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I
I
(in
rosetta.protocols.abinitio.abscript
)
info()
(in
AlignChainMover
)
interaction_graph
(in
rosetta.protocols.flexpack
)
I
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
info()
(in
BBConRotMover
)
InteractionGraphBase
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
I
(in
StageID
)
info()
(in
BBG8T3AMover
)
InteractionGraphBaseAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
I()
(in
Quaternion_Real
)
info()
(in
BBGaussianMover
)
InteractionGraphBaseCAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
I()
(in
Quaternion_double
)
info()
(in
BackboneMover
)
InteractionGraphFactory
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
I()
(in
Quaternion_float
)
info()
(in
BoltzmannRotamerMover
)
InteractionGraphFactoryAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
I()
(in
xyzMatrix_Real
)
info()
(in
ChainSplitMover
)
InteractionGraphFactoryCAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
I()
(in
xyzMatrix_SSize
)
info()
(in
ChangeAndResetFoldTreeMover
)
InteratomicVarianceMatrix
(in
rosetta.protocols.toolbox._protocols_toolbox_
)
I()
(in
xyzMatrix_Size
)
info()
(in
ClearConstraintsMover
)
InteratomicVarianceMatrixAP
(in
rosetta.protocols.toolbox._protocols_toolbox_
)
I()
(in
xyzMatrix_T_float_T
)
info()
(in
CombinePoseMover
)
InteratomicVarianceMatrixCAP
(in
rosetta.protocols.toolbox._protocols_toolbox_
)
I()
(in
xyzMatrix_double
)
info()
(in
ConsensusDesignMover
)
InterbondAngleScore
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
I()
(in
xyzMatrix_float
)
info()
(in
ConstrainToIdealMover
)
InterbondAngleScoreAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
i()
(in
BasePairStep
)
info()
(in
ConstraintSetMover
)
InterbondAngleScoreCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
i()
(in
Contact
)
info()
(in
ContingentAcceptMover
)
intercept()
(in
HolesParams
)
i2()
(in
GoapRsdType
)
info()
(in
CopyDofMover
)
interchain_contact
(in
ScoreType
)
i3()
(in
GoapRsdType
)
info()
(in
CoupledMover
)
interchain_contact
(in
rosetta.core.scoring._core_scoring_
)
i_next()
(in
BasePairStep
)
info()
(in
CutChainMover
)
interchain_contact
(in
rosetta.core.scoring
)
i_to_a()
(in
NormalMode
)
info()
(in
CyclizationMover
)
interchain_contact
(in
rosetta
)
IC_RefineCCDStandard
(in
rosetta.protocols.loops.loop_mover.refine
)
info()
(in
DME_FilterMover
)
interchain_env
(in
ScoreType
)
IC_RefineCCDStandard
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
info()
(in
DeleteChainsMover
)
interchain_env
(in
rosetta.core.scoring._core_scoring_
)
IC_RefineCCDStandard
(in
LoopRefineInnerCycleName
)
info()
(in
DesignRepackMover
)
interchain_env
(in
rosetta.core.scoring
)
IC_RepackTrial
(in
rosetta.protocols.loops.loop_mover.refine
)
info()
(in
DisulfideInsertionMover
)
interchain_env
(in
rosetta
)
IC_RepackTrial
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
info()
(in
DumpPdb
)
interchain_pair
(in
ScoreType
)
IC_RepackTrial
(in
LoopRefineInnerCycleName
)
info()
(in
EnergyCutRotamerTrialsMinMover
)
interchain_pair
(in
rosetta.core.scoring._core_scoring_
)
IC_ShearMinCCDTrial
(in
rosetta.protocols.loops.loop_mover.refine
)
info()
(in
EnergyCutRotamerTrialsMover
)
interchain_pair
(in
rosetta.core.scoring
)
IC_ShearMinCCDTrial
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
info()
(in
ExtendedPoseMover
)
interchain_pair
(in
rosetta
)
IC_ShearMinCCDTrial
(in
LoopRefineInnerCycleName
)
info()
(in
FavorSequenceProfile
)
interchain_vdw
(in
ScoreType
)
IC_SmallMinCCDTrial
(in
rosetta.protocols.loops.loop_mover.refine
)
info()
(in
FavorSymmetricSequence
)
interchain_vdw
(in
rosetta.core.scoring._core_scoring_
)
IC_SmallMinCCDTrial
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
info()
(in
FindConsensusSequence
)
interchain_vdw
(in
rosetta.core.scoring
)
IC_SmallMinCCDTrial
(in
LoopRefineInnerCycleName
)
info()
(in
ForceDisulfidesMover
)
interchain_vdw
(in
rosetta
)
iCode
(in
rosetta
)
info()
(in
GenericMonteCarloMover
)
InterchainEnvEnergy
(in
rosetta.protocols.scoring.methods._protocols_scoring_methods_
)
iCode
(in
LoopConfiguration
)
info()
(in
GreenPacker
)
InterchainEnvEnergyAP
(in
rosetta.protocols.scoring.methods._protocols_scoring_methods_
)
iCode
(in
rosetta.protocols.loops._protocols_loops_
)
info()
(in
LoadPDBMover
)
InterchainEnvEnergyCAP
(in
rosetta.protocols.scoring.methods._protocols_scoring_methods_
)
iCode
(in
rosetta.protocols.loops
)
info()
(in
LoadUnboundRotMover
)
InterchainEnvEnergyCreator
(in
rosetta.protocols.scoring.methods._protocols_scoring_methods_
)
icode()
(in
PDBInfo
)
info()
(in
MSDMover
)
InterchainEnvEnergyCreatorAP
(in
rosetta.protocols.scoring.methods._protocols_scoring_methods_
)
icoor()
(in
Orbital
)
info()
(in
MakePolyXMover
)
InterchainEnvEnergyCreatorCAP
(in
rosetta.protocols.scoring.methods._protocols_scoring_methods_
)
icoor()
(in
ResidueConnection
)
info()
(in
MembraneTopology
)
InterchainPairEnergy
(in
rosetta.protocols.scoring.methods._protocols_scoring_methods_
)
icoor()
(in
ResidueType
)
info()
(in
MinMover
)
InterchainPairEnergyAP
(in
rosetta.protocols.scoring.methods._protocols_scoring_methods_
)
icoor()
(in
Residue
)
info()
(in
MinPackMover
)
InterchainPairEnergyCAP
(in
rosetta.protocols.scoring.methods._protocols_scoring_methods_
)
ICoorAtomID
(in
rosetta.core.chemical._core_chemical_
)
info()
(in
MissingDensityToJumpMover
)
InterchainPairEnergyCreator
(in
rosetta.protocols.scoring.methods._protocols_scoring_methods_
)
ICoorAtomIDAP
(in
rosetta.core.chemical._core_chemical_
)
info()
(in
ModifyVariantTypeMover
)
InterchainPairEnergyCreatorAP
(in
rosetta.protocols.scoring.methods._protocols_scoring_methods_
)
ICoorAtomIDCAP
(in
rosetta.core.chemical._core_chemical_
)
info()
(in
MonteCarloRecover
)
InterchainPairEnergyCreatorCAP
(in
rosetta.protocols.scoring.methods._protocols_scoring_methods_
)
ICoorOrbitalData
(in
rosetta.core.chemical.orbitals._core_chemical_orbitals_
)
info()
(in
MonteCarloReset
)
InterchainPotential
(in
rosetta.protocols.scoring._protocols_scoring_
)
ICoorOrbitalDataAP
(in
rosetta.core.chemical.orbitals._core_chemical_orbitals_
)
info()
(in
MonteCarloTest
)
InterchainPotentialAP
(in
rosetta.protocols.scoring._protocols_scoring_
)
ICoorOrbitalDataCAP
(in
rosetta.core.chemical.orbitals._core_chemical_orbitals_
)
info()
(in
MutateResidue
)
InterchainPotentialCAP
(in
rosetta.protocols.scoring._protocols_scoring_
)
id
(in
rosetta.core
)
info()
(in
O2M_MutateMover
)
interchangeability_group()
(in
ResidueType
)
id()
(in
EnvCore
)
info()
(in
PDBReloadMover
)
interchangeability_group_map()
(in
ResidueTypeSet
)
id()
(in
FragID
)
info()
(in
PSSM2BfactorMover
)
interface
(in
rosetta.protocols
)
id()
(in
VallResidue
)
info()
(in
PackRotamersMover
)
Interface
(in
rosetta.protocols.ligand_docking.ligand_options._protocols_ligand_docking_ligand_options_
)
id()
(in
Atom
)
info()
(in
PackRotamersMoverLazy
)
Interface
(in
rosetta.protocols.scoring._protocols_scoring_
)
id()
(in
Atom_
)
info()
(in
PeptideStapleMover
)
interface()
(in
RestrictDesignToProteinDNAInterface
)
id()
(in
CavityBall
)
info()
(in
PeriodicBoxMover
)
interface()
(in
InterfaceInfo
)
id()
(in
Sequence
)
info()
(in
ProlineFixMover
)
interface_
(in
rosetta.core.scoring
)
id()
(in
ClusteringTreeNode
)
info()
(in
RandomOmegaFlipMover
)
interface_calc()
(in
AnchorMoversData
)
id()
(in
EXCN_Env_Security_Exception
)
info()
(in
RandomTorsionMover
)
interface_dd_pair
(in
ScoreType
)
id()
(in
RemodelConstraintGenerator
)
info()
(in
RepackSidechainsMover
)
interface_dd_pair
(in
rosetta.core.scoring._core_scoring_
)
id()
(in
VallResidue
)
info()
(in
RepeatPropagationMover
)
interface_dd_pair
(in
rosetta.core.scoring
)
id()
(in
Batch
)
info()
(in
ReportEffectivePKA
)
interface_dd_pair
(in
rosetta
)
id()
(in
OptEVariableExpression
)
info()
(in
RepulsiveOnlyMover
)
interface_detection_dis()
(in
AntibodyDesignModeler
)
id()
(in
StepWiseSamplerSized
)
info()
(in
ResetBaselineMover
)
interface_distance_cutoff()
(in
ProteinInterfaceDesignOperation
)
id()
(in
WorkUnitBase
)
info()
(in
ResidueTypeConstraintMover
)
interface_from_pose()
(in
InterchainPotential
)
id()
(in
WorkUnit
)
info()
(in
ReturnSidechainMover
)
INTERFACE_INFO
(in
Enum
)
id_for_current_rotamer()
(in
RotamerSet
)
info()
(in
RingConformationMover
)
INTERFACE_INFO
(in
CacheableDataType
)
id_for_current_rotamer()
(in
RotamerSet_
)
info()
(in
RotamerTrialsMinMover
)
interface_interaction_energy()
(in
RotamerBoltzmannWeight
)
id_for_current_rotamer()
(in
RotamerSubset
)
info()
(in
RotamerTrialsMover
)
interface_nres()
(in
Interface
)
id_for_current_rotamer()
(in
SymmetricRotamerSet_
)
info()
(in
RotamerizeMover
)
interface_nres()
(in
InterfaceInfo
)
id_for_current_rotamer()
(in
FlexbbRotamerSet
)
info()
(in
SaneMinMover
)
interface_number()
(in
SymmetryInfo
)
id_for_resnum()
(in
ResidueAlternativeStepWiseSamplerComb
)
info()
(in
ScoreMover
)
interface_only()
(in
ResPairMotifQuery
)
id_to_index()
(in
PoseBalls
)
info()
(in
SequenceProfileMover
)
interface_radius()
(in
HotspotDisjointedFoldTreeMover
)
id_to_index()
(in
PoseBallsLite
)
info()
(in
SetReturningPackRotamersMover
)
InterfaceAnalyzerMover
(in
rosetta.protocols.analysis._protocols_analysis_
)
idCode()
(in
HeaderInformation
)
info()
(in
SetTorsion
)
InterfaceAnalyzerMoverAP
(in
rosetta.protocols.analysis._protocols_analysis_
)
ideal_bond_length_set()
(in
ChemicalManager
)
info()
(in
ShakeStructureMover
)
InterfaceAnalyzerMoverCAP
(in
rosetta.protocols.analysis._protocols_analysis_
)
ideal_COMs()
(in
rosetta.protocols.forge.remodel._protocols_forge_remodel_'
)
info()
(in
ShearMover
)
InterfaceAnalyzerMoverCreator
(in
rosetta.protocols.analysis._protocols_analysis_
)
ideal_val()
(in
GeomSampleInfo
)
info()
(in
ShortBackrubMover
)
InterfaceAnalyzerMoverCreatorAP
(in
rosetta.protocols.analysis._protocols_analysis_
)
ideal_xyz()
(in
Atom
)
info()
(in
SmallMover
)
InterfaceAnalyzerMoverCreatorCAP
(in
rosetta.protocols.analysis._protocols_analysis_
)
ideal_xyz()
(in
Orbital
)
info()
(in
SuperimposeMover
)
InterfaceAP
(in
rosetta.protocols.ligand_docking.ligand_options._protocols_ligand_docking_ligand_options_
)
IdealBondLengthSet
(in
rosetta.core.chemical._core_chemical_
)
info()
(in
SwitchChainOrderMover
)
InterfaceAP
(in
rosetta.protocols.scoring._protocols_scoring_
)
IdealBondLengthSetAP
(in
rosetta.core.chemical._core_chemical_
)
info()
(in
SwitchResidueTypeSetMover
)
InterfaceBindingEnergyDensityFilter
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
IdealBondLengthSetCAP
(in
rosetta.core.chemical._core_chemical_
)
info()
(in
TailsScoreMover
)
InterfaceBindingEnergyDensityFilterAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
idealize
(in
rosetta.protocols
)
info()
(in
TaskAwareMinMover
)
InterfaceBindingEnergyDensityFilterCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
idealize_combined_pose()
(in
rosetta.protocols.grafting._protocols_grafting_
)
info()
(in
TorsionDOFMover
)
InterfaceBindingEnergyDensityFilterCreator
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
idealize_hydrogens()
(in
rosetta.core.conformation._core_conformation_
)
info()
(in
TorsionSetMover
)
InterfaceBindingEnergyDensityFilterCreatorAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
idealize_insert()
(in
AnchoredGraftMover
)
info()
(in
Tumble
)
InterfaceBindingEnergyDensityFilterCreatorCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
idealize_loop()
(in
rosetta.protocols.loops._protocols_loops_
)
info()
(in
UniformRotationMover
)
InterfaceBuilder
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
idealize_position()
(in
rosetta.core.conformation._core_conformation_
)
info()
(in
UniformTranslationMover
)
InterfaceBuilderAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
idealize_proline_nvs()
(in
CartesianBondedEnergy
)
info()
(in
VirtualRootMover
)
InterfaceBuilderCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
idealize_sidechains()
(in
SidechainMover
)
info()
(in
ddG
)
InterfaceBuilderLoader
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
idealize_sidechains()
(in
SidechainMoverBase
)
info()
(in
AsymFoldandDockMoveRbJumpMover
)
InterfaceBuilderLoaderAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
IdealizeHelicesMover
(in
rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
)
info()
(in
AsymFoldandDockRbTrialMover
)
InterfaceBuilderLoaderCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
IdealizeHelicesMoverAP
(in
rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
)
info()
(in
InitializeByBins
)
InterfaceBuilderLoaderCreator
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
IdealizeHelicesMoverCAP
(in
rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
)
info()
(in
PerturbByBins
)
InterfaceBuilderLoaderCreatorAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
IdealizeHelicesMoverCreator
(in
rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
)
info()
(in
ChiralMover
)
InterfaceBuilderLoaderCreatorCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
IdealizeHelicesMoverCreatorAP
(in
rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
)
info()
(in
HbsPatcher
)
InterfaceCAP
(in
rosetta.protocols.ligand_docking.ligand_options._protocols_ligand_docking_ligand_options_
)
IdealizeHelicesMoverCreatorCAP
(in
rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
)
info()
(in
OopDPuckMinusMover
)
InterfaceCAP
(in
rosetta.protocols.scoring._protocols_scoring_
)
IdealizeMover
(in
rosetta.protocols.idealize._protocols_idealize_
)
info()
(in
OopDPuckPlusMover
)
InterfaceData
(in
rosetta.protocols.analysis._protocols_analysis_
)
IdealizeMoverAP
(in
rosetta.protocols.idealize._protocols_idealize_
)
info()
(in
OopMover
)
InterfaceDataAP
(in
rosetta.protocols.analysis._protocols_analysis_
)
IdealizeMoverCAP
(in
rosetta.protocols.idealize._protocols_idealize_
)
info()
(in
OopPatcher
)
InterfaceDataCAP
(in
rosetta.protocols.analysis._protocols_analysis_
)
IdealizeMoverCreator
(in
rosetta.protocols.idealize._protocols_idealize_
)
info()
(in
OopPuckMinusMover
)
InterfaceDefinitionCalculator
(in
rosetta.core.pose.metrics.simple_calculators._core_pose_metrics_simple_calculators_
)
IdealizeMoverCreatorAP
(in
rosetta.protocols.idealize._protocols_idealize_
)
info()
(in
OopPuckPlusMover
)
InterfaceDefinitionCalculatorAP
(in
rosetta.core.pose.metrics.simple_calculators._core_pose_metrics_simple_calculators_
)
IdealizeMoverCreatorCAP
(in
rosetta.protocols.idealize._protocols_idealize_
)
info()
(in
OopRandomPuckMover
)
InterfaceDefinitionCalculatorCAP
(in
rosetta.core.pose.metrics.simple_calculators._core_pose_metrics_simple_calculators_
)
IdealizeNonPhiPsi
(in
rosetta.protocols.kinematic_closure.perturbers._protocols_kinematic_closure_perturbers_
)
info()
(in
OopRandomSmallMover
)
InterfaceDeltaEnergeticsCalculator
(in
rosetta.core.pose.metrics.simple_calculators._core_pose_metrics_simple_calculators_
)
IdealizeNonPhiPsiAP
(in
rosetta.protocols.kinematic_closure.perturbers._protocols_kinematic_closure_perturbers_
)
info()
(in
RationalMonteCarlo
)
InterfaceDeltaEnergeticsCalculatorAP
(in
rosetta.core.pose.metrics.simple_calculators._core_pose_metrics_simple_calculators_
)
IdealizeNonPhiPsiCAP
(in
rosetta.protocols.kinematic_closure.perturbers._protocols_kinematic_closure_perturbers_
)
info()
(in
JumpRotamerSidechainMover
)
InterfaceDeltaEnergeticsCalculatorCAP
(in
rosetta.core.pose.metrics.simple_calculators._core_pose_metrics_simple_calculators_
)
IdealizeRamaEnergy()
(in
Ramachandran2B
)
info()
(in
PerturbChiSidechainMover
)
InterfaceFeatures
(in
rosetta.protocols.features._protocols_features_
)
IdealParameters
(in
rosetta.protocols.kinematic_closure._protocols_kinematic_closure_
)
info()
(in
PerturbRotamerSidechainMover
)
InterfaceFeaturesAP
(in
rosetta.protocols.features._protocols_features_
)
IdealParametersAP
(in
rosetta.protocols.kinematic_closure._protocols_kinematic_closure_
)
info()
(in
SetChiMover
)
InterfaceFeaturesCAP
(in
rosetta.protocols.features._protocols_features_
)
IdealParametersCAP
(in
rosetta.protocols.kinematic_closure._protocols_kinematic_closure_
)
info()
(in
SidechainMCMover
)
InterfaceFeaturesCreator
(in
rosetta.protocols.features._protocols_features_
)
IdealParametersDatabase
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
info()
(in
SidechainMover
)
InterfaceFeaturesCreatorAP
(in
rosetta.protocols.features._protocols_features_
)
IdealParametersDatabaseAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
info()
(in
SidechainMoverBase
)
InterfaceFeaturesCreatorCAP
(in
rosetta.protocols.features._protocols_features_
)
IdealParametersDatabaseCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
info()
(in
DetectSymmetry
)
InterfaceHolesFilter
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
identical_info_consistency_check()
(in
EnzCstTemplateRes
)
info()
(in
ExtractAsymmetricPoseMover
)
InterfaceHolesFilterAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
identify_and_set_cdr_cluster()
(in
CDRClusterSet
)
info()
(in
ExtractAsymmetricUnitMover
)
InterfaceHolesFilterCAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
identify_hbonds_1way()
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
info()
(in
FaSymDockingSlideTogether
)
