
EnvMover
)
TopologyBrokerMoverCreatorAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
type()
(in
RNA_SugarStepWiseSampler
)
test_move()
(in
ScriptCM
)
TopologyBrokerMoverCreatorCAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
type()
(in
RNA_SuiteStepWiseSampler
)
test_move()
(in
MultipleDomainMover
)
TopologyClaimer
(in
rosetta.protocols.topology_broker._protocols_topology_broker_'
)
type()
(in
AlignRMSD_Screener
)
test_move()
(in
RNA_DeNovoProtocol
)
TopologyClaimerAP
(in
rosetta.protocols.topology_broker._protocols_topology_broker_'
)
type()
(in
AnchorSugarScreener
)
test_move()
(in
RNA_FragmentMover
)
TopologyClaimerCAP
(in
rosetta.protocols.topology_broker._protocols_topology_broker_'
)
type()
(in
BaseBinMapUpdater
)
test_move()
(in
RNA_LoopCloser
)
TopOutFunc
(in
rosetta.core.scoring.func._core_scoring_func_
)
type()
(in
BaseCentroidScreener
)
test_move()
(in
RNA_Minimizer
)
TopOutFuncAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
type()
(in
BulgeApplier
)
test_move()
(in
RNA_Relaxer
)
TopOutFuncCAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
type()
(in
CentroidDistanceScreener
)
test_move()
(in
ReportToDB
)
TopPercentOfAllInputs
(in
rosetta.protocols.features._protocols_features_
)
type()
(in
FastForwardToNextResidueAlternative
)
test_move()
(in
TrajectoryReportToDB
)
TopPercentOfAllInputsAP
(in
rosetta.protocols.features._protocols_features_
)
type()
(in
FastForwardToNextRigidBody
)
test_move()
(in
SetupForFibrilMover
)
TopPercentOfAllInputsCAP
(in
rosetta.protocols.features._protocols_features_
)
type()
(in
IntegrationTestBreaker
)
test_move()
(in
BluePrintBDR
)
TopPercentOfEachInput
(in
rosetta.protocols.features._protocols_features_
)
type()
(in
O2PrimeScreener
)
test_move()
(in
CircularPermutation
)
TopPercentOfEachInputAP
(in
rosetta.protocols.features._protocols_features_
)
type()
(in
PackScreener
)
test_move()
(in
MatchResiduesMover
)
TopPercentOfEachInputCAP
(in
rosetta.protocols.features._protocols_features_
)
type()
(in
PartitionContactScreener
)
test_move()
(in
SheetConstraintsRCG
)
tor_U1D3()
(in
MatchConstraintFileInfo
)
type()
(in
PhosphateScreener
)
test_move()
(in
SetAACompositionPotential
)
tor_U1D3_samples()
(in
ExternalGeomSampler
)
type()
(in
PoseSelectionScreener
)
test_move()
(in
SetSecStructEnergies
)
tor_U2D2()
(in
MatchConstraintFileInfo
)
type()
(in
ProteinCCD_ClosureScreener
)
test_move()
(in
FlexPacker
)
tor_U2D2_samples()
(in
ExternalGeomSampler
)
type()
(in
RNA_ChainClosableGeometryResidueBasedScreener
)
test_move()
(in
FlexPepDockingAbInitio
)
tor_U3D1()
(in
MatchConstraintFileInfo
)
type()
(in
RNA_ChainClosableGeometryScreener
)
test_move()
(in
FlexPepDockingLowRes
)
tor_U3D1_samples()
(in
ExternalGeomSampler
)
type()
(in
RNA_ChainClosableGeometryStubBasedScreener
)
test_move()
(in
FlexPepDockingProtocol
)
tors_deriv_to_cartesian()
(in
rosetta.core.optimization._core_optimization_
)
type()
(in
RNA_ChainClosureScreener
)
test_move()
(in
FloppyTailMover
)
Torsion
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
type()
(in
ResidueContactScreener
)
test_move()
(in
FlxbbDesign
)
torsion()
(in
Conformation
)
type()
(in
SampleApplier
)
test_move()
(in
FlxbbDesignPack
)
torsion()
(in
BBTorsionSRFD
)
type()
(in
Scorer
)
test_move()
(in
InterlockAroma
)
torsion()
(in
TorsionID
)
type()
(in
StepWiseResiduePairScreener
)
test_move()
(in
BDR
)
torsion()
(in
Pose
)
type()
(in
StepWiseScreener
)
test_move()
(in
VarLengthBuild
)
torsion()
(in
rosetta.numeric.kinematic_closure._numeric_kinematic_closure_
)
type()
(in
StubApplier
)
test_move()
(in
RemodelConstraintGenerator
)
torsion()
(in
NormalMode
)
type()
(in
StubDistanceScreener
)
test_move()
(in
NonlocalFrags
)
torsion()
(in
Torsion
)
