Package rosetta :: Package protocols :: Package loops :: Package loop_closure :: Package ccd :: Module _protocols_loops_loop_closure_ccd_

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Module _protocols_loops_loop_closure_ccd_

Classes

[hide private]

CCDLoopClosureMover
Close a loop (protein or otherwise) using bi-directional Cyclic Coordinate Descent This class was initially a wrapper for fast_ccd_loop_closure(), an exposed method in ccd_closure.cc.

CCDLoopClosureMoverAP

CCDLoopClosureMoverCAP

CCDLoopClosureMoverCreator
%CCDLoopClosureMoverCreator allows the MoverFactory to create a CCDLoopClosureMover instance.

CCDLoopClosureMoverCreatorAP

CCDLoopClosureMoverCreatorCAP

ChainDirection
protocols/loops/loop_closure/ccd/CCDLoopClosureMover.hh:45

FASelectSlidingWindowLoopClosure
protocols/loops/loop_closure/ccd/FASelectSlidingWindowLoopClosure.hh:65

FASelectSlidingWindowLoopClosureAP

FASelectSlidingWindowLoopClosureCAP

LoopClosure
protocols/loops/loop_closure/ccd/LoopClosure.hh:59

LoopClosureAP

LoopClosureCAP

RamaCheck1B
protocols/loops/loop_closure/ccd/RamaCheck.hh:171

RamaCheck1BAP

RamaCheck1BCAP

RamaCheck2B
protocols/loops/loop_closure/ccd/RamaCheck.hh:211

RamaCheck2BAP

RamaCheck2BCAP

RamaCheckBase
protocols/loops/loop_closure/ccd/RamaCheck.hh:42

RamaCheckBaseAP

RamaCheckBaseCAP

SecondaryStructureType
protocols/loops/loop_closure/ccd/CCDLoopClosureMover.hh:53

ShortLoopClosure
protocols/loops/loop_closure/ccd/ShortLoopClosure.hh:34

ShortLoopClosureAP

ShortLoopClosureCAP

SlidingWindowLoopClosure
protocols/loops/loop_closure/ccd/SlidingWindowLoopClosure.hh:67

SlidingWindowLoopClosureAP

SlidingWindowLoopClosureCAP

WidthFirstSlidingWindowLoopClosure
@detail it will switch between different windows.

WidthFirstSlidingWindowLoopClosureAP

WidthFirstSlidingWindowLoopClosureCAP

__CPP_CCDLoopClosureMoverCreator__

__CPP_CCDLoopClosureMover__

__CPP_FASelectSlidingWindowLoopClosure__

__CPP_LoopClosure__

__CPP_RamaCheck1B__

__CPP_RamaCheck2B__

__CPP_RamaCheckBase__

__CPP_ShortLoopClosure__

__CPP_SlidingWindowLoopClosure__

__CPP_WidthFirstSlidingWindowLoopClosure__

Functions

[hide private]

get_deviation(...)
get_deviation( (Pose)pose, (int)cutpoint) -> pair_Real_Real : protocols/loops/loop_closure/ccd/ccd_closure.hh:31

Variables

[hide private]

__package__ = None

backward = rosetta.protocols.loops.loop_closure.ccd._protocols...

coil = rosetta.protocols.loops.loop_closure.ccd._protocols_loo...

forward = rosetta.protocols.loops.loop_closure.ccd._protocols_...

helix = rosetta.protocols.loops.loop_closure.ccd._protocols_lo...

n_chain_directions = rosetta.protocols.loops.loop_closure.ccd....

n_secondary_structure_types = rosetta.protocols.loops.loop_clo...

strand = rosetta.protocols.loops.loop_closure.ccd._protocols_l...

Function Details

[hide private]

get_deviation(...)


get_deviation( (Pose)pose, (int)cutpoint) -> pair_Real_Real :
    protocols/loops/loop_closure/ccd/ccd_closure.hh:31

    C++ signature :
        std::pair<double, double> get_deviation(core::pose::Pose,unsigned long)

Variables Details

[hide private]

backward

Value:

rosetta.protocols.loops.loop_closure.ccd._protocols_loops_loop_closure
_ccd_.ChainDirection.backward

coil

Value:

rosetta.protocols.loops.loop_closure.ccd._protocols_loops_loop_closure
_ccd_.SecondaryStructureType.coil

forward

Value:

rosetta.protocols.loops.loop_closure.ccd._protocols_loops_loop_closure
_ccd_.ChainDirection.forward

helix

Value:

rosetta.protocols.loops.loop_closure.ccd._protocols_loops_loop_closure
_ccd_.SecondaryStructureType.helix

n_chain_directions

Value:

rosetta.protocols.loops.loop_closure.ccd._protocols_loops_loop_closure
_ccd_.ChainDirection.n_chain_directions

n_secondary_structure_types

Value:

rosetta.protocols.loops.loop_closure.ccd._protocols_loops_loop_closure
_ccd_.SecondaryStructureType.n_secondary_structure_types

strand

Value:

rosetta.protocols.loops.loop_closure.ccd._protocols_loops_loop_closure
_ccd_.SecondaryStructureType.strand