InterfaceHolesFilterCreator
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
identify_hbonds_1way_AHdist()
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
info()
(in
SetupForSymmetryMover
)
InterfaceHolesFilterCreatorAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
identify_hbonds_1way_membrane()
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
info()
(in
SetupNCSMover
)
InterfaceHolesFilterCreatorCAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
identify_intra_res_hbonds()
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
info()
(in
SymDockingInitialPerturbation
)
InterfaceInfo
(in
rosetta.protocols.ligand_docking.ligand_options._protocols_ligand_docking_ligand_options_
)
identify_motif_build_positions()
(in
LigandMotifSearch
)
info()
(in
SymDockingSlideIntoContact
)
InterfaceInfo
(in
rosetta.protocols.scoring._protocols_scoring_
)
identify_motif_build_positions()
(in
MotifSearch
)
info()
(in
SymEnergyCutRotamerTrialsMover
)
InterfaceInfoAP
(in
rosetta.protocols.ligand_docking.ligand_options._protocols_ligand_docking_ligand_options_
)
identify_motif_BuildPositions()
(in
LigandMotifSearch
)
info()
(in
SymMinMover
)
InterfaceInfoAP
(in
rosetta.protocols.scoring._protocols_scoring_
)
identify_motif_BuildPositions()
(in
MotifSearch
)
info()
(in
SymPackRotamersMover
)
InterfaceInfoCAP
(in
rosetta.protocols.ligand_docking.ligand_options._protocols_ligand_docking_ligand_options_
)
identify_sheet_id_by_residue_end()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
info()
(in
SymRotamerTrialsMover
)
InterfaceInfoCAP
(in
rosetta.protocols.scoring._protocols_scoring_
)
identities()
(in
SequenceAlignment
)
info()
(in
SymShakeStructureMover
)
InterfaceNeighborDefinitionCalculator
(in
rosetta.core.pose.metrics.simple_calculators._core_pose_metrics_simple_calculators_
)
identities()
(in
RestrictIdentitiesOperation
)
info()
(in
SymmetricRMSMover
)
InterfaceNeighborDefinitionCalculatorAP
(in
rosetta.core.pose.metrics.simple_calculators._core_pose_metrics_simple_calculators_
)
identity()
(in
SequenceMapping
)
info()
(in
TaskAwareSymMinMover
)
InterfaceNeighborDefinitionCalculatorCAP
(in
rosetta.core.pose.metrics.simple_calculators._core_pose_metrics_simple_calculators_
)
identity()
(in
Quaternion_Real
)
info()
(in
StepWiseProteinMinimizer
)
InterfacePackingFilter
(in
rosetta.protocols.matdes._protocols_matdes_
)
identity()
(in
Quaternion_double
)
info()
(in
StepWiseProteinPoseSetup
)
InterfacePackingFilterAP
(in
rosetta.protocols.matdes._protocols_matdes_
)
identity()
(in
Quaternion_float
)
info()
(in
StepWiseRNA_PoseSetup
)
InterfacePackingFilterCAP
(in
rosetta.protocols.matdes._protocols_matdes_
)
identity()
(in
xyzMatrix_Real
)
info()
(in
StepWiseConnectionSampler
)
InterfacePackingFilterCreator
(in
rosetta.protocols.matdes._protocols_matdes_
)
identity()
(in
xyzMatrix_SSize
)
info()
(in
StepWiseMinimizer
)
InterfacePackingFilterCreatorAP
(in
rosetta.protocols.matdes._protocols_matdes_
)
identity()
(in
xyzMatrix_Size
)
info()
(in
StepWiseModeler
)
InterfacePackingFilterCreatorCAP
(in
rosetta.protocols.matdes._protocols_matdes_
)
identity()
(in
xyzMatrix_T_float_T
)
info()
(in
SideChainCopier
)
InterfaceRecapitulationMover
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
identity()
(in
xyzMatrix_double
)
info()
(in
StepWisePacker
)
InterfaceRecapitulationMoverAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
identity()
(in
xyzMatrix_float
)
info()
(in
PolarHydrogenPacker
)
InterfaceRecapitulationMoverCAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
identity()
(in
xyzTransform_T_double_T
)
info()
(in
PrecomputedLibraryMover
)
InterfaceRecapitulationMoverCreator
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
identity()
(in
xyzTransform_T_float_T
)
info()
(in
StepWiseProteinBackboneSampler
)
InterfaceRecapitulationMoverCreatorAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
identity_matrix()
(in
RepeatParameterFilter
)
info()
(in
StepWiseProteinCCD_Closer
)
InterfaceRecapitulationMoverCreatorCAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
identity_transform()
(in
Jump
)
info()
(in
StepWiseProteinCCD_MultiPoseCloser
)
InterfaceRegion
(in
rosetta.protocols.analysis._protocols_analysis_
)
identity_transform()
(in
RT
)
info()
(in
StepWiseProteinKIC_LoopBridger
)
InterfaceSasaDefinitionCalculator
(in
rosetta.core.pose.metrics.simple_calculators._core_pose_metrics_simple_calculators_
)
IdentityEval
(in
rosetta.core.fragment.picking_old.vall.eval._core_fragment_picking_old_vall_eval_
)
info()
(in
BulgeApplyMover
)
InterfaceSasaDefinitionCalculatorAP
(in
rosetta.core.pose.metrics.simple_calculators._core_pose_metrics_simple_calculators_
)
IdentityEvalAP
(in
rosetta.core.fragment.picking_old.vall.eval._core_fragment_picking_old_vall_eval_
)
info()
(in
BulgeUnApplyMover
)
InterfaceSasaDefinitionCalculatorCAP
(in
rosetta.core.pose.metrics.simple_calculators._core_pose_metrics_simple_calculators_
)
IdentityEvalCAP
(in
rosetta.core.fragment.picking_old.vall.eval._core_fragment_picking_old_vall_eval_
)
info()
(in
RNA_ChainClosureChecker
)
InterfaceSasaFilter
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
IdentityEvent
(in
rosetta.core.conformation.signals._core_conformation_signals_
)
info()
(in
RNA_HelixAssembler
)
InterfaceSasaFilterAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
IdentityEventAP
(in
rosetta.core.conformation.signals._core_conformation_signals_
)
info()
(in
O2PrimePacker
)
InterfaceSasaFilterCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
IdentityEventCAP
(in
rosetta.core.conformation.signals._core_conformation_signals_
)
info()
(in
MultiPhosphateSampler
)
InterfaceSasaFilterCreator
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
IdentityFunc
(in
rosetta.core.scoring.func._core_scoring_func_
)
info()
(in
PhosphateMover
)
InterfaceSasaFilterCreatorAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
IdentityFuncAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
info()
(in
SugarInstantiateMover
)
InterfaceSasaFilterCreatorCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
IdentityFuncCAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
info()
(in
SugarVirtualizeMover
)
InterfaceScoreCalculator
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
idle()
(in
HedgeArchive
)
info()
(in
VirtualSugarJustInTimeInstantiator
)
InterfaceScoreCalculatorAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
idle()
(in
IterativeAbrelax
)
info()
(in
VirtualSugarSampler
)
InterfaceScoreCalculatorCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
idle()
(in
IterativeBase
)
info()
(in
VirtualSugarSamplerFromStringList
)
InterfaceScoreCalculatorCreator
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
idle()
(in
IterativeCentroid
)
info()
(in
StepWiseMonteCarlo
)
InterfaceScoreCalculatorCreatorAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
idle()
(in
IterativeFullatom
)
info()
(in
AddMover
)
InterfaceScoreCalculatorCreatorCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
idle()
(in
AbstractArchiveBase
)
info()
(in
AddOrDeleteMover
)
InterfaceSidechainMinMover
(in
rosetta.protocols.docking._protocols_docking_
)
idle()
(in
ArchiveBase
)
info()
(in
DeleteMover
)
InterfaceSidechainMinMoverAP
(in
rosetta.protocols.docking._protocols_docking_
)
idle()
(in
EvaluatedArchive
)
info()
(in
FromScratchMover
)
InterfaceSidechainMinMoverCAP
(in
rosetta.protocols.docking._protocols_docking_
)
idle()
(in
NormalizedEvaluatedArchive
)
info()
(in
ResampleMover
)
InterfaceTaskOperation
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
idle()
(in
VarianceStatisticsArchive
)
info()
(in
StepWiseMasterMover
)
InterfaceTaskOperationAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
idx_to_euler()
(in
SHT
)
info()
(in
RNA_AddDeleteMonteCarlo
)
InterfaceTaskOperationCAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
idx_to_rot()
(in
SHT
)
info()
(in
RNA_O2PrimeMover
)
InterGroupInterfaceByVectorSelector
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
)
if_late_scoring_for_zeros()
(in
FragmentScoreManager
)
info()
(in
RNA_TorsionMover
)
InterGroupInterfaceByVectorSelectorAP
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
)
ifc()
(in
FunGroupTK
)
info()
(in
JumpStepWiseSampler
)
InterGroupInterfaceByVectorSelectorCAP
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
)
ifft()
(in
rosetta.numeric.fourier._numeric_fourier_
)
info()
(in
MC_Comb
)
InterGroupInterfaceByVectorSelectorCreator
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
)
ifft2()
(in
rosetta.numeric.fourier._numeric_fourier_
)
info()
(in
MC_OneTorsion
)
InterGroupInterfaceByVectorSelectorCreatorAP
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
)
ifft3()
(in
rosetta.numeric.fourier._numeric_fourier_
)
info()
(in
NoOpStepWiseSampler
)
InterGroupInterfaceByVectorSelectorCreatorCAP
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
)
ifft3_dynamic()
(in
rosetta.numeric.fourier._numeric_fourier_
)
info()
(in
StepWiseSamplerAny
)
InterGroupNeighborsCalculator
(in
rosetta.protocols.toolbox.pose_metric_calculators._protocols_toolbox_pose_metric_calculators_
)
IfMover
(in
rosetta.protocols.moves._protocols_moves_
)
info()
(in
StepWiseSamplerComb
)
InterGroupNeighborsCalculatorAP
(in
rosetta.protocols.toolbox.pose_metric_calculators._protocols_toolbox_pose_metric_calculators_
)
IfMoverAP
(in
rosetta.protocols.moves._protocols_moves_
)
info()
(in
StepWiseSamplerOneTorsion
)
InterGroupNeighborsCalculatorCAP
(in
rosetta.protocols.toolbox.pose_metric_calculators._protocols_toolbox_pose_metric_calculators_
)
IfMoverCAP
(in
rosetta.protocols.moves._protocols_moves_
)
info()
(in
StepWiseSamplerOneValue
)
InterlockAroma
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
IfMoverCreator
(in
rosetta.protocols.moves._protocols_moves_
)
info()
(in
StepWiseSamplerOneValueComb
)
InterlockAromaAP
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
IfMoverCreatorAP
(in
rosetta.protocols.moves._protocols_moves_
)
info()
(in
StepWiseSamplerSized
)
InterlockAromaCAP
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
IfMoverCreatorCAP
(in
rosetta.protocols.moves._protocols_moves_
)
info()
(in
StepWiseSamplerSizedAny
)
InterlockingAromaFilter
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
IfThenFilter
(in
rosetta.protocols.filters._protocols_filters_
)
info()
(in
StepWiseSamplerSizedComb
)
InterlockingAromaFilterAP
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
IfThenFilterAP
(in
rosetta.protocols.filters._protocols_filters_
)
info()
(in
CopyDofStepWiseSampler
)
InterlockingAromaFilterCAP
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
IfThenFilterCAP
(in
rosetta.protocols.filters._protocols_filters_
)
info()
(in
ResidueAlternativeStepWiseSampler
)
InterlockingAromaFilterCreator
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
IfThenFilterCreator
(in
rosetta.protocols.filters._protocols_filters_
)
info()
(in
ResidueAlternativeStepWiseSamplerComb
)
InterlockingAromaFilterCreatorAP
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
IfThenFilterCreatorAP
(in
rosetta.protocols.filters._protocols_filters_
)
info()
(in
ResidueListStepWiseSampler
)
InterlockingAromaFilterCreatorCAP
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
IfThenFilterCreatorCAP
(in
rosetta.protocols.filters._protocols_filters_
)
info()
(in
InputStreamStepWiseSampler
)
intermediate_structs()
(in
Batch
)
ig()
(in
PackDaemon
)
info()
(in
ProteinBetaAntiParallelStepWiseSampler
)
intermedrelax()
(in
LoopRelaxMover
)
ig()
(in
PackRotamersMover
)
info()
(in
ProteinFragmentStepWiseSampler
)
intermedrelax()
(in
LoopMoverFromCommandLine
)
IGEdgeReweightContainer
(in
rosetta.core.pack.task._core_pack_task_
)
info()
(in
ProteinMainChainStepWiseSampler
)
intermol
(in
ScoreType
)
IGEdgeReweightContainerAP
(in
rosetta.core.pack.task._core_pack_task_
)
info()
(in
RigidBodyStepWiseSampler
)
intermol
(in
rosetta.core.scoring._core_scoring_
)
IGEdgeReweightContainerCAP
(in
rosetta.core.pack.task._core_pack_task_
)
info()
(in
RigidBodyStepWiseSamplerWithResidueAlternatives
)
intermol
(in
rosetta.core.scoring
)
IGEdgeReweighter
(in
rosetta.core.pack.task._core_pack_task_
)
info()
(in
RigidBodyStepWiseSamplerWithResidueList
)
intermol
(in
rosetta
)
IGEdgeReweighterAP
(in
rosetta.core.pack.task._core_pack_task_
)
info()
(in
RNA_ChiStepWiseSampler
)
IntermolEnergy
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
IGEdgeReweighterCAP
(in
rosetta.core.pack.task._core_pack_task_
)
info()
(in
RNA_KIC_Sampler
)
IntermolEnergyAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
IGEdgeReweights()
(in
PackerTask
)
info()
(in
RNA_KinematicCloser
)
IntermolEnergyCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
IGEdgeReweights()
(in
PackerTask_
)
info()
(in
RNA_MC_MultiSuite
)
IntermolEnergyCreator
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
IGLigandDesignEdgeUpweighter
(in
rosetta.protocols.toolbox._protocols_toolbox_
)
info()
(in
RNA_MC_Sugar
)
IntermolEnergyCreatorAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
IGLigandDesignEdgeUpweighterAP
(in
rosetta.protocols.toolbox._protocols_toolbox_
)
info()
(in
RNA_MC_Suite
)
IntermolEnergyCreatorCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
IGLigandDesignEdgeUpweighterCAP
(in
rosetta.protocols.toolbox._protocols_toolbox_
)
info()
(in
RNA_NucleosideStepWiseSampler
)
INTERNAL
(in
ICoorAtomID
)
ignore()
(in
IgnoreSubsetConstraintSet
)
info()
(in
RNA_SugarStepWiseSampler
)
INTERNAL
(in
Type
)
ignore_cmdline_enzdes_cstfile()
(in
VarLengthBuild
)
info()
(in
RNA_SuiteStepWiseSampler
)
internal
(in
rosetta.numeric
)
ignore_default_task()
(in
DockingHighRes
)
info()
(in
StepWiseCSA_JobDistributor
)
InternalWorkingResidueParameter
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
ignore_h_collisions()
(in
LigandConformerBuilder
)
info()
(in
StepWiseJobDistributor
)
InternalWorkingResidueParameterAP
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
ignore_h_collisions()
(in
RigidLigandBuilder
)
info()
(in
StepWiseMonteCarloJobDistributor
)
InternalWorkingResidueParameterCAP
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
ignore_h_collisions()
(in
LigandConformer
)
info()
(in
CentroidRelaxMover
)
interp_dspline()
(in
rosetta.core.scoring.electron_density._core_scoring_electron_density_
)
ignore_list()
(in
IgnoreSubsetConstraintSet
)
info()
(in
FullatomRelaxMover
)
interp_range
(in
rosetta.numeric.interpolation.spline._numeric_interpolation_spline_
)
ignore_loops()
(in
NcontactsCalculator
)
info()
(in
SurfaceDockingProtocol
)
interp_rangeAP
(in
rosetta.numeric.interpolation.spline._numeric_interpolation_spline_
)
ignore_pikaa_natro()
(in
LayerDesignOperation
)
info()
(in
SurfaceOrientMover
)
interp_rangeCAP
(in
rosetta.numeric.interpolation.spline._numeric_interpolation_spline_
)
ignore_residue()
(in
IgnoreSubsetConstraintSet
)
info()
(in
SymDockBaseProtocol
)
interp_spline()
(in
rosetta.core.scoring.electron_density._core_scoring_electron_density_
)
ignore_residues_in_csts()
(in
IdealizeMover
)
info()
(in
SymDockProtocol
)
interpolate()
(in
CompoundInterpolator
)
ignore_same_sheet()
(in
NcontactsCalculator
)
info()
(in
SymDockingHiRes
)
interpolate()
(in
Interpolator
)
ignore_same_sselement()
(in
NcontactsCalculator
)
info()
(in
SymDockingLowRes
)
interpolate()
(in
SimpleInterpolator
)
ignore_secstruct()
(in
RNA_DeNovoProtocol
)
info()
(in
SymFoldandDockMoveRbJumpMover
)
interpolate_2d_func_of_angles()
(in
rosetta.basic._basic_
)
ignore_unrecognized_res()
(in
FileDataOptions
)
info()
(in
SymFoldandDockRbTrialMover
)
interpolate_bilinear()
(in
rosetta.basic._basic_
)
ignore_waters()
(in
FileDataOptions
)
info()
(in
SymFoldandDockSlideTrialMover
)
interpolate_bilinear_by_value()
(in
rosetta.basic._basic_
)
ignore_zero_byte()
(in
FileExistFilter
)
info()
(in
SymInterfaceSidechainMinMover
)
interpolate_get_angle_bins()
(in
rosetta.basic._basic_
)
ignore_zero_occupancy()
(in
FileDataOptions
)
info()
(in
SymSidechainMinMover
)
interpolate_sampled_to_grid()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
ignorefinished()
(in
BaseJobDistributor
)
info()
(in
MPSymDockMover
)
interpolate_trilinear()
(in
rosetta.basic._basic_
)
IgnoreSubsetConstraintSet
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
info()
(in
AlignPoseToInvrotTreeMover
)
interpolate_trilinear_by_value()
(in
rosetta.basic._basic_
)
IgnoreSubsetConstraintSetAP
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
info()
(in
StoreCombinedStoredTasksMover
)
interpolate_value_and_deriv()
(in
rosetta.core.scoring._core_scoring_
)
IgnoreSubsetConstraintSetCAP
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
info()
(in
StoreCompoundTaskMover
)
interpolated_analytic_etable_evaluation()
(in
Etable
)
II
(in
rosetta.protocols.abinitio.abscript
)
info()
(in
StoreTaskMover
)
interpolation
(in
rosetta.numeric
)
II
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
info()
(in
UnfoldedStateEnergyCalculatorMover
)
interpolation_type_enum_to_string()
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
II
(in
StageID
)
inform_edges_of_alt_state_before_bbjump()
(in
FlexbbNode
)
interpolation_type_string_to_enum()
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
IIIa
(in