type()
(in
SugarInstantiator
)
test_move()
(in
TorsionFragmentMover
)
torsion2big_bin()
(in
TorsionFeature
)
type()
(in
TagDefinition
)
test_move()
(in
GeneralizedKIC
)
torsion2big_bin()
(in
rosetta.protocols.frags._protocols_frags_
)
type()
(in
VDW_BinScreener
)
test_move()
(in
AnchoredGraftMover
)
torsion2big_bin()
(in
RotamerRecovery
)
type()
(in
SurfaceVectorOptions
)
test_move()
(in
CCDEndsGraftMover
)
torsion2big_bin_id()
(in
rosetta.protocols.frag_picker.quota._protocols_frag_picker_quota_
)
type()
(in
DensityScoringClaimer
)
test_move()
(in
GraftMoverBase
)
torsion2index()
(in
ABEGOManager
)
type()
(in
FoldandDockClaimer
)
test_move()
(in
DeleteRegionMover
)
torsion2index_level1()
(in
ABEGOManager
)
type()
(in
MembraneTopologyClaimer
)
test_move()
(in
InsertPoseIntoPoseMover
)
torsion2index_level2()
(in
ABEGOManager
)
type()
(in
SymmetryClaimer
)
test_move()
(in
KeepRegionMover
)
torsion2index_level3()
(in
ABEGOManager
)
type()
(in
TopologyClaimer
)
test_move()
(in
ReplaceRegionMover
)
torsion2index_level4()
(in
ABEGOManager
)
type1()
(in
MotifHash
)
test_move()
(in
BackboneGridSampler
)
torsion_angle()
(in
Conformation
)
type1()
(in
ResPairMotif
)
test_move()
(in
BundleGridSampler
)
torsion_angle()
(in
AtomTree
)
type2()
(in
MotifHash
)
test_move()
(in
FitSimpleHelix
)
torsion_angle_dof_id()
(in
AtomTree
)
type2()
(in
ResPairMotif
)
test_move()
(in
MakeBundle
)
torsion_bin()
(in
TorsionFeature
)
type_for_fake_atoms()
(in
GasteigerAtomTypeSet
)
test_move()
(in
MakeBundleHelix
)
torsion_changes_move_other_monomers()
(in
SymmetryInfo
)
type_name()
(in
FixTemplateJumpSetup
)
test_move()
(in
PerturbBundle
)
torsion_constraints_from_chi_rotamers()
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
type_name()
(in
TemplateJumpSetup
)
test_move()
(in
PerturbBundleHelix
)
torsion_constraints_from_rotamers()
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
type_name()
(in
AntibodyFeatures
)
test_move()
(in
BackboneTorsionPerturbation
)
torsion_delta()
(in
CCDLoopClosureMover
)
type_name()
(in
AntibodyFeaturesCreator
)
test_move()
(in
BackboneTorsionSampler
)
torsion_features_string()
(in
KinematicMover
)
type_name()
(in
CDRClusterFeatures
)
test_move()
(in
CartesianHybridize
)
torsion_features_string()
(in
LoopMover
)
type_name()
(in
CDRClusterFeaturesCreator
)
test_move()
(in
CartesianSampler
)
torsion_id()
(in
TorsionID_Range
)
type_name()
(in
AlignRmsdTargetEvaluatorCreator
)
test_move()
(in
ChunkTrialMover
)
torsion_id()
(in
DOF_Node
)
type_name()
(in
CombinedConstraintEvaluatorCreator
)
test_move()
(in
DomainAssembly
)
torsion_id()
(in
BackboneGridSamplerHelper
)
type_name()
(in
ConstraintEvaluatorCreator
)
test_move()
(in
FoldTreeHybridize
)
torsion_id_begin()
(in
MoveMap
)
type_name()
(in
EvaluatorCreator
)
test_move()
(in
HybridizeProtocol
)
torsion_id_end()
(in
MoveMap
)
type_name()
(in
AtomAtomPairFeatures
)
test_move()
(in
InsertChunkMover
)
torsion_id_ranges()
(in
BackrubMover
)
type_name()
(in
AtomAtomPairFeaturesCreator
)
test_move()
(in
MRMover
)
torsion_id_ranges()
(in
BackrubSidechainMover
)
type_name()
(in
AtomInResidueAtomInResiduePairFeatures
)
test_move()
(in
WeightedFragmentSmoothTrialMover
)
torsion_id_ranges()
(in
ThermodynamicMover
)
type_name()
(in
AtomInResidueAtomInResiduePairFeaturesCreator
)
test_move()
(in
WeightedFragmentTrialMover
)
torsion_id_ranges()
(in
BalancedKicMover
)
type_name()
(in
AtomTypesFeatures
)
test_move()
(in
IdealizeMover
)
torsion_id_ranges()
(in
RigidBodyDeterministicSpinMover
)
type_name()
(in
AtomTypesFeaturesCreator
)
test_move()
(in
BalancedKicMover
)
torsion_id_ranges()
(in
RigidBodyDofPerturbMover
)
type_name()
(in
BatchFeatures
)
test_move()
(in
KicMover
)
torsion_id_ranges()
(in
