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F
F()
(in
BicubicSpline
)
final_pose()
(in
AtomTreeDiffJobOutputter
)
FragmentPairAP
(in
rosetta.protocols.features.helixAssembly._protocols_features_helixAssembly_
)
F()
(in
CubicSpline
)
final_pose()
(in
FileJobOutputter
)
FragmentPairCAP
(in
rosetta.protocols.features.helixAssembly._protocols_features_helixAssembly_
)
F()
(in
PolycubicSpline
)
final_pose()
(in
JobOutputter
)
FragmentPerturber
(in
rosetta.protocols.kinematic_closure.perturbers._protocols_kinematic_closure_perturbers_
)
F()
(in
TricubicSpline
)
final_pose()
(in
NoOutputJobOutputter
)
FragmentPerturberAP
(in
rosetta.protocols.kinematic_closure.perturbers._protocols_kinematic_closure_perturbers_
)
f0()
(in
KromerMann
)
final_pose()
(in
PDBJobOutputter
)
FragmentPerturberCAP
(in
rosetta.protocols.kinematic_closure.perturbers._protocols_kinematic_closure_perturbers_
)
f0()
(in
KromerMann
)
final_pose()
(in
ScoreOnlyJobOutputter
)
FragmentPicker
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
)
f00()
(in
DOF_DataPoint
)
final_pose()
(in
SilentFileJobOutputter
)
FragmentPickerAP
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
)
f00()
(in
DerivCheckDataPoint
)
final_repack()
(in
AnchoredGraftMover
)
FragmentPickerCAP
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
)
F1()
(in
DOF_Node
)
final_score()
(in
ParsedProtocol
)
FRAGMENTPICKING
(in
rosetta.basic
)
f1()
(in
DerivVectorPair
)
final_scorefxn()
(in
ParsedProtocol
)
FRAGMENTPICKING
(in
rosetta.basic._basic_
)
f11()
(in
DOF_DataPoint
)
final_stream()
(in
Tracer
)
FRAGMENTPICKING
(in
ProfTag
)
f11()
(in
DerivCheckDataPoint
)
final_test()
(in
MotifHit
)
FRAGMENTPICKING_ATOMPAIR_SCORE
(in
rosetta.basic
)
f1ij()
(in
CSA
)
final_visit_to_edge()
(in
SymmetricRotamerSets
)
FRAGMENTPICKING_ATOMPAIR_SCORE
(in
rosetta.basic._basic_
)
f1ij()
(in
DC
)
FINALIZE
(in
rosetta.basic
)
FRAGMENTPICKING_ATOMPAIR_SCORE
(in
ProfTag
)
F2()
(in
DOF_Node
)
FINALIZE
(in
rosetta.basic._basic_
)
FRAGMENTPICKING_CANDIDATES_COLLECTING
(in
rosetta.basic
)
f2()
(in
DerivVectorPair
)
FINALIZE
(in
ProfTag
)
FRAGMENTPICKING_CANDIDATES_COLLECTING
(in
rosetta.basic._basic_
)
f22()
(in
DOF_DataPoint
)
finalize()
(in
ResidueType
)
FRAGMENTPICKING_CANDIDATES_COLLECTING
(in
ProfTag
)
f22()
(in
DerivCheckDataPoint
)
Finalize()
(in
PossibleAtomTypesForAtom
)
FRAGMENTPICKING_CS_SCORE
(in
rosetta.basic
)
f2ij()
(in
CSA
)
finalize()
(in
AtomID_Map_T_bool_T
)
FRAGMENTPICKING_CS_SCORE
(in
rosetta.basic._basic_
)
f2ij()
(in
DC
)
finalize()
(in
AtomID_Map_T_core_id_AtomID_T
)
FRAGMENTPICKING_CS_SCORE
(in
ProfTag
)
f3ij()
(in
CSA
)
finalize()
(in
AtomID_Map_T_double_T
)
FRAGMENTPICKING_DIHEDRALCONSTR_SCORE
(in
rosetta.basic
)
fa_atr
(in
ScoreType
)
finalize()
(in
AtomID_Map_T_numeric_xyzVector_T_double_T__T
)
FRAGMENTPICKING_DIHEDRALCONSTR_SCORE
(in
rosetta.basic._basic_
)
fa_atr
(in
rosetta.core.scoring._core_scoring_
)
finalize()
(in
NamedAtomID_Map_T_core_id_NamedAtomID_T
)
FRAGMENTPICKING_DIHEDRALCONSTR_SCORE
(in
ProfTag
)
fa_atr
(in
rosetta.core.scoring
)
finalize()
(in
CenRotEnvPairPotential
)
FRAGMENTPICKING_PHIPSI_SCORE
(in
rosetta.basic
)
fa_atr
(in
rosetta
)
finalize()
(in
EnvPairPotential
)
FRAGMENTPICKING_PHIPSI_SCORE
(in
rosetta.basic._basic_
)
fa_atr()
(in
ResPairMotif
)
finalize()
(in
MembranePotential
)
FRAGMENTPICKING_PHIPSI_SCORE
(in
ProfTag
)
fa_atr_bb()
(in
ResPairMotif
)
finalize()
(in
Membrane_FAPotential
)
FRAGMENTPICKING_PROFILE_CAHING
(in
rosetta.basic
)
fa_atr_dummy
(in
ScoreType
)
finalize()
(in
SmoothEnvPairPotential
)
FRAGMENTPICKING_PROFILE_CAHING
(in
rosetta.basic._basic_
)
fa_atr_dummy
(in
rosetta.core.scoring._core_scoring_
)
finalize()
(in
BinTransitionData
)
FRAGMENTPICKING_PROFILE_CAHING
(in
ProfTag
)
fa_atr_dummy
(in
rosetta.core.scoring
)
finalize()
(in
MembraneData
)
FRAGMENTPICKING_PROFILE_SCORE
(in
rosetta.basic
)
fa_atr_dummy
(in
rosetta
)
finalize()
(in
RNA_LowResolutionPotential
)
FRAGMENTPICKING_PROFILE_SCORE
(in
rosetta.basic._basic_
)
fa_atr_sc_bb()
(in
ResPairMotif
)
finalize()
(in
Pool_RMSD
)
FRAGMENTPICKING_PROFILE_SCORE
(in
ProfTag
)
fa_center()
(in
Membrane_FAEmbed
)
finalize()
(in
DimerPairings
)
FRAGMENTPICKING_READ_VALL
(in
rosetta.basic
)
fa_cust_pair_dist
(in
ScoreType
)
finalize()
(in
StrandPairingSet
)
FRAGMENTPICKING_READ_VALL
(in
rosetta.basic._basic_
)
fa_cust_pair_dist
(in
rosetta.core.scoring._core_scoring_
)
finalize()
(in
InterchainPotential
)
FRAGMENTPICKING_READ_VALL
(in
ProfTag
)
fa_cust_pair_dist
(in
rosetta.core.scoring
)
finalize()
(in
DbTrajectoryWriter
)
FRAGMENTPICKING_SECONDARY_SCORE
(in
rosetta.basic
)
fa_cust_pair_dist
(in
rosetta
)
finalize_after_derivatives()
(in
DunbrackEnergy
)
FRAGMENTPICKING_SECONDARY_SCORE
(in
rosetta.basic._basic_
)
fa_custom_pair_dist_data
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
CenRotDunEnergy
)
FRAGMENTPICKING_SECONDARY_SCORE
(in
ProfTag
)
fa_custom_pair_dist_data
(in
min_pair_data
)
finalize_after_derivatives()
(in
HPatchEnergy
)
FragmentReader
(in
rosetta.protocols.jd2.parser._protocols_jd2_parser_
)
fa_custom_pair_dist_data
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
SurfaceEnergy
)
FragmentReaderAP
(in
rosetta.protocols.jd2.parser._protocols_jd2_parser_
)
fa_custom_pair_dist_data
(in
rosetta
)
finalize_after_derivatives()
(in
DockingScoreFunction
)
FragmentReaderCAP
(in
rosetta.protocols.jd2.parser._protocols_jd2_parser_
)
fa_depth()
(in
Membrane_FAEmbed
)
finalize_after_derivatives()
(in
MinScoreScoreFunction
)
FragmentRmsd
(in
rosetta.core.fragment._core_fragment_
)
fa_disulfide_energy
(in
LongRangeEnergyType
)
finalize_after_derivatives()
(in
ScoreFunction
)
FragmentRmsdAP
(in
rosetta.core.fragment._core_fragment_
)
fa_disulfide_energy
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
finalize_after_derivatives()
(in
CarbonHBondEnergy
)
FragmentRmsdCAP
(in
rosetta.core.fragment._core_fragment_
)
fa_disulfide_energy
(in
rosetta.core.scoring.methods
)
finalize_after_derivatives()
(in
ConstraintsEnergy
)
fragments()
(in
VallLibrarian
)
fa_dslf_respair_data
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
XtalMLEnergy
)
fragments()
(in
SlidingWindowLoopClosure
)
fa_dslf_respair_data
(in
min_pair_data
)
finalize_after_derivatives()
(in
FullatomCustomPairDistanceEnergy
)
fragments()
(in
FragmentMover
)
fa_dslf_respair_data
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
CentroidDisulfideEnergy
)
fragments_permutation_test_by_CA_distances()
(in
MotifGraftMover
)
fa_dslf_respair_data
(in
rosetta
)
finalize_after_derivatives()
(in
DisulfideMatchingEnergy
)
FragmentSampler
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
fa_dun
(in
ScoreType
)
finalize_after_derivatives()
(in
FullatomDisulfideEnergy
)
FragmentSamplerAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
fa_dun
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
DNAChiEnergy
)
FragmentSamplerCAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
fa_dun
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
DNATorsionEnergy
)
FragmentScoreManager
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
fa_dun
(in
rosetta
)
finalize_after_derivatives()
(in
FA_ElecEnergy
)
FragmentScoreManagerAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
fa_dun_cutoff()
(in
BuildSet
)
finalize_after_derivatives()
(in
FA_ElecEnergyAroAll
)
FragmentScoreManagerCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
fa_dun_dev
(in
ScoreType
)
finalize_after_derivatives()
(in
FA_ElecEnergyAroAro
)
FragmentScoreMap
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
fa_dun_dev
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
FA_GrpElecEnergy
)
FragmentScoreMapAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
fa_dun_dev
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
RNA_FA_ElecEnergy
)
FragmentScoreMapCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
fa_dun_dev
(in
rosetta
)
finalize_after_derivatives()
(in
ElecDensAllAtomCenEnergy
)
FragmentScoringMethod
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
fa_dun_dev()
(in
RotamerLibraryScratchSpace
)
finalize_after_derivatives()
(in
ElecDensCenEnergy
)
FragmentScoringMethodAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
fa_dun_rot
(in
ScoreType
)
finalize_after_derivatives()
(in
ElecDensEnergy
)
FragmentScoringMethodCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
fa_dun_rot
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
FastDensEnergy
)
FragmentSelectingRule
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
)
fa_dun_rot
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
PattersonCorrEnergy
)
FragmentSelectingRuleAP
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
)
fa_dun_rot
(in
rosetta
)
finalize_after_derivatives()
(in
ElecDensAtomwiseEnergy
)
FragmentSelectingRuleCAP
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
)
fa_dun_rot()
(in
RotamerLibraryScratchSpace
)
finalize_after_derivatives()
(in
AnalyticEtableEnergy
)
FragmentSpecification
(in
rosetta.core.indexed_structure_store._core_indexed_structure_store_
)
fa_dun_semi
(in
ScoreType
)
finalize_after_derivatives()
(in
BaseEtableEnergy_T_core_scoring_etable_AnalyticEtableEnergy_T
)
FragmentSpecificationAP
(in
rosetta.core.indexed_structure_store._core_indexed_structure_store_
)
fa_dun_semi
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
BaseEtableEnergy_T_core_scoring_etable_TableLookupEtableEnergy_T
)
FragmentSpecificationCAP
(in
rosetta.core.indexed_structure_store._core_indexed_structure_store_
)
fa_dun_semi
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
TableLookupEtableEnergy
)
FragmentStore
(in
rosetta.core.indexed_structure_store._core_indexed_structure_store_
)
fa_dun_semi
(in
rosetta
)
finalize_after_derivatives()
(in
FiberDiffractionEnergy
)
FragmentStoreAP
(in
rosetta.core.indexed_structure_store._core_indexed_structure_store_
)
fa_dun_semi()
(in
RotamerLibraryScratchSpace
)
finalize_after_derivatives()
(in
FiberDiffractionEnergyDens
)
FragmentStoreCAP
(in
rosetta.core.indexed_structure_store._core_indexed_structure_store_
)
fa_dun_tot()
(in
RotamerLibraryScratchSpace
)
finalize_after_derivatives()
(in
ContextDependentGeometricSolEnergy
)
FragQualCalculator
(in