rosetta.protocols.abinitio.abscript
)
inherit_cuts()
(in
Environment
)
InterpolationType
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
IIIa
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
inherit_scorefxn_temperature()
(in
SidechainMCMover
)
Interpolator
(in
rosetta.numeric.interpolation.spline._numeric_interpolation_spline_
)
IIIa
(in
StageID
)
ini_func1()
(in
rosetta.numeric.random._numeric_random_
)
InterpolatorAP
(in
rosetta.numeric.interpolation.spline._numeric_interpolation_spline_
)
IIIb
(in
rosetta.protocols.abinitio.abscript
)
ini_func2()
(in
rosetta.numeric.random._numeric_random_
)
InterpolatorCAP
(in
rosetta.numeric.interpolation.spline._numeric_interpolation_spline_
)
IIIb
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
init
(in
rosetta.core
)
InterRepeatContactFilter
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
IIIb
(in
StageID
)
init
(in
rosetta.protocols
)
InterRepeatContactFilterAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
ikey()
(in
LuaIterator
)
INIT
(in
ClaimRight
)
InterRepeatContactFilterCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
IMGT_Scheme
(in
rosetta.protocols.antibody
)
INIT
(in
DofClaim
)
InterRepeatContactFilterCreator
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
IMGT_Scheme
(in
AntibodyNumberingSchemeEnum
)
init()
(in
Tracer
)
InterRepeatContactFilterCreatorAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
IMGT_Scheme
(in
rosetta.protocols.antibody._protocols_antibody_
)
init()
(in
rosetta.basic._basic_
)
InterRepeatContactFilterCreatorCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
ImplicitFastClashCheck
(in
rosetta.protocols.scoring._protocols_scoring_
)
init()
(in
ResidueTypeSet
)
interres_evaluator()
(in
AnalyticEtableEnergy
)
ImplicitFastClashCheckAP
(in
rosetta.protocols.scoring._protocols_scoring_
)
init()
(in
rosetta.core.init._core_init_
)
interres_evaluator()
(in
TableLookupEtableEnergy
)
ImplicitFastClashCheckCAP
(in
rosetta.protocols.scoring._protocols_scoring_
)
init()
(in
ElectronDensity
)
intersect3D_2Planes()
(in
xyzTransform_T_double_T
)
import()
(in
MoveMap
)
init()
(in
FiberDiffraction
)
intersect3D_2Planes()
(in
xyzTransform_T_float_T
)
import_false()
(in
MoveMap
)
init()
(in
BBDepCartBondedParameters
)
intersects()
(in
Interval
)
import_pose
(in
rosetta.core
)
init()
(in
IdealParametersDatabase
)
intersubunit_hbond_energy()
(in
SymmetricScoreFunction
)
import_tags()
(in
RosettaScriptsParser
)
init()
(in
MMBondAngleResidueTypeParam
)
Interval
(in
rosetta.protocols.forge.build._protocols_forge_build_'
)
import_true()
(in
MoveMap
)
init()
(in
Array2D
)
Interval
(in
rosetta.protocols.jumping._protocols_jumping_
)
ImportPoseOptions
(in
rosetta.core.import_pose._core_import_pose_
)
Init()
(in
MolecularSurfaceCalculator
)
interval()
(in
Bridge
)
ImportPoseOptionsAP
(in
rosetta.core.import_pose._core_import_pose_
)
Init()
(in
ShapeComplementarityCalculator
)
interval()
(in
BuildInstruction
)
ImportPoseOptionsCAP
(in
rosetta.core.import_pose._core_import_pose_
)
init()
(in
rosetta
)
interval()
(in
ConnectRight
)
ImportPoseOptionsCreator
(in
rosetta.core.import_pose._core_import_pose_
)
init()
(in
SHT
)
interval()
(in
GrowLeft
)
ImportPoseOptionsCreatorAP
(in
rosetta.core.import_pose._core_import_pose_
)
init()
(in
SO3coeffs
)
interval()
(in
GrowRight
)
ImportPoseOptionsCreatorCAP
(in
rosetta.core.import_pose._core_import_pose_
)
init()
(in
SixDOffsetTree
)
interval()
(in
SegmentRebuild
)
ImportUnboundRotamersOperation
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
init()
(in
xyzStripeHash
)
interval()
(in
SegmentSwap
)
ImportUnboundRotamersOperationAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
init()
(in
xyzStripeHashWithMeta_T_float_T
)
interval_to_loop()
(in
rosetta.protocols.forge.methods._protocols_forge_methods_
)
ImportUnboundRotamersOperationCAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
init()
(in
ClassicAbinitio
)
IntervalAP
(in
rosetta.protocols.forge.build._protocols_forge_build_'
)
ImportUnboundRotamersOperationCreator
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
init()
(in
DoubleLayerKinematicAbinitio
)
IntervalAP
(in
rosetta.protocols.jumping._protocols_jumping_
)
ImportUnboundRotamersOperationCreatorAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
init()
(in
FoldConstraints
)
IntervalCAP
(in
rosetta.protocols.forge.build._protocols_forge_build_'
)
ImportUnboundRotamersOperationCreatorCAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
init()
(in
JumpingFoldConstraintsWrapper
)
IntervalCAP
(in
rosetta.protocols.jumping._protocols_jumping_
)
impose_constraints()
(in
IdealizeMover
)
init()
(in
KinematicAbinitio
)
intervals()
(in
BuildManager
)
improper_dihedral()
(in
ResidueType
)
init()
(in
KinematicTaskControl
)
intervals_containing_defined_positions()
(in
BuildManager
)
improper_dihedrals_for_atom()
(in
ResidueType
)
init()
(in
LoopJumpFoldCst
)
intervals_containing_new_positions()
(in
BuildManager
)
improper_torsion_parameters()
(in
ResidueCartBondedParameters
)
init()
(in
MembraneAbinitio
)
intervals_containing_preexisting_positions()
(in
BuildManager
)
in_bin_i()
(in
BinTransitionData
)
init()
(in
Protocol
)
intervals_containing_undefined_positions()
(in
BuildManager
)
in_bin_iplus1()
(in
BinTransitionData
)
init()
(in
PeptideStubMover
)
intervals_without_valid_original_equivalents()
(in
BuildManager
)
in_blacklist()
(in
WorkUnitBase
)
init()
(in
DockMCMProtocol
)
IntervalSet_Double
(in
rosetta.numeric._numeric_
)
in_charge()
(in
GuardedLoopsFromFile
)
init()
(in
DockingInitialPerturbation
)
IntervalSet_DoubleAP
(in
rosetta.numeric._numeric_
)
in_ngbat_sphere()
(in
rosetta.protocols.neighbor._protocols_neighbor_
)
init()
(in
BfactorFittingMover
)
IntervalSet_DoubleCAP
(in
rosetta.numeric._numeric_
)
in_nrg_graph()
(in
rosetta.protocols.neighbor._protocols_neighbor_
)
init()
(in
DensityMorphingMover
)
IntervalSet_T_double_T
(in
rosetta.numeric._numeric_
)
in_paired_strands()
(in
Dssp
)
init()
(in
ReportFSC
)
IntervalSet_T_double_TAP
(in
rosetta.numeric._numeric_
)
in_span()
(in
SpanningTopology
)
init()
(in
ScaleMapIntensities
)
IntervalSet_T_double_TCAP
(in
rosetta.numeric._numeric_
)
inbound()
(in
WorkUnitManager
)
init()
(in
SheetConstraintsRCG
)
intra_residue_energy()
(in
Constraints
)
incl_nonopt()
(in
GreedyOptMutationMover
)
init()
(in
RemodelConstraintGenerator
)
intracomponent_contact()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
incl_nonopt()
(in
MatDesGreedyOptMutationMover
)
init()
(in
BackboneTorsionPerturbation
)
IntraRepeatContactFilter
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
include_current()
(in
PackerTask
)
init()
(in
BackboneTorsionSampler
)
IntraRepeatContactFilterAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
include_current()
(in
PackerTask_
)
init()
(in
CartesianHybridize
)
IntraRepeatContactFilterCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
include_current()
(in
ResidueLevelTask
)
init()
(in
CartesianSampler
)
IntraRepeatContactFilterCreator
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
include_current()
(in
ResidueLevelTask_
)
init()
(in
FoldTreeHybridize
)
IntraRepeatContactFilterCreatorAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
include_current()
(in
OptH
)
init()
(in
FragmentBiasAssigner
)
IntraRepeatContactFilterCreatorCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
include_eggshell_points_based_on_known_ligand()
(in
NonPlaidFingerprint
)
init()
(in
HybridizeProtocol
)
intrares_elec_correction_scale()
(in
EnergyMethodOptions
)
include_gly()
(in
RestrictYSDesign
)
init()
(in
InsertChunkMover
)
intrares_evaluator()
(in
AnalyticEtableEnergy
)
include_lips()
(in
MembraneInfo
)
init()
(in
MRMover
)
intrares_evaluator()
(in
TableLookupEtableEnergy
)
include_lips()
(in
AddMembraneMover
)
init()
(in
rosetta.protocols.init._protocols_init_
)
intrares_side_chain_score()
(in
RNA_TorsionPotential
)
include_native_aa()
(in
ConservativeDesignOperation
)
init()
(in
MembraneJump
)
intrares_upper_atom_neighbors()
(in
NeighborList
)
include_native_aa()
(in
MutationSetDesignOperation
)
init()
(in
LoopMover_Refine_KIC
)
inv_dist6()
(in
AmbiguousNMRDistanceConstraint
)
include_native_restype()
(in
ResidueProbDesignOperation
)
init()
(in
CartesianMD
)
inv_xform()
(in
xyzTransform_T_double_T
)
include_neighbors()
(in
RestrictToLoopsAndNeighbors
)
init()
(in
ReplicaExchangeMC
)
inv_xform()
(in
xyzTransform_T_float_T
)
include_resid()
(in
RestrictYSDesign
)
init()
(in
Serial_Refine
)
INVALID
(in
rosetta.protocols.comparative_modeling.features
)
include_residue()
(in
PreventRepacking
)
init()
(in
WrapperOptEMultifunc
)
INVALID
(in
rosetta.protocols.comparative_modeling.features._protocols_comparative_modeling_features_
)
include_residue()
(in
RestrictAbsentCanonicalAAS
)
init()
(in
PocketConstraint
)
INVALID
(in
TorsionBin
)
include_residue()
(in
RestrictResidueToRepacking
)
init()
(in
SegmentHybridizer
)
INVALID_SS
(in
rosetta.protocols.comparative_modeling.features
)
include_residue()
(in
ConservativeDesignOperation
)
init()
(in
SICFast
)
INVALID_SS
(in
rosetta.protocols.comparative_modeling.features._protocols_comparative_modeling_features_
)
include_residue()
(in
DesignAroundOperation
)
init()
(in
BBGaussianMover
)
INVALID_SS
(in
SSType
)
include_trp()
(in
LimitAromaChi2Operation
)
init()
(in
MinPackMover
)
INVALID_TOKEN_TYPE
(in
rosetta.numeric.expression_parser
)
include_trp()
(in
LimitAromaChi2_RotamerSetOperation
)
init()
(in
ReportEffectivePKA
)
INVALID_TOKEN_TYPE
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
include_virtual_side_chain()
(in
ResidueLevelTask
)
init()
(in
RotamerTrialsMinMover
)
INVALID_TOKEN_TYPE
(in
TokenType
)
include_virtual_side_chain()
(in
ResidueLevelTask_
)
init()
(in
SequentialSymmetrySlider
)
INVALIDATE
(in
IdentityEvent
)
IncludeCurrent
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
init()
(in
ANN
)
INVALIDATE
(in
Tag
)
IncludeCurrentAP
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
init()
(in
StepWiseProteinCCD_Closer
)
INVALIDATE
(in
LengthEvent
)
IncludeCurrentCAP
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
init()
(in
JumpStepWiseSampler
)
INVALIDATE
(in
Tag
)
IncludeCurrentCreator
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
init()
(in
MC_Comb
)
invalidate()
(in
Link
)
IncludeCurrentCreatorAP
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
init()
(in
MC_OneTorsion
)
invalidate_residues_spanning_cuts()
(in
rosetta.protocols.medal._protocols_medal_
)
IncludeCurrentCreatorCAP
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
init()
(in
NoOpStepWiseSampler
)
invDcnst()
(in
RDC_Rohl
)
incomplete()
(in
ResConnID
)
init()
(in
StepWiseSamplerAny
)
inverse
(in
Quaternion_Real
)
incorporate_motifs()
(in
IRCollection
)
init()
(in
StepWiseSamplerBase
)
inverse
(in
Quaternion_double
)
incorporate_motifs()
(in
LigandMotifSearch
)
init()
(in
StepWiseSamplerComb
)
inverse
(in
Quaternion_float
)
incorporate_motifs()
(in
MotifSearch
)
init()
(in
StepWiseSamplerOneTorsion
)
inverse()
(in
RT
)
increase_multi_cool_annealer_history_size()
(in
PackerTask
)
init()
(in
StepWiseSamplerOneValue
)
inverse()
(in
HomogeneousTransform_T_double_T
)
increase_multi_cool_annealer_history_size()
(in
PackerTask_
)
init()
(in
StepWiseSamplerOneValueComb
)
inverse()
(in
rosetta.numeric._numeric_
)
increase_packer_residue_radius()
(in
AddResiduesRotamerSetOperation
)
init()
(in
StepWiseSamplerSized
)
inverse()
(in
xyzMatrix_Real
)
increase_packer_residue_radius()
(in
RotamerSetOperation
)
init()
(in
StepWiseSamplerSizedAny
)
inverse()
(in
xyzMatrix_SSize
)
increase_packer_residue_radius()
(in
UnboundRotamersOperation
)
init()
(in
StepWiseSamplerSizedComb
)
inverse()
(in
xyzMatrix_Size
)
increase_packer_residue_radius()
(in
SearchPatternRotSetOp
)
init()
(in
CopyDofStepWiseSampler
)
inverse()
(in
xyzMatrix_T_float_T
)
increase_packer_residue_radius()
(in
AddGood2BPairEnergyRotamers
)
init()
(in
ResidueAlternativeStepWiseSampler
)
inverse()
(in
xyzMatrix_double
)
increase_packer_residue_radius()
(in
RigidBodyMoveBaseRSO
)
init()
(in
ResidueAlternativeStepWiseSamplerComb
)
inverse()
(in
xyzMatrix_float
)
increase_packer_residue_radius()
(in
RigidBodyMoveRSO
)
init()
(in
ResidueListStepWiseSampler
)
inverse()
(in
xyzTransform_T_double_T
)
increase_packer_residue_radius()
(in
SpecialRotamerRSO
)
init()
(in
InputStreamStepWiseSampler
)
inverse()
(in
xyzTransform_T_float_T
)
increase_packer_residue_radius()
(in
LimitAromaChi2_RotamerSetOperation
)
init()
(in
ProteinBetaAntiParallelStepWiseSampler
)
inverse()
(in
kiss_dct_state
)
increasing()
(in
Loop
)
init()
(in
ProteinFragmentStepWiseSampler
)
inverse()
(in
kiss_fft_state
)
increment_both()
(in
RotamerDots
)
init()
(in
ProteinMainChainStepWiseSampler
)
inverse()
(in
kiss_fftnd_state
)
increment_both_and_cache()
(in
RotamerDots
)
init()
(in
RigidBodyStepWiseSampler
)
inverse()
(in
kiss_fftndr_state
)
increment_client_rank()
(in
MPIFileBufJobDistributor
)
init()
(in
RigidBodyStepWiseSamplerValueRange
)
inverse()
(in
kiss_fftr_state
)
increment_count()
(in
DotSphere
)
init()
(in
RigidBodyStepWiseSamplerWithResidueAlternatives
)
inverse()
(in
kiss_fftsplit_state
)
increment_count()
(in
RotamerDotsCache
)
init()
(in
RigidBodyStepWiseSamplerWithResidueList
)
inverse_rotamers_against_residue()
(in
MatchConstraintFileInfo
)
increment_count()
(in
StepWiseScreener
)
init()
(in
RNA_ChiStepWiseSampler
)
inverse_rotamers_against_residue()
(in
MatchConstraintFileInfoList
)
increment_count_nodes_in_flexseg()
(in
FlexbbInteractionGraph
)
init()
(in
RNA_KIC_Sampler
)
inverse_rt6()
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
increment_cur_indices()
(in
BackboneGridSamplerHelper
)
init()
(in
RNA_KinematicCloser
)
invert()
(in
Quaternion_Real
)
increment_cur_indices()
(in
BundleGridSamplerHelper
)
init()
(in
RNA_MC_MultiSuite
)
invert()
(in
Quaternion_double
)
increment_edge_list_iterator()
(in
InteractionGraphBase
)
init()
(in
RNA_MC_Sugar
)
invert()
(in
Quaternion_float
)
increment_from_cached()
(in
RotamerDots
)
init()
(in
RNA_MC_Suite
)
invert()
(in
CompoundFilter
)
increment_helix_count()
(in
BundleGridSampler
)
init()
(in
RNA_NucleosideStepWiseSampler
)
invert()
(in
Loops
)
increment_histogram_bin()
(in
OrbitalsStatistics
)
init()
(in
RNA_SugarStepWiseSampler
)
invert()
(in
Embedding
)
increment_self_overlap()
(in
RotamerDots
)
init()
(in
RNA_SuiteStepWiseSampler
)
invert()
(in
EmbeddingDef
)
increment_this_and_cache()
(in
RotamerDots
)
init()
(in
SymFoldandDockRbTrialMover
)
invert()
(in
StoreCompoundTaskMover
)
increment_unique_id()
(in
IRCollection
)
init()
(in
GreedyKCenter
)
invert_direction()
(in
NormalModeRelaxMover
)
incremente_n_multi_data()
(in
PcsEnergyParameterManager
)
init()
(in
InteratomicVarianceMatrix
)
invert_exclude_residues()
(in
rosetta.core.scoring._core_scoring_
)
incremente_n_multi_data()
(in
PcsGridSearchParameterManager
)
init()
(in
KCluster
)
invert_helix()
(in
MakeBundleHelix
)
independent_residues()
(in
SymmetryInfo
)
init()
(in
KMedoid
)
invert_helix()
(in
BundleParameters
)
IndependentBBTorsionSRFD
(in
rosetta.core.fragment._core_fragment_
)
init()
(in
EnzConstraintParameters
)
invert_include_residues()
(in
rosetta.protocols.evaluation._protocols_evaluation_
)
IndependentBBTorsionSRFDAP
(in
rosetta.core.fragment._core_fragment_
)
init_angle()
(in
GetRBDOFValues
)
invert_to_boolmasks()
(in
RotamerDots
)
IndependentBBTorsionSRFDCAP
(in
rosetta.core.fragment._core_fragment_
)
init_atype_maps()
(in
HolesParams
)
invert_to_compact_array()
(in
DotSphere
)
IndependentLoopMover
(in
rosetta.protocols.loops.loop_mover._protocols_loops_loop_mover_
)
init_bbgmover()
(in
GeneralizedKICperturber
)
inverted
(in
xyzMatrix_Real
)
IndependentLoopMoverAP
(in
rosetta.protocols.loops.loop_mover._protocols_loops_loop_mover_
)
init_beta_correction()
(in
rosetta.core.init._core_init_
)
inverted
(in
xyzMatrix_SSize
)
IndependentLoopMoverCAP
(in
rosetta.protocols.loops.loop_mover._protocols_loops_loop_mover_
)
init_centroids()
(in
MakeRotLibMover
)
inverted
(in
xyzMatrix_Size
)
Index
(in
rosetta.basic.database.schema_generator._basic_database_schema_generator_
)
init_clash_check()
(in
ImplicitFastClashCheck
)
inverted
(in
xyzMatrix_double
)
index()
(in
ResidueConnection
)
init_common_options()
(in
rosetta.protocols.ncbb._protocols_ncbb_
)
inverted
(in
xyzMatrix_float
)
index()
(in
MolFileIOAtom
)
init_correct_correction()
(in
rosetta.core.init._core_init_
)
InvGeometricFunc
(in
rosetta.protocols.moves._protocols_moves_
)
index()
(in
MolFileIOBond
)
init_crystal_refinement_correction()
(in
rosetta.core.init._core_init_
)
InvGeometricFuncAP
(in
rosetta.protocols.moves._protocols_moves_
)
index()
(in
VallSection
)
init_cst_score_types()
(in
AmbiguousConstraint
)
InvGeometricFuncCAP
(in
rosetta.protocols.moves._protocols_moves_
)
index()
(in
EntityElement
)
init_cst_score_types()
(in
KofNConstraint
)
InvLegendre()
(in
SO3coeffs
)
index()
(in
ScaffoldBuildPoint
)
init_defaults()
(in
SymmetryInfo
)
invoke()
(in
Invoker
)
index()
(in
MatchConstraintFileInfo
)
init_disp()
(in
GetRBDOFValues
)
Invoker
(in
rosetta.core.scoring.etable.count_pair._core_scoring_etable_count_pair_
)
index()
(in