RigidBodyDofRandomTransMover
)
type_name()
(in
BetaTurnDetection
)
test_move()
(in
AddHydrogen
)
torsion_id_ranges()
(in
RigidBodyDofRandomizeMover
)
type_name()
(in
BetaTurnDetectionFeatures
)
test_move()
(in
AddHydrogens
)
torsion_id_ranges()
(in
RigidBodyDofSeqPerturbMover
)
type_name()
(in
BetaTurnDetectionFeaturesCreator
)
test_move()
(in
CompoundTranslate
)
torsion_id_ranges()
(in
RigidBodyDofSeqRandomizeMover
)
type_name()
(in
ChargeChargeFeatures
)
test_move()
(in
ComputeLigandRDF
)
torsion_id_ranges()
(in
RigidBodyDofSeqTransMover
)
type_name()
(in
ChargeChargeFeaturesCreator
)
test_move()
(in
FinalMinimizer
)
torsion_id_ranges()
(in
RigidBodyDofTransMover
)
type_name()
(in
DdGFeatures
)
test_move()
(in
GrowLigand
)
torsion_id_ranges()
(in
RigidBodyMover
)
type_name()
(in
DdGFeaturesCreator
)
test_move()
(in
HighResDocker
)
torsion_id_ranges()
(in
RigidBodyPerturbMover
)
type_name()
(in
FeaturesReporter
)
test_move()
(in
InterfaceScoreCalculator
)
torsion_id_ranges()
(in
RigidBodyPerturbNoCenterMover
)
type_name()
(in
FeaturesReporterCreator
)
test_move()
(in
LigandDesign
)
torsion_id_ranges()
(in
RigidBodyPerturbRandomJumpMover
)
type_name()
(in
GeometricSolvationFeatures
)
test_move()
(in
MinimizeBackbone
)
torsion_id_ranges()
(in
RigidBodyRandomizeMover
)
type_name()
(in
GeometricSolvationFeaturesCreator
)
test_move()
(in
MinimizeLigand
)
torsion_id_ranges()
(in
RigidBodySpinMover
)
type_name()
(in
HBondFeatures
)
test_move()
(in
RandomConformerMover
)
torsion_id_ranges()
(in
RigidBodyTransMover
)
type_name()
(in
HBondFeaturesCreator
)
test_move()
(in
RandomConformers
)
torsion_id_ranges()
(in
UniformRigidBodyMover
)
type_name()
(in
HBondParameterFeatures
)
test_move()
(in
RigidSearchMover
)
torsion_id_ranges()
(in
UniformSphereTransMover
)
type_name()
(in
HBondParameterFeaturesCreator
)
test_move()
(in
Rotate
)
torsion_id_ranges()
(in
BBConRotMover
)
type_name()
(in
HelixCapFeatures
)
test_move()
(in
Rotates
)
torsion_id_ranges()
(in
BBG8T3AMover
)
type_name()
(in
HelixCapFeaturesCreator
)
test_move()
(in
SlideTogether
)
torsion_id_ranges()
(in
BBGaussianMover
)
type_name()
(in
InterfaceFeatures
)
test_move()
(in
StartFrom
)
torsion_id_ranges()
(in
BackboneMover
)
type_name()
(in
InterfaceFeaturesCreator
)
test_move()
(in
TetherLigand
)
torsion_id_ranges()
(in
ShearMover
)
type_name()
(in
JobDataFeatures
)
test_move()
(in
Transform
)
torsion_id_ranges()
(in
SmallMover
)
type_name()
(in
JobDataFeaturesCreator
)
test_move()
(in
Translate
)
torsion_id_ranges()
(in
JumpRotamerSidechainMover
)
type_name()
(in
LoopAnchorFeatures
)
test_move()
(in
UnconstrainedTorsionsMover
)
torsion_id_ranges()
(in
PerturbChiSidechainMover
)
type_name()
(in
LoopAnchorFeaturesCreator
)
test_move()
(in
WriteLigandMolFile
)
torsion_id_ranges()
(in
PerturbRotamerSidechainMover
)
type_name()
(in
OrbitalsFeatures
)
test_move()
(in
LoopBuildMover
)
torsion_id_ranges()
(in
SidechainMCMover
)
type_name()
(in
OrbitalsFeaturesCreator
)
test_move()
(in
LoopmodelWrapper
)
torsion_id_ranges()
(in
SidechainMover
)
type_name()
(in
PairFeatures
)
test_move()
(in
LoopBuilder
)
torsion_id_ranges()
(in
SidechainMoverBase
)
type_name()
(in
PairFeaturesCreator
)
test_move()
(in
LoopModeler
)
Torsion_Info
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
type_name()
(in
PdbDataFeatures
)
test_move()
(in
LoopMover
)
Torsion_InfoAP
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
type_name()
(in
PdbDataFeaturesCreator
)
test_move()
(in
LoopProtocol
)
Torsion_InfoCAP
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
type_name()
(in
PoseCommentsFeatures
)
test_move()
(in
MinimizationRefiner
)
torsion_is_independent()
(in
SymmetryInfo
)
type_name()
(in
PoseCommentsFeaturesCreator