rosetta.protocols.toolbox.pose_metric_calculators._protocols_toolbox_pose_metric_calculators_
)
fa_elec
(in
ScoreType
)
finalize_after_derivatives()
(in
ContextIndependentGeometricSolEnergy
)
FragQualCalculatorAP
(in
rosetta.protocols.toolbox.pose_metric_calculators._protocols_toolbox_pose_metric_calculators_
)
fa_elec
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
ExactOccludedHbondSolEnergy
)
FragQualCalculatorCAP
(in
rosetta.protocols.toolbox.pose_metric_calculators._protocols_toolbox_pose_metric_calculators_
)
fa_elec
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
OccludedHbondSolEnergy
)
FragQualFilter
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
fa_elec
(in
rosetta
)
finalize_after_derivatives()
(in
OccludedHbondSolEnergy_onebody
)
FragQualFilterAP
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
fa_elec_aro_all
(in
ScoreType
)
finalize_after_derivatives()
(in
HackAroEnergy
)
FragQualFilterCAP
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
fa_elec_aro_all
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
HBondEnergy
)
FragQualFilterCreator
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
fa_elec_aro_all
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
DDPscore
)
FragQualFilterCreatorAP
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
fa_elec_aro_all
(in
rosetta
)
finalize_after_derivatives()
(in
LoopCloseEnergy
)
FragQualFilterCreatorCAP
(in
rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
)
fa_elec_aro_aro
(in
ScoreType
)
finalize_after_derivatives()
(in
FaMPEnvEnergy
)
frags
(in
rosetta.protocols
)
fa_elec_aro_aro
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
FaMPEnvSmoothEnergy
)
frags_per_pos()
(in
FragmentSelectingRule
)
fa_elec_aro_aro
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
FaMPSolvEnergy
)
FragSet
(in
rosetta.core.fragment._core_fragment_
)
fa_elec_aro_aro
(in
rosetta
)
finalize_after_derivatives()
(in
MPCbetaEnergy
)
FragSetAP
(in
rosetta.core.fragment._core_fragment_
)
fa_elec_bb_bb
(in
ScoreType
)
finalize_after_derivatives()
(in
MPEnvEnergy
)
FragSetCAP
(in
rosetta.core.fragment._core_fragment_
)
fa_elec_bb_bb
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
MPLipoEnergy
)
FragSetCollection
(in
rosetta.core.fragment._core_fragment_
)
fa_elec_bb_bb
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
MPNonHelixPenalty
)
FragSetCollectionAP
(in
rosetta.core.fragment._core_fragment_
)
fa_elec_bb_bb
(in
rosetta
)
finalize_after_derivatives()
(in
MPPairEnergy
)
FragSetCollectionCAP
(in
rosetta.core.fragment._core_fragment_
)
fa_elec_bb_sc
(in
ScoreType
)
finalize_after_derivatives()
(in
MPTMProjPenalty
)
FragSetLoader
(in
rosetta.protocols.jd2.parser._protocols_jd2_parser_
)
fa_elec_bb_sc
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
MPTerminiPenalty
)
FragSetLoaderAP
(in
rosetta.protocols.jd2.parser._protocols_jd2_parser_
)
fa_elec_bb_sc
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
BurialEnergy
)
FragSetLoaderCAP
(in
rosetta.protocols.jd2.parser._protocols_jd2_parser_
)
fa_elec_bb_sc
(in
rosetta
)
finalize_after_derivatives()
(in
CartesianBondedEnergy
)
FragSetLoaderCreator
(in
rosetta.protocols.jd2.parser._protocols_jd2_parser_
)
fa_elec_rna_base_base
(in
ScoreType
)
finalize_after_derivatives()
(in
CenHBEnergy
)
FragSetLoaderCreatorAP
(in
rosetta.protocols.jd2.parser._protocols_jd2_parser_
)
fa_elec_rna_base_base
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
CenPairEnergy
)
FragSetLoaderCreatorCAP
(in
rosetta.protocols.jd2.parser._protocols_jd2_parser_
)
fa_elec_rna_base_base
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
CenRotEnvEnergy
)
Frame
(in
rosetta.core.fragment._core_fragment_
)
fa_elec_rna_base_base
(in
rosetta
)
finalize_after_derivatives()
(in
CenRotPairEnergy
)
frame()
(in
FragFactory
)
fa_elec_rna_base_base_fast
(in
ScoreType
)
finalize_after_derivatives()
(in
ChainbreakEnergy
)
frame()
(in
FragID
)
fa_elec_rna_base_base_fast
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
ChemicalShiftAnisotropyEnergy
)
frame()
(in
ClosureProblem
)
fa_elec_rna_base_base_fast
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
ContactOrderEnergy
)
frame()
(in
FullChiSampleSet
)
fa_elec_rna_base_base_fast
(in
rosetta
)
finalize_after_derivatives()
(in
ContextDependentLRTwoBodyEnergy
)
frame_from_global_orientation()
(in
LigandConformer
)
fa_elec_rna_phos_base
(in
ScoreType
)
finalize_after_derivatives()
(in
ContextDependentOneBodyEnergy
)
frame_ptr()
(in
ConstFrameIterator
)
fa_elec_rna_phos_base
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
ContextDependentTwoBodyEnergy
)
frame_ptr()
(in
FragID
)
fa_elec_rna_phos_base
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
ContextIndependentLRTwoBodyEnergy
)
frame_ptr()
(in
FrameIterator
)
fa_elec_rna_phos_base
(in
rosetta
)
finalize_after_derivatives()
(in
ContextIndependentOneBodyEnergy
)
frame_vector()
(in
FrameList
)
fa_elec_rna_phos_base_fast
(in
ScoreType
)
finalize_after_derivatives()
(in
ContextIndependentTwoBodyEnergy
)
FrameAP
(in
rosetta.core.fragment._core_fragment_
)
fa_elec_rna_phos_base_fast
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
CustomAtomPairEnergy
)
FrameCAP
(in
rosetta.core.fragment._core_fragment_
)
fa_elec_rna_phos_base_fast
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
D2H_SA_Energy
)
FrameIterator
(in
rosetta.core.fragment._core_fragment_
)
fa_elec_rna_phos_base_fast
(in
rosetta
)
finalize_after_derivatives()
(in
DNA_BaseEnergy
)
FrameIteratorAP
(in
rosetta.core.fragment._core_fragment_
)
fa_elec_rna_phos_phos
(in
ScoreType
)
finalize_after_derivatives()
(in
DipolarCouplingEnergy
)
FrameIteratorCAP
(in
rosetta.core.fragment._core_fragment_
)
fa_elec_rna_phos_phos
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
DirectReadoutEnergy
)
FrameIteratorWorker_
(in
rosetta.core.fragment._core_fragment_
)
fa_elec_rna_phos_phos
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
DistanceChainbreakEnergy
)
FrameIteratorWorker_AP
(in
rosetta.core.fragment._core_fragment_
)
fa_elec_rna_phos_phos
(in
rosetta
)
finalize_after_derivatives()
(in
EnergyMethod
)
FrameIteratorWorker_CAP
(in
rosetta.core.fragment._core_fragment_
)
fa_elec_rna_phos_phos_fast
(in
ScoreType
)
finalize_after_derivatives()
(in
EnvEnergy
)
FrameList
(in
rosetta.core.fragment._core_fragment_
)
fa_elec_rna_phos_phos_fast
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
EnvSmoothEnergy
)
FrameListAP
(in
rosetta.core.fragment._core_fragment_
)
fa_elec_rna_phos_phos_fast
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
Fa_MbenvEnergy
)
FrameListCAP
(in
rosetta.core.fragment._core_fragment_
)
fa_elec_rna_phos_phos_fast
(in
rosetta
)
finalize_after_derivatives()
(in
Fa_MbsolvEnergy
)
FrameListIterator_
(in
rosetta.core.fragment._core_fragment_
)
fa_elec_rna_phos_sugr
(in
ScoreType
)
finalize_after_derivatives()
(in
FreeDOF_Energy
)
FrameListIterator_AP
(in
rosetta.core.fragment._core_fragment_
)
fa_elec_rna_phos_sugr
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
GaussianOverlapEnergy
)
FrameListIterator_CAP
(in
rosetta.core.fragment._core_fragment_
)
fa_elec_rna_phos_sugr
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
GenBornEnergy
)
frames()
(in
FragSet
)
fa_elec_rna_phos_sugr
(in
rosetta
)
finalize_after_derivatives()
(in
GoapEnergy
)
frames()
(in
OrderedFragSet
)
fa_elec_rna_phos_sugr_fast
(in
ScoreType
)
finalize_after_derivatives()
(in
HybridVDW_Energy
)
FrameWork
(in
rosetta.protocols.antibody._protocols_antibody_
)
fa_elec_rna_phos_sugr_fast
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
IntermolEnergy
)
framework_dependant_clusters()
(in
MutateFrameworkForCluster
)
fa_elec_rna_phos_sugr_fast
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
LK_BallEnergy
)
framework_dependant_mutations()
(in
MutateFrameworkForCluster
)
fa_elec_rna_phos_sugr_fast
(in
rosetta
)
finalize_after_derivatives()
(in
LK_PolarNonPolarEnergy
)
framework_dependant_positions()
(in
MutateFrameworkForCluster
)
fa_elec_rna_sugr_base
(in
ScoreType
)
finalize_after_derivatives()
(in
LK_hack
)
framework_region
(in
AntibodyRegionEnum
)
fa_elec_rna_sugr_base
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
LinearChainbreakEnergy
)
framework_region
(in
rosetta.protocols.antibody._protocols_antibody_
)
fa_elec_rna_sugr_base
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
LongRangeTwoBodyEnergy
)
framework_region
(in
rosetta.protocols.antibody
)
fa_elec_rna_sugr_base
(in
rosetta
)
finalize_after_derivatives()
(in
MMBondAngleEnergy
)
FrameWorkAP
(in
rosetta.protocols.antibody._protocols_antibody_
)
fa_elec_rna_sugr_base_fast
(in
ScoreType
)
finalize_after_derivatives()
(in
MMBondLengthEnergy
)
FrameWorkCAP
(in
rosetta.protocols.antibody._protocols_antibody_
)
fa_elec_rna_sugr_base_fast
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
MMLJEnergyInter
)
free_2HOprime
(in
ScoreType
)
fa_elec_rna_sugr_base_fast
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
MMLJEnergyIntra
)
free_2HOprime
(in
rosetta.core.scoring._core_scoring_
)
fa_elec_rna_sugr_base_fast
(in
rosetta
)
finalize_after_derivatives()
(in
MMTorsionEnergy
)
free_2HOprime
(in
rosetta.core.scoring
)
fa_elec_rna_sugr_sugr
(in
ScoreType
)
finalize_after_derivatives()
(in
MembraneCbetaEnergy
)
free_2HOprime
(in
rosetta
)
fa_elec_rna_sugr_sugr
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
MembraneCenPairEnergy
)
free_2HOprime_bonus()
(in
FreeDOF_Options
)
fa_elec_rna_sugr_sugr
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
MembraneEnvEnergy
)
free_base
(in
ScoreType
)
fa_elec_rna_sugr_sugr
(in
rosetta
)
finalize_after_derivatives()
(in
MembraneEnvPenalties
)
free_base
(in
rosetta.core.scoring._core_scoring_
)
fa_elec_rna_sugr_sugr_fast
(in
ScoreType
)
finalize_after_derivatives()
(in
MembraneEnvSmoothEnergy
)
free_base
(in
rosetta.core.scoring
)
fa_elec_rna_sugr_sugr_fast
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
MembraneLipo
)
free_base
(in
rosetta
)
fa_elec_rna_sugr_sugr_fast
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
MissingEnergy
)
free_data()
(in
PNatRotOptERotamerData
)
fa_elec_rna_sugr_sugr_fast
(in
rosetta
)
finalize_after_derivatives()
(in
NMerPSSMEnergy
)
free_data()
(in