LexicographicalIterator
)
init_dna_correction()
(in
rosetta.core.init._core_init_
)
InvokerAP
(in
rosetta.core.scoring.etable.count_pair._core_scoring_etable_count_pair_
)
index()
(in
SimulateMPIMessage
)
init_facts_correction()
(in
rosetta.core.init._core_init_
)
InvokerCAP
(in
rosetta.core.scoring.etable.count_pair._core_scoring_etable_count_pair_
)
index()
(in
vector1_T_utility_history_queue_struct_std_allocator_T_utility_history_queue_struct_T__T
)
init_fast()
(in
RNA_SuiteStepWiseSampler
)
involved_in_phosphate_torsion()
(in
rosetta.protocols.farna._protocols_farna_
)
index()
(in
Svm_node_rosetta
)
init_from_cmd()
(in
WorkUnit_LoopHash
)
InvRotamerDots
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
index2symbol()
(in
ABEGOManager
)
init_from_cmd()
(in
WorkUnit_CombinePose
)
InvRotamerDotsAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
index_of_entity()
(in
TopEntitySet
)
init_from_cmd()
(in
WorkUnit_FragInsert
)
InvRotamerDotsCAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
index_to_id()
(in
PoseBalls
)
init_from_cmd()
(in
WorkUnit_KicCloser
)
InvrotCollector
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
index_to_id()
(in
PoseBallsLite
)
init_from_cmd()
(in
WorkUnit_LoopHash
)
InvrotCollectorAP
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
IndexAP
(in
rosetta.basic.database.schema_generator._basic_database_schema_generator_
)
init_from_cmd()
(in
WorkUnit_MD
)
InvrotCollectorCAP
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
IndexCAP
(in
rosetta.basic.database.schema_generator._basic_database_schema_generator_
)
init_from_cmd()
(in
WorkUnit_NormalMode
)
invrots()
(in
InvrotCollector
)
indexed_structure_store
(in
rosetta.core
)
init_from_cmd()
(in
WorkUnit_PartialAbinitio
)
InvrotTarget
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
indexed_structure_store
(in
rosetta.protocols
)
init_from_cmd()
(in
WorkUnit_RamaPerturber
)
InvrotTargetAP
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
indicate_required_context_graphs()
(in
DunbrackEnergy
)
init_from_cmd()
(in
WorkUnit_Relax
)
InvrotTargetCAP
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
indicate_required_context_graphs()
(in
CenRotDunEnergy
)
init_from_cmd()
(in
WorkUnit_Sampler
)
InvrotTree
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
indicate_required_context_graphs()
(in
HPatchEnergy
)
init_from_cmd()
(in
WorkUnit_bbGauss
)
InvrotTreeAP
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
indicate_required_context_graphs()
(in
SurfaceEnergy
)
init_from_comand_line()
(in
OptH
)
InvrotTreeCAP
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
indicate_required_context_graphs()
(in
ScoreFunction
)
init_from_decoy_set()
(in
HedgeArchive
)
InvrotTreeNode
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
indicate_required_context_graphs()
(in
CarbonHBondEnergy
)
init_from_decoy_set()
(in
IterativeAbrelax
)
InvrotTreeNodeAP
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
indicate_required_context_graphs()
(in
ConstraintsEnergy
)
init_from_decoy_set()
(in
IterativeBase
)
InvrotTreeNodeBase
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
indicate_required_context_graphs()
(in
XtalMLEnergy
)
init_from_decoy_set()
(in
IterativeCentroid
)
InvrotTreeNodeBaseAP
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
indicate_required_context_graphs()
(in
FullatomCustomPairDistanceEnergy
)
init_from_decoy_set()
(in
IterativeFullatom
)
InvrotTreeNodeBaseCAP
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
indicate_required_context_graphs()
(in
CentroidDisulfideEnergy
)
init_from_decoy_set()
(in
AbstractArchiveBase
)
InvrotTreeNodeCAP
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
indicate_required_context_graphs()
(in
DisulfideMatchingEnergy
)
init_from_decoy_set()
(in
ArchiveBase
)
InvrotTreeRCGAP
(in
rosetta.protocols.forge.constraints._protocols_forge_constraints_'
)
indicate_required_context_graphs()
(in
FullatomDisulfideEnergy
)
init_from_decoy_set()
(in
EvaluatedArchive
)
InvrotTreeRCGCAP
(in
rosetta.protocols.forge.constraints._protocols_forge_constraints_'
)
indicate_required_context_graphs()
(in
DNAChiEnergy
)
init_from_decoy_set()
(in
NormalizedEvaluatedArchive
)
invstub()
(in
rosetta.protocols.sic_dock._protocols_sic_dock_
)
indicate_required_context_graphs()
(in
DNATorsionEnergy
)
init_from_decoy_set()
(in
VarianceStatisticsArchive
)
inward_normal_to_plane()
(in
EllipsoidalRandomizationMover
)
indicate_required_context_graphs()
(in
FA_ElecEnergy
)
init_from_file()
(in
MoveMap
)
io
(in
rosetta.core
)
indicate_required_context_graphs()
(in
FA_ElecEnergyAroAll
)
init_from_file()
(in
SingleLigandRotamerLibrary
)
io
(in
rosetta.protocols.membrane
)
indicate_required_context_graphs()
(in
FA_ElecEnergyAroAro
)
init_from_lines()
(in
PDBSilentStruct
)
io
(in
rosetta.utility
)
indicate_required_context_graphs()
(in
FA_GrpElecEnergy
)
init_from_lines()
(in
BinarySilentStruct
)
IonizableResidue
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
indicate_required_context_graphs()
(in
RNA_FA_ElecEnergy
)
init_from_lines()
(in
RNA_SilentStruct
)
IonizableResidueAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
indicate_required_context_graphs()
(in
ElecDensAllAtomCenEnergy
)
init_from_lines()
(in
RigidBodySilentStruct
)
IonizableResidueCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
indicate_required_context_graphs()
(in
ElecDensCenEnergy
)
init_from_lines()
(in
ScoreFileSilentStruct
)
ionized_restypes()
(in
IonizableResidue
)
indicate_required_context_graphs()
(in
ElecDensEnergy
)
init_from_lines()
(in
ScoreJumpFileSilentStruct
)
IOStream
(in
rosetta.utility._utility_
)
indicate_required_context_graphs()
(in
FastDensEnergy
)
init_from_lines()
(in
SilentStruct
)
IOTraits_T_double_T
(in
rosetta.numeric._numeric_
)
indicate_required_context_graphs()
(in
PattersonCorrEnergy
)
init_from_options()
(in
AntibodyModeler
)
IOTraits_T_double_TAP
(in
rosetta.numeric._numeric_
)
indicate_required_context_graphs()
(in
ElecDensAtomwiseEnergy
)
init_from_options()
(in
DockTaskFactory
)
IOTraits_T_double_TCAP
(in
rosetta.numeric._numeric_
)
indicate_required_context_graphs()
(in
AnalyticEtableEnergy
)
init_from_options()
(in
DockingInitialPerturbation
)
IOTraits_T_float_T
(in
rosetta.numeric._numeric_
)
indicate_required_context_graphs()
(in
BaseEtableEnergy_T_core_scoring_etable_AnalyticEtableEnergy_T
)
init_from_options()
(in
EllipsoidalRandomizationMover
)
IOTraits_T_float_TAP
(in
rosetta.numeric._numeric_
)
indicate_required_context_graphs()
(in
BaseEtableEnergy_T_core_scoring_etable_TableLookupEtableEnergy_T
)
init_from_options()
(in
StrandBundleFeatures
)
IOTraits_T_float_TCAP
(in
rosetta.numeric._numeric_
)
indicate_required_context_graphs()
(in
TableLookupEtableEnergy
)
init_from_options()
(in
NormalizedEvaluatedArchive
)
IOTraits_T_int_T
(in
rosetta.numeric._numeric_
)
indicate_required_context_graphs()
(in
FiberDiffractionEnergy
)
init_from_pose()
(in
FileData
)
IOTraits_T_int_TAP
(in
rosetta.numeric._numeric_
)
indicate_required_context_graphs()
(in
FiberDiffractionEnergyDens
)
init_hbond_sp2_correction()
(in
rosetta.core.init._core_init_
)
IOTraits_T_int_TCAP
(in
rosetta.numeric._numeric_
)
indicate_required_context_graphs()
(in
ContextDependentGeometricSolEnergy
)
init_kic_loop()
(in
BBGaussianMover
)
IOTraits_T_long_double_T
(in
rosetta.numeric._numeric_
)
indicate_required_context_graphs()
(in
ContextIndependentGeometricSolEnergy
)
init_matrix()
(in
NWAligner
)
IOTraits_T_long_double_TAP
(in
rosetta.numeric._numeric_
)
indicate_required_context_graphs()
(in
ExactOccludedHbondSolEnergy
)
init_mc()
(in
DockMCMCycle
)
IOTraits_T_long_double_TCAP
(in
rosetta.numeric._numeric_
)
indicate_required_context_graphs()
(in
OccludedHbondSolEnergy
)
init_membrane_center_normal()
(in
MembranePotential
)
IOTraits_T_long_int_T
(in
rosetta.numeric._numeric_
)
indicate_required_context_graphs()
(in
OccludedHbondSolEnergy_onebody
)
init_mini_pose()
(in
ResiduePairJump
)
IOTraits_T_long_int_TAP
(in
rosetta.numeric._numeric_
)
indicate_required_context_graphs()
(in
HackAroEnergy
)
init_mpi()
(in
rosetta.core.init._core_init_
)
IOTraits_T_long_int_TCAP
(in
rosetta.numeric._numeric_
)
indicate_required_context_graphs()
(in
HBondEnergy
)
init_nonideal_correction()
(in
rosetta.core.init._core_init_
)
IOTraits_T_long_unsigned_int_T
(in
rosetta.numeric._numeric_
)
indicate_required_context_graphs()
(in
DDPscore
)
init_on_new_input()
(in
InterfaceAnalyzerMover
)
IOTraits_T_long_unsigned_int_TAP
(in
rosetta.numeric._numeric_
)
indicate_required_context_graphs()
(in
LoopCloseEnergy
)
init_on_new_input()
(in
AntibodyModeler
)
IOTraits_T_long_unsigned_int_TCAP
(in
rosetta.numeric._numeric_
)
indicate_required_context_graphs()
(in
FaMPEnvEnergy
)
init_options()
(in
rosetta.core.init._core_init_
)
IOTraits_T_short_int_T
(in
rosetta.numeric._numeric_
)
indicate_required_context_graphs()
(in
FaMPEnvSmoothEnergy
)
init_packing_score_discrim()
(in
rosetta.core.scoring.packstat._core_scoring_packstat_
)
IOTraits_T_short_int_TAP
(in
rosetta.numeric._numeric_
)
indicate_required_context_graphs()
(in
FaMPSolvEnergy
)
init_packing_score_respred()
(in
rosetta.core.scoring.packstat._core_scoring_packstat_
)
IOTraits_T_short_int_TCAP
(in
rosetta.numeric._numeric_
)
indicate_required_context_graphs()
(in
MPCbetaEnergy
)
init_parameters()
(in
MotifGraftMover
)
IOTraits_T_short_unsigned_int_T
(in
rosetta.numeric._numeric_
)
indicate_required_context_graphs()
(in
MPEnvEnergy
)
init_paths()
(in
rosetta.core.init._core_init_
)
IOTraits_T_short_unsigned_int_TAP
(in
rosetta.numeric._numeric_
)
indicate_required_context_graphs()
(in
MPLipoEnergy
)
init_pose()
(in
ResolutionSwitcher
)
IOTraits_T_short_unsigned_int_TCAP
(in
rosetta.numeric._numeric_
)
indicate_required_context_graphs()
(in
MPNonHelixPenalty
)
init_posehash()
(in
xyzStripeHashPose
)
IOTraits_T_unsigned_int_T
(in
rosetta.numeric._numeric_
)
indicate_required_context_graphs()
(in
MPPairEnergy
)
init_profiling()
(in
rosetta.core.init._core_init_
)
IOTraits_T_unsigned_int_TAP
(in
rosetta.numeric._numeric_
)
indicate_required_context_graphs()
(in
MPTMProjPenalty
)
init_random_generators()
(in
rosetta.core.init._core_init_
)
IOTraits_T_unsigned_int_TCAP
(in
rosetta.numeric._numeric_
)
indicate_required_context_graphs()
(in
MPTerminiPenalty
)
init_random_number_generators()
(in
rosetta.core.init._core_init_
)
IRCollection
(in
rosetta.protocols.motifs._protocols_motifs_
)
indicate_required_context_graphs()
(in
BurialEnergy
)
init_res_list()
(in
ReferenceEnergyNoncanonical
)
IRCollectionAP
(in
rosetta.protocols.motifs._protocols_motifs_
)
indicate_required_context_graphs()
(in
CartesianBondedEnergy
)
init_resources()
(in
rosetta.core.init._core_init_
)
IRCollectionCAP
(in
rosetta.protocols.motifs._protocols_motifs_
)
indicate_required_context_graphs()
(in
CenHBEnergy
)
init_restore_score12prime()
(in
rosetta.core.init._core_init_
)
IRmsdFilter
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
indicate_required_context_graphs()
(in
CenPairEnergy
)
init_revert_to_pre_talaris_2013_mistake()
(in
rosetta.core.init._core_init_
)
IRmsdFilterAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
indicate_required_context_graphs()
(in
CenRotEnvEnergy
)
init_rotamer_recovery_with_options()
(in
RotamerRecovery
)
IRmsdFilterCAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
indicate_required_context_graphs()
(in
CenRotPairEnergy
)
init_rotamers()
(in
MakeRotLibMover
)
IRmsdFilterCreator
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
indicate_required_context_graphs()
(in
ChainbreakEnergy
)
init_rotamers_centroids()
(in
rosetta.protocols.make_rot_lib._protocols_make_rot_lib_
)
IRmsdFilterCreatorAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
indicate_required_context_graphs()
(in
ChemicalShiftAnisotropyEnergy
)
init_score_function_corrections()
(in
rosetta.core.init._core_init_
)
IRmsdFilterCreatorCAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
indicate_required_context_graphs()
(in
ContactOrderEnergy
)
init_shapovalov_lib_fixes_enable_correction()
(in
rosetta.core.init._core_init_
)
is_a_finitenumber()
(in
rosetta.numeric._numeric_
)
indicate_required_context_graphs()
(in
ContextDependentLRTwoBodyEnergy
)
init_source_revision()
(in
rosetta.core.init._core_init_
)
is_acc_chem_type()
(in
HBondTypeManager
)
indicate_required_context_graphs()
(in
ContextDependentOneBodyEnergy
)
init_standard()
(in
RNA_SuiteStepWiseSampler
)
is_acceptor()
(in
Atom
)
indicate_required_context_graphs()
(in
ContextDependentTwoBodyEnergy
)
init_static_inputs()
(in
Inline_File_Provider
)
is_acceptor()
(in
AtomType
)
indicate_required_context_graphs()
(in
ContextIndependentLRTwoBodyEnergy
)
init_strength()
(in
TorsionClaim
)
is_acetylated()
(in
CarbohydrateInfo
)
indicate_required_context_graphs()
(in
ContextIndependentOneBodyEnergy
)
init_strength()
(in
XYZClaim
)
is_acetylated_nterminus()
(in
ResidueType
)
indicate_required_context_graphs()
(in
ContextIndependentTwoBodyEnergy
)
init_task()
(in
SidechainMover
)
is_acyclic()
(in
CarbohydrateInfo
)
indicate_required_context_graphs()
(in
CustomAtomPairEnergy
)
init_task()
(in
SidechainMoverBase
)
is_adduct()
(in
ResidueType
)
indicate_required_context_graphs()
(in
D2H_SA_Energy
)
init_tracers()
(in
rosetta.core.init._core_init_
)
is_aldose()
(in
CarbohydrateInfo
)
indicate_required_context_graphs()
(in
DNA_BaseEnergy
)
init_with_options()
(in
BackrubMover
)
is_alpha_aa()
(in
ResidueType
)
indicate_required_context_graphs()
(in
DipolarCouplingEnergy
)
init_with_options()
(in
RotamerRecovery
)
is_alpha_sugar()
(in
CarbohydrateInfo
)
indicate_required_context_graphs()
(in
DirectReadoutEnergy
)
init_with_pose()
(in
xyzStripeHashPoseWithMeta
)
is_amino_sugar()
(in
CarbohydrateInfo
)
indicate_required_context_graphs()
(in
DistanceChainbreakEnergy
)
initHBond()
(in
PDB
)
is_ancestor_virtual()
(in
SymmData
)
indicate_required_context_graphs()
(in
EnergyMethod
)
INITIALIZE
(in
rosetta.basic
)
is_anti()
(in
Pairing
)
indicate_required_context_graphs()
(in
EnvEnergy
)
INITIALIZE
(in
rosetta.basic._basic_
)
is_apolar()
(in
Residue
)
indicate_required_context_graphs()
(in
EnvSmoothEnergy
)
INITIALIZE
(in
ProfTag
)
is_applicable()
(in
AnnotatedFragData
)
indicate_required_context_graphs()
(in
Fa_MbenvEnergy
)
initialize()
(in
rosetta.basic.options._basic_options_
)
is_applicable()
(in
BBTorsionAndAnglesSRFD
)
indicate_required_context_graphs()
(in
Fa_MbsolvEnergy
)
initialize()
(in
AtomTypeDatabaseIO
)
is_applicable()
(in
BBTorsionSRFD
)
indicate_required_context_graphs()
(in
FreeDOF_Energy
)
initialize()
(in
ResidueDatabaseIO
)
is_applicable()
(in
DownJumpSRFD
)
indicate_required_context_graphs()
(in
GaussianOverlapEnergy
)
initialize()
(in
SymmetryInfo
)
is_applicable()
(in
FragData
)
indicate_required_context_graphs()
(in
GenBornEnergy
)
initialize()
(in
RNA_DataReader
)
is_applicable()
(in
Frame
)
indicate_required_context_graphs()
(in
GoapEnergy
)
initialize()
(in
DescentDirectionAlgorithm
)
is_applicable()
(in
IndependentBBTorsionSRFD
)
indicate_required_context_graphs()
(in
HybridVDW_Energy
)
initialize()
(in
DensePDInteractionGraph
)
is_applicable()
(in
SecstructSRFD
)
indicate_required_context_graphs()
(in
IntermolEnergy
)
initialize()
(in
DoubleDensePDInteractionGraph
)
is_applicable()
(in
SingleResidueFragData
)
indicate_required_context_graphs()
(in
LK_BallEnergy
)
initialize()
(in
DoubleLazyInteractionGraph
)
is_applicable()
(in
UpJumpSRFD
)
indicate_required_context_graphs()
(in
LK_PolarNonPolarEnergy
)
initialize()
(in
FASTERInteractionGraph
)
is_archive_rank()
(in
MPIArchiveJobDistributor
)
indicate_required_context_graphs()
(in
LK_hack
)
initialize()
(in
InteractionGraphBase
)
is_aromatic()
(in
AtomType
)
indicate_required_context_graphs()
(in
LinearChainbreakEnergy
)
initialize()
(in
OnTheFlyInteractionGraph
)
is_aromatic()
(in
ResidueType
)
indicate_required_context_graphs()
(in
LongRangeTwoBodyEnergy
)
initialize()
(in
PDInteractionGraph
)
is_aromatic()
(in
Residue
)
indicate_required_context_graphs()
(in
MMBondAngleEnergy
)
initialize()
(in
SimpleInteractionGraph
)
is_asymmetric_seqpos()
(in
SymmetryInfo
)
indicate_required_context_graphs()
(in
MMBondLengthEnergy
)
initialize()
(in
SymmOnTheFlyInteractionGraph
)
is_attached()
(in
CacheableObserver
)
indicate_required_context_graphs()
(in
MMLJEnergyInter
)
initialize()
(in
CenListInfo
)
is_attached()
(in
LengthEventCollector
)
indicate_required_context_graphs()
(in
MMLJEnergyIntra
)
initialize()
(in
GenBornPoseInfo
)
is_attached()
(in
ObserverCache
)
indicate_required_context_graphs()
(in
MMTorsionEnergy
)
initialize()
(in
GenBornResidueInfo
)
is_attached()
(in
SpecialSegmentsObserver
)
indicate_required_context_graphs()
(in
MembraneCbetaEnergy
)
initialize()
(in
GenBornRotamerSetInfo
)
is_attached()
(in
EnzdesCacheableObserver
)
indicate_required_context_graphs()
(in
MembraneCenPairEnergy
)
initialize()
(in
MembraneEmbed
)
is_backbone()
(in
HBAtom
)
indicate_required_context_graphs()
(in
MembraneEnvEnergy
)
initialize()
(in
MembraneTopology
)
is_backbone()
(in
EnzCstTemplateRes
)
indicate_required_context_graphs()
(in
MembraneEnvPenalties
)
initialize()
(in
Membrane_FAEmbed
)
is_backbone()