)
test_move()
(in
RepackingRefiner
)
torsion_name()
(in
SetTorsion
)
type_name()
(in
PoseConformationFeatures
)
test_move()
(in
RotamerTrialsRefiner
)
torsion_parameters()
(in
ResidueCartBondedParameters
)
type_name()
(in
PoseConformationFeaturesCreator
)
test_move()
(in
LegacyKicSampler
)
torsion_potential()
(in
RNA_EnergyMethodOptions
)
type_name()
(in
ProteinBackboneAtomAtomPairFeatures
)
test_move()
(in
AcceptanceCheck
)
torsion_sample_value()
(in
BackboneGridSamplerHelper
)
type_name()
(in
ProteinBackboneAtomAtomPairFeaturesCreator
)
test_move()
(in
LoopFilter
)
torsion_scale_factor()
(in
MinimizerMap
)
type_name()
(in
ProteinBackboneTorsionAngleFeatures
)
test_move()
(in
LoopMoverGroup
)
torsion_scale_factor()
(in
SymMinimizerMap
)
type_name()
(in
ProteinBackboneTorsionAngleFeaturesCreator
)
test_move()
(in
PrepareForCentroid
)
torsion_type_begin()
(in
MoveMap
)
type_name()
(in
ProteinBondGeometryFeatures
)
test_move()
(in
PrepareForFullatom
)
torsion_type_end()
(in
MoveMap
)
type_name()
(in
ProteinBondGeometryFeaturesCreator
)
test_move()
(in
FastGapMover
)
torsional_derivative_from_cartesian_derivatives()
(in
rosetta.core.optimization._core_optimization_
)
type_name()
(in
ProteinRMSDFeatures
)
test_move()
(in
LoopHashDiversifier
)
TorsionAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
type_name()
(in
ProteinRMSDFeaturesCreator
)
test_move()
(in
LoopHashLibrary
)
TorsionBin
(in
rosetta.protocols.comparative_modeling.features._protocols_comparative_modeling_features_
)
type_name()
(in
ProteinRMSDNoSuperpositionFeatures
)
test_move()
(in
LoopHashMoverWrapper
)
TorsionBinIO
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
)
type_name()
(in
ProteinRMSDNoSuperpositionFeaturesCreator
)
test_move()
(in
LoopHashRelaxProtocol
)
TorsionBinIOAP
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
)
type_name()
(in
ProteinResidueConformationFeatures
)
test_move()
(in
Mover_LoopHashRefine
)
TorsionBinIOCAP
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
)
type_name()
(in
ProteinResidueConformationFeaturesCreator
)
test_move()
(in
FoldTreeFromLoops
)
TorsionBinSimilarity
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
type_name()
(in
ProtocolFeatures
)
test_move()
(in
CCDLoopClosureMover
)
TorsionBinSimilarityAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
type_name()
(in
RadiusOfGyrationFeatures
)
test_move()
(in
FASelectSlidingWindowLoopClosure
)
TorsionBinSimilarityCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
type_name()
(in
RadiusOfGyrationFeaturesCreator
)
test_move()
(in
SlidingWindowLoopClosure
)
TorsionCAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
type_name()
(in
ResidueBurialFeatures
)
test_move()
(in
WidthFirstSlidingWindowLoopClosure
)
TorsionClaim
(in
rosetta.protocols.environment.claims._protocols_environment_claims_
)
type_name()
(in
ResidueBurialFeaturesCreator
)
test_move()
(in
KinematicMover
)
TorsionClaimAP
(in
rosetta.protocols.environment.claims._protocols_environment_claims_
)
type_name()
(in
ResidueConformationFeatures
)
test_move()
(in
KinematicWrapper
)
TorsionClaimCAP
(in
rosetta.protocols.environment.claims._protocols_environment_claims_
)
type_name()
(in
ResidueConformationFeaturesCreator
)
test_move()
(in
LoopCM
)
TorsionCreator
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
type_name()
(in
ResidueFeatures
)
test_move()
(in
LoopRefineInnerCycle
)
TorsionCreatorAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
type_name()
(in
ResidueFeaturesCreator
)
test_move()
(in
LoopRefineInnerCycleContainer
)
TorsionCreatorCAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
type_name()
(in
ResidueGridScoresFeatures
)
test_move()
(in
RepackTrial
)
TorsionDOFMover