SingleStructureData
)
fa_elec_sc_sc
(in
ScoreType
)
finalize_after_derivatives()
(in
NMerRefEnergy
)
free_dof
(in
ScoreType
)
fa_elec_sc_sc
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
NMerSVMEnergy
)
free_dof
(in
rosetta.core.scoring._core_scoring_
)
fa_elec_sc_sc
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
OmegaTetherEnergy
)
free_dof
(in
rosetta.core.scoring
)
fa_elec_sc_sc
(in
rosetta
)
finalize_after_derivatives()
(in
OneBodyEnergy
)
free_dof
(in
rosetta
)
FA_ElecEnergy
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
finalize_after_derivatives()
(in
OtherPoseEnergy
)
free_dof_options()
(in
EnergyMethodOptions
)
FA_ElecEnergyAP
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
finalize_after_derivatives()
(in
P_AA_Energy
)
free_res
(in
ScoreType
)
FA_ElecEnergyAroAll
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
finalize_after_derivatives()
(in
P_AA_pp_Energy
)
free_res
(in
rosetta.core.scoring._core_scoring_
)
FA_ElecEnergyAroAllAP
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
finalize_after_derivatives()
(in
PackStatEnergy
)
free_res
(in
rosetta.core.scoring
)
FA_ElecEnergyAroAllCAP
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
finalize_after_derivatives()
(in
PairEnergy
)
free_res
(in
rosetta
)
FA_ElecEnergyAroAllCreator
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
finalize_after_derivatives()
(in
PeptideBondEnergy
)
free_resource_by_job_tag()
(in
LazyResourceManager
)
FA_ElecEnergyAroAllCreatorAP
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
finalize_after_derivatives()
(in
PoissonBoltzmannEnergy
)
free_resource_by_tag()
(in
LazyResourceManager
)
FA_ElecEnergyAroAllCreatorCAP
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
finalize_after_derivatives()
(in
ProClosureEnergy
)
free_side_chain
(in
ScoreType
)
FA_ElecEnergyAroAro
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
finalize_after_derivatives()
(in
ProQ_Energy
)
free_side_chain
(in
rosetta.core.scoring._core_scoring_
)
FA_ElecEnergyAroAroAP
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
finalize_after_derivatives()
(in
RG_Energy_Fast
)
free_side_chain
(in
rosetta.core.scoring
)
FA_ElecEnergyAroAroCAP
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
finalize_after_derivatives()
(in
RG_LocalEnergy
)
free_side_chain
(in
rosetta
)
FA_ElecEnergyAroAroCreator
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
finalize_after_derivatives()
(in
RMS_Energy
)
free_side_chain_bonus()
(in
FreeDOF_Options
)
FA_ElecEnergyAroAroCreatorAP
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
finalize_after_derivatives()
(in
Rama2BOffsetEnergy
)
free_sugar_bonus()
(in
FreeDOF_Options
)
FA_ElecEnergyAroAroCreatorCAP
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
finalize_after_derivatives()
(in
RamachandranEnergy
)
free_suite
(in
ScoreType
)
FA_ElecEnergyCAP
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
finalize_after_derivatives()
(in
RamachandranEnergy2B
)
free_suite
(in
rosetta.core.scoring._core_scoring_
)
FA_ElecEnergyCreator
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
finalize_after_derivatives()
(in
ReferenceEnergy
)
free_suite
(in
rosetta.core.scoring
)
FA_ElecEnergyCreatorAP
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
finalize_after_derivatives()
(in
ReferenceEnergyNoncanonical
)
free_suite
(in
rosetta
)
FA_ElecEnergyCreatorCAP
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
finalize_after_derivatives()
(in
ResidualDipolarCouplingEnergy
)
free_suite_bonus()
(in
FreeDOF_Options
)
fa_grpelec
(in
ScoreType
)
finalize_after_derivatives()
(in
ResidualDipolarCouplingEnergy_Rohl
)
FreeDOF_Energy
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
fa_grpelec
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
SA_Energy
)
FreeDOF_EnergyAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
fa_grpelec
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
SecondaryStructureEnergy
)
FreeDOF_EnergyCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
fa_grpelec
(in
rosetta
)
finalize_after_derivatives()
(in
SequenceDependentRefEnergy
)
FreeDOF_EnergyCreator
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
FA_GrpElecEnergy
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
finalize_after_derivatives()
(in
ShortRangeTwoBodyEnergy
)
FreeDOF_EnergyCreatorAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
FA_GrpElecEnergyAP
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
finalize_after_derivatives()
(in
SmoothCenPairEnergy
)
FreeDOF_EnergyCreatorCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
FA_GrpElecEnergyCAP
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
finalize_after_derivatives()
(in
SmoothEnvEnergy
)
FreeDOF_Options
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
FA_GrpElecEnergyCreator
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
finalize_after_derivatives()
(in
SuckerEnergy
)
FreeDOF_OptionsAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
FA_GrpElecEnergyCreatorAP
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
finalize_after_derivatives()
(in
SymmetricLigandEnergy
)
FreeDOF_OptionsCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
FA_GrpElecEnergyCreatorCAP
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
finalize_after_derivatives()
(in
TwoBodyEnergy
)
freeze()
(in
RigidBodyMover
)
fa_intra_atr
(in
ScoreType
)
finalize_after_derivatives()
(in
UnfoldedStateEnergy
)
freeze_sugar_torsions()
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
fa_intra_atr
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
WaterAdductHBondEnergy
)
frequency()
(in
PairingStatEntry
)
fa_intra_atr
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
WaterAdductIntraEnergy
)
frequency_in_taboo_map()
(in
KinematicMover
)
fa_intra_atr
(in
rosetta
)
finalize_after_derivatives()
(in
WholeStructureEnergy
)
fresh_instance()
(in
RotamerDumpMover
)
fa_intra_atr_xover4
(in
ScoreType
)
finalize_after_derivatives()
(in
YHHPlanarityEnergy
)
fresh_instance()
(in
AbrelaxMover
)
fa_intra_atr_xover4
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
pHEnergy
)
fresh_instance()
(in
ClassicAbinitio
)
fa_intra_atr_xover4
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
SugarBackboneEnergy
)
fresh_instance()
(in
ConstraintFragmentSampler
)
fa_intra_atr_xover4
(in
rosetta
)
finalize_after_derivatives()
(in
DFIRE_Energy
)
fresh_instance()
(in
DomainAssembly
)
fa_intra_rep
(in
ScoreType
)
finalize_after_derivatives()
(in
NVscore
)
fresh_instance()
(in
DoubleLayerKinematicAbinitio
)
fa_intra_rep
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
OrbitalsScore
)
fresh_instance()
(in
FoldConstraints
)
fa_intra_rep
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
HolesEnergy
)
fresh_instance()
(in
FragmentSampler
)
fa_intra_rep
(in
rosetta
)
finalize_after_derivatives()
(in
HolesEnergyRes
)
fresh_instance()
(in
JumpingFoldConstraintsWrapper
)
fa_intra_rep_xover4
(in
ScoreType
)
finalize_after_derivatives()
(in
SurfEnergy
)
fresh_instance()
(in
KinematicAbinitio
)
fa_intra_rep_xover4
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
SurfVolEnergy
)
fresh_instance()
(in
KinematicTaskControl
)
fa_intra_rep_xover4
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
RG_Energy_RNA
)
fresh_instance()
(in
LoopJumpFoldCst
)
fa_intra_rep_xover4
(in
rosetta
)
finalize_after_derivatives()
(in
RNA_BulgeEnergy
)
fresh_instance()
(in
MembraneAbinitio
)
fa_intra_RNA_base_phos_atr
(in
ScoreType
)
finalize_after_derivatives()
(in
RNA_FullAtomStackingEnergy
)
fresh_instance()
(in
Protocol
)
fa_intra_RNA_base_phos_atr
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
RNA_FullAtomVDW_BasePhosphate
)
fresh_instance()
(in
ResolutionSwitcher
)
fa_intra_RNA_base_phos_atr
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
RNA_JR_SuiteEnergy
)
fresh_instance()
(in
AbscriptLoopCloserCM
)
fa_intra_RNA_base_phos_atr
(in
rosetta
)
finalize_after_derivatives()
(in
RNA_LJ_BaseEnergy
)
fresh_instance()
(in
AbscriptMover
)
fa_intra_RNA_base_phos_rep
(in
ScoreType
)
finalize_after_derivatives()
(in
RNA_Mg_Energy
)
fresh_instance()
(in
AbscriptStageMover
)
fa_intra_RNA_base_phos_rep
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
RNA_PairwiseLowResolutionEnergy
)
fresh_instance()
(in
ConstraintPreparer
)
fa_intra_RNA_base_phos_rep
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
RNA_SugarCloseEnergy
)
fresh_instance()
(in
FragmentCM
)
fa_intra_RNA_base_phos_rep
(in
rosetta
)
finalize_after_derivatives()
(in
RNA_SuiteEnergy
)
fresh_instance()
(in
FragmentJumpCM
)
fa_intra_RNA_base_phos_sol
(in
ScoreType
)
finalize_after_derivatives()
(in
RNA_TorsionEnergy
)
fresh_instance()
(in
RigidChunkCM
)
fa_intra_RNA_base_phos_sol
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
RNA_VDW_Energy
)
fresh_instance()
(in
StagePreparer
)
fa_intra_RNA_base_phos_sol
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
StackElecEnergy
)
fresh_instance()
(in
StructPerturberCM
)
fa_intra_RNA_base_phos_sol
(in
rosetta
)
finalize_after_derivatives()
(in
RNA_ChemicalShiftEnergy
)
fresh_instance()
(in
InterfaceAnalyzerMover
)
fa_intra_sol
(in
ScoreType
)
finalize_after_derivatives()
(in
RNA_ChemicalMappingEnergy
)
fresh_instance()
(in
LoopAnalyzerMover
)
fa_intra_sol
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
RNA_DataBackboneEnergy
)
fresh_instance()
(in
PackStatMover
)
fa_intra_sol
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
FastSAXSEnergy
)
fresh_instance()
(in
PeptideDeriverFilter
)
fa_intra_sol
(in
rosetta
)
finalize_after_derivatives()
(in
SAXSEnergy
)
fresh_instance()
(in
AnchoredDesignMover
)
fa_intra_sol_xover4
(in
ScoreType
)
finalize_after_derivatives()
(in
symEnergy
)
fresh_instance()
(in
AnchoredPerturbMover
)
fa_intra_sol_xover4
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
SymmetricScoreFunction
)
fresh_instance()
(in
AnchoredRefineMover
)
fa_intra_sol_xover4
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
AACompositionEnergy
)
fresh_instance()
(in
AntibodyModelerProtocol
)
fa_intra_sol_xover4
(in
rosetta
)
finalize_after_derivatives()
(in
NatbiasSecondaryStructureEnergy
)
fresh_instance()
(in
CDRsMinPackMin
)
fa_is_independent()
(in
SymmetryInfo
)
