Package rosetta :: Package protocols :: Package seeded_abinitio :: Module _protocols_seeded_abinitio_
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Module _protocols_seeded_abinitio_

Classes [hide private]
  CAcstGenerator
protocols/seeded_abinitio/CAcstGenerator.hh:32
  CAcstGeneratorAP
  CAcstGeneratorCAP
  CAcstGeneratorCreator
protocols/seeded_abinitio/CAcstGeneratorCreator.hh:23
  CAcstGeneratorCreatorAP
  CAcstGeneratorCreatorCAP
  CloseFold
protocols/seeded_abinitio/CloseFold.hh:36
  CloseFoldAP
  CloseFoldCAP
  CloseFoldCreator
protocols/seeded_abinitio/CloseFoldCreator.hh:23
  CloseFoldCreatorAP
  CloseFoldCreatorCAP
  CoordinateCst
protocols/seeded_abinitio/CoordinateCst.hh:29
  CoordinateCstAP
  CoordinateCstCAP
  CoordinateCstCreator
protocols/seeded_abinitio/CoordinateCstCreator.hh:22
  CoordinateCstCreatorAP
  CoordinateCstCreatorCAP
  DefineMovableLoops
protocols/seeded_abinitio/DefineMovableLoops.hh:31
  DefineMovableLoopsAP
  DefineMovableLoopsCAP
  DefineMovableLoopsCreator
protocols/seeded_abinitio/DefineMovableLoopsCreator.hh:23
  DefineMovableLoopsCreatorAP
  DefineMovableLoopsCreatorCAP
  GrowPeptides
protocols/seeded_abinitio/GrowPeptides.hh:33
  GrowPeptidesAP
  GrowPeptidesCAP
  GrowPeptidesCreator
protocols/seeded_abinitio/GrowPeptidesCreator.hh:22
  GrowPeptidesCreatorAP
  GrowPeptidesCreatorCAP
  SeedFoldTree
protocols/seeded_abinitio/SeedFoldTree.hh:36
  SeedFoldTreeAP
  SeedFoldTreeCAP
  SeedFoldTreeCreator
protocols/seeded_abinitio/SeedFoldTreeCreator.hh:22
  SeedFoldTreeCreatorAP
  SeedFoldTreeCreatorCAP
  SeedSetupMover
protocols/seeded_abinitio/SeedSetupMover.hh:33
  SeedSetupMoverAP
  SeedSetupMoverCAP
  SeedSetupMoverCreator
protocols/seeded_abinitio/SeedSetupMoverCreator.hh:24
  SeedSetupMoverCreatorAP
  SeedSetupMoverCreatorCAP
  SegmentHybridizer
protocols/seeded_abinitio/SegmentHybridizer.hh:36
  SegmentHybridizerAP
  SegmentHybridizerCAP
  SegmentHybridizerCreator
protocols/seeded_abinitio/SegmentHybridizerCreator.hh:24
  SegmentHybridizerCreatorAP
  SegmentHybridizerCreatorCAP
  SingletonBase_T_core_chemical_ChemicalManager_T
SingletonBase is meant to serve as a base class for singleton classes in Rosetta handling the initialization of the singleton in a thread-safe way.
  SingletonBase_T_core_chemical_ChemicalManager_TAP
  SingletonBase_T_core_chemical_ChemicalManager_TCAP
  SwapSegment
protocols/seeded_abinitio/SwapSegment.hh:30
  SwapSegmentAP
  SwapSegmentCAP
  SwapSegmentCreator
protocols/seeded_abinitio/SwapSegmentCreator.hh:23
  SwapSegmentCreatorAP
  SwapSegmentCreatorCAP
  __CPP_CAcstGeneratorCreator__
  __CPP_CAcstGenerator__
  __CPP_CloseFoldCreator__
  __CPP_CloseFold__
  __CPP_CoordinateCstCreator__
  __CPP_CoordinateCst__
  __CPP_DefineMovableLoopsCreator__
  __CPP_DefineMovableLoops__
  __CPP_GrowPeptidesCreator__
  __CPP_GrowPeptides__
  __CPP_SeedFoldTreeCreator__
  __CPP_SeedFoldTree__
  __CPP_SeedSetupMoverCreator__
  __CPP_SeedSetupMover__
  __CPP_SegmentHybridizerCreator__
  __CPP_SegmentHybridizer__
  __CPP_SwapSegmentCreator__
  __CPP_SwapSegment__
Functions [hide private]
 
adjust_mm_to_length(...)
adjust_mm_to_length( (Pose)pose, (MoveMap)mm) -> None : to readjust the move map after length changes
 
combine_two_poses(...)
combine_two_poses( (Pose)design_pose, (Pose)target_chain) -> None : protocols/seeded_abinitio/SeededAbinitio_util.hh:65
 
parse_seeds(...)
parse_seeds( (Pose)pose, (vector1_pair_string_string)seed_vector) -> Loops : for runtime parsing of seeds
 
superposition_transform(...)
superposition_transform( (vector1_xyzVector_Real)init_coords, (vector1_xyzVector_Real)ref_coords, (xyzMatrix_Real)rotation, (xyzVector_Real)toCenter, (xyzVector_Real)toFitCenter) -> None : protocols/seeded_abinitio/util.hh:51
Variables [hide private]
  __package__ = None
Function Details [hide private]

adjust_mm_to_length(...)

 

adjust_mm_to_length( (Pose)pose, (MoveMap)mm) -> None :
    to readjust the move map after length changes
    

    C++ signature :
        void adjust_mm_to_length(core::pose::Pose,boost::shared_ptr<core::kinematics::MoveMap> {lvalue})

combine_two_poses(...)

 

combine_two_poses( (Pose)design_pose, (Pose)target_chain) -> None :
    protocols/seeded_abinitio/SeededAbinitio_util.hh:65

    C++ signature :
        void combine_two_poses(core::pose::Pose,boost::shared_ptr<core::pose::Pose>)

parse_seeds(...)

 

parse_seeds( (Pose)pose, (vector1_pair_string_string)seed_vector) -> Loops :
    for runtime parsing of seeds
    

    C++ signature :
        protocols::loops::Loops parse_seeds(core::pose::Pose,utility::vector1<std::pair<std::string, std::string>, std::allocator<std::pair<std::string, std::string> > >)

superposition_transform(...)

 

superposition_transform( (vector1_xyzVector_Real)init_coords, (vector1_xyzVector_Real)ref_coords, (xyzMatrix_Real)rotation, (xyzVector_Real)toCenter, (xyzVector_Real)toFitCenter) -> None :
    protocols/seeded_abinitio/util.hh:51

    C++ signature :
        void superposition_transform(utility::vector1<numeric::xyzVector<double>, std::allocator<numeric::xyzVector<double> > > {lvalue},utility::vector1<numeric::xyzVector<double>, std::allocator<numeric::xyzVector<double> > > {lvalue},numeric::xyzMatrix<double> {lvalue},numeric::xyzVector<double> {lvalue},numeric::xyzVector<double> {lvalue})