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
type_name()
(in
ResidueGridScoresFeaturesCreator
)
test_move()
(in
ShearMinCCDTrial
)
TorsionDOFMoverAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
type_name()
(in
ResidueScoresFeatures
)
test_move()
(in
SmallMinCCDTrial
)
TorsionDOFMoverCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
type_name()
(in
ResidueScoresFeaturesCreator
)
test_move()
(in
MakeRotLibMover
)
TorsionFeature
(in
rosetta.protocols.comparative_modeling.features._protocols_comparative_modeling_features_
)
type_name()
(in
ResidueSecondaryStructureFeatures
)
test_move()
(in
MatcherMover
)
TorsionFeatureAP
(in
rosetta.protocols.comparative_modeling.features._protocols_comparative_modeling_features_
)
type_name()
(in
ResidueSecondaryStructureFeaturesCreator
)
test_move()
(in
ExtractSubposeMover
)
TorsionFeatureCAP
(in
rosetta.protocols.comparative_modeling.features._protocols_comparative_modeling_features_
)
type_name()
(in
ResidueTotalScoresFeatures
)
test_move()
(in
MatDesGreedyOptMutationMover
)
TorsionFourierComponent
(in
rosetta.core.scoring.dna._core_scoring_dna_
)
type_name()
(in
ResidueTotalScoresFeaturesCreator
)
test_move()
(in
SchemePlaceMotifsMover
)
TorsionFourierComponentAP
(in
rosetta.core.scoring.dna._core_scoring_dna_
)
type_name()
(in
ResidueTypesFeatures
)
test_move()
(in
SymDofMover
)
TorsionFourierComponentCAP
(in
rosetta.core.scoring.dna._core_scoring_dna_
)
type_name()
(in
ResidueTypesFeaturesCreator
)
test_move()
(in
CartesianMD
)
TorsionFragment
(in
rosetta.protocols.frags._protocols_frags_
)
type_name()
(in
RotamerBoltzmannWeightFeatures
)
test_move()
(in
MDBase
)
TorsionFragmentAP
(in
rosetta.protocols.frags._protocols_frags_
)
type_name()
(in
RotamerBoltzmannWeightFeaturesCreator
)
test_move()
(in
MedalExchangeMover
)
TorsionFragmentCAP
(in
rosetta.protocols.frags._protocols_frags_
)
type_name()
(in
RotamerFeatures
)
test_move()
(in
MedalMover
)
TorsionFragmentLibrary
(in
rosetta.protocols.frags._protocols_frags_
)
type_name()
(in
RotamerFeaturesCreator
)
test_move()
(in
AddMPLigandMover
)
TorsionFragmentLibraryAP
(in
rosetta.protocols.frags._protocols_frags_
)
type_name()
(in
RotamerRecoveryFeatures
)
test_move()
(in
AddMembraneMover
)
TorsionFragmentLibraryCAP
(in
rosetta.protocols.frags._protocols_frags_
)
type_name()
(in
RotamerRecoveryFeaturesCreator
)
test_move()
(in
FlipMover
)
TorsionFragmentMover
(in
rosetta.protocols.frags._protocols_frags_
)
type_name()
(in
RuntimeFeatures
)
test_move()
(in
MembranePositionFromTopologyMover
)
TorsionFragmentMoverAP
(in
rosetta.protocols.frags._protocols_frags_
)
type_name()
(in
RuntimeFeaturesCreator
)
test_move()
(in
RandomPositionRotationMover
)
TorsionFragmentMoverCAP
(in
rosetta.protocols.frags._protocols_frags_
)
type_name()
(in
SaltBridgeFeatures
)
test_move()
(in
RandomPositionTranslationMover
)
TorsionID
(in
rosetta.core.id._core_id_
)
type_name()
(in
SaltBridgeFeaturesCreator
)
test_move()
(in
RotationMover
)
TorsionID_Range
(in
rosetta.core.id._core_id_
)
type_name()
(in
ScoreFunctionFeatures
)
test_move()
(in
SetMembraneCenterMover
)
TorsionID_RangeAP
(in
rosetta.core.id._core_id_
)
type_name()
(in
ScoreFunctionFeaturesCreator
)
test_move()
(in
SetMembraneNormalMover
)
TorsionID_RangeCAP
(in
rosetta.core.id._core_id_
)
type_name()
(in
ScoreTypeFeatures
)
test_move()
(in
SetMembranePositionMover
)
TorsionIDAP
(in
rosetta.core.id._core_id_
)
type_name()
(in
ScoreTypeFeaturesCreator
)
test_move()
(in
TransformIntoMembraneMover
)
TorsionIDCAP
(in
rosetta.core.id._core_id_
)
type_name()
(in
ScreeningFeatures
)
test_move()
(in
TranslationMover
)
TorsionNormalModeMover
(in
rosetta.protocols.normalmode._protocols_normalmode_
)
type_name()
(in