finalize_after_derivatives()
(in
OtherContextScoreFunction
)
fresh_instance()
(in
CloseOneCDRLoop
)
fa_mbenv
(in
ScoreType
)
finalize_after_derivatives()
(in
EnsembleEnergy
)
fresh_instance()
(in
GraftCDRLoopsProtocol
)
fa_mbenv
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
InterchainEnvEnergy
)
fresh_instance()
(in
GraftOneCDRLoop
)
fa_mbenv
(in
rosetta.core.scoring
)
finalize_after_derivatives()
(in
InterchainPairEnergy
)
fresh_instance()
(in
GraftedStemOptimizer
)
fa_mbenv
(in
rosetta
)
finalize_after_derivatives()
(in
ResidualDipolarCouplingEnergyRigidSegments
)
fresh_instance()
(in
H3CterInsert
)
Fa_MbenvEnergy
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
finalize_after_derivatives()
(in
SpecialRotamerEnergy
)
fresh_instance()
(in
H3PerturbCCD
)
Fa_MbenvEnergyAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
finalize_after_derivatives()
(in
PCS_Energy
)
fresh_instance()
(in
H3RefineCCD
)
Fa_MbenvEnergyCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
finalize_after_derivatives()
(in
PcsEnergy
)
fresh_instance()
(in
LHRepulsiveRamp
)
Fa_MbenvEnergyCreator
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
finalize_after_derivatives()
(in
PCS_Energy_Ts1
)
fresh_instance()
(in
ModelCDRH3
)
Fa_MbenvEnergyCreatorAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
finalize_after_derivatives()
(in
PCS_Energy_Ts2
)
fresh_instance()
(in
RefineBetaBarrel
)
Fa_MbenvEnergyCreatorCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
finalize_after_derivatives()
(in
PCS_Energy_Ts3
)
fresh_instance()
(in
RefineOneCDRLoop
)
fa_mbsolv
(in
ScoreType
)
finalize_after_derivatives()
(in
PCS_Energy_Ts4
)
fresh_instance()
(in
RefineOneCDRLoopCentroid
)
fa_mbsolv
(in
rosetta.core.scoring._core_scoring_
)
finalize_after_derivatives()
(in
PDDFEnergy
)
fresh_instance()
(in
CDRDihedralConstraintMover
)
fa_mbsolv
(in
rosetta.core.scoring
)
finalize_batch()
(in
BaseArchiveManager
)
fresh_instance()
(in
ParatopeEpitopeSiteConstraintMover
)
fa_mbsolv
(in
rosetta
)
finalize_claims()
(in
FoldandDockClaimer
)
fresh_instance()
(in
ParatopeSiteConstraintMover
)
Fa_MbsolvEnergy
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
finalize_claims()
(in
MembraneTopologyClaimer
)
fresh_instance()
(in
AntibodyDesignMover
)
Fa_MbsolvEnergyAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
finalize_claims()
(in
TopologyClaimer
)
fresh_instance()
(in
AntibodyDesignProtocol
)
Fa_MbsolvEnergyCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
finalize_compound_records()
(in
HeaderInformation
)
fresh_instance()
(in
MutateFrameworkForCluster
)
Fa_MbsolvEnergyCreator
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
finalize_experimental_technique_records()
(in
HeaderInformation
)
fresh_instance()
(in
AntibodyModeler
)
Fa_MbsolvEnergyCreatorAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
finalize_header_information()
(in
FileData
)
fresh_instance()
(in
CDRH3Modeler
)
Fa_MbsolvEnergyCreatorCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
finalize_keyword_records()
(in
HeaderInformation
)
fresh_instance()
(in
CloseOneMover
)
Fa_Membed_update()
(in
Membrane_FAEmbed
)
finalize_parse()
(in
HeaderInformation
)
fresh_instance()
(in
GraftMover
)
fa_pair
(in
ScoreType
)
finalize_simulation()
(in
BackrubMover
)
fresh_instance()
(in
GraftOneMover
)
fa_pair
(in
rosetta.core.scoring._core_scoring_
)
finalize_simulation()
(in
BackrubSidechainMover
)
fresh_instance()
(in
LoopRlxMover
)
fa_pair
(in
rosetta.core.scoring
)
finalize_simulation()
(in
AsyncMPITemperingBase
)
fresh_instance()
(in
BackrubMover
)
fa_pair
(in
rosetta
)
finalize_simulation()
(in
BiasEnergy
)
fresh_instance()
(in
BackrubProtocol
)
fa_pair_aro_aro
(in
ScoreType
)
finalize_simulation()
(in
DbTrajectoryRecorder
)
fresh_instance()
(in
BackrubSidechainMover
)
fa_pair_aro_aro
(in
rosetta.core.scoring._core_scoring_
)
finalize_simulation()
(in
FixedTemperatureController
)
fresh_instance()
(in
CanonicalSamplingMover
)
fa_pair_aro_aro
(in
rosetta.core.scoring
)
finalize_simulation()
(in
MetricRecorder
)
fresh_instance()
(in
DbTrajectoryRecorder
)
fa_pair_aro_aro
(in
rosetta
)
finalize_simulation()
(in
PDBTrajectoryRecorder
)
fresh_instance()
(in
FixedTemperatureController
)
fa_pair_aro_pol
(in
ScoreType
)
finalize_simulation()
(in
ParallelTempering
)
fresh_instance()
(in
HamiltonianExchange
)
fa_pair_aro_pol
(in
rosetta.core.scoring._core_scoring_
)
finalize_simulation()
(in
ProgressBarObserver
)
fresh_instance()
(in
MetricRecorder
)
fa_pair_aro_pol
(in
rosetta.core.scoring
)
finalize_simulation()
(in
SimulatedTempering
)
fresh_instance()
(in
MetropolisHastingsMover
)
fa_pair_aro_pol
(in
rosetta
)
finalize_simulation()
(in
TemperatureController
)
fresh_instance()
(in
PDBTrajectoryRecorder
)
fa_pair_pol_pol
(in
ScoreType
)
finalize_simulation()
(in
TemperingBase
)
fresh_instance()
(in
ParallelTempering
)
fa_pair_pol_pol
(in
rosetta.core.scoring._core_scoring_
)
finalize_simulation()
(in
ThermodynamicMover
)
fresh_instance()
(in
ProgressBarObserver
)
fa_pair_pol_pol
(in
rosetta.core.scoring
)
finalize_simulation()
(in
ThermodynamicObserver
)
fresh_instance()
(in
SidechainMetropolisHastingsMover
)
fa_pair_pol_pol
(in
rosetta
)
finalize_simulation()
(in
TrialCounterObserver
)
fresh_instance()
(in
SilentTrajectoryRecorder
)
fa_penalty()
(in
Membrane_FAEmbed
)
finalize_simulation()
(in
BalancedKicMover
)
fresh_instance()
(in
SimulatedTempering
)
fa_plane
(in
ScoreType
)
finalize_simulation()
(in
RigidBodyDeterministicSpinMover
)
fresh_instance()
(in
TemperatureController
)
fa_plane
(in
rosetta.core.scoring._core_scoring_
)
finalize_simulation()
(in
RigidBodyDofPerturbMover
)
fresh_instance()
(in
TemperingBase
)
fa_plane
(in
rosetta.core.scoring
)
finalize_simulation()
(in
RigidBodyDofRandomTransMover
)
fresh_instance()
(in
ThermodynamicMover
)
fa_plane
(in
rosetta
)
finalize_simulation()
(in
RigidBodyDofRandomizeMover
)
fresh_instance()
(in
ThermodynamicObserver
)
fa_proj()
(in
Membrane_FAEmbed
)
finalize_simulation()
(in
RigidBodyDofSeqPerturbMover
)
fresh_instance()
(in
TrialCounterObserver
)
fa_proj_coord()
(in
Membrane_FAEmbed
)
finalize_simulation()
(in
RigidBodyDofSeqRandomizeMover
)
fresh_instance()
(in
AssignToClustersMover
)
fa_proj_deriv()
(in
Membrane_FAEmbed
)
finalize_simulation()
(in
RigidBodyDofSeqTransMover
)
fresh_instance()
(in
ClusterBase
)
fa_rep
(in
ScoreType
)
finalize_simulation()
(in
RigidBodyDofTransMover
)
fresh_instance()
(in
ClusterPhilStyle
)
fa_rep
(in
rosetta.core.scoring._core_scoring_
)
finalize_simulation()
(in
RigidBodyMover
)
fresh_instance()
(in
ClusterPhilStyle_Loop
)
fa_rep
(in
rosetta.core.scoring
)
finalize_simulation()
(in
RigidBodyPerturbMover
)
fresh_instance()
(in
ClusterPhilStyle_PoseReporter
)
fa_rep
(in
rosetta
)
finalize_simulation()
(in
RigidBodyPerturbNoCenterMover
)
fresh_instance()
(in
EnsembleConstraints
)
fa_rep_dummy
(in
ScoreType
)
finalize_simulation()
(in
RigidBodyPerturbRandomJumpMover
)
fresh_instance()
(in
EnsembleConstraints_Simple
)
fa_rep_dummy
(in
rosetta.core.scoring._core_scoring_
)
finalize_simulation()
(in
RigidBodyRandomizeMover
)
fresh_instance()
(in
GatherPosesMover
)
fa_rep_dummy
(in
rosetta.core.scoring
)
finalize_simulation()
(in
RigidBodySpinMover
)
fresh_instance()
(in
CoarseRNA_LoopCloser
)
fa_rep_dummy
(in
rosetta
)
finalize_simulation()
(in
RigidBodyTransMover
)
fresh_instance()
(in
ExtraThreadingMover
)
FA_REP_SCORE
(in
rosetta.core.conformation.symmetry
)
finalize_simulation()
(in
UniformRigidBodyMover
)
fresh_instance()
(in
LoopRelaxMover
)
FA_REP_SCORE
(in
rosetta.core.conformation.symmetry._core_conformation_symmetry_
)
finalize_simulation()
(in
UniformSphereTransMover
)
fresh_instance()
(in
LoopRelaxThreadingMover
)
FA_REP_SCORE
(in
SlideCriteriaType
)
finalize_simulation()
(in
BBConRotMover
)
fresh_instance()
(in
MultiThreadingMover
)
fa_scorefxn()
(in
LoopRelaxMover
)
finalize_simulation()
(in
BBG8T3AMover
)
fresh_instance()
(in
PartialThreadingMover
)
fa_sol
(in
ScoreType
)
finalize_simulation()
(in
BBGaussianMover
)
fresh_instance()
(in
RecoverSideChainsMover
)
fa_sol
(in
rosetta.core.scoring._core_scoring_
)
finalize_simulation()
(in
BackboneMover
)
fresh_instance()
(in
StealLigandMover
)
fa_sol
(in
rosetta.core.scoring
)
finalize_simulation()
(in
ShearMover
)
fresh_instance()
(in
StealSideChainsMover
)
fa_sol
(in
rosetta
)
finalize_simulation()
(in
SmallMover
)
fresh_instance()
(in
ThreadingMover
)
fa_sol_dummy
(in
ScoreType
)
finalize_simulation()
(in
JumpRotamerSidechainMover
)
fresh_instance()
(in
ContactMap
)
fa_sol_dummy
(in
rosetta.core.scoring._core_scoring_
)
finalize_simulation()
(in
PerturbChiSidechainMover
)
fresh_instance()
(in
FitBfactorsMover
)
fa_sol_dummy
(in
rosetta.core.scoring
)
finalize_simulation()
(in
PerturbRotamerSidechainMover
)
fresh_instance()
(in
LoadDensityMapMover
)
fa_sol_dummy
(in
rosetta
)
finalize_simulation()
(in
SidechainMCMover
)
fresh_instance()
(in
RecomputeDensityMapMover
)
fa_stack
(in
ScoreType
)
finalize_simulation()
(in
SidechainMover
)
fresh_instance()
(in
SetCrystWeightMover
)
fa_stack
(in
rosetta.core.scoring._core_scoring_
)
finalize_simulation()
(in
SidechainMoverBase
)
fresh_instance()
(in
SetRefinementOptionsMover
)
fa_stack
(in
rosetta.core.scoring
)
finalize_total_energy()
(in
DunbrackEnergy
)
fresh_instance()
(in
TagPoseWithRefinementStatsMover
)
fa_stack
(in
rosetta
)
finalize_total_energy()
(in
CenRotDunEnergy
)
fresh_instance()
(in
UpdateSolventMover
)
fa_stack_aro
(in
ScoreType
)
finalize_total_energy()
(in
HPatchEnergy
)
fresh_instance()
(in
CreateAngleConstraint
)
fa_stack_aro
(in
rosetta.core.scoring._core_scoring_
)
finalize_total_energy()
(in
SurfaceEnergy
)
fresh_instance()
(in
CreateDistanceConstraint
)
fa_stack_aro
(in
rosetta.core.scoring
)
finalize_total_energy()
(in
CarbonHBondEnergy
)
fresh_instance()
(in
CreateTorsionConstraint
)
fa_stack_aro
(in
rosetta
)
finalize_total_energy()
(in
ConstraintsEnergy
)
fresh_instance()
(in
DeclareBond
)
fa_stack_lower
(in
ScoreType
)
finalize_total_energy()
(in
XtalMLEnergy
)
fresh_instance()
(in
PeptideStubMover
)
fa_stack_lower
(in
rosetta.core.scoring._core_scoring_
)
finalize_total_energy()
(in
FullatomCustomPairDistanceEnergy
)
fresh_instance()