(in
MatchConstraintFileInfo
)
indicate_required_context_graphs()
(in
MembraneEnvSmoothEnergy
)
initialize()
(in
ResidueNblistData
)
is_backbone_only_cst()
(in
EnzConstraintIO
)
indicate_required_context_graphs()
(in
MembraneLipo
)
initialize()
(in
FAElecContextData
)
is_barrel()
(in
Sheet
)
indicate_required_context_graphs()
(in
MissingEnergy
)
initialize()
(in
FA_ElecEnergy
)
is_base_paired()
(in
DNAParameters
)
indicate_required_context_graphs()
(in
NMerPSSMEnergy
)
initialize()
(in
FA_GrpElecEnergy
)
is_base_phosphate_atom_pair()
(in
rosetta.core.chemical.rna._core_chemical_rna_
)
indicate_required_context_graphs()
(in
NMerRefEnergy
)
initialize()
(in
GroupElec
)
is_beta_aa()
(in
ResidueType
)
indicate_required_context_graphs()
(in
NMerSVMEnergy
)
initialize()
(in
Coulomb
)
is_beta_aminoacid()
(in
KinematicMover
)
indicate_required_context_graphs()
(in
OmegaTetherEnergy
)
initialize()
(in
HBondDatabase
)
is_beta_sugar()
(in
CarbohydrateInfo
)
indicate_required_context_graphs()
(in
OneBodyEnergy
)
initialize()
(in
LKB_ResidueInfo
)
is_blank_seq()
(in
rosetta.protocols.stepwise.modeler.rna.helix._protocols_stepwise_modeler_rna_helix_
)
indicate_required_context_graphs()
(in
OtherPoseEnergy
)
initialize()
(in
RNA_DMS_LowResolutionPotential
)
is_bonded()
(in
Residue
)
indicate_required_context_graphs()
(in
P_AA_Energy
)
initialize()
(in
RNA_DMS_Potential
)
is_branch_lower_terminus()
(in
ResidueType
)
indicate_required_context_graphs()
(in
P_AA_pp_Energy
)
initialize()
(in
ABEGOManager
)
is_branch_lower_terminus()
(in
Residue
)
indicate_required_context_graphs()
(in
PackStatEnergy
)
initialize()
(in
HedgeArchive
)
is_branch_point()
(in
ResidueType
)
indicate_required_context_graphs()
(in
PairEnergy
)
initialize()
(in
IterativeAbrelax
)
is_branch_point()
(in
Residue
)
indicate_required_context_graphs()
(in
PeptideBondEnergy
)
initialize()
(in
IterativeBase
)
is_bulge()
(in
StrandPairing
)
indicate_required_context_graphs()
(in
PoissonBoltzmannEnergy
)
initialize()
(in
IterativeCentroid
)
is_bulged()
(in
RNA_DMS_LowResolutionPotential
)
indicate_required_context_graphs()
(in
ProClosureEnergy
)
initialize()
(in
IterativeFullatom
)
is_buried_ring()
(in
GenPharmacophore
)
indicate_required_context_graphs()
(in
ProQ_Energy
)
initialize()
(in
AbscriptLoopCloserCM
)
is_camelid()
(in
Ab_TemplateInfo
)
indicate_required_context_graphs()
(in
RG_Energy_Fast
)
initialize()
(in
AbscriptMover
)
is_camelid()
(in
AntibodyInfo
)
indicate_required_context_graphs()
(in
RG_LocalEnergy
)
initialize()
(in
ConstraintPreparer
)
is_cancelled()
(in
Batch
)
indicate_required_context_graphs()
(in
RMS_Energy
)
initialize()
(in
FragmentCM
)
is_canonical_D_aa()
(in
rosetta.core.chemical._core_chemical_
)
indicate_required_context_graphs()
(in
Rama2BOffsetEnergy
)
initialize()
(in
FragmentJumpCM
)
is_canonical_d_aminoacid()
(in
Ramachandran
)
indicate_required_context_graphs()
(in
RamachandranEnergy
)
initialize()
(in
RigidChunkCM
)
is_carbohydrate()
(in
ResidueType
)
indicate_required_context_graphs()
(in
RamachandranEnergy2B
)
initialize()
(in
StagePreparer
)
is_carbohydrate()
(in
Residue
)
indicate_required_context_graphs()
(in
ReferenceEnergy
)
initialize()
(in
StructPerturberCM
)
is_centroid()
(in
Conformation
)
indicate_required_context_graphs()
(in
ReferenceEnergyNoncanonical
)
initialize()
(in
DnaInterfaceMinMover
)
is_centroid()
(in
Pose
)
indicate_required_context_graphs()
(in
ResidualDipolarCouplingEnergy
)
initialize()
(in
ClientMover
)
is_charged()
(in
ResidueType
)
indicate_required_context_graphs()
(in
ResidualDipolarCouplingEnergy_Rohl
)
initialize()
(in
CoMTrackerCM
)
is_charged()
(in
Residue
)
indicate_required_context_graphs()
(in
SA_Energy
)
initialize()
(in
ScriptCM
)
is_chemical_bond()
(in
Edge
)
indicate_required_context_graphs()
(in
SecondaryStructureEnergy
)
initialize()
(in
BasePairStepLibrary
)
is_claim()
(in
EnvClaim
)
indicate_required_context_graphs()
(in
SequenceDependentRefEnergy
)
initialize()
(in
RNA_StructureParameters
)
is_close_chain_break()
(in
rosetta.protocols.stepwise.legacy.modeler.protein._protocols_stepwise_legacy_modeler_protein_
)
indicate_required_context_graphs()
(in
ShortRangeTwoBodyEnergy
)
initialize()
(in
ProteinSilentReport
)
is_coarse()
(in
ResidueType
)
indicate_required_context_graphs()
(in
SmoothCenPairEnergy
)
initialize()
(in
HelixPairing
)
is_coarse()
(in
Residue
)
indicate_required_context_graphs()
(in
SmoothEnvEnergy
)
initialize()
(in
SS_Info2
)
is_compatible()
(in
BBTorsionAndAnglesSRFD
)
indicate_required_context_graphs()
(in
SuckerEnergy
)
initialize()
(in
Sheet
)
is_compatible()
(in
BBTorsionSRFD
)
indicate_required_context_graphs()
(in
SymmetricLigandEnergy
)
initialize()
(in
SheetSet
)
is_compatible()
(in
DownJumpSRFD
)
indicate_required_context_graphs()
(in
TwoBodyEnergy
)
initialize()
(in
FlexbbInteractionGraph
)
is_compatible()
(in
FragData
)
indicate_required_context_graphs()
(in
UnfoldedStateEnergy
)
initialize()
(in
MinimalistFlexbbInteractionGraph
)
is_compatible()
(in
IndependentBBTorsionSRFD
)
indicate_required_context_graphs()
(in
WaterAdductHBondEnergy
)
initialize()
(in
OTFFlexbbInteractionGraph
)
is_compatible()
(in
SecstructSRFD
)
indicate_required_context_graphs()
(in
WaterAdductIntraEnergy
)
initialize()
(in
HybridizeFoldtreeDynamic
)
is_compatible()
(in
SingleResidueFragData
)
indicate_required_context_graphs()
(in
WholeStructureEnergy
)
initialize()
(in
AbstractArchiveBase
)
is_compatible()
(in
UpJumpSRFD
)
indicate_required_context_graphs()
(in
YHHPlanarityEnergy
)
initialize()
(in
ArchiveBase
)
is_conjugatable()
(in
Element
)
indicate_required_context_graphs()
(in
pHEnergy
)
initialize()
(in
EvaluatedArchive
)
is_conjugated()
(in
GasteigerAtomTypeData
)
indicate_required_context_graphs()
(in
SugarBackboneEnergy
)
initialize()
(in
NormalizedEvaluatedArchive
)
is_connect()
(in
ICoorAtomID
)
indicate_required_context_graphs()
(in
DFIRE_Energy
)
initialize()
(in
VarianceStatisticsArchive
)
is_conserved()
(in
PositionConservedResiduesStore
)
indicate_required_context_graphs()
(in
NVscore
)
initialize()
(in
LoopCM
)
is_continuous()
(in
Frame
)
indicate_required_context_graphs()
(in
OrbitalsScore
)
initialize()
(in
HitHasher
)
is_continuous()
(in
JumpingFrame
)
indicate_required_context_graphs()
(in
HolesEnergy
)
initialize()
(in
HitNeighborFinder
)
is_continuous()
(in
NonContinuousFrame
)
indicate_required_context_graphs()
(in
HolesEnergyRes
)
initialize()
(in
MatchCounter
)
is_copy()
(in
PerturbBundleOptions
)
indicate_required_context_graphs()
(in
SurfEnergy
)
initialize()
(in
OccupiedSpaceHash
)
is_covalent()
(in
EnzConstraintParameters
)
indicate_required_context_graphs()
(in
SurfVolEnergy
)
initialize()
(in
ActiveSiteGrid
)
is_covalent()
(in
MatchConstraintFileInfo
)
indicate_required_context_graphs()
(in
RG_Energy_RNA
)
initialize()
(in
LigandMotifSearch
)
is_cutpoint()
(in
FoldTree
)
indicate_required_context_graphs()
(in
RNA_BulgeEnergy
)
initialize()
(in
MotifSearch
)
is_cutpoint_closed()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
indicate_required_context_graphs()
(in
RNA_FullAtomStackingEnergy
)
initialize()
(in
MoveMapMover
)
is_cutpoint_closed_atom()
(in
rosetta.core.pose.rna._core_pose_rna_
)
indicate_required_context_graphs()
(in
RNA_JR_SuiteEnergy
)
initialize()
(in
NullMover
)
is_cutpoint_closed_torsion()
(in
rosetta.core.pose.rna._core_pose_rna_
)
indicate_required_context_graphs()
(in
RNA_LJ_BaseEnergy
)
initialize()
(in
IterativeVectorExpression
)
is_cutpoint_open()
(in
rosetta.core.pose.rna._core_pose_rna_
)
indicate_required_context_graphs()
(in
RNA_Mg_Energy
)
initialize()
(in
PocketGrid
)
is_cyclic()
(in
ResidueType
)
indicate_required_context_graphs()
(in
RNA_PairwiseLowResolutionEnergy
)
initialize()
(in
RBSegmentRelax
)
is_cyclic()
(in
CarbohydrateInfo
)
indicate_required_context_graphs()
(in
RNA_SugarCloseEnergy
)
initialize()
(in
UniformRigidBodyCM
)
is_d_aa()
(in
ResidueType
)
indicate_required_context_graphs()
(in
RNA_SuiteEnergy
)
initialize()
(in
InterfaceInfo
)
is_d_aminoacid()
(in
ReferenceEnergy
)
indicate_required_context_graphs()
(in
RNA_TorsionEnergy
)
initialize()
(in
DdGScan
)
is_D_sugar()
(in
CarbohydrateInfo
)
indicate_required_context_graphs()
(in
RNA_VDW_Energy
)
initialize()
(in
GenericMonteCarloMover
)
is_deriv_type()
(in
HBondTypeManager
)
indicate_required_context_graphs()
(in
StackElecEnergy
)
initialize()
(in
MinMover
)
is_directory()
(in
rosetta.utility.file._utility_file_
)
indicate_required_context_graphs()
(in
RNA_ChemicalShiftEnergy
)
initialize()
(in
SymMinMover
)
is_disulfide()
(in
CentroidDisulfidePotential
)
indicate_required_context_graphs()
(in
RNA_ChemicalShiftPotential
)
initialize()
(in
StepWisePoseAligner
)
is_disulfide_bond()
(in
rosetta.core.conformation._core_conformation_
)
indicate_required_context_graphs()
(in
RNA_ChemicalMappingEnergy
)
initialize()
(in
StepWiseMasterPacker
)
is_disulfide_bonded()
(in
ResidueType
)
indicate_required_context_graphs()
(in
RNA_DataBackboneEnergy
)
initialize()
(in
StepWiseMasterMover
)
is_DNA()
(in
ResidueType
)
indicate_required_context_graphs()
(in
FastSAXSEnergy
)
initialize()
(in
StepWiseCSA_JobDistributor
)
is_DNA()
(in
Residue
)
indicate_required_context_graphs()
(in
SAXSEnergy
)
initialize()
(in
StepWiseJobDistributor
)
is_dna()
(in
HBAtom
)
indicate_required_context_graphs()
(in
symEnergy
)
initialize()
(in
StepWiseMonteCarloJobDistributor
)
is_don_chem_type()
(in
HBondTypeManager
)
indicate_required_context_graphs()
(in
AACompositionEnergy
)
initialize()
(in
SelectResiduesByLayer
)
is_donor()
(in
AtomType
)
indicate_required_context_graphs()
(in
NatbiasSecondaryStructureEnergy
)
initialize_acc_strength()
(in
HBondDatabase
)
is_empty()
(in
ConstraintSet
)
indicate_required_context_graphs()
(in
EnsembleEnergy
)
initialize_all_atoms()
(in
AtomicContactCountFilter
)
is_empty()
(in
EnzConstraintParameters
)
indicate_required_context_graphs()
(in
InterchainEnvEnergy
)
initialize_and_sample_loops()
(in
HybridizeProtocol
)
is_end_element()
(in
EdgeList
)
indicate_required_context_graphs()
(in
InterchainPairEnergy
)
initialize_atom_numbers_sugar()
(in
RNA_DataBackboneEnergy
)
is_excluded()
(in
Scheduler
)
indicate_required_context_graphs()
(in
ResidualDipolarCouplingEnergyRigidSegments
)
initialize_atomid_map()
(in
rosetta.core.pose._core_pose_
)
is_experimental_technique()
(in
HeaderInformation
)
indicate_required_context_graphs()
(in
SpecialRotamerEnergy
)
initialize_atomid_map_AtomID()
(in
rosetta.core.pose._core_pose_
)
is_extended()
(in
Loop
)
indicate_required_context_graphs()
(in
PCS_Energy
)
initialize_atoms_for_which_we_need_new_dofs()
(in
rosetta.core.pose.rna._core_pose_rna_
)
is_fake()
(in
Atom
)
indicate_required_context_graphs()
(in
PcsEnergy
)
initialize_betaresidue_minima()
(in
TorsionSamplingKinematicPerturber
)
is_fake()
(in
Bond
)
indicate_required_context_graphs()
(in
PCS_Energy_Ts1
)
initialize_by_prepack()
(in
MultiPhosphateSampler
)
is_fake()
(in
Element
)
indicate_required_context_graphs()
(in
PCS_Energy_Ts2
)
initialize_constraints_from_file()
(in
ConstraintedOptimizationWeightFunc
)
is_false_string()
(in
rosetta.utility._utility_
)
indicate_required_context_graphs()
(in
PCS_Energy_Ts3
)
initialize_cross_chain()
(in
AtomicContactCountFilter
)
is_flushed()
(in
basic_otstream_T_char_std_char_traits_T_char_T__T
)
indicate_required_context_graphs()
(in
PCS_Energy_Ts4
)
initialize_cross_jump()
(in
AtomicContactCountFilter
)
is_foldtype()
(in
SheetFoldTypeManager
)
indicate_required_context_graphs()
(in
PDDFEnergy
)
initialize_data()
(in
BackboneGridSamplerHelper
)
is_fullatom()
(in
Conformation
)
indices()
(in
ResidueIndexIs
)
initialize_database()
(in
ReportToDB
)
is_fullatom()
(in
Pose
)
indices()
(in
ResidueIndexIsnt
)
initialize_disulfide_bonds()
(in
rosetta.core.pose._core_pose_
)
is_fullatom()
(in
FullAtomRNA_Fragments
)
indices()
(in
ResiduePDBIndexIs
)
initialize_dofs()
(in
FoldandDockClaimer
)
is_fullatom()
(in
RNA_Fragments
)
indices()
(in
ResiduePDBIndexIsnt
)
initialize_dofs()
(in
MembraneTopologyClaimer
)
is_furanose()
(in
CarbohydrateInfo
)
indices()
(in
BatchFeatures
)
initialize_dofs()
(in
TopologyClaimer
)
is_gap()
(in
Sequence
)
indices()
(in
ProtocolFeatures
)
initialize_don_strength()
(in
HBondDatabase
)
is_gapped()
(in
SequenceAlignment
)
individual_hbonds()
(in
TaskAwareScoreTypeFilter
)
initialize_dun02_aa_parameters()
(in
RotamerLibrary
)
is_gasteiger_atom_type()
(in
GasteigerAtomTypeData
)
individual_hbonds()
(in
SelectByDeltaScoreOperation
)
initialize_dun10_aa_parameters()
(in
RotamerLibrary
)
is_geo_dim_type()
(in
HBondTypeManager
)
info()
(in
ScoreFunction
)
initialize_espGrid()
(in
ElectrostaticpotentialGrid
)
is_geometry_initialized()
(in
SS_Base
)
info()
(in
RotamerDumpMover
)
initialize_extra_rotamer_flags_from_command_line()
(in
PackerTask
)
is_glob()
(in
FormFactor
)
info()
(in
AbrelaxMover
)
initialize_extra_rotamer_flags_from_command_line()
(in
PackerTask_
)
is_glycoside()
(in
CarbohydrateInfo
)
info()
(in
ClassicAbinitio
)
initialize_extra_rotamer_flags_from_command_line()
(in
ResidueLevelTask
)
is_good()
(in
ScoringScheme
)
info()
(in
ConstraintFragmentSampler
)
initialize_extra_rotamer_flags_from_command_line()
(in
ResidueLevelTask_
)
is_good()
(in
Template
)
info()
(in
DomainAssembly
)
initialize_filter()
(in
FlxbbDesign
)
is_good()
(in
Templates
)
info()
(in
DoubleLayerKinematicAbinitio
)
initialize_from()
(in
ScoreFunctionInfo
)
is_h2o()
(in
AtomType
)
info()
(in
FoldConstraints
)
initialize_from_command_line()
(in
UnboundRotamersOperation
)
is_H3_rama_kinked()
(in
rosetta.protocols.antibody._protocols_antibody_
)
info()
(in
FragmentSampler
)
initialize_from_command_line()
(in
PackerTask
)
is_haro()
(in
Atom
)
info()
(in
JumpingFoldConstraintsWrapper
)
initialize_from_command_line()
(in
PackerTask_
)
is_haro()
(in
AtomType
)
info()
(in
KinematicAbinitio
)
initialize_from_command_line()
(in
ResidueLevelTask
)
is_heavy()
(in
PoseBalls
)
info()
(in
KinematicTaskControl
)
initialize_from_command_line()
(in
ResidueLevelTask_
)
is_heavyatom()
(in
AtomType
)
info()
(in
LoopJumpFoldCst
)
initialize_from_command_line()
(in
MatcherTask
)
is_heavyatom()
(in
rosetta.core.scoring._core_scoring_
)
info()
(in
MembraneAbinitio
)
initialize_from_command_line()
(in
StepWiseModelerOptions
)
is_helix()
(in
SecondaryStructureSegmentFeatures
)
info()
(in
Protocol
)
initialize_from_command_line()
(in
StepWiseProteinModelerOptions
)
is_helix_jump()
(in
TemplateJumpSetup
)
info()
(in
ResolutionSwitcher
)
initialize_from_command_line()
(in
StepWiseRNA_ModelerOptions
)
is_heptose()
(in
CarbohydrateInfo
)
info()
(in
AbscriptLoopCloserCM
)
initialize_from_command_line()
(in
StepWiseMonteCarloOptions
)
is_het()
(in
PDBInfo
)
info()
(in
AbscriptMover
)
initialize_from_command_line()
(in
AllowedSeqposForGeomCst
)
is_hexose()
(in
CarbohydrateInfo
)
info()
(in
AbscriptStageMover
)
initialize_from_correspondence_file()
(in
EntityCorrespondence
)
is_hybridization_type()
(in
HBondTypeManager
)
info()
(in
ConstraintPreparer
)
initialize_from_enzcst_io()
(in
InvrotTreeNode
)
is_hydrogen()
(in
Atom
)
info()
(in
FragmentCM
)
initialize_from_enzcst_io_and_invrots()
(in
InvrotTreeNode
)
is_hydrogen()
(in
AtomType
)
info()
(in
FragmentJumpCM
)
initialize_from_file()
(in
ScoreFunction
)
is_hydrogen()
(in
ElecAtom
)
info()
(in
RigidChunkCM
)
initialize_from_file()
(in
Matcher
)
is_hydrogen()
(in
EtableAtom
)
info()
(in
StagePreparer
)
initialize_from_gridlig_file()
(in
ActiveSiteGrid
)
is_hydrogen()
(in
HBAtom
)
info()
(in
StructPerturberCM
)
initialize_from_input_file()
(in
DynamicAggregateFunctionDriver
)
is_hydrogen()
(in
MMEnergyTableAtom
)
info()
(in
InterfaceAnalyzerMover
)
initialize_from_input_file()
(in
EntityFunc
)
is_ideal_pose()
(in
rosetta.core.pose._core_pose_
)
info()
(in
LoopAnalyzerMover
)
initialize_from_matcher_task()
(in
CloudPDBWriter
)
is_ideal_position()
(in
rosetta.core.conformation._core_conformation_
)
info()
(in
PackStatMover
)
initialize_from_matcher_task()
(in
OutputWriter
)
is_ideal_position()
(in
rosetta.core.pose._core_pose_
)
info()
(in
AnchoredDesignMover
)
initialize_from_matcher_task()
(in
PDBWriter
)
is_identity
(in
xyzMatrix_Real
)
info()
(in
AnchoredPerturbMover
)
initialize_from_matcher_task()
(in
PoseMatchOutputWriter
)
is_identity
(in
xyzMatrix_SSize
)
info()
(in
AnchoredRefineMover
)
initialize_from_matcher_task()
(in
WriteKinemageOutputter
)
is_identity
(in
xyzMatrix_Size
)
info()
(in
AntibodyModelerProtocol
)
initialize_from_options()
(in
HBondOptions
)
is_identity
(in
xyzMatrix_double
)
info()
(in
CDRsMinPackMin
)
initialize_from_options()
(in
EnergyMethodOptions
)
is_identity
(in
xyzMatrix_float
)
info()
(in
CloseOneCDRLoop
)
initialize_from_options()
(in
FreeDOF_Options
)
is_identity()
(in
SequenceMapping
)
info()
(in
GraftCDRLoopsProtocol
)
initialize_from_options()
(in
NMerRefEnergy
)
is_identity()
(in
xyzMatrix_T_float_T
)
info()
(in
GraftOneCDRLoop
)
initialize_from_options()
(in
RNA_EnergyMethodOptions
)
is_identity_ignore_gaps()
(in
SequenceMapping
)
info()
(in
GraftedStemOptimizer
)
initialize_from_residue()
(in
LigandConformerBuilder
)
is_in_bin()
(in
BinTransitionCalculator
)
info()
(in