ScreeningFeaturesCreator
)
test_move()
(in
TranslationRotationMover
)
TorsionNormalModeMoverAP
(in
rosetta.protocols.normalmode._protocols_normalmode_
)
type_name()
(in
SecondaryStructureSegmentFeatures
)
test_move()
(in
SymmetricAddMembraneMover
)
TorsionNormalModeMoverCAP
(in
rosetta.protocols.normalmode._protocols_normalmode_
)
type_name()
(in
SecondaryStructureSegmentFeaturesCreator
)
test_move()
(in
VisualizeEmbeddingMover
)
TorsionRange
(in
rosetta.protocols.make_rot_lib._protocols_make_rot_lib_
)
type_name()
(in
SmotifFeatures
)
test_move()
(in
VisualizeMembraneMover
)
TorsionRangeAP
(in
rosetta.protocols.make_rot_lib._protocols_make_rot_lib_
)
type_name()
(in
SmotifFeaturesCreator
)
test_move()
(in
ZincHeterodimerMover
)
TorsionRangeCAP
(in
rosetta.protocols.make_rot_lib._protocols_make_rot_lib_
)
type_name()
(in
StructureFeatures
)
test_move()
(in
MotifGraftMover
)
TorsionRestrictedKinematicPerturber
(in
rosetta.protocols.loops.loop_closure.kinematic_closure._protocols_loops_loop_closure_kinematic_closure_
)
type_name()
(in
StructureFeaturesCreator
)
test_move()
(in
MotifDnaPacker
)
TorsionRestrictedKinematicPerturberAP
(in
rosetta.protocols.loops.loop_closure.kinematic_closure._protocols_loops_loop_closure_kinematic_closure_
)
type_name()
(in
StructureScoresFeatures
)
test_move()
(in
CompositionMover
)
TorsionRestrictedKinematicPerturberCAP
(in
rosetta.protocols.loops.loop_closure.kinematic_closure._protocols_loops_loop_closure_kinematic_closure_
)
type_name()
(in
StructureScoresFeaturesCreator
)
test_move()
(in
CycleMover
)
torsions()
(in
FullAtomRNA_Fragments
)
type_name()
(in
TaskOperationFeatures
)
test_move()
(in
CyclicMover
)
TorsionSamplingKinematicPerturber
(in
rosetta.protocols.loops.loop_closure.kinematic_closure._protocols_loops_loop_closure_kinematic_closure_
)
type_name()
(in
TaskOperationFeaturesCreator
)
test_move()
(in
DsspMover
)
TorsionSamplingKinematicPerturberAP
(in
rosetta.protocols.loops.loop_closure.kinematic_closure._protocols_loops_loop_closure_kinematic_closure_
)
type_name()
(in
TotalScoreFeatures
)
test_move()
(in
FilterMover
)
TorsionSamplingKinematicPerturberCAP
(in
rosetta.protocols.loops.loop_closure.kinematic_closure._protocols_loops_loop_closure_kinematic_closure_
)
type_name()
(in
TotalScoreFeaturesCreator
)
test_move()
(in
FilterReporterMover
)
TorsionSet
(in
rosetta.protocols.farna._protocols_farna_
)
type_name()
(in
TrajectoryMapFeatures
)
test_move()
(in
IfMover
)
TorsionSetAP
(in
rosetta.protocols.farna._protocols_farna_
)
type_name()
(in
TrajectoryMapFeaturesCreator
)
test_move()
(in
IteratedConvergenceMover
)
TorsionSetCAP
(in
rosetta.protocols.farna._protocols_farna_
)
type_name()
(in
UnrecognizedAtomFeatures
)
test_move()
(in
JumpOutMover
)
TorsionSetMover
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
type_name()
(in
UnrecognizedAtomFeaturesCreator
)
test_move()
(in
MCShowMover
)
TorsionSetMoverAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
type_name()
(in
WaterFeatures
)
test_move()
(in
MonteCarloUtil
)
TorsionSetMoverCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
type_name()
(in
WaterFeaturesCreator
)
test_move()
(in
MoveMapMover
)
TorsionSweepingKinematicPerturber
(in
rosetta.protocols.loops.loop_closure.kinematic_closure._protocols_loops_loop_closure_kinematic_closure_
)
type_name()
(in
ConcurrencyTest
)
test_move()
(in
Mover
)
TorsionSweepingKinematicPerturberAP
(in
rosetta.protocols.loops.loop_closure.kinematic_closure._protocols_loops_loop_closure_kinematic_closure_
)
type_name()
(in
ConcurrencyTestCreator
)
test_move()
(in
MoverApplyingMover
)
TorsionSweepingKinematicPerturberCAP
(in
rosetta.protocols.loops.loop_closure.kinematic_closure._protocols_loops_loop_closure_kinematic_closure_