(in
ddGMover
)
fa_stack_lower
(in
rosetta.core.scoring
)
finalize_total_energy()
(in
CentroidDisulfideEnergy
)
fresh_instance()
(in
ExposedHydrophobicsFilter
)
fa_stack_lower
(in
rosetta
)
finalize_total_energy()
(in
DisulfideMatchingEnergy
)
fresh_instance()
(in
GreedyOptMutationMover
)
fa_stack_upper
(in
ScoreType
)
finalize_total_energy()
(in
FullatomDisulfideEnergy
)
fresh_instance()
(in
ParetoOptMutationMover
)
fa_stack_upper
(in
rosetta.core.scoring._core_scoring_
)
finalize_total_energy()
(in
DNAChiEnergy
)
fresh_instance()
(in
DesignProteinBackboneAroundDNA
)
fa_stack_upper
(in
rosetta.core.scoring
)
finalize_total_energy()
(in
DNATorsionEnergy
)
fresh_instance()
(in
DnaInterfaceMinMover
)
fa_stack_upper
(in
rosetta
)
finalize_total_energy()
(in
FA_ElecEnergy
)
fresh_instance()
(in
DnaInterfaceMultiStateDesign
)
FabConstraint
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
finalize_total_energy()
(in
FA_ElecEnergyAroAll
)
fresh_instance()
(in
DnaInterfacePacker
)
FabConstraintAP
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
finalize_total_energy()
(in
FA_ElecEnergyAroAro
)
fresh_instance()
(in
SeparateDnaFromNonDna
)
FabConstraintCAP
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
finalize_total_energy()
(in
FA_GrpElecEnergy
)
fresh_instance()
(in
ConformerSwitchMover
)
FabConstraintCreator
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
finalize_total_energy()
(in
RNA_FA_ElecEnergy
)
fresh_instance()
(in
DockMCMCycle
)
FabConstraintCreatorAP
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
finalize_total_energy()
(in
ElecDensAllAtomCenEnergy
)
fresh_instance()
(in
DockMCMProtocol
)
FabConstraintCreatorCAP
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
finalize_total_energy()
(in
ElecDensCenEnergy
)
fresh_instance()
(in
DockMinMover
)
factor()
(in
TorsionFourierComponent
)
finalize_total_energy()
(in
ElecDensEnergy
)
fresh_instance()
(in
DockSetupMover
)
factorA()
(in
BBConRotMover
)
finalize_total_energy()
(in
FastDensEnergy
)
fresh_instance()
(in
DockingEnsemblePrepackProtocol
)
factorA()
(in
BBGaussianMover
)
finalize_total_energy()
(in
PattersonCorrEnergy
)
fresh_instance()
(in
DockingHighRes
)
factorB()
(in
BBConRotMover
)
finalize_total_energy()
(in
ElecDensAtomwiseEnergy
)
fresh_instance()
(in
DockingHighResFilter
)
factorB()
(in
BBGaussianMover
)
finalize_total_energy()
(in
AnalyticEtableEnergy
)
fresh_instance()
(in
DockingHighResLegacy
)
factorC()
(in
BBConRotMover
)
finalize_total_energy()
(in
BaseEtableEnergy_T_core_scoring_etable_AnalyticEtableEnergy_T
)
fresh_instance()
(in
DockingInitialPerturbation
)
factorsLTE19()
(in
rosetta.core.scoring.electron_density._core_scoring_electron_density_
)
finalize_total_energy()
(in
BaseEtableEnergy_T_core_scoring_etable_TableLookupEtableEnergy_T
)
fresh_instance()
(in
DockingLowRes
)
factorsLTE19()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
finalize_total_energy()
(in
TableLookupEtableEnergy
)
fresh_instance()
(in
DockingLowResEnsemble
)
factorsLTE5()
(in
rosetta.core.scoring.electron_density._core_scoring_electron_density_
)
finalize_total_energy()
(in
FiberDiffractionEnergy
)
fresh_instance()
(in
DockingLowResFilter
)
factorsLTE5()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
finalize_total_energy()
(in
FiberDiffractionEnergyDens
)
fresh_instance()
(in
DockingPrepackProtocol
)
factory
(in
rosetta.utility
)
finalize_total_energy()
(in
ContextDependentGeometricSolEnergy
)
fresh_instance()
(in
DockingProtocol
)
factory_begin()
(in
StoreCompoundTaskMover
)
finalize_total_energy()
(in
ContextIndependentGeometricSolEnergy
)
fresh_instance()
(in
DockingSlideIntoContact
)
factory_clear()
(in
StoreCompoundTaskMover
)
finalize_total_energy()
(in
ExactOccludedHbondSolEnergy
)
fresh_instance()
(in
EllipsoidalRandomizationMover
)
factory_end()
(in
StoreCompoundTaskMover
)
finalize_total_energy()
(in
OccludedHbondSolEnergy
)
fresh_instance()
(in
FaDockingSlideIntoContact
)
factory_name()
(in
EntityElementFactory
)
finalize_total_energy()
(in
OccludedHbondSolEnergy_onebody
)
fresh_instance()
(in
InterfaceSidechainMinMover
)
factory_register()
(in
WriteableCacheableDataFactory
)
finalize_total_energy()
(in
HackAroEnergy
)
fresh_instance()
(in
SidechainMinMover
)
factory_register()
(in
FallbackConfigurationFactory
)
finalize_total_energy()
(in
HBondEnergy
)
fresh_instance()
(in
TemperedDocking
)
factory_register()
(in
ResourceLoaderFactory
)
finalize_total_energy()
(in
DDPscore
)
fresh_instance()
(in
MPDockingMover
)
factory_register()
(in
ResourceLocatorFactory
)
finalize_total_energy()
(in
LoopCloseEnergy
)
fresh_instance()
(in
MPDockingSetupMover
)
factory_register()
(in
ResourceManagerFactory
)
finalize_total_energy()
(in
FaMPEnvEnergy
)
fresh_instance()
(in
SaneDockingProtocol
)
factory_register()
(in
ResourceOptionsFactory
)
finalize_total_energy()
(in
FaMPEnvSmoothEnergy
)
fresh_instance()
(in
AddAssemblyConstraints
)
factory_register()
(in
SilentStructFactory
)
finalize_total_energy()
(in
FaMPSolvEnergy
)
fresh_instance()
(in
AssembleLinkerMover
)
factory_register()
(in
ResFilterFactory
)
finalize_total_energy()
(in
MPCbetaEnergy
)
fresh_instance()
(in
CombineChainsMover
)
factory_register()
(in
ResLvlTaskOperationFactory
)
finalize_total_energy()
(in
MPEnvEnergy
)
fresh_instance()
(in
PostDockAssemblyScorer
)
factory_register()
(in
TaskOperationFactory
)
finalize_total_energy()
(in
MPLipoEnergy
)
fresh_instance()
(in
BfactorFittingMover
)
factory_register()
(in
ResidueSelectorFactory
)
finalize_total_energy()
(in
MPNonHelixPenalty
)
fresh_instance()
(in
DensityMorphingMover
)
factory_register()
(in
ScoringManager
)
finalize_total_energy()
(in
MPPairEnergy
)
fresh_instance()
(in
ReportFSC
)
factory_register()
(in
ConstraintFactory
)
finalize_total_energy()
(in
MPTMProjPenalty
)
fresh_instance()
(in
ScaleMapIntensities
)
factory_register()
(in
SequenceFactory
)
finalize_total_energy()
(in
MPTerminiPenalty
)
fresh_instance()
(in
SetupForDensityScoringMover
)
factory_register()
(in
EvaluatorFactory
)
finalize_total_energy()
(in
BurialEnergy
)
fresh_instance()
(in
ClientMover
)
factory_register()
(in
FeaturesReporterFactory
)
finalize_total_energy()
(in
CartesianBondedEnergy
)
fresh_instance()
(in
CoMTrackerCM
)
factory_register()
(in
FilterFactory
)
finalize_total_energy()
(in
CenHBEnergy
)
fresh_instance()
(in
EnvMover
)
factory_register()
(in
JobInputterFactory
)
finalize_total_energy()
(in
CenPairEnergy
)
fresh_instance()
(in
ScriptCM
)
factory_register()
(in
JobOutputterFactory
)
finalize_total_energy()
(in
CenRotEnvEnergy
)
fresh_instance()
(in
MultipleDomainMover
)
factory_register()
(in
DataLoaderFactory
)
finalize_total_energy()
(in
CenRotPairEnergy
)
fresh_instance()
(in
RNA_DeNovoProtocol
)
factory_register()
(in
RDFFunctionFactory
)
finalize_total_energy()
(in
ChainbreakEnergy
)
fresh_instance()
(in
RNA_FragmentMover
)
factory_register()
(in
LoopsDefinerFactory
)
finalize_total_energy()
(in
ChemicalShiftAnisotropyEnergy
)
fresh_instance()
(in
RNA_LoopCloser
)
factory_register()
(in
MoverFactory
)
finalize_total_energy()
(in
ContactOrderEnergy
)
fresh_instance()
(in
RNA_Minimizer
)
factory_register()
(in
PosePropertyReporterFactory
)
finalize_total_energy()
(in
ContextDependentLRTwoBodyEnergy
)
fresh_instance()
(in
RNA_Relaxer
)
factory_register()
(in
PoseSelectorFactory
)
finalize_total_energy()
(in
ContextDependentOneBodyEnergy
)
fresh_instance()
(in
ReportToDB
)
factory_register()
(in
RotamerRecoveryFactory
)
finalize_total_energy()
(in
ContextDependentTwoBodyEnergy
)
fresh_instance()
(in
TrajectoryReportToDB
)
facts
(in
rosetta.core.scoring
)
finalize_total_energy()
(in
ContextIndependentLRTwoBodyEnergy
)
fresh_instance()
(in
SetupForFibrilMover
)
facts_elec
(in
ScoreType
)
finalize_total_energy()
(in
ContextIndependentOneBodyEnergy
)
fresh_instance()
(in
CalculatorFilter
)
facts_elec
(in
rosetta.core.scoring._core_scoring_
)
finalize_total_energy()
(in
ContextIndependentTwoBodyEnergy
)
fresh_instance()
(in
CombinedFilter
)
facts_elec
(in
rosetta.core.scoring
)
finalize_total_energy()
(in
CustomAtomPairEnergy
)
fresh_instance()
(in
CompoundFilter
)
facts_elec
(in
rosetta
)
finalize_total_energy()
(in
D2H_SA_Energy
)
fresh_instance()
(in
ContingentFilter
)
FACTS_GET_ALL_BORN_RADII
(in
rosetta.basic
)
finalize_total_energy()
(in
DNA_BaseEnergy
)
fresh_instance()
(in
FalseFilter
)
FACTS_GET_ALL_BORN_RADII
(in
rosetta.basic._basic_
)
finalize_total_energy()
(in
DipolarCouplingEnergy
)
fresh_instance()
(in
Filter
)
FACTS_GET_ALL_BORN_RADII
(in
ProfTag
)
finalize_total_energy()
(in
DirectReadoutEnergy
)
fresh_instance()
(in
IfThenFilter
)
FACTS_POSE_INFO
(in
Enum
)
finalize_total_energy()
(in
DistanceChainbreakEnergy
)
fresh_instance()
(in
MoveBeforeFilter
)
FACTS_POSE_INFO
(in
CacheableDataType
)
finalize_total_energy()
(in
EnergyMethod
)
fresh_instance()
(in
ReplicateFilter
)
FACTS_ROTAMER_BACKGROUND_ENERGIES
(in
rosetta.basic
)
finalize_total_energy()
(in
EnvEnergy
)
fresh_instance()
(in
StochasticFilter
)
FACTS_ROTAMER_BACKGROUND_ENERGIES
(in
rosetta.basic._basic_
)
finalize_total_energy()
(in
EnvSmoothEnergy
)
fresh_instance()
(in
TimeFilter
)
FACTS_ROTAMER_BACKGROUND_ENERGIES
(in
ProfTag
)
finalize_total_energy()
(in
Fa_MbenvEnergy
)
fresh_instance()
(in
TrueFilter
)
FACTS_ROTAMER_PAIR_ENERGIES
(in
rosetta.basic
)
finalize_total_energy()
(in
Fa_MbsolvEnergy
)
fresh_instance()
(in
BluePrintBDR
)
FACTS_ROTAMER_PAIR_ENERGIES
(in
rosetta.basic._basic_
)
finalize_total_energy()
(in
FreeDOF_Energy
)
fresh_instance()
(in
CircularPermutation
)
FACTS_ROTAMER_PAIR_ENERGIES
(in
ProfTag
)
finalize_total_energy()
(in
GaussianOverlapEnergy
)
fresh_instance()
(in
MatchResiduesMover
)
facts_sasa
(in
ScoreType
)
finalize_total_energy()
(in
GenBornEnergy
)
fresh_instance()
(in
SheetConstraintsRCG
)
facts_sasa
(in
rosetta.core.scoring._core_scoring_
)
finalize_total_energy()
(in
GoapEnergy
)
fresh_instance()
(in
CoreDunbrackFilter
)
facts_sasa
(in
rosetta.core.scoring
)
finalize_total_energy()
(in
HybridVDW_Energy
)
fresh_instance()
(in
FragQualFilter
)
facts_sasa
(in
rosetta
)
finalize_total_energy()
(in
IntermolEnergy
)
fresh_instance()
(in
HSSTripletFilter
)
FACTS_SETUP_FOR_PACKING
(in