H3CterInsert
)
initialize_from_residue()
(in
RigidLigandBuilder
)
is_in_list()
(in
rosetta.protocols.generalized_kinematic_closure._protocols_generalized_kinematic_closure_
)
info()
(in
H3PerturbCCD
)
initialize_from_residue()
(in
OriginalBackboneBuildPoint
)
is_in_taboo_map()
(in
KinematicMover
)
info()
(in
H3RefineCCD
)
initialize_from_residue()
(in
LigandConformer
)
is_inf()
(in
rosetta.utility._utility_
)
info()
(in
LHRepulsiveRamp
)
initialize_from_residue_type()
(in
UpstreamResTypeGeometry
)
is_initialized()
(in
ProteinSilentReport
)
info()
(in
ModelCDRH3
)
initialize_from_residues()
(in
ResiduePairNeighborList
)
is_initialized()
(in
BluePrintBDR
)
info()
(in
RefineBetaBarrel
)
initialize_from_rotation_matrix()
(in
EulerAngles
)
is_inside()
(in
IntervalSet_T_double_T
)
info()
(in
RefineOneCDRLoop
)
initialize_from_task()
(in
Matcher
)
is_interface
(in
Type
)
info()
(in
RefineOneCDRLoopCentroid
)
initialize_from_tokens()
(in
ALLAA
)
is_interface
(in
InterfaceInfo
)
info()
(in
CDRDihedralConstraintMover
)
initialize_from_tokens()
(in
ALLAAwc
)
is_interface()
(in
Interface
)
info()
(in
ParatopeEpitopeSiteConstraintMover
)
initialize_from_tokens()
(in
ALLAAxc
)
is_interface()
(in
InterfaceInfo
)
info()
(in
ParatopeSiteConstraintMover
)
initialize_from_tokens()
(in
APOLA
)
is_interface_ddg()
(in
ddGMover
)
info()
(in
AntibodyDesignMover
)
initialize_from_tokens()
(in
APOLAR
)
is_interface_vector()
(in
rosetta.protocols.ligand_docking.ligand_options._protocols_ligand_docking_ligand_options_
)
info()
(in
AntibodyDesignProtocol
)
initialize_from_tokens()
(in
AUTO
)
is_internal()
(in
AtomICoor
)
info()
(in
MutateFrameworkForCluster
)
initialize_from_tokens()
(in
EMPTY
)
is_internal()
(in
ICoorAtomID
)
info()
(in
AntibodyModeler
)
initialize_from_tokens()
(in
EX
)
is_internal()
(in
StepWiseBasicWorkingParameters
)
info()
(in
CDRH3Modeler
)
initialize_from_tokens()
(in
EX_CUTOFF
)
is_inwards()
(in
Pairing
)
info()
(in
CloseOneMover
)
initialize_from_tokens()
(in
FIX_HIS_TAUTOMER
)
is_jump()
(in
Edge
)
info()
(in
GraftMover
)
initialize_from_tokens()
(in
NATAA
)
is_jump()
(in
Atom
)
info()
(in
GraftOneMover
)
initialize_from_tokens()
(in
NATRO
)
is_jump()
(in
BondedAtom
)
info()
(in
LoopRlxMover
)
initialize_from_tokens()
(in
NC
)
is_jump()
(in
JumpAtom
)
info()
(in
BackrubMover
)
initialize_from_tokens()
(in
NOTAA
)
is_jump()
(in
StepWiseMove
)
info()
(in
BackrubProtocol
)
initialize_from_tokens()
(in
NO_ADDUCTS
)
is_jump_point()
(in
FoldTree
)
info()
(in
BackrubSidechainMover
)
initialize_from_tokens()
(in
PIKAA
)
is_ketose()
(in
CarbohydrateInfo
)
info()
(in
CanonicalSamplingMover
)
initialize_from_tokens()
(in
PIKNA
)
is_known_atom()
(in
FormFactorManager
)
info()
(in
FixedTemperatureController
)
initialize_from_tokens()
(in
PIKRNA
)
is_l_aa()
(in
ResidueType
)
info()
(in
MetricRecorder
)
initialize_from_tokens()
(in
POLAR
)
is_L_sugar()
(in
CarbohydrateInfo
)
info()
(in
MetropolisHastingsMover
)
initialize_from_tokens()
(in
RESET
)
is_ladder()
(in
StrandPairing
)
info()
(in
ParallelTempering
)
initialize_from_tokens()
(in
ResfileCommand
)
is_leaf()
(in
KDNode
)
info()
(in
ProgressBarObserver
)
initialize_from_tokens()
(in
SCAN
)
is_lefthanded()
(in
BetaAlphaBetaMotif
)
info()
(in
SidechainMetropolisHastingsMover
)
initialize_from_tokens()
(in
TARGET
)
is_legal_greater_than()
(in
rosetta.numeric.kdtree._numeric_kdtree_
)
info()
(in
SimulatedTempering
)
initialize_from_tokens()
(in
USE_INPUT_SC
)
is_legal_kdtree_below_node()
(in
rosetta.numeric.kdtree._numeric_kdtree_
)
info()
(in
TemperatureController
)
initialize_ga_randomizer_from_entity_task()
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
is_legal_less_than()
(in
rosetta.numeric.kdtree._numeric_kdtree_
)
info()
(in
TemperingBase
)
initialize_HBEval()
(in
HBondDatabase
)
is_ligand()
(in
ResidueType
)
info()
(in
ThermodynamicMover
)
initialize_HBFadeInterval()
(in
HBondDatabase
)
is_ligand()
(in
Residue
)
info()
(in
ThermodynamicObserver
)
initialize_HBPoly1D()
(in
HBondDatabase
)
is_ligand_heavyatom()
(in
rosetta.core.scoring._core_scoring_
)
info()
(in
TrialCounterObserver
)
initialize_hbs()
(in
rosetta.core.pose.ncbb._core_pose_ncbb_
)
is_ligand_heavyatom_residues()
(in
rosetta.core.scoring._core_scoring_
)
info()
(in
AssignToClustersMover
)
initialize_header_information()
(in
FileData
)
is_ligand_present()
(in
FlexPepDockingFlags
)
info()
(in
ClusterBase
)
INITIALIZE_HIERARCHY
(in
rosetta.basic
)
is_lipid()
(in
ResidueType
)
info()
(in
ClusterPhilStyle
)
INITIALIZE_HIERARCHY
(in
rosetta.basic._basic_
)
is_literal()
(in
ArithmeticASTValue
)
info()
(in
ClusterPhilStyle_Loop
)
INITIALIZE_HIERARCHY
(in
ProfTag
)
is_loaded()
(in
DFIRE_Potential
)
info()
(in
ClusterPhilStyle_PoseReporter
)
initialize_input_streams()
(in
rosetta.protocols.stepwise.modeler.protein._protocols_stepwise_modeler_protein_
)
is_loop()
(in
Edge
)
info()
(in
EnsembleConstraints
)
initialize_input_streams_with_residue_info()
(in
rosetta.protocols.stepwise.modeler.protein._protocols_stepwise_modeler_protein_
)
is_loop()
(in
HelixCapFeatures
)
info()
(in
EnsembleConstraints_Simple
)
initialize_logging()
(in
rosetta.logging_support
)
is_loop()
(in
SecondaryStructureSegmentFeatures
)
info()
(in
GatherPosesMover
)
initialize_native_and_align_pose()
(in
rosetta.protocols.stepwise.setup._protocols_stepwise_setup_
)
is_loop_residue()
(in
Loops
)
info()
(in
CoarseRNA_LoopCloser
)
initialize_ncbbs()
(in
rosetta.core.pose.ncbb._core_pose_ncbb_
)
is_lower_cutpoint()
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
info()
(in
ExtraThreadingMover
)
initialize_o2prime_pack_scorefxn()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
is_lower_terminus()
(in
ResidueType
)
info()
(in
LoopRelaxMover
)
initialize_oops()
(in
rosetta.core.pose.ncbb._core_pose_ncbb_
)
is_lower_terminus()
(in
Residue
)
info()
(in
LoopRelaxThreadingMover
)
initialize_pack_scorefxn()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
is_lower_terminus()
(in
rosetta.core.pose._core_pose_
)
info()
(in
MultiThreadingMover
)
initialize_parameters()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
is_magnesium()
(in
RNA_ScoringInfo
)
info()
(in
PartialThreadingMover
)
initialize_parameters()
(in
ProfSimScoringScheme
)
is_member()
(in
Sheet
)
info()
(in
RecoverSideChainsMover
)
initialize_pose()
(in
ReportToDB
)
is_member()
(in
StrandPairing
)
info()
(in
StealLigandMover
)
initialize_pose_and_other_poses_from_command_line()
(in
rosetta.protocols.stepwise.setup._protocols_stepwise_setup_
)
is_membrane()
(in
ResidueType
)
info()
(in
StealSideChainsMover
)
initialize_pose_if_empty()
(in
StepWiseMasterMover
)
is_membrane()
(in
Conformation
)
info()
(in
ThreadingMover
)
initialize_random_chunks()
(in
RNA_ChunkLibrary
)
is_mergeable()
(in
Frame
)
info()
(in
ContactMap
)
initialize_relevant_residues()
(in
ReportToDB
)
is_metal()
(in
ResidueType
)
info()
(in
FitBfactorsMover
)
initialize_reporters()
(in
ReportToDB
)
is_metal()
(in
Residue
)
info()
(in
LoadDensityMapMover
)
initialize_rna_chunk_library()
(in
RNA_ChunkLibrary
)
is_metalbinding()
(in
ResidueType
)
info()
(in
RecomputeDensityMapMover
)
initialize_sample_scorefxn()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
is_metalbinding()
(in
Residue
)
info()
(in
SetCrystWeightMover
)
initialize_samples()
(in
BundleGridSamplerHelper
)
is_methylated_cterminus()
(in
ResidueType
)
info()
(in
SetRefinementOptionsMover
)
initialize_simulation()
(in
BackrubMover
)
is_moving_res()
(in
StepWiseWorkingParameters
)
info()
(in
TagPoseWithRefinementStatsMover
)
initialize_simulation()
(in
BackrubSidechainMover
)
is_multi_trial()
(in
BackrubMover
)
info()
(in
UpdateSolventMover
)
initialize_simulation()
(in
AsyncMPITemperingBase
)
is_multi_trial()
(in
BackrubSidechainMover
)
info()
(in
CreateAngleConstraint
)
initialize_simulation()
(in
BiasEnergy
)
is_multi_trial()
(in
ThermodynamicMover
)
info()
(in
CreateDistanceConstraint
)
initialize_simulation()
(in
DbTrajectoryRecorder
)
is_multi_trial()
(in
BalancedKicMover
)
info()
(in
CreateTorsionConstraint
)
initialize_simulation()
(in
FixedTemperatureController
)
is_multi_trial()
(in
RigidBodyDeterministicSpinMover
)
info()
(in
DeclareBond
)
initialize_simulation()
(in
HamiltonianExchange
)
is_multi_trial()
(in
RigidBodyDofPerturbMover
)
info()
(in
PeptideStubMover
)
initialize_simulation()
(in
MetricRecorder
)
is_multi_trial()
(in
RigidBodyDofRandomTransMover
)
info()
(in
ddGMover
)
initialize_simulation()
(in
ParallelTempering
)
is_multi_trial()
(in
RigidBodyDofRandomizeMover
)
info()
(in
GreedyOptMutationMover
)
initialize_simulation()
(in
ProgressBarObserver
)
is_multi_trial()
(in
RigidBodyDofSeqPerturbMover
)
info()
(in
ParetoOptMutationMover
)
initialize_simulation()
(in
SilentTrajectoryRecorder
)
is_multi_trial()
(in
RigidBodyDofSeqRandomizeMover
)
info()
(in
DesignProteinBackboneAroundDNA
)
initialize_simulation()
(in
SimulatedTempering
)
is_multi_trial()
(in
RigidBodyDofSeqTransMover
)
info()
(in
DnaInterfaceMinMover
)
initialize_simulation()
(in
TemperatureController
)
is_multi_trial()
(in
RigidBodyDofTransMover
)
info()
(in
DnaInterfaceMultiStateDesign
)
initialize_simulation()
(in
TemperingBase
)
is_multi_trial()
(in
RigidBodyMover
)
info()
(in
DnaInterfacePacker
)
initialize_simulation()
(in
ThermodynamicMover
)
is_multi_trial()
(in
RigidBodyPerturbMover
)
info()
(in
SeparateDnaFromNonDna
)
initialize_simulation()
(in
ThermodynamicObserver
)
is_multi_trial()
(in
RigidBodyPerturbNoCenterMover
)
info()
(in
ConformerSwitchMover
)
initialize_simulation()
(in
TrajectoryRecorder
)
is_multi_trial()
(in
RigidBodyPerturbRandomJumpMover
)
info()
(in
DockMCMCycle
)
initialize_simulation()
(in
TrialCounterObserver
)
is_multi_trial()
(in
RigidBodyRandomizeMover
)
info()
(in
DockMCMProtocol
)
initialize_simulation()
(in
BalancedKicMover
)
is_multi_trial()
(in
RigidBodySpinMover
)
info()
(in
DockMinMover
)
initialize_simulation()
(in
RigidBodyDeterministicSpinMover
)
is_multi_trial()
(in
RigidBodyTransMover
)
info()
(in
DockSetupMover
)
initialize_simulation()
(in
RigidBodyDofPerturbMover
)
is_multi_trial()
(in
UniformRigidBodyMover
)
info()
(in
DockingEnsemblePrepackProtocol
)
initialize_simulation()
(in
RigidBodyDofRandomTransMover
)
is_multi_trial()
(in
UniformSphereTransMover
)
info()
(in
DockingHighRes
)
initialize_simulation()
(in
RigidBodyDofRandomizeMover
)
is_multi_trial()
(in
BBConRotMover
)
info()
(in
DockingHighResLegacy
)
initialize_simulation()
(in
RigidBodyDofSeqPerturbMover
)
is_multi_trial()
(in
BBG8T3AMover
)
info()
(in
DockingInitialPerturbation
)
initialize_simulation()
(in
RigidBodyDofSeqRandomizeMover
)
is_multi_trial()
(in
BBGaussianMover
)
info()
(in
DockingLowRes
)
initialize_simulation()
(in
RigidBodyDofSeqTransMover
)
is_multi_trial()
(in
BackboneMover
)
info()
(in
DockingLowResEnsemble
)
initialize_simulation()
(in
RigidBodyDofTransMover
)
is_multi_trial()
(in
ShearMover
)
info()
(in
DockingPrepackProtocol
)
initialize_simulation()
(in
RigidBodyMover
)
is_multi_trial()
(in
SmallMover
)
info()
(in
DockingProtocol
)
initialize_simulation()
(in
RigidBodyPerturbMover
)
is_multi_trial()
(in
JumpRotamerSidechainMover
)
info()
(in
DockingSlideIntoContact
)
initialize_simulation()
(in
RigidBodyPerturbNoCenterMover
)
is_multi_trial()
(in
PerturbChiSidechainMover
)
info()
(in
EllipsoidalRandomizationMover
)
initialize_simulation()
(in
RigidBodyPerturbRandomJumpMover
)
is_multi_trial()
(in
PerturbRotamerSidechainMover
)
info()
(in
FaDockingSlideIntoContact
)
initialize_simulation()
(in
RigidBodyRandomizeMover
)
is_multi_trial()
(in
SidechainMCMover
)
info()
(in
InterfaceSidechainMinMover
)
initialize_simulation()
(in
RigidBodySpinMover
)
is_multi_trial()
(in
SidechainMover
)
info()
(in
SidechainMinMover
)
initialize_simulation()
(in
RigidBodyTransMover
)
is_multi_trial()
(in
SidechainMoverBase
)
info()
(in
TemperedDocking
)
initialize_simulation()
(in
UniformRigidBodyMover
)
is_multicomponent()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
info()
(in
MPDockingMover
)
initialize_simulation()
(in
UniformSphereTransMover
)
is_mutant_calc_complete()
(in
ddGMover
)
info()
(in
MPDockingSetupMover
)
initialize_simulation()
(in
BBConRotMover
)
is_N_acetylated()
(in
CarbohydrateInfo
)
info()
(in
SaneDockingProtocol
)
initialize_simulation()
(in
BBG8T3AMover
)
is_NA()
(in
ResidueType
)
info()
(in
AddAssemblyConstraints
)
initialize_simulation()
(in
BBGaussianMover
)
is_NA()
(in
Residue
)
info()
(in
AssembleLinkerMover
)
initialize_simulation()
(in
BackboneMover
)
is_NA()
(in
rosetta.core.io.pdb._core_io_pdb_
)
info()
(in
CombineChainsMover
)
initialize_simulation()
(in
ShearMover
)
is_nan()
(in
rosetta.utility._utility_
)
info()
(in
PostDockAssemblyScorer
)
initialize_simulation()
(in
SmallMover
)
is_native_pairing()
(in
PairingStatistics
)
info()
(in
BfactorFittingMover
)
initialize_simulation()
(in
JumpRotamerSidechainMover
)
is_nbr_atom()
(in
rosetta.core.scoring._core_scoring_
)
info()
(in
DensityMorphingMover
)
initialize_simulation()
(in
PerturbChiSidechainMover
)
is_non_peptide_heavy_atom()
(in
rosetta.core.scoring._core_scoring_
)
info()
(in
ReportFSC
)
initialize_simulation()
(in
PerturbRotamerSidechainMover
)
is_nonose()
(in
CarbohydrateInfo
)
info()
(in
ScaleMapIntensities
)
initialize_simulation()
(in
SidechainMCMover
)
is_nonpivot_residue()
(in
ClosureProblem
)
info()
(in
SetupForDensityScoringMover
)
initialize_simulation()
(in
SidechainMover
)
is_normalized()
(in
Quaternion_Real
)
info()
(in
ClientMover
)
initialize_simulation()
(in
SidechainMoverBase
)
is_normalized()
(in
Quaternion_double
)
info()
(in
CoMTrackerCM
)
initialize_simulation()
(in
SimulateMPI
)
is_normalized()
(in
Quaternion_float
)
info()
(in
EnvMover
)
initialize_ss()
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
is_normalized()
(in
xyzTriple_Real
)
info()
(in
ScriptCM
)
initialize_starting_rama_scores()
(in
RamaCheckBase
)
is_normalized()
(in
xyzTriple_SSize
)
info()
(in
MultipleDomainMover
)
initialize_stub()
(in
rosetta.protocols.toolbox.rigid_body._protocols_toolbox_rigid_body_
)
is_normalized()
(in
xyzTriple_Size
)
info()
(in
RNA_DeNovoProtocol
)
initialize_sturm()
(in
rosetta.numeric.kinematic_closure._numeric_kinematic_closure_
)
is_normalized()
(in
xyzTriple_double
)
info()
(in
RNA_FragmentMover
)
initialize_tag_is_done()
(in
rosetta.core.io.silent._core_io_silent_
)
is_normalized()
(in
xyzTriple_float
)
info()
(in
RNA_LoopCloser
)
initialize_task_factory()
(in
RotamerRecoveryFeatures
)
is_normalized()
(in
xyzVector_Real
)
info()
(in
RNA_Minimizer
)
initialize_task_from_entity_resfile_and_secondary_resfile()
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
is_normalized()
(in
xyzVector_SSize
)
info()
(in
RNA_Relaxer
)
initialize_tree_nodes_from_enzcst_io()
(in
InvrotTarget
)
is_normalized()
(in
xyzVector_Size
)
info()
(in
ReportToDB
)
initialize_typGrid()
(in
ElectrostaticpotentialGrid
)
is_normalized()
(in
xyzVector_double
)
info()
(in
TrajectoryReportToDB
)
initialize_upstream_residue()
(in
LigandConformerBuilder
)
is_normalized()
(in
xyzVector_float
)
info()
(in
SetupForFibrilMover
)
initialize_upstream_residue()
(in
RigidLigandBuilder
)
is_normally_connected()
(in
Ramachandran
)
info()
(in
BluePrintBDR
)
initialize_weights()
(in
TrialMover
)
is_null()
(in
BBDepCartBondedParameters
)
info()
(in
CircularPermutation
)
initialize_weights()
(in
EvaluatedTrialMover
)
is_null()
(in
BBIndepCartBondedParameters
)
info()
(in
MatchResiduesMover
)
initialize_xyz_parameters()
(in
rosetta.protocols.stepwise.modeler.rna.rigid_body._protocols_stepwise_modeler_rna_rigid_body_
)
is_null()
(in
CartBondedParameters
)
info()
(in
SheetConstraintsRCG
)
InitializeByBins
(in
rosetta.protocols.simple_moves.bin_transitions._protocols_simple_moves_bin_transitions_
)
is_num_in_list()
(in
rosetta.protocols.farna._protocols_farna_
)
info()
(in
SetAACompositionPotential
)
InitializeByBinsAP
(in
rosetta.protocols.simple_moves.bin_transitions._protocols_simple_moves_bin_transitions_
)
is_O_acetylated()
(in
CarbohydrateInfo
)
info()
(in
SetSecStructEnergies
)
InitializeByBinsCAP
(in
rosetta.protocols.simple_moves.bin_transitions._protocols_simple_moves_bin_transitions_
)
is_observing()
(in
PDBInfo
)
info()
(in
FlexPacker
)
InitializeByBinsCreator
(in
rosetta.protocols.simple_moves.bin_transitions._protocols_simple_moves_bin_transitions_
)
is_observing()
(in
PoseMetricContainer
)
info()
(in
FlexPepDockingAbInitio
)
InitializeByBinsCreatorAP
(in
rosetta.protocols.simple_moves.bin_transitions._protocols_simple_moves_bin_transitions_
)
is_octose()
(in
CarbohydrateInfo
)
info()
(in
FlexPepDockingLowRes
)
InitializeByBinsCreatorCAP
(in
rosetta.protocols.simple_moves.bin_transitions._protocols_simple_moves_bin_transitions_
)
is_old_RNA()
(in
rosetta.core.io.pdb._core_io_pdb_
)
info()
(in
FlexPepDockingProtocol
)
initialized()
(in
MembraneTopology
)
is_omega_torsion()
(in
rosetta.core.pose.carbohydrates._core_pose_carbohydrates_
)
info()
(in
FloppyTailMover
)
initialized()
(in
HBondDatabase
)
is_on()
(in
Timer
)
info()
(in
FlxbbDesign
)
initialized()
(in
BranchAngleOptimizer
)
is_optE_type_name()
(in
OptEPositionDataFactory
)
info()
(in
FlxbbDesignPack
)
initialized()
(in