)
type_name()
(in
HelixBundleFeatures
)
test_move()
(in
MoverContainer
)
TorsionType
(in
rosetta.core.id._core_id_
)
type_name()
(in
HelixBundleFeaturesCreator
)
test_move()
(in
MoverForPoseList
)
tot_score()
(in
XformScore
)
type_name()
(in
SandwichFeatures
)
test_move()
(in
NullMover
)
TOTAL
(in
rosetta.basic
)
type_name()
(in
SandwichFeaturesCreator
)
test_move()
(in
PDBDumpMover
)
TOTAL
(in
ProfTag
)
type_name()
(in
StrandBundleFeatures
)
test_move()
(in
ProfilerMover
)
TOTAL
(in
rosetta.basic._basic_
)
type_name()
(in
StrandBundleFeaturesCreator
)
test_move()
(in
PyMolMover
)
total
(in
InterfaceRegion
)
type_name()
(in
Contact
)
test_move()
(in
RampingMover
)
total
(in
rosetta.protocols.analysis._protocols_analysis_
)
type_name()
(in
BaseJumpSetup
)
test_move()
(in
RandomMover
)
total
(in
rosetta.protocols.analysis
)
type_name()
(in
JumpSelector
)
test_move()
(in
RepeatMover
)
total()
(in
DistanceHistogram
)
type_name()
(in
JumpSetup
)
test_move()
(in
SequenceMover
)
total_accepts()
(in
ArchiveBase
)
type_name()
(in
JumpsFromAllPairings
)
test_move()
(in
StructureRestrictor
)
total_atoms()
(in
Pose
)
type_name()
(in
ResiduePairJumpSetup
)
test_move()
(in
TrialMover
)
total_counts()
(in
MultiDimensionalHistogram
)
type_name()
(in
SheetBuilder
)
test_move()
(in
VectorPoseMover
)
total_embed()
(in
Embedding
)
type_name()
(in
RDFBinaryHbondCreator
)
test_move()
(in
WhileMover
)
total_energies()
(in
Energies
)
type_name()
(in
RDFBinaryOrbitalFunctionCreator
)
test_move()
(in
StructAvrgMover
)
total_energy()
(in
SimpleInteractionGraph
)
type_name()
(in
RDFChargeCreator
)
test_move()
(in
NcbbDockDesignProtocol
)
total_energy()
(in
Energies
)
type_name()
(in
RDFElecCreator
)
test_move()
(in
OopCreatorMover
)
total_energy()
(in
LoopGraph
)
type_name()
(in
RDFEtableCreator
)
test_move()
(in
OopDockDesignProtocol
)
total_energy()
(in
SAXSEnergy
)
type_name()
(in
RDFFunctionCreator
)
test_move()
(in
CartesianNormalModeMover
)
total_energy_from_pose()
(in
rosetta.core.pose._core_pose_
)
type_name()
(in
RDFHbondCreator
)
test_move()
(in
NormalModeMinimizer
)
total_net_change_in_rama_score_over_range()
(in
RamaCheckBase
)
type_name()
(in
RDFOrbitalFunctionCreator
)
test_move()
(in
NormalModeRelaxMover
)
total_nr_jobs()
(in
JobDistributor
)
type_name()
(in
LoopsDatabaseDefinerCreator
)
test_move()
(in
TorsionNormalModeMover
)
TOTAL_NUM_CRITERIA
(in
rosetta.core.conformation.symmetry
)
type_name()
(in
LoopsDefinerCreator
)
test_move()
(in
SetupPoissonBoltzmannPotential
)
TOTAL_NUM_CRITERIA
(in
SlideCriteriaType
)
type_name()
(in
LoopsExplicitDefinerCreator
)
test_move()
(in
AddChainBreak
)
TOTAL_NUM_CRITERIA
(in
rosetta.core.conformation.symmetry._core_conformation_symmetry_
)
type_name()
(in
LoopsFileDefinerCreator
)
test_move()
(in
AddSidechainConstraintsToHotspots
)
total_number_abego()
(in
ABEGOManager
)
type_name()
(in
RRComparerAutomorphicRMSDCreator
)
test_move()
(in
BackrubDDMover
)
total_proposed()
(in
ArchiveBase
)
type_name()
(in
RRComparerChiDiffCreator
)
test_move()
(in
BestHotspotCstMover
)
total_residue()
(in
SecondaryStructure
)
type_name()
(in
RRComparerCreator
)
test_move()
(in
BuildAlaPose
)
total_residue()
(in
ResidueCoordinateChangeList
)
type_name()
(in
RRComparerElecDensDiffCreator
)
test_move()
(in
DesignMinimizeHbonds
)
total_residue()
(in
ContinuousRotamerSets
)
type_name()
(in
RRComparerRotBinsCreator
)
test_move()
(in
DisulfideMover
)
total_residue()
(in
FixbbRotamerSets
)
type_name()
(in
RRProtocolCreator
)
test_move()
(in
DockAndRetrieveSidechains
)
total_residue()
(in
RotamerSets
)
type_name()
(in
RRProtocolMinPackCreator
)
test_move()
(in
DockWithHotspotMover
)
total_residue()
(in
RotamerSetsBase
)
type_name()