rosetta.basic
)
finalize_total_energy()
(in
LK_BallEnergy
)
fresh_instance()
(in
HelixKinkFilter
)
FACTS_SETUP_FOR_PACKING
(in
rosetta.basic._basic_
)
finalize_total_energy()
(in
LK_PolarNonPolarEnergy
)
fresh_instance()
(in
HelixPairingFilter
)
FACTS_SETUP_FOR_PACKING
(in
ProfTag
)
finalize_total_energy()
(in
LK_hack
)
fresh_instance()
(in
InterlockingAromaFilter
)
facts_solv
(in
ScoreType
)
finalize_total_energy()
(in
LinearChainbreakEnergy
)
fresh_instance()
(in
NcontactsFilter
)
facts_solv
(in
rosetta.core.scoring._core_scoring_
)
finalize_total_energy()
(in
LongRangeTwoBodyEnergy
)
fresh_instance()
(in
ParallelBetaPairingPreferenceFilter
)
facts_solv
(in
rosetta.core.scoring
)
finalize_total_energy()
(in
MMBondAngleEnergy
)
fresh_instance()
(in
SecondaryStructureCountFilter
)
facts_solv
(in
rosetta
)
finalize_total_energy()
(in
MMBondLengthEnergy
)
fresh_instance()
(in
SecondaryStructureFilter
)
fade_energy()
(in
HBondOptions
)
finalize_total_energy()
(in
MMLJEnergyInter
)
fresh_instance()
(in
SecondaryStructureHasResidueFilter
)
fade_energy()
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
finalize_total_energy()
(in
MMLJEnergyIntra
)
fresh_instance()
(in
SheetTopologyFilter
)
fade_zone()
(in
FadeFunc
)
finalize_total_energy()
(in
MMTorsionEnergy
)
fresh_instance()
(in
SetAACompositionPotential
)
FadeFunc
(in
rosetta.core.scoring.func._core_scoring_func_
)
finalize_total_energy()
(in
MembraneCbetaEnergy
)
fresh_instance()
(in
SetSecStructEnergies
)
FadeFuncAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
finalize_total_energy()
(in
MembraneCenPairEnergy
)
fresh_instance()
(in
FlexPacker
)
FadeFuncCAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
finalize_total_energy()
(in
MembraneEnvEnergy
)
fresh_instance()
(in
FlexPepDockingAbInitio
)
FadeInterval
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
finalize_total_energy()
(in
MembraneEnvPenalties
)
fresh_instance()
(in
FlexPepDockingLowRes
)
FadeIntervalAP
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
finalize_total_energy()
(in
MembraneEnvSmoothEnergy
)
fresh_instance()
(in
FlexPepDockingProtocol
)
FadeIntervalCAP
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
finalize_total_energy()
(in
MembraneLipo
)
fresh_instance()
(in
FloppyTailMover
)
FaDockingSlideIntoContact
(in
rosetta.protocols.docking._protocols_docking_
)
finalize_total_energy()
(in
MissingEnergy
)
fresh_instance()
(in
FilterStructs
)
FaDockingSlideIntoContactAP
(in
rosetta.protocols.docking._protocols_docking_
)
finalize_total_energy()
(in
NMerPSSMEnergy
)
fresh_instance()
(in
FilterStructs_Packstat
)
FaDockingSlideIntoContactCAP
(in
rosetta.protocols.docking._protocols_docking_
)
finalize_total_energy()
(in
NMerRefEnergy
)
fresh_instance()
(in
FilterStructs_TotalCharge
)
FAELEC_CONTEXT_DATA
(in
Enum
)
finalize_total_energy()
(in
NMerSVMEnergy
)
fresh_instance()
(in
FlxbbDesign
)
FAELEC_CONTEXT_DATA
(in
CacheableDataType
)
finalize_total_energy()
(in
OmegaTetherEnergy
)
fresh_instance()
(in
FlxbbDesignPack
)
FAElecContextData
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
finalize_total_energy()
(in
OneBodyEnergy
)
fresh_instance()
(in
InterlockAroma
)
FAElecContextDataAP
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
finalize_total_energy()
(in
OtherPoseEnergy
)
fresh_instance()
(in
BDR
)
FAElecContextDataCAP
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
finalize_total_energy()
(in
P_AA_Energy
)
fresh_instance()
(in
VarLengthBuild
)
fafilter()
(in
LoopHashMoverWrapper
)
finalize_total_energy()
(in
P_AA_pp_Energy
)
fresh_instance()
(in
RemodelConstraintGenerator
)
FAIL_BAD_INPUT
(in
rosetta
)
finalize_total_energy()
(in
PackStatEnergy
)
fresh_instance()
(in
NonlocalFrags
)
FAIL_BAD_INPUT
(in
rosetta.protocols.moves
)
finalize_total_energy()
(in
PairEnergy
)
fresh_instance()
(in
TorsionFragmentMover
)
FAIL_BAD_INPUT
(in
rosetta.protocols.moves._protocols_moves_
)
finalize_total_energy()
(in
PeptideBondEnergy
)
fresh_instance()
(in
GeneralizedKIC
)
FAIL_BAD_INPUT
(in
MoverStatus
)
finalize_total_energy()
(in
PoissonBoltzmannEnergy
)
fresh_instance()
(in
EntityElement
)
FAIL_DO_NOT_RETRY
(in
rosetta
)
finalize_total_energy()
(in
ProClosureEnergy
)
fresh_instance()
(in
AnchoredGraftMover
)
FAIL_DO_NOT_RETRY
(in
rosetta.protocols.moves
)
finalize_total_energy()
(in
ProQ_Energy
)
fresh_instance()
(in
CCDEndsGraftMover
)
FAIL_DO_NOT_RETRY
(in
rosetta.protocols.moves._protocols_moves_
)
finalize_total_energy()
(in
RG_Energy_Fast
)
fresh_instance()
(in
GraftMoverBase
)
FAIL_DO_NOT_RETRY
(in
MoverStatus
)
finalize_total_energy()
(in
RG_LocalEnergy
)
fresh_instance()
(in
DeleteRegionMover
)
FAIL_RETRY
(in
rosetta
)
finalize_total_energy()
(in
RMS_Energy
)
fresh_instance()
(in
InsertPoseIntoPoseMover
)
FAIL_RETRY
(in
rosetta.protocols.moves
)
finalize_total_energy()
(in
Rama2BOffsetEnergy
)
fresh_instance()
(in
KeepRegionMover
)
FAIL_RETRY
(in
rosetta.protocols.moves._protocols_moves_
)
finalize_total_energy()
(in
RamachandranEnergy
)
fresh_instance()
(in
ReplaceRegionMover
)
FAIL_RETRY
(in
MoverStatus
)
finalize_total_energy()
(in
RamachandranEnergy2B
)
fresh_instance()
(in
BackboneGridSampler
)
Failure
(in
rosetta.protocols.loops.loop_mover
)
finalize_total_energy()
(in
ReferenceEnergy
)
fresh_instance()
(in
BundleGridSampler
)
Failure
(in
rosetta.protocols.loops.loop_mover._protocols_loops_loop_mover_
)
finalize_total_energy()
(in
ReferenceEnergyNoncanonical
)
fresh_instance()
(in
FitSimpleHelix
)
Failure
(in
LoopResult
)
finalize_total_energy()
(in
ResidualDipolarCouplingEnergy
)
fresh_instance()
(in
MakeBundle
)
fake_hit()
(in
rosetta.protocols.match._protocols_match_
)
finalize_total_energy()
(in
ResidualDipolarCouplingEnergy_Rohl
)
fresh_instance()
(in
MakeBundleHelix
)
fallback()
(in
CDRSeqDesignOptions
)
finalize_total_energy()
(in
SA_Energy
)
fresh_instance()
(in
PerturbBundle
)
fallback_configuration
(in
rosetta.basic.resource_manager
)
finalize_total_energy()
(in
SecondaryStructureEnergy
)
fresh_instance()
(in
PerturbBundleHelix
)
fallback_specified()
(in
FallbackConfiguration
)
finalize_total_energy()
(in
SequenceDependentRefEnergy
)
fresh_instance()
(in
BackboneTorsionPerturbation
)
fallback_specified()
(in
NativeFallbackConfiguration
)
finalize_total_energy()
(in
ShortRangeTwoBodyEnergy
)
fresh_instance()
(in
BackboneTorsionSampler
)
fallback_specified()
(in
LoopsFileFallbackConfiguration
)
finalize_total_energy()
(in
SmoothCenPairEnergy
)
fresh_instance()
(in
CartesianHybridize
)
fallback_specified()
(in
SurfaceVectorFallbackConfiguration
)
finalize_total_energy()
(in
SmoothEnvEnergy
)
fresh_instance()
(in
CartesianSampler
)
fallback_strategy()
(in
CDRSeqDesignOptions
)
finalize_total_energy()
(in
SuckerEnergy
)
fresh_instance()
(in
ChunkTrialMover
)
FallbackConfiguration
(in
rosetta.basic.resource_manager._basic_resource_manager_
)
finalize_total_energy()
(in
SymmetricLigandEnergy
)
fresh_instance()
(in
DomainAssembly
)
FallbackConfigurationAP
(in
rosetta.basic.resource_manager._basic_resource_manager_
)
finalize_total_energy()
(in
TwoBodyEnergy
)
fresh_instance()
(in
HybridizeProtocol
)
FallbackConfigurationCAP
(in
rosetta.basic.resource_manager._basic_resource_manager_
)
finalize_total_energy()
(in
UnfoldedStateEnergy
)
fresh_instance()
(in
InsertChunkMover
)
FallbackConfigurationCreator
(in
rosetta.basic.resource_manager._basic_resource_manager_
)
finalize_total_energy()
(in
WaterAdductHBondEnergy
)
fresh_instance()
(in
MRMover
)
FallbackConfigurationCreatorAP
(in
rosetta.basic.resource_manager._basic_resource_manager_
)
finalize_total_energy()
(in
WaterAdductIntraEnergy
)
fresh_instance()
(in
WeightedFragmentSmoothTrialMover
)
FallbackConfigurationCreatorCAP
(in
rosetta.basic.resource_manager._basic_resource_manager_
)
finalize_total_energy()
(in
WholeStructureEnergy
)
fresh_instance()
(in
WeightedFragmentTrialMover
)
FallbackConfigurationFactory
(in
rosetta.basic.resource_manager._basic_resource_manager_
)
finalize_total_energy()
(in
YHHPlanarityEnergy
)
fresh_instance()
(in
IdealizeMover
)
FallbackConfigurationFactoryAP
(in
rosetta.basic.resource_manager._basic_resource_manager_
)
finalize_total_energy()
(in
pHEnergy
)
fresh_instance()
(in
FragmentLookupFilter
)
FallbackConfigurationFactoryCAP
(in
rosetta.basic.resource_manager._basic_resource_manager_
)
finalize_total_energy()
(in
SugarBackboneEnergy
)
fresh_instance()
(in
BalancedKicMover
)
false_behavior()
(in
StoreCompoundTaskMover
)
finalize_total_energy()
(in
DFIRE_Energy
)
fresh_instance()
(in
KicMover
)
false_movemap()
(in
LoopMover
)
finalize_total_energy()
(in
NVscore
)
fresh_instance()
(in
AddHydrogen
)
false_negative
(in
RocStatus
)
finalize_total_energy()
(in
OrbitalsScore
)
fresh_instance()
(in
AddHydrogens
)
false_negative
(in
rosetta.numeric._numeric_
)
finalize_total_energy()
(in
HolesEnergy
)
fresh_instance()
(in
AtomCountFilter
)
false_negative
(in
rosetta.numeric
)
finalize_total_energy()
(in
HolesEnergyRes
)
fresh_instance()
(in
ChainExistsFilter
)
false_positive
(in
RocStatus
)
finalize_total_energy()
(in
SurfEnergy
)
fresh_instance()
(in
CompleteConnectionsFilter
)
false_positive
(in
rosetta.numeric._numeric_
)
finalize_total_energy()
(in
SurfVolEnergy
)
fresh_instance()
(in
CompoundTranslate
)
false_positive
(in
rosetta.numeric
)
finalize_total_energy()
(in
RG_Energy_RNA
)
fresh_instance()
(in
ComputeLigandRDF
)
FalseFilter
(in
rosetta.protocols.filters._protocols_filters_
)
finalize_total_energy()
(in
RNA_BulgeEnergy
)
fresh_instance()
(in
FinalMinimizer
)
FalseFilterAP
(in
rosetta.protocols.filters._protocols_filters_
)
finalize_total_energy()
(in
RNA_FullAtomStackingEnergy
)
fresh_instance()
(in
GrowLigand
)
FalseFilterCAP
(in
rosetta.protocols.filters._protocols_filters_
)
finalize_total_energy()
(in
RNA_FullAtomVDW_BasePhosphate
)
fresh_instance()
(in
HBondAcceptorFilter
)
FalseFilterCreator
(in
rosetta.protocols.filters._protocols_filters_
)
finalize_total_energy()
(in
RNA_JR_SuiteEnergy
)
fresh_instance()
(in
HBondDonorFilter
)
FalseFilterCreatorAP
(in
rosetta.protocols.filters._protocols_filters_
)
finalize_total_energy()
(in
RNA_Mg_Energy
)
fresh_instance()
(in
HeavyAtomFilter
)
FalseFilterCreatorCAP
(in