DnaInterfaceFinder
)
is_original_type()
(in
ResidueLevelTask
)
info()
(in
InterlockAroma
)
initialized()
(in
DnaInterfacePacker
)
is_original_type()
(in
ResidueLevelTask_
)
info()
(in
BDR
)
initialized()
(in
RNA_SecStructInfo
)
is_orthogonal()
(in
Stub
)
info()
(in
VarLengthBuild
)
initialized()
(in
RBSegment
)
is_orthonormal()
(in
rosetta.core.scoring.dna._core_scoring_dna_
)
info()
(in
RemodelConstraintGenerator
)
initialized()
(in
PerNativeRRReporterHuman
)
is_outwards()
(in
Pairing
)
info()
(in
NonlocalFrags
)
InitializeExtraRotsFromCommandline
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
is_pair()
(in
Interface
)
info()
(in
TorsionFragmentMover
)
InitializeExtraRotsFromCommandlineAP
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
is_pair()
(in
InterfaceInfo
)
info()
(in
GeneralizedKIC
)
InitializeExtraRotsFromCommandlineCAP
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
is_parallel()
(in
Pairing
)
info()
(in
AnchoredGraftMover
)
InitializeExtraRotsFromCommandlineCreator
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
is_parallel()
(in
DimerPairing
)
info()
(in
CCDEndsGraftMover
)
InitializeExtraRotsFromCommandlineCreatorAP
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
is_parallel()
(in
HelixPairing
)
info()
(in
GraftMoverBase
)
InitializeExtraRotsFromCommandlineCreatorCAP
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
is_parallel()
(in
StrandPairing
)
info()
(in
DeleteRegionMover
)
InitializeFromCommandline
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
is_patched()
(in
AnnotatedSequence
)
info()
(in
InsertPoseIntoPoseMover
)
InitializeFromCommandlineAP
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
is_pentose()
(in
CarbohydrateInfo
)
info()
(in
KeepRegionMover
)
InitializeFromCommandlineCAP
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
is_peptide()
(in
Edge
)
info()
(in
ReplaceRegionMover
)
InitializeFromCommandlineCreator
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
is_peptoid()
(in
ResidueType
)
info()
(in
BackboneGridSampler
)
InitializeFromCommandlineCreatorAP
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
is_peptoid()
(in
Residue
)
info()
(in
BundleGridSampler
)
InitializeFromCommandlineCreatorCAP
(in
rosetta.core.pack.task.operation._core_pack_task_operation_
)
is_perturbable()
(in
PerturbBundleOptions
)
info()
(in
FitSimpleHelix
)
initOrbitalShift()
(in
PDB
)
is_phi_torsion()
(in
rosetta.core.pose.carbohydrates._core_pose_carbohydrates_
)
info()
(in
MakeBundle
)
Inline_File_Provider
(in
rosetta.utility._utility_
)
is_phosphate()
(in
RNA_ResidueType
)
info()
(in
MakeBundleHelix
)
Inline_File_Provider_Hook
(in
rosetta.utility._utility_
)
is_pivot_residue()
(in
ClosureProblem
)
info()
(in
PerturbBundle
)
Inline_File_Provider_HookAP
(in
rosetta.utility._utility_
)
is_polar()
(in
ResidueType
)
info()
(in
PerturbBundleHelix
)
Inline_File_Provider_HookCAP
(in
rosetta.utility._utility_
)
is_polar()
(in
Residue
)
info()
(in
BackboneTorsionPerturbation
)
Inline_File_ProviderAP
(in
rosetta.utility._utility_
)
is_polar_hydrogen()
(in
Atom
)
info()
(in
BackboneTorsionSampler
)
Inline_File_ProviderCAP
(in
rosetta.utility._utility_
)
is_polar_hydrogen()
(in
AtomType
)
info()
(in
CartesianHybridize
)
inner_cycles()
(in
LoopMover_Refine_CCD
)
is_polymer()
(in
ResidueType
)
info()
(in
CartesianSampler
)
inner_job()
(in
Job
)
is_polymer()
(in
Residue
)
info()
(in
ChunkTrialMover
)
inner_job_nonconst()
(in
Job
)
is_polymer()
(in
Edge
)
info()
(in
DomainAssembly
)
inner_product()
(in
xyzTriple_Real
)
is_polymer_bonded()
(in
Residue
)
info()
(in
FoldTreeHybridize
)
inner_product()
(in
xyzTriple_SSize
)
is_polymer_heavyatom()
(in
rosetta.core.scoring._core_scoring_
)
info()
(in
HybridizeProtocol
)
inner_product()
(in
xyzTriple_Size
)
is_polymer_lower()
(in
ICoorAtomID
)
info()
(in
InsertChunkMover
)
inner_product()
(in
xyzTriple_double
)
is_polymer_upper()
(in
ICoorAtomID
)
info()
(in
MRMover
)
inner_product()
(in
xyzTriple_float
)
is_position_conserved_residue()
(in
rosetta.core.pose._core_pose_
)
info()
(in
WeightedFragmentSmoothTrialMover
)
inner_product()
(in
xyzVector_Real
)
is_potential_old_DNA()
(in
rosetta.core.io.pdb._core_io_pdb_
)
info()
(in
WeightedFragmentTrialMover
)
inner_product()
(in
xyzVector_SSize
)
is_pre_proline()
(in
StepWiseWorkingParameters
)
info()
(in
IdealizeMover
)
inner_product()
(in
xyzVector_Size
)
is_prepend()
(in
StepWiseBasicWorkingParameters
)
info()
(in
BalancedKicMover
)
inner_product()
(in
xyzVector_double
)
is_prepend_map()
(in
StepWiseWorkingParameters
)
info()
(in
KicMover
)
inner_product()
(in
xyzVector_float
)
is_properly_initialized()
(in
ddGMover
)
info()
(in
AddHydrogen
)
InnerJob
(in
rosetta.protocols.jd2._protocols_jd2_
)
is_protected()
(in
Conformation
)
info()
(in
AddHydrogens
)
InnerJobAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
is_protected()
(in
SymmetricConformation
)
info()
(in
CompoundTranslate
)
InnerJobCAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
is_protected()
(in
ProtectedConformation
)
info()
(in
ComputeLigandRDF
)
InnerMultiThreadingJob
(in
rosetta.protocols.jd2._protocols_jd2_
)
is_protein()
(in
ResidueType
)
info()
(in
FinalMinimizer
)
InnerMultiThreadingJobAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
is_protein()
(in
Residue
)
info()
(in
GrowLigand
)
InnerMultiThreadingJobCAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
is_protein()
(in
HBAtom
)
info()
(in
HighResDocker
)
inplace_product()
(in
rosetta.numeric._numeric_
)
is_protein()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
info()
(in
InterfaceScoreCalculator
)
inplace_transpose_product()
(in
rosetta.numeric._numeric_
)
is_protein_backbone()
(in
rosetta.core.scoring._core_scoring_
)
info()
(in
LigandDesign
)
inprogress()
(in
BaseJobDistributor
)
is_protein_backbone_including_O()
(in
rosetta.core.scoring._core_scoring_
)
info()
(in
MinimizeBackbone
)
input_conformation()
(in
OriginalBackboneBuildPoint
)
is_protein_CA()
(in
rosetta.core.scoring._core_scoring_
)
info()
(in
MinimizeLigand
)
INPUT_DOMAIN
(in
rosetta.core.pose.full_model_info
)
is_protein_CA_or_CB()
(in
rosetta.core.scoring._core_scoring_
)
info()
(in
RandomConformerMover
)
INPUT_DOMAIN
(in
FullModelParameterType
)
is_protein_sidechain_heavyatom()
(in
rosetta.core.scoring._core_scoring_
)
info()
(in
RandomConformers
)
INPUT_DOMAIN
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
is_proton_chi()
(in
ResidueType
)
info()
(in
RigidSearchMover
)
input_domain_map()
(in
FullModelInfo
)
is_pseudo_bonded()
(in
Residue
)
info()
(in
Rotate
)
input_legrand_sasa_dats()
(in
rosetta.core.scoring.sasa._core_scoring_sasa_
)
is_psi_torsion()
(in
rosetta.core.pose.carbohydrates._core_pose_carbohydrates_
)
info()
(in
Rotates
)
input_res()
(in
InputStreamWithResidueInfo
)
is_purine()
(in
rosetta.core.chemical.rna._core_chemical_rna_
)
info()
(in
SlideTogether
)
input_res_vectors()
(in
StepWiseWorkingParameters
)
is_pyranose()
(in
CarbohydrateInfo
)
info()
(in
StartFrom
)
input_sasa_dats()
(in
rosetta.core.scoring._core_scoring_
)
is_registered()
(in
Environment
)
info()
(in
TetherLigand
)
input_source()
(in
GenericJobInputter
)
is_residue_type_recognized()
(in
rosetta.core.io.pdb._core_io_pdb_
)
info()
(in
Transform
)
input_source()
(in
ThreadingJobInputter
)
is_residue_typeset()
(in
Conformation
)
info()
(in
Translate
)
input_source()
(in
DatabaseJobInputter
)
is_residues_in_contact()
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
info()
(in
UnconstrainedTorsionsMover
)
input_source()
(in
AtomTreeDiffJobInputter
)
is_reversible()
(in
ResPairMotif
)
info()
(in
WriteLigandMolFile
)
input_source()
(in
BatchJobInputter
)
is_RNA()
(in
ResidueType
)
info()
(in
LoopBuildMover
)
input_source()
(in
JD2ResourceManagerJobInputter
)
is_RNA()
(in
Residue
)
info()
(in
LoopmodelWrapper
)
input_source()
(in
JobInputter
)
is_RNA_base()
(in
RNA_ResidueType
)
info()
(in
LoopBuilder
)
input_source()
(in
LazySilentFileJobInputter
)
is_RNA_base_atom()
(in
RNA_ResidueType
)
info()
(in
LoopModeler
)
input_source()
(in
PDBJobInputter
)
is_rna_chainbreak()
(in
rosetta.core.pose.rna._core_pose_rna_
)
info()
(in
LoopMover
)
input_source()
(in
PoseInputStreamJobInputter
)
is_root()
(in
FoldTree
)
info()
(in
LoopProtocol
)
input_source()
(in
ScreeningJobInputter
)
is_root()
(in
KDNode
)
info()
(in
MinimizationRefiner
)
input_source()
(in
SilentFileJobInputter
)
is_rot_sample_name()
(in
rosetta.core.pack.task._core_pack_task_
)
info()
(in
RepackingRefiner
)
input_source()
(in
MakeRotLibJobInputter
)
is_same_sugar_pucker()
(in
rosetta.protocols.stepwise.legacy.modeler.rna._protocols_stepwise_legacy_modeler_rna_'
)
info()
(in
RotamerTrialsRefiner
)
input_source()
(in
ParserJobInputter
)
is_sc()
(in
HBCPData
)
info()
(in
LegacyKicSampler
)
INPUT_STREAM
(in
rosetta.protocols.stepwise.sampler
)
is_sc_bb_clash()
(in
ClashBasedRepackShellSelector
)
info()
(in
AcceptanceCheck
)
INPUT_STREAM
(in
rosetta.protocols.stepwise.sampler._protocols_stepwise_sampler_
)
is_sc_sc_clash()
(in
ClashBasedRepackShellSelector
)
info()
(in
LoopFilter
)
INPUT_STREAM
(in
StepWiseSamplerType
)
is_scatom()
(in
rosetta.core.scoring._core_scoring_
)
info()
(in
LoopMoverGroup
)
input_streams
(in
rosetta.protocols.stepwise.sampler
)
is_score_type()
(in
ScoreTypeManager
)
info()
(in
PrepareForCentroid
)
input_stub_atom0()
(in
Atom
)
is_septanose()
(in
CarbohydrateInfo
)
info()
(in
PrepareForFullatom
)
input_stub_atom0()
(in
Atom_
)
is_seq_sep_type()
(in
HBondTypeManager
)
info()
(in
FastGapMover
)
input_stub_atom0_id()
(in
Atom
)
is_set_s_kk()
(in
DataPoint
)
info()
(in
LoopHashDiversifier
)
input_stub_atom0_id()
(in
Atom_
)
is_similar_aa()
(in
Residue
)
info()
(in
LoopHashLibrary
)
input_stub_atom1()
(in
Atom
)
is_similar_rotamer()
(in
Residue
)
info()
(in
LoopHashMoverWrapper
)
input_stub_atom1()
(in
Atom_
)
is_simple_full_length_job_params()
(in
StepWiseWorkingParameters
)
info()
(in
LoopHashRelaxProtocol
)
input_stub_atom1_id()
(in
Atom
)
is_simple_tree()
(in
FoldTree
)
info()
(in
Mover_LoopHashRefine
)
input_stub_atom1_id()
(in
Atom_
)
is_singlecomponent()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
info()
(in
FoldTreeFromLoops
)
input_stub_atom2()
(in
Atom
)
is_solution_trivial()
(in
BalancedKicMover
)
info()
(in
CCDLoopClosureMover
)
input_stub_atom2()
(in
Atom_
)
is_sp2_proton_chi()
(in
rosetta.core.chemical._core_chemical_
)
info()
(in
FASelectSlidingWindowLoopClosure
)
input_stub_atom2_id()
(in
Atom
)
is_sparis_foldtype()
(in
SheetFoldTypeManager
)
info()
(in
SlidingWindowLoopClosure
)
input_stub_atom2_id()
(in
Atom_
)
is_sri()
(in
ResidueType
)
info()
(in
WidthFirstSlidingWindowLoopClosure
)
input_stub_atom3()
(in
Atom
)
is_sri()
(in
Residue
)
info()
(in
KinematicMover
)
input_stub_atom3()
(in
Atom_
)
is_string_numeric()
(in
rosetta.utility._utility_
)
info()
(in
KinematicWrapper
)
input_stub_atom3_id()
(in
Atom
)
is_sugar_virtual()
(in
rosetta.protocols.stepwise.modeler.rna.sugar._protocols_stepwise_modeler_rna_sugar_
)
info()
(in
LoopCM
)
input_stub_atom3_id()
(in
Atom_
)
is_surface()
(in
ResidueType
)
info()
(in
LoopRefineInnerCycle
)
input_tag()
(in
InnerJob
)
is_surface()
(in
Residue
)
info()
(in
LoopRefineInnerCycleContainer
)
input_tag()
(in
Job
)
is_symmetric()
(in
rosetta.core.conformation.symmetry._core_conformation_symmetry_
)
info()
(in
RepackTrial
)
input_tag()
(in
BasicJob
)
is_symmetric()
(in
BinarySilentStruct
)
info()
(in
ShearMinCCDTrial
)
InputStreamStepWiseSampler
(in
rosetta.protocols.stepwise.sampler.input_streams._protocols_stepwise_sampler_input_streams_
)
is_symmetric()
(in
RigidBodySilentStruct
)
info()
(in
SmallMinCCDTrial
)
InputStreamStepWiseSamplerAP
(in
rosetta.protocols.stepwise.sampler.input_streams._protocols_stepwise_sampler_input_streams_
)
is_symmetric()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
info()
(in
MakeRotLibMover
)
InputStreamStepWiseSamplerCAP
(in
rosetta.protocols.stepwise.sampler.input_streams._protocols_stepwise_sampler_input_streams_
)
is_terminal()
(in
Loop
)
info()
(in
MatcherMover
)
InputStreamWithResidueInfo
(in
rosetta.protocols.stepwise.modeler.protein._protocols_stepwise_modeler_protein_
)
is_terminus()
(in
ResidueType
)
info()
(in
ExtractSubposeMover
)
InputStreamWithResidueInfoAP
(in
rosetta.protocols.stepwise.modeler.protein._protocols_stepwise_modeler_protein_
)
is_terminus()
(in
Residue
)
info()
(in
MatDesGreedyOptMutationMover
)
InputStreamWithResidueInfoCAP
(in
rosetta.protocols.stepwise.modeler.protein._protocols_stepwise_modeler_protein_
)
is_tetrose()
(in
CarbohydrateInfo
)
info()
(in
SchemePlaceMotifsMover
)
inputter
(in
rosetta.protocols
)
is_this_strand_at_edge()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
info()
(in
SymDofMover
)
Inputter
(in
rosetta.protocols.inputter._protocols_inputter_
)
is_this_strand_at_edge_by_looking_db()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
info()
(in
CartesianMD
)
InputterAP
(in
rosetta.protocols.inputter._protocols_inputter_
)
is_top()
(in
DnaChains
)
info()
(in
MDBase
)
InputterCAP
(in
rosetta.protocols.inputter._protocols_inputter_
)
is_torsion_exists()
(in
RNA_IdealCoord
)
info()
(in
MedalExchangeMover
)
InputterStream
(in
rosetta.protocols.inputter._protocols_inputter_
)
is_torsion_valid()
(in
rosetta.core.pose.rna._core_pose_rna_
)
info()
(in
MedalMover
)
InputterStreamAP
(in
rosetta.protocols.inputter._protocols_inputter_
)
is_triazolemer()
(in
ResidueType
)
info()
(in
AddMPLigandMover
)
InputterStreamCAP
(in
rosetta.protocols.inputter._protocols_inputter_
)
is_triazolemer()
(in
Residue
)
info()
(in
AddMembraneMover
)
insert
(in
StubMode
)
is_triose()
(in
CarbohydrateInfo
)
info()
(in
FlipMover
)
insert
(in
rosetta.protocols.cyclic_peptide._protocols_cyclic_peptide_
)
is_true_string()
(in
rosetta.utility._utility_
)
info()
(in
MembranePositionFromTopologyMover
)
insert
(in
rosetta.protocols.cyclic_peptide
)
is_ulose()
(in
CarbohydrateInfo
)
info()
(in
RandomPositionRotationMover
)
insert()
(in
WriteableCacheableMap
)
is_undefined()
(in
rosetta.utility._utility_
)
info()
(in
RandomPositionTranslationMover
)
insert()
(in
EdgeList
)
is_under_memory_limit()
(in
WorkUnitQueue
)
info()
(in
RotationMover
)
insert()
(in
PDBPoseMap
)
is_unit()
(in
xyzTriple_Real
)
info()
(in
SetMembraneCenterMover
)
insert()
(in
ResidueConstraints
)
is_unit()
(in
xyzTriple_SSize
)
info()
(in
SetMembraneNormalMover
)
insert()
(in
Xfrag
)
is_unit()
(in
xyzTriple_Size
)
info()
(in
SetMembranePositionMover
)
insert()
(in
DistanceHistogram
)
is_unit()
(in
xyzTriple_double
)
info()
(in
TransformIntoMembraneMover
)
insert()
(in
KDPointList
)
is_unit()
(in
xyzTriple_float
)
info()
(in
TranslationMover
)
insert()
(in
AlignmentSet
)
is_unit()
(in
xyzVector_Real
)
info()
(in
TranslationRotationMover
)
insert()
(in
BoundedCollector_T_protocols_frag_picker_CompareTotalScore_T
)
is_unit()
(in
xyzVector_SSize
)
info()
(in
SymmetricAddMembraneMover
)
insert()
(in
CandidatesCollector
)
is_unit()
(in
xyzVector_Size
)
info()
(in
VisualizeEmbeddingMover
)
insert()
(in
GrabAllCollector
)
is_unit()
(in
xyzVector_double
)
info()
(in
VisualizeMembraneMover
)
insert()
(in
ABEGO_SS_Pool
)
is_unit()
(in
xyzVector_float
)
info()
(in
ZincHeterodimerMover
)
insert()
(in
QuotaCollector
)
is_upper_cutpoint()
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
info()
(in
MotifGraftMover
)
insert()
(in
QuotaPool
)
is_upper_terminus()
(in
ResidueType
)
info()
(in
MotifDnaPacker
)
insert()
(in
SecondaryStructurePool
)
is_upper_terminus()
(in
Residue
)
info()
(in
CompositionMover
)
insert()
(in
AdaptiveScoreHistogram
)
is_upper_terminus()
(in
rosetta.core.pose._core_pose_
)
info()
(in
CycleMover
)
insert()
(in
TorsionFragment
)
is_uronic_acid()
(in
CarbohydrateInfo
)
info()
(in
CyclicMover
)
insert()
(in
OriginalBackboneBuildPoint
)
is_using()
(in
GoapRsdType
)
info()
(in
DsspMover
)
insert()
(in
ScaffoldBuildPoint
)
is_valid()
(in
Span
)
info()
(in
FilterMover
)
insert()
(in
PlacementAuctionMover
)
is_valid()
(in
SpanningTopology
)
info()
(in
FilterReporterMover
)
insert_aligned_residue()
(in
SequenceMapping
)
is_valid()
(in
FragData
)
info()
(in
IfMover
)
insert_aligned_residue_safe()
(in
SequenceMapping
)
is_valid()
(in
FragID
)
info()
(in
IteratedConvergenceMover
)
insert_atom()
(in
Atom
)
is_valid()
(in
Frame
)
info()
(in
JumpOutMover
)
insert_atom()
(in
Atom_
)
is_valid()
(in
JumpSample
)
info()
(in
MCShowMover
)
insert_cdr_into_antibody()
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
is_valid_chunk()
(in
FragmentPicker
)
info()
(in
MonteCarloUtil
)
insert_chain_ending()
(in
Conformation
)
is_valid_quota_pool_name()
(in
QuotaConfig
)
info()
(in
MoveMapMover
)
insert_chain_ending()
(in
ProtectedConformation
)
is_variant_type()
(in
ResidueProperties
)
info()
(in
Mover
)
insert_char()
(in
ChemicalShiftSequence
)
is_virtual()
(in
Atom
)
info()
(in
MoverApplyingMover
)
insert_char()
(in
CompositeSequence
)
is_virtual()
(in
AtomType
)
info()
(in
MoverContainer
)
insert_char()
(in
Sequence
)
is_virtual()
(in
ResidueType
)
info()
(in
MoverForPoseList
)
insert_char()
(in
SequenceCoupling
)
is_virtual()
(in
RNA_ResidueType
)
info()
(in
NullMover
)
insert_char()
(in
SequenceProfile
)
is_virtual()
(in
Residue
)