(in
RRProtocolMoverCreator
)
test_move()
(in
FavorNativeResiduePreCycle
)
total_residue()
(in
RotamerSubsets
)
type_name()
(in
RRProtocolPackRotamersCreator
)
test_move()
(in
FavorNonNativeResiduePreCycle
)
total_residue()
(in
UnboundRotamersOperation
)
type_name()
(in
RRProtocolRTMinCreator
)
test_move()
(in
HotspotDisjointedFoldTreeMover
)
total_residue()
(in
PackerTask
)
type_name()
(in
RRProtocolReferenceStructureCreator
)
test_move()
(in
HotspotHasherMover
)
total_residue()
(in
PackerTask_
)
type_name()
(in
RRProtocolRelaxCreator
)
test_move()
(in
InterfaceRecapitulationMover
)
total_residue()
(in
MiniPose
)
type_name()
(in
RRProtocolRotamerTrialsCreator
)
test_move()
(in
LoopFinder
)
total_residue()
(in
Pose
)
type_name()
(in
RRReporterCreator
)
test_move()
(in
LoopLengthChange
)
total_residue()
(in
TrieCollection
)
type_name()
(in
RRReporterHumanCreator
)
test_move()
(in
LoopMoverFromCommandLine
)
total_residue()
(in
FlexbbRotamerSets
)
type_name()
(in
RRReporterSQLiteCreator
)
test_move()
(in
LoopOver
)
total_residue()
(in
BluePrint
)
type_name()
(in
RRReporterSimpleCreator
)
test_move()
(in
LoopRemodel
)
total_residue()
(in
JumpSample
)
type_name()
(in
CamShiftEvaluatorCreator
)
test_move()
(in
MapHotspot
)
total_residue()
(in
JumpSetup
)
type_name()
(in
ChiWellRmsdEvaluatorCreator
)
test_move()
(in
PatchdockTransform
)
total_residue()
(in
ResiduePairJumpSetup
)
type_name()
(in
ContactMapEvaluatorCreator
)
test_move()
(in
PeptideStapleDesignMover
)
total_residue()
(in
SameStrand
)
type_name()
(in
ExtraScoreEvaluatorCreator
)
test_move()
(in
PlaceOnLoop
)
total_residue()
(in
SheetBuilder
)
type_name()
(in
JScoreEvaluatorCreator
)
test_move()
(in
PlaceSimultaneouslyMover
)
total_residue_wolig()
(in
BluePrint
)
type_name()
(in
JumpNrEvaluatorCreator
)
test_move()
(in
PlaceStubMover
)
total_score
(in
ScoreType
)
type_name()
(in
NativeEvaluatorCreator
)
test_move()
(in
PlacementAuctionMover
)
total_score
(in
rosetta.core.scoring._core_scoring_
)
type_name()
(in
PalesEvaluatorCreator
)
test_move()
(in
PlacementMinimizationMover
)
total_score
(in
rosetta.core.scoring
)
type_name()
(in
PoolEvaluatorCreator
)
test_move()
(in
PrepackMover
)
total_score
(in
rosetta
)
type_name()
(in
PredictedBurialFnEvaluatorCreator
)
test_move()
(in
ProteinInterfaceMultiStateDesignMover
)
total_score()
(in
FragmentPicker
)
type_name()
(in
RdcEvaluatorCreator
)
test_move()
(in
RandomMutation
)
total_score()
(in
FragmentScoreManager
)
type_name()
(in
RdcSelectEvaluatorCreator
)
test_move()
(in
RepackMinimize
)
total_score_of_last_considered_pose()
(in
MonteCarlo
)
type_name()
(in
RdcTargetEvaluatorCreator
)
test_move()
(in
SaveAndRetrieveSidechains
)
total_size()
(in
ABEGO_SS_Pool
)
type_name()
(in
RmsdEvaluatorCreator
)
test_move()
(in
SetAtomTree
)
total_size()
(in
QuotaPool
)
type_name()
(in
RmsdTargetEvaluatorCreator
)
test_move()
(in
SetTemperatureFactor
)
total_size()
(in
SecondaryStructurePool
)
type_name()
(in
StructureSimilarityEvaluatorCreator
)
test_move()
(in
SetupHotspotConstraintsLoopsMover
)
total_trials()
(in
ClassicAbinitio
)
type_name()
(in
ChemicalShiftEvaluatorCreator
)
test_move()
(in
SetupHotspotConstraintsMover
)
total_trials()
(in
MembraneAbinitio
)
type_set_tag()
(in
SwitchResidueTypeSetMover
)
test_move()
(in
ShoveResidueMover
)
total_trials()
(in
MonteCarlo
)
TypeDifference
(in
GasteigerAtomTypeData
)
test_move()
(in
SpinMover
)
total_trials()
(in
TrialCounter
)
types()
(in
Patch
)
test_move()
(in
SubroutineMover
)
TotalSasaFilter
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
test_move()
(in
TaskAwareCsts
)
TotalSasaFilterAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
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