rosetta.protocols.filters._protocols_filters_
)
finalize_total_energy()
(in
RNA_PairwiseLowResolutionEnergy
)
fresh_instance()
(in
HighResDocker
)
FaMPEnv
(in
rosetta
)
finalize_total_energy()
(in
RNA_SugarCloseEnergy
)
fresh_instance()
(in
InterfaceScoreCalculator
)
FaMPEnv
(in
rosetta.core.scoring
)
finalize_total_energy()
(in
RNA_SuiteEnergy
)
fresh_instance()
(in
LigandDesign
)
FaMPEnv
(in
rosetta.core.scoring._core_scoring_
)
finalize_total_energy()
(in
RNA_TorsionEnergy
)
fresh_instance()
(in
MinimizeBackbone
)
FaMPEnv
(in
ScoreType
)
finalize_total_energy()
(in
RNA_VDW_Energy
)
fresh_instance()
(in
MinimizeLigand
)
FaMPEnvEnergy
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
finalize_total_energy()
(in
StackElecEnergy
)
fresh_instance()
(in
MolarMassFilter
)
FaMPEnvEnergyAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
finalize_total_energy()
(in
RNA_ChemicalShiftEnergy
)
fresh_instance()
(in
MolecularMassFilter
)
FaMPEnvEnergyCAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
finalize_total_energy()
(in
RNA_ChemicalShiftPotential
)
fresh_instance()
(in
RandomConformerMover
)
FaMPEnvEnergyCreator
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
finalize_total_energy()
(in
RNA_ChemicalMappingEnergy
)
fresh_instance()
(in
RandomConformers
)
FaMPEnvEnergyCreatorAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
finalize_total_energy()
(in
RNA_DataBackboneEnergy
)
fresh_instance()
(in
RigidSearchMover
)
FaMPEnvEnergyCreatorCAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
finalize_total_energy()
(in
FastSAXSEnergy
)
fresh_instance()
(in
Rotate
)
FaMPEnvSmooth
(in
rosetta
)
finalize_total_energy()
(in
SAXSEnergy
)
fresh_instance()
(in
Rotates
)
FaMPEnvSmooth
(in
rosetta.core.scoring
)
finalize_total_energy()
(in
symEnergy
)
fresh_instance()
(in
SlideTogether
)
FaMPEnvSmooth
(in
rosetta.core.scoring._core_scoring_
)
finalize_total_energy()
(in
AACompositionEnergy
)
fresh_instance()
(in
StartFrom
)
FaMPEnvSmooth
(in
ScoreType
)
finalize_total_energy()
(in
NatbiasSecondaryStructureEnergy
)
fresh_instance()
(in
TetherLigand
)
FaMPEnvSmoothEnergy
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
finalize_total_energy()
(in
EnsembleEnergy
)
fresh_instance()
(in
Transform
)
FaMPEnvSmoothEnergyAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
finalize_total_energy()
(in
InterchainEnvEnergy
)
fresh_instance()
(in
Translate
)
FaMPEnvSmoothEnergyCAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
finalize_total_energy()
(in
InterchainPairEnergy
)
fresh_instance()
(in
UnconstrainedTorsionsMover
)
FaMPEnvSmoothEnergyCreator
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
finalize_total_energy()
(in
ResidualDipolarCouplingEnergyRigidSegments
)
fresh_instance()
(in
WriteLigandMolFile
)
FaMPEnvSmoothEnergyCreatorAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
finalize_total_energy()
(in
SpecialRotamerEnergy
)
fresh_instance()
(in
LoopBuildMover
)
FaMPEnvSmoothEnergyCreatorCAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
finalize_total_energy()
(in
PCS_Energy
)
fresh_instance()
(in
LoopmodelWrapper
)
FaMPSolv
(in
rosetta
)
finalize_total_energy()
(in
PcsEnergy
)
fresh_instance()
(in
LoopBuilder
)
FaMPSolv
(in
rosetta.core.scoring
)
finalize_total_energy()
(in
PCS_Energy_Ts1
)
fresh_instance()
(in
LoopModeler
)
FaMPSolv
(in
rosetta.core.scoring._core_scoring_
)
finalize_total_energy()
(in
PCS_Energy_Ts2
)
fresh_instance()
(in
LoopMover
)
FaMPSolv
(in
ScoreType
)
finalize_total_energy()
(in
PCS_Energy_Ts3
)
fresh_instance()
(in
LoopProtocol
)
FaMPSolvEnergy
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
finalize_total_energy()
(in
PCS_Energy_Ts4
)
fresh_instance()
(in
MinimizationRefiner
)
FaMPSolvEnergyAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
finalize_total_energy()
(in
PDDFEnergy
)
fresh_instance()
(in
RepackingRefiner
)
FaMPSolvEnergyCAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
FinalizeAromatic()
(in
PossibleAtomTypesForAtom
)
fresh_instance()
(in
RotamerTrialsRefiner
)
FaMPSolvEnergyCreator
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
finalized()
(in
StrandPairingSet
)
fresh_instance()
(in
LegacyKicSampler
)
FaMPSolvEnergyCreatorAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
finalized_energies()
(in
Energies
)
fresh_instance()
(in
AcceptanceCheck
)
FaMPSolvEnergyCreatorCAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
FinalizeNitrogenSingleDouble()
(in
PossibleAtomTypesForAtom
)
fresh_instance()
(in
LoopFilter
)
FARFAR_setup_using_user_input_VDW_pose()
(in
RNA_VDW_BinChecker
)
FinalizeNitrogenThreeSingle()
(in
PossibleAtomTypesForAtom
)
fresh_instance()
(in
LoopMoverGroup
)
farna
(in
rosetta.protocols
)
FinalizeNitrogenTwoSingle()
(in
PossibleAtomTypesForAtom
)
fresh_instance()
(in
PrepareForCentroid
)
FARRAY_MANIPULATION
(in
rosetta.basic
)
FinalizeOxygenSingleDouble()
(in
PossibleAtomTypesForAtom
)
fresh_instance()
(in
PrepareForFullatom
)
FARRAY_MANIPULATION
(in
rosetta.basic._basic_
)
FinalizeOxygenThreeSingle()
(in
PossibleAtomTypesForAtom
)
fresh_instance()
(in
FastGapMover
)
FARRAY_MANIPULATION
(in
ProfTag
)
FinalizeOxygenTwoSingle()
(in
PossibleAtomTypesForAtom
)
fresh_instance()
(in
LoopHashDiversifier
)
farray_to_array()
(in
DataBuffer
)
FinalizeUnhybridized()
(in
PossibleAtomTypesForAtom
)
fresh_instance()
(in
LoopHashLibrary
)
FAScatter
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
FinalMinimizer
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
fresh_instance()
(in
LoopHashMoverWrapper
)
FAScatterAP
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
FinalMinimizerAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
fresh_instance()
(in
LoopHashRelaxProtocol
)
FAScatterCAP
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
FinalMinimizerCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
fresh_instance()
(in
Mover_LoopHashRefine
)
fascore()
(in
FASelectSlidingWindowLoopClosure
)
FinalMinimizerCreator
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
fresh_instance()
(in
FoldTreeFromLoops
)
FASelectSlidingWindowLoopClosure
(in
rosetta.protocols.loops.loop_closure.ccd._protocols_loops_loop_closure_ccd_
)
FinalMinimizerCreatorAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
fresh_instance()
(in
CCDLoopClosureMover
)
FASelectSlidingWindowLoopClosureAP
(in
rosetta.protocols.loops.loop_closure.ccd._protocols_loops_loop_closure_ccd_
)
FinalMinimizerCreatorCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
fresh_instance()
(in
FASelectSlidingWindowLoopClosure
)
FASelectSlidingWindowLoopClosureCAP
(in
rosetta.protocols.loops.loop_closure.ccd._protocols_loops_loop_closure_ccd_
)
find()
(in
WriteableCacheableMap
)
fresh_instance()
(in
SlidingWindowLoopClosure
)
fasol_cubic_poly_far_xhi()
(in
Etable
)
find()
(in
MoveMap
)
fresh_instance()
(in
WidthFirstSlidingWindowLoopClosure
)
fasol_cubic_poly_far_xlo()
(in
Etable
)
find()
(in
PDBPoseMap
)
fresh_instance()
(in
KinematicMover
)
fast()
(in
IdealizeMover
)
find()
(in
ResidueConstraints
)
fresh_instance()
(in
KinematicWrapper
)
fast2DRotAlignPose()
(in
rosetta.protocols.electron_density._protocols_electron_density_
)
find_antiparallel()
(in
StrandBundleFeatures
)
fresh_instance()
(in
LoopCM
)
fast_ccd_close_loops()
(in
rosetta.protocols.loops.loop_mover.perturb._protocols_loops_loop_mover_perturb_
)
find_attach_pt()
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
fresh_instance()
(in
LoopRefineInnerCycle
)
fast_forward()
(in
JumpStepWiseSampler
)
find_automatically()
(in
AddChainBreak
)
fresh_instance()
(in
LoopRefineInnerCycleContainer
)
fast_forward()
(in
NoOpStepWiseSampler
)
find_basepairs()
(in
rosetta.core.scoring.dna._core_scoring_dna_
)
fresh_instance()
(in
RepackTrial
)
fast_forward()
(in
StepWiseSamplerOneTorsion
)
find_basepairs()
(in
rosetta.protocols.dna._protocols_dna_
)
fresh_instance()
(in
ShearMinCCDTrial
)
fast_forward()
(in
StepWiseSamplerOneValue
)
find_bonds_in_rings()
(in
rosetta.core.chemical._core_chemical_
)
fresh_instance()
(in
SmallMinCCDTrial
)
fast_forward()
(in
StepWiseSamplerOneValueComb
)
find_chi_bonds()
(in
rosetta.core.chemical._core_chemical_
)
fresh_instance()
(in
MakeRotLibMover
)
fast_forward()
(in
StepWiseSamplerSized
)
find_chunk()
(in
VallProvider
)
fresh_instance()
(in
MatcherMover
)
fast_forward()
(in
StepWiseSamplerSizedAny
)
find_closest_atom()
(in
rosetta.protocols.metal_interface._protocols_metal_interface_
)
fresh_instance()
(in
ClashCheckFilter
)
fast_forward()
(in
StepWiseSamplerSizedComb
)
find_closest_backbone()
(in
IRCollection
)
fresh_instance()
(in
ExtractSubposeMover
)
fast_forward()
(in
CopyDofStepWiseSampler
)
Find_Closest_Intersect_SQ()
(in
rosetta.protocols.pockets._protocols_pockets_
)
fresh_instance()
(in
GetRBDOFValues
)
fast_forward()
(in
ResidueAlternativeStepWiseSampler
)
find_closest_to_average()
(in
DecoySetEvaluation
)
fresh_instance()
(in
InterfacePackingFilter
)
fast_forward()
(in
ResidueAlternativeStepWiseSamplerComb
)
find_connected_components()
(in
rosetta.core.graph._core_graph_
)
fresh_instance()
(in
MatDesGreedyOptMutationMover
)
fast_forward()
(in
ResidueListStepWiseSampler
)
find_connecting_jump()
(in
rosetta.protocols.forge.methods._protocols_forge_methods_
)
fresh_instance()
(in
OligomericAverageDegreeFilter
)
fast_forward()
(in
InputStreamStepWiseSampler
)
find_cutpoint()
(in
rosetta.protocols.forge.methods._protocols_forge_methods_
)
fresh_instance()
(in
SchemePlaceMotifsMover
)
fast_forward()
(in
ProteinBetaAntiParallelStepWiseSampler
)
find_cutpoint_variants()
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
fresh_instance()
(in
SymDofMover
)
fast_forward()
(in
ProteinFragmentStepWiseSampler
)
find_data()
(in
BinTransitionCalculator
)
fresh_instance()
(in
SymUnsatHbondFilter
)
fast_forward()
(in
ProteinMainChainStepWiseSampler
)
find_data_and_bin()
(in
BinTransitionCalculator
)
fresh_instance()
(in
CartesianMD
)
fast_forward()
(in
RigidBodyStepWiseSampler
)
find_downstream_connection_res()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
fresh_instance()
(in
MDBase
)
fast_forward()
(in
RigidBodyStepWiseSamplerWithResidueAlternatives
)
find_edge()
(in
Graph
)
fresh_instance()
(in
MedalExchangeMover
)
fast_forward()