info()
(in
PDBDumpMover
)
insert_chunk_into_pose()
(in
ChunkSet
)
is_virtual()
(in
SymmetryInfo
)
info()
(in
ProfilerMover
)
insert_chunk_into_pose()
(in
RNA_ChunkLibrary
)
is_virtual_base()
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
info()
(in
PyMolMover
)
insert_conformation_by_jump()
(in
Conformation
)
is_virtual_residue()
(in
ResidueType
)
info()
(in
RampingMover
)
insert_conformation_by_jump()
(in
SymmetricConformation
)
is_virtual_residue()
(in
Residue
)
info()
(in
RandomMover
)
insert_conformation_by_jump()
(in
ProtectedConformation
)
is_weight_type()
(in
HBondTypeManager
)
info()
(in
RepeatMover
)
insert_cut()
(in
FoldTreeSketch
)
is_working_res()
(in
StepWiseBasicWorkingParameters
)
info()
(in
SequenceMover
)
insert_dofs_by_residue()
(in
DOFHistogramRecorder
)
is_wt_calc_complete()
(in
ddGMover
)
info()
(in
StructureRestrictor
)
insert_dssp_ss_into_pose()
(in
Dssp
)
is_zero
(in
xyzMatrix_Real
)
info()
(in
TrialMover
)
insert_edge_ss_into_pose()
(in
Dssp
)
is_zero
(in
xyzMatrix_SSize
)
info()
(in
VectorPoseMover
)
insert_fold_tree_by_jump()
(in
FoldTree
)
is_zero
(in
xyzMatrix_Size
)
info()
(in
WhileMover
)
insert_fragID_list()
(in
FragSet
)
is_zero
(in
xyzMatrix_double
)
info()
(in
StructAvrgMover
)
insert_fragment()
(in
Conformation
)
is_zero
(in
xyzMatrix_float
)
info()
(in
NcbbDockDesignProtocol
)
insert_fragment()
(in
AtomTree
)
is_zero
(in
xyzTriple_Real
)
info()
(in
OopCreatorMover
)
insert_fragment()
(in
ProtectedConformation
)
is_zero
(in
xyzTriple_SSize
)
info()
(in
OopDockDesignProtocol
)
insert_fragment()
(in
SingleResidueTorsionFragmentLibrary
)
is_zero
(in
xyzTriple_Size
)
info()
(in
CartesianNormalModeMover
)
insert_fragment()
(in
rosetta.protocols.frags._protocols_frags_
)
is_zero
(in
xyzTriple_double
)
info()
(in
NormalModeMinimizer
)
INSERT_FRAGS
(in
rosetta.basic
)
is_zero
(in
xyzTriple_float
)
info()
(in
NormalModeRelaxMover
)
INSERT_FRAGS
(in
rosetta.basic._basic_
)
is_zero
(in
xyzVector_Real
)
info()
(in
TorsionNormalModeMover
)
INSERT_FRAGS
(in
ProfTag
)
is_zero
(in
xyzVector_SSize
)
info()
(in
SetupPoissonBoltzmannPotential
)
insert_gap()
(in
Sequence
)
is_zero
(in
xyzVector_Size
)
info()
(in
AddChainBreak
)
insert_hbond_dehydron_row()
(in
HBondFeatures
)
is_zero
(in
xyzVector_double
)
info()
(in
AddSidechainConstraintsToHotspots
)
insert_hbond_geom_coords()
(in
HBondFeatures
)
is_zero
(in
xyzVector_float
)
info()
(in
BackrubDDMover
)
insert_hbond_lennard_jones_row()
(in
HBondFeatures
)
is_zero()
(in
xyzMatrix_T_float_T
)
info()
(in
BestHotspotCstMover
)
insert_hbond_row()
(in
HBondFeatures
)
isAcceptor()
(in
PDB
)
info()
(in
BuildAlaPose
)
insert_hit()
(in
HitHasher
)
IsAromaticBond
(in
rosetta
)
info()
(in
DesignMinimizeHbonds
)
insert_hit_geometry()
(in
OccupiedSpaceHash
)
IsAromaticBond
(in
rosetta.core.chemical
)
info()
(in
DisulfideMover
)
insert_ideal_bonds_at_polymer_junction()
(in
rosetta.core.conformation._core_conformation_
)
IsAromaticBond
(in
BondAromaticity
)
info()
(in
DockAndRetrieveSidechains
)
insert_ideal_geometry_at_polymer_bond()
(in
Conformation
)
IsAromaticBond
(in
rosetta.core.chemical._core_chemical_
)
info()
(in
DockWithHotspotMover
)
insert_ideal_geometry_at_polymer_bond()
(in
ProtectedConformation
)
isbb()
(in
ElecAtom
)
info()
(in
FavorNativeResiduePreCycle
)
insert_ideal_geometry_at_residue_connection()
(in
Conformation
)
IsBondedToAHalogen()
(in
PossibleAtomTypesForAtom
)
info()
(in
FavorNonNativeResiduePreCycle
)
insert_ideal_geometry_at_residue_connection()
(in
ProtectedConformation
)
IsBondInRing()
(in
Bond
)
info()
(in
HotspotDisjointedFoldTreeMover
)
insert_ideal_mainchain_bonds()
(in
rosetta.core.conformation._core_conformation_
)
IsBondOrderKnown()
(in
Bond
)
info()
(in
HotspotHasherMover
)
insert_jump()
(in
FoldTreeSketch
)
isClose()
(in
CCluster
)
info()
(in
InterfaceRecapitulationMover
)
insert_loop_at_index()
(in
LoopsFileData
)
isClose()
(in
PCluster
)
info()
(in
LoopFinder
)
insert_map()
(in
FragmentMover
)
isCompound()
(in
RBSegment
)
info()
(in
LoopLengthChange
)
insert_match_into_pose()
(in
PoseMatchOutputWriter
)
isDigit()
(in
rosetta.protocols.sparta._protocols_sparta_
)
info()
(in
LoopMoverFromCommandLine
)
insert_or_ignore()
(in
rosetta.basic.database._basic_database_
)
isDirExists()
(in
rosetta.protocols.sparta._protocols_sparta_
)
info()
(in
LoopOver
)
insert_pair()
(in
RestrictInterGroupVectorOperation
)
isDonor()
(in
PDB
)
info()
(in
LoopRemodel
)
insert_point()
(in
RocCurve
)
ISECT
(in
rosetta.core.scoring.packstat
)
info()
(in
MapHotspot
)
insert_polymer_residue()
(in
FoldTree
)
ISECT
(in
EventType
)
info()
(in
PatchdockTransform
)
insert_pose_into_pose()
(in
rosetta.protocols.grafting._protocols_grafting_
)
ISECT
(in
rosetta.core.scoring.packstat._core_scoring_packstat_
)
info()
(in
PeptideStapleDesignMover
)
insert_position()
(in
EnergyEval
)
isEmpty()
(in
RBSegment
)
info()
(in
PlaceOnLoop
)
insert_random_fragments_in_flexible_protein_regions()
(in
rosetta.protocols.frags._protocols_frags_
)
isFiberDataLoaded()
(in
FiberDiffraction
)
info()
(in
PlaceSimultaneouslyMover
)
insert_residue_by_bond()
(in
Conformation
)
isGenericRB()
(in
RBSegment
)
info()
(in
PlaceStubMover
)
insert_residue_by_bond()
(in
Pose
)
isHelix()
(in
RBSegment
)
info()
(in
PlacementAuctionMover
)
insert_residue_by_chemical_bond()
(in
FoldTree
)
isMapLoaded()
(in
ElectronDensity
)
info()
(in
PlacementMinimizationMover
)
insert_residue_by_jump()
(in
Conformation
)
isMapLoaded()
(in
ElectronDensityAtomwise
)
info()
(in
PrepackMover
)
insert_residue_by_jump()
(in
FoldTree
)
isometry()
(in
Bond
)
info()
(in
ProteinInterfaceMultiStateDesignMover
)
insert_residue_by_jump()
(in
Pose
)
isPowerOfTwo()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
info()
(in
RandomMutation
)
insert_residue_into_atom_tree()
(in
rosetta.core.conformation._core_conformation_
)
IsProteinCAPredicate
(in
rosetta.core.scoring._core_scoring_
)
info()
(in
RepackMinimize
)
insert_residue_rows()
(in
ResidueFeatures
)
IsProteinCAPredicateAP
(in
rosetta.core.scoring._core_scoring_
)
info()
(in
SaveAndRetrieveSidechains
)
insert_rms()
(in
ScoreMover
)
IsProteinCAPredicateCAP
(in
rosetta.core.scoring._core_scoring_
)
info()
(in
SetAtomTree
)
insert_sampled_torsion_string_into_taboo_map()
(in
KinematicMover
)
isSheet()
(in
RBSegment
)
info()
(in
SetTemperatureFactor
)
insert_score_function_method_options_rows()
(in
EnergyMethodOptions
)
isSimple()
(in
RBSegment
)
info()
(in
SetupHotspotConstraintsLoopsMover
)
insert_score_function_weights_rows()
(in
ScoreFunctionFeatures
)
isSolventExposed()
(in
CCluster
)
info()
(in
SetupHotspotConstraintsMover
)
insert_site_atoms_row()
(in
HBondFeatures
)
isSolventExposed()
(in
PCluster
)
info()
(in
ShoveResidueMover
)
insert_site_environment_row()
(in
HBondFeatures
)
isSpace()
(in
rosetta.protocols.sparta._protocols_sparta_
)
info()
(in
SpinMover
)
insert_site_pdb_row()
(in
HBondFeatures
)
isSSBonded()
(in
PDB
)
info()
(in
SubroutineMover
)
insert_site_row()
(in
HBondFeatures
)
isTarget()
(in
CCluster
)
info()
(in
TaskAwareCsts
)
insert_size()
(in
FragmentMover
)
isTarget()
(in
PCluster
)
info()
(in
TopologyBrokerMover
)
insert_source_residue()
(in
SequenceMapping
)
isTooSmall()
(in
PocketGrid
)
info()
(in
TryRotamers
)
insert_ss_into_pose()
(in
Dssp
)
istream
(in
rosetta.utility._utility_
)
info()
(in
VLB
)
insert_ss_into_pose()
(in
BluePrint
)
IsUnsaturated()
(in
PossibleAtomTypesForAtom
)
info()
(in
AutoRBMover
)
insert_ss_into_pose_no_IG_helix()
(in
Dssp
)
isVarFloat()
(in
GDB
)
info()
(in
FragInsertAndAlignMover
)
insert_statement_generator
(in
rosetta.basic.database
)
isVarInt()
(in
GDB
)
info()
(in
GaussianRBSegmentMover
)
insert_structure_score_rows()
(in
StructureScoresFeatures
)
isVarString()
(in
GDB
)
info()
(in
HelicalGaussianMover
)
insert_target_residue()
(in
SequenceMapping
)
ITEExpression
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
info()
(in
IdealizeHelicesMover
)
insert_task_operation_residue_effects_row()
(in
TaskOperationFeatures
)
ITEExpressionAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
info()
(in
MakeStarTopologyMover
)
insert_task_operations_row()
(in
TaskOperationFeatures
)
ITEExpressionCAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
info()
(in
OptimizeThreadingMover
)
InsertChunkMover
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
items()
(in
map_Real_Real
)
info()
(in
RBSegmentMover
)
InsertChunkMoverAP
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
items()
(in
map_Real_string
)
info()
(in
RBSegmentRelax
)
InsertChunkMoverCAP
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
items()
(in
map_SSize_SSize
)
info()
(in
SequenceShiftMover
)
InsertGenerator
(in
rosetta.basic.database.insert_statement_generator._basic_database_insert_statement_generator_
)
items()
(in
map_SSize_string
)
info()
(in
StrandTwistingMover
)
InsertGeneratorAP
(in
rosetta.basic.database.insert_statement_generator._basic_database_insert_statement_generator_
)
items()
(in
map_Size_Real
)
info()
(in
AtomCoordinateCstMover
)
InsertGeneratorCAP
(in
rosetta.basic.database.insert_statement_generator._basic_database_insert_statement_generator_
)
items()
(in
map_Size_Size
)
info()
(in
CentroidRelax
)
insertion()
(in
BluePrint
)
items()
(in
map_Size_SymDof
)
info()
(in
ClassicRelax
)
insertion_code()
(in
PDBLandmark
)
items()
(in
map_Size_string
)
info()
(in
FastRelax
)
insertion_code()
(in
ResidueIndexDescription
)
items()
(in
map_char_pair_Size_Size
)
info()
(in
LocalRelax
)
insertion_length()
(in
GraftMoverBase
)
items()
(in
map_int_int
)
info()
(in
MiniRelax
)
InsertPoseIntoPoseMover
(in
rosetta.protocols.grafting.simple_movers._protocols_grafting_simple_movers_
)
items()
(in
map_int_string
)
info()
(in
RelaxProtocolBase
)
InsertPoseIntoPoseMoverAP
(in
rosetta.protocols.grafting.simple_movers._protocols_grafting_simple_movers_
)
items()
(in
map_string_Real
)
info()
(in
MPFastRelaxMover
)
InsertPoseIntoPoseMoverCAP
(in
rosetta.protocols.grafting.simple_movers._protocols_grafting_simple_movers_
)
items()
(in
map_string_SSize
)
info()
(in
MembraneCenterPerturbationMover
)
InsertPoseIntoPoseMoverCreator
(in
rosetta.protocols.grafting.simple_movers._protocols_grafting_simple_movers_
)
items()
(in
map_string_Size
)
info()
(in
MembraneNormalPerturbationMover
)
InsertPoseIntoPoseMoverCreatorAP
(in
rosetta.protocols.grafting.simple_movers._protocols_grafting_simple_movers_
)
items()
(in
map_string_int
)
info()
(in
MovePoseToMembraneCenterMover
)
InsertPoseIntoPoseMoverCreatorCAP
(in
rosetta.protocols.grafting.simple_movers._protocols_grafting_simple_movers_
)
items()
(in
map_string_string
)
info()
(in
RigidBodyDeterministicSpinMover
)
InSetExpression
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
iter()
(in
Scheduler
)
info()
(in
RigidBodyDofPerturbMover
)
InSetExpressionAP
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
iter_begin()
(in
PseudoBondCollection
)
info()
(in
RigidBodyDofRandomTransMover
)
InSetExpressionCAP
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
iter_end()
(in
PseudoBondCollection
)
info()
(in
RigidBodyDofRandomizeMover
)
Instance()
(in
CalculatorFactory
)
iterate()
(in
ContactCounts
)
info()
(in
RigidBodyDofSeqPerturbMover
)
instance()
(in
RmsData
)
iterate_bump_selector()
(in
BumpSelector
)
info()
(in
RigidBodyDofSeqRandomizeMover
)
instance()
(in
Timer
)
iterate_neighbor()
(in
ContactCounts
)
info()
(in
RigidBodyDofSeqTransMover
)
instantiate_any_virtual_sugars()
(in
rosetta.protocols.stepwise.modeler.rna.sugar._protocols_stepwise_modeler_rna_sugar_
)
iterate_tensor_weights()
(in
ResidualDipolarCoupling
)
info()
(in
RigidBodyDofTransMover
)
instantiate_filter()
(in
RosettaScriptsParser
)
IteratedConvergenceMover
(in
rosetta.protocols.moves._protocols_moves_
)
info()
(in
RigidBodyMotionMover
)
instantiate_mover()
(in
RosettaScriptsParser
)
IteratedConvergenceMoverAP
(in
rosetta.protocols.moves._protocols_moves_
)
info()
(in
RigidBodyMover
)
instantiate_sugars_at_cutpoint_closed()
(in
VirtualSugarJustInTimeInstantiator
)
IteratedConvergenceMoverCAP
(in
rosetta.protocols.moves._protocols_moves_
)
info()
(in
RigidBodyPerturbMover
)
instantiate_taskoperation()
(in
RosettaScriptsParser
)
IteratedConvergenceMoverCreator
(in
rosetta.protocols.moves._protocols_moves_
)
info()
(in
RigidBodyPerturbNoCenterMover
)
instantiated_phosphate()
(in
PhosphateMover
)
IteratedConvergenceMoverCreatorAP
(in
rosetta.protocols.moves._protocols_moves_
)
info()
(in
RigidBodyPerturbRandomJumpMover
)
instantiated_some_phosphate()
(in
MultiPhosphateSampler
)
IteratedConvergenceMoverCreatorCAP
(in
rosetta.protocols.moves._protocols_moves_
)
info()
(in
RigidBodyRandomizeMover
)
instruction_size()
(in
BluePrintBDR
)
iteration()
(in
VIP_Mover
)
info()
(in
RigidBodySpinMover
)
int2afteroption()
(in
rosetta.basic.options._basic_options_
)
iterations()
(in
GeneralizedKICperturber
)
info()
(in
RigidBodyTransMover
)
intafteroption()
(in
rosetta.basic.options._basic_options_
)
IterationStage
(in
IterativeBase
)
info()
(in
RollMover
)
integer_msg()
(in
SimulateMPIMessage
)
IterativeAbrelax
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
info()
(in
RotateJumpAxisMover
)
integers_msg()
(in
SimulateMPIMessage
)
IterativeAbrelaxAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
info()
(in
UniformRigidBodyCM
)
INTEGRATION_TEST
(in
rosetta.protocols.stepwise.screener
)
IterativeAbrelaxCAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
info()
(in
UniformRigidBodyMover
)
INTEGRATION_TEST
(in
rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
)
IterativeBase
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
info()
(in
UniformSphereTransMover
)
INTEGRATION_TEST
(in
StepWiseScreenerType
)
IterativeBaseAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
info()
(in
WholeBodyRotationMover
)
integration_test_mode()
(in
StepWiseRNA_ModelerOptions
)
IterativeBaseCAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
info()
(in
WholeBodyTranslationMover
)
integration_test_mode()
(in
StepWiseMonteCarloOptions
)
IterativeCentroid
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
info()
(in
AdditionalOutputWrapper
)
IntegrationTestBreaker
(in
rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
)
IterativeCentroidAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
info()
(in
MultipleOutputWrapper
)
IntegrationTestBreakerAP
(in
rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
)
IterativeCentroidCAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
info()
(in
MultiplePoseMover
)
IntegrationTestBreakerCAP
(in
rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
)
IterativeFullatom
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
info()
(in
ParsedProtocol
)
inter_chain()
(in
AddConstraintsToCurrentConformationMover
)
IterativeFullatomAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
info()
(in
SavePoseMover
)
inter_clash1()
(in
ResPairMotifQuery
)
IterativeFullatomCAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
info()
(in
RotamerRecoveryMover
)
inter_clash1_xform()
(in
ResPairMotifQuery
)
IterativeOptEDriver
(in
rosetta.protocols.optimize_weights._protocols_optimize_weights_
)
info()
(in
CAcstGenerator
)
inter_clash2()
(in
ResPairMotifQuery
)
IterativeOptEDriverAP
(in
rosetta.protocols.optimize_weights._protocols_optimize_weights_
)
info()
(in
CloseFold
)
inter_clash2_xform()
(in
ResPairMotifQuery
)
IterativeOptEDriverCAP
(in
rosetta.protocols.optimize_weights._protocols_optimize_weights_
)
info()
(in
CoordinateCst
)
inter_residue_connection_partner()
(in
Conformation
)
IterativeVectorExpression
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
info()
(in
DefineMovableLoops
)
InteractingRotamerExplosion
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
IterativeVectorExpressionAP
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
info()
(in
GrowPeptides
)
InteractingRotamerExplosionAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
IterativeVectorExpressionCAP
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
info()
(in
SeedFoldTree
)
InteractingRotamerExplosionCAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
IVa
(in
rosetta.protocols.abinitio.abscript
)
info()
(in
SeedSetupMover
)
InteractingRotamerExplosionCreator
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
IVa
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
info()
(in
SegmentHybridizer
)
InteractingRotamerExplosionCreatorAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
IVa
(in
StageID
)
info()
(in
SwapSegment
)
InteractingRotamerExplosionCreatorCAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
IVb
(in
rosetta.protocols.abinitio.abscript
)
info()
(in
EvaluatedTrialMover
)
interaction_cutoff()
(in
CustomAtomPairEnergy
)
IVb
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
info()
(in
AddCavitiesMover
)
interaction_cutoff()
(in
GaussianOverlapEnergy
)
IVb
(in
StageID
)
info()
(in
AddChainMover
)
interaction_cutoff()
(in
PairEnergy
)
ivm()
(in
InteratomicVarianceMatrix
)
info()
(in
AddConstraintsToCurrentConformationMover
)
interaction_cutoff()
(in
SuckerEnergy
)
info()
(in
AddJobPairData
)
interaction_graph
(in
rosetta.core.pack
)
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