(in
RigidBodyStepWiseSamplerWithResidueList
)
find_edge()
(in
Node
)
fresh_instance()
(in
MedalMover
)
fast_forward()
(in
RNA_ChiStepWiseSampler
)
find_edge()
(in
InteractionGraphBase
)
fresh_instance()
(in
AddMPLigandMover
)
fast_forward()
(in
RNA_KinematicCloser
)
find_edge()
(in
NodeBase
)
fresh_instance()
(in
AddMembraneMover
)
fast_forward()
(in
RNA_NucleosideStepWiseSampler
)
find_energy_edge()
(in
EnergyGraph
)
fresh_instance()
(in
FlipMover
)
fast_forward()
(in
RNA_SugarStepWiseSampler
)
find_existing_residues()
(in
rosetta.protocols.evaluation._protocols_evaluation_
)
fresh_instance()
(in
MembranePositionFromTopologyMover
)
fast_forward()
(in
RNA_SuiteStepWiseSampler
)
find_filter_or_die()
(in
rosetta.protocols.moves._protocols_moves_
)
fresh_instance()
(in
RandomPositionRotationMover
)
fast_forward()
(in
AlignRMSD_Screener
)
find_first_interface_residue()
(in
Interface
)
fresh_instance()
(in
RandomPositionTranslationMover
)
fast_forward()
(in
AnchorSugarScreener
)
find_first_slice()
(in
LeeRichards
)
fresh_instance()
(in
RotationMover
)
fast_forward()
(in
BaseBinMapUpdater
)
find_hits()
(in
Matcher
)
fresh_instance()
(in
SetMembraneCenterMover
)
fast_forward()
(in
BaseCentroidScreener
)
find_in_pose_if_missing_from_header()
(in
EnzCstTemplateRes
)
fresh_instance()
(in
SetMembraneNormalMover
)
fast_forward()
(in
BulgeApplier
)
find_index_for_loop_landing_at_domain()
(in
LoopCycle
)
fresh_instance()
(in
SetMembranePositionMover
)
fast_forward()
(in
CentroidDistanceScreener
)
find_index_in_other_pose_list()
(in
FullModelInfo
)
fresh_instance()
(in
TransformIntoMembraneMover
)
fast_forward()
(in
FastForwardToNextResidueAlternative
)
find_jump_number_at_suite()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
fresh_instance()
(in
TranslationMover
)
fast_forward()
(in
FastForwardToNextRigidBody
)
find_length()
(in
DatabaseThread
)
fresh_instance()
(in
TranslationRotationMover
)
fast_forward()
(in
IntegrationTestBreaker
)
find_ligands()
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
fresh_instance()
(in
SymmetricAddMembraneMover
)
fast_forward()
(in
O2PrimeScreener
)
find_lowest_constraint_energy_residue()
(in
rosetta.protocols.protein_interface_design._protocols_protein_interface_design_
)
fresh_instance()
(in
VisualizeEmbeddingMover
)
fast_forward()
(in
PackScreener
)
find_max_frag()
(in
TMalign
)
fresh_instance()
(in
VisualizeMembraneMover
)
fast_forward()
(in
PartitionContactScreener
)
find_max_r()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
fresh_instance()
(in
ZincHeterodimerMover
)
fast_forward()
(in
PhosphateScreener
)
find_metalbinding_atoms()
(in
rosetta.core.util._core_util_
)
fresh_instance()
(in
MotifGraftMover
)
fast_forward()
(in
PoseSelectionScreener
)
find_min_xyz()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
fresh_instance()
(in
MotifDnaPacker
)
fast_forward()
(in
ProteinCCD_ClosureScreener
)
find_minimization_edge()
(in
MinimizationGraph
)
fresh_instance()
(in
CompositionMover
)
fast_forward()
(in
RNA_ChainClosableGeometryResidueBasedScreener
)
find_motifs()
(in
MotifHash
)
fresh_instance()
(in
CycleMover
)
fast_forward()
(in
RNA_ChainClosableGeometryScreener
)
find_motifs_with_radius()
(in
MotifHash
)
fresh_instance()
(in
CyclicMover
)
fast_forward()
(in
RNA_ChainClosableGeometryStubBasedScreener
)
find_mover_or_die()
(in
rosetta.protocols.moves._protocols_moves_
)
fresh_instance()
(in
DsspMover
)
fast_forward()
(in
RNA_ChainClosureScreener
)
find_nbr_dist()
(in
rosetta.core.chemical._core_chemical_
)
fresh_instance()
(in
FilterMover
)
fast_forward()
(in
ResidueContactScreener
)
find_nearest_disulfide()
(in
rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
)
fresh_instance()
(in
FilterReporterMover
)
fast_forward()
(in
SampleApplier
)
find_nearest_res()
(in
rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
)
fresh_instance()
(in
IfMover
)
fast_forward()
(in
Scorer
)
find_nearest_residue()
(in
rosetta.protocols.protein_interface_design._protocols_protein_interface_design_
)
fresh_instance()
(in
IteratedConvergenceMover
)
fast_forward()
(in
StepWiseResiduePairScreener
)
find_nearest_residue_to_coord()
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
fresh_instance()
(in
JumpOutMover
)
fast_forward()
(in
StepWiseScreener
)
find_neighboring_stubs()
(in
HotspotStubSet
)
fresh_instance()
(in
MCShowMover
)
fast_forward()
(in
StubApplier
)
find_new_jump_residue()
(in
AsymFoldandDockMoveRbJumpMover
)
fresh_instance()
(in
MonteCarloUtil
)
fast_forward()
(in
StubDistanceScreener
)
find_new_symmetric_jump_residues()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
fresh_instance()
(in
MoveMapMover
)
fast_forward()
(in
SugarInstantiator
)
find_non_protein_chunks()
(in
rosetta.protocols.loops._protocols_loops_
)
fresh_instance()
(in
Mover
)
fast_forward()
(in
TagDefinition
)
find_num_scattering_atoms()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
fresh_instance()
(in
MoverApplyingMover
)
fast_forward()
(in
VDW_BinScreener
)
find_optimal_rotation()
(in
PlaidFingerprint
)
fresh_instance()
(in
MoverContainer
)
fast_forward_to_end()
(in
RigidBodyStepWiseSampler
)
find_parallel()
(in
StrandBundleFeatures
)
fresh_instance()
(in
MoverForPoseList
)
fast_forward_to_next_euler_gamma()
(in
RigidBodyStepWiseSampler
)
find_partner()
(in
DNAParameters
)
fresh_instance()
(in
NullMover
)
fast_forward_to_next_euler_gamma()
(in
RigidBodyStepWiseSamplerWithResidueAlternatives
)
find_peptide_attach_pt()
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
fresh_instance()
(in
PDBDumpMover
)
fast_forward_to_next_euler_gamma()
(in
RigidBodyStepWiseSamplerWithResidueList
)
find_pitch()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
fresh_instance()
(in
ProfilerMover
)
fast_forward_to_next_residue()
(in
ResidueAlternativeStepWiseSamplerComb
)
find_residue_max_radii()
(in
rosetta.core.pack._core_pack_
)
fresh_instance()
(in
PyMolMover
)
fast_forward_to_next_residue()
(in
RigidBodyStepWiseSamplerWithResidueAlternatives
)
find_resnum()
(in
ResidueAlternativeStepWiseSamplerComb
)
fresh_instance()
(in
RampingMover
)
FAST_FORWARD_TO_NEXT_RESIDUE_ALTERNATIVE
(in
rosetta.protocols.stepwise.screener
)
find_resource()
(in
LazyResourceManager
)
fresh_instance()
(in
RandomMover
)
FAST_FORWARD_TO_NEXT_RESIDUE_ALTERNATIVE
(in
rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
)
find_resource()
(in
ResourceManager
)
fresh_instance()
(in
RepeatMover
)
FAST_FORWARD_TO_NEXT_RESIDUE_ALTERNATIVE
(in
StepWiseScreenerType
)
find_resource_configuration()
(in
LazyResourceManager
)
fresh_instance()
(in
SequenceMover
)
fast_forward_to_next_residue_pair()
(in
ResidueAlternativeStepWiseSamplerComb
)
find_resource_locator()
(in
LazyResourceManager
)
fresh_instance()
(in
StructureRestrictor
)
fast_forward_to_next_residue_pair()
(in
RigidBodyStepWiseSamplerWithResidueAlternatives
)
find_resource_options()
(in
LazyResourceManager
)
fresh_instance()
(in
TrialMover
)
fast_forward_to_next_residue_pair()
(in
rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
)
find_resource_tag_by_job_tag()
(in
LazyResourceManager
)
fresh_instance()
(in
VectorPoseMover
)
FAST_FORWARD_TO_NEXT_RIGID_BODY
(in
rosetta.protocols.stepwise.screener
)
find_rosettascript_tag()
(in
RosettaScriptsParser
)
fresh_instance()
(in
WhileMover
)
FAST_FORWARD_TO_NEXT_RIGID_BODY
(in
rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
)
find_seqpos_of_saccharides_parent_residue()
(in
rosetta.core.pose.carbohydrates._core_pose_carbohydrates_
)
fresh_instance()
(in
StructAvrgMover
)
FAST_FORWARD_TO_NEXT_RIGID_BODY
(in
StepWiseScreenerType
)
find_sheet()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
fresh_instance()
(in
NcbbDockDesignProtocol
)
fast_forward_to_next_rigid_body()
(in
RigidBodyStepWiseSamplerWithResidueAlternatives
)
find_SilentStructOPs
(in
rosetta.protocols.wum._protocols_wum_
)
fresh_instance()
(in
OopCreatorMover
)
fast_forward_to_next_rigid_body()
(in
RigidBodyStepWiseSamplerWithResidueList
)
find_SilentStructOPsAP
(in
rosetta.protocols.wum._protocols_wum_
)
fresh_instance()
(in
OopDockDesignProtocol
)
fast_forward_to_next_translation()
(in
RigidBodyStepWiseSampler
)
find_SilentStructOPsCAP
(in
rosetta.protocols.wum._protocols_wum_
)
fresh_instance()
(in
CartesianNormalModeMover
)
fast_forward_to_next_translation()
(in
RigidBodyStepWiseSamplerWithResidueAlternatives
)
find_start_of_next_interface_region()
(in
Interface
)
fresh_instance()
(in
NormalModeMinimizer
)
fast_forward_to_next_translation()
(in
RigidBodyStepWiseSamplerWithResidueList
)
find_stop_of_this_interface_region()
(in
Interface
)
fresh_instance()
(in
NormalModeRelaxMover
)
fast_scan()
(in
RNA_LoopCloser
)
FIND_SUGAR_AND_SUITE_FRAGS_I
(in
rosetta.basic
)
fresh_instance()
(in
TorsionNormalModeMover
)
FastaInputter
(in
rosetta.protocols.inputter._protocols_inputter_
)
FIND_SUGAR_AND_SUITE_FRAGS_I
(in
rosetta.basic._basic_
)
fresh_instance()
(in
SetupPoissonBoltzmannPotential
)
FastaInputterAP
(in
rosetta.protocols.inputter._protocols_inputter_
)
FIND_SUGAR_AND_SUITE_FRAGS_I
(in
ProfTag
)
fresh_instance()
(in
AtomicContactCountFilter
)
FastaInputterCAP
(in
rosetta.protocols.inputter._protocols_inputter_
)
FIND_SUGAR_AND_SUITE_FRAGS_II
(in
rosetta.basic
)
fresh_instance()
(in
AverageDegreeFilter
)
FastDensEnergy
(in
rosetta.core.scoring.electron_density._core_scoring_electron_density_
)
FIND_SUGAR_AND_SUITE_FRAGS_II
(in
rosetta.basic._basic_
)
fresh_instance()
(in
BindingStrainFilter
)
FastDensEnergyAP
(in
rosetta.core.scoring.electron_density._core_scoring_electron_density_
)
FIND_SUGAR_AND_SUITE_FRAGS_II
(in
ProfTag
)
fresh_instance()
(in
BoltzmannFilter
)
FastDensEnergyCAP
(in
rosetta.core.scoring.electron_density._core_scoring_electron_density_
)
find_symmetric_basejump_anchor()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
fresh_instance()
(in
ClashWithTargetFilter
)
FastDensEnergyCreator
(in
rosetta.core.scoring.electron_density._core_scoring_electron_density_
)
find_unconnected_residues()
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
fresh_instance()
(in
DesignableResiduesFilter
)
FastDensEnergyCreatorAP
(in
rosetta.core.scoring.electron_density._core_scoring_electron_density_
)
find_weights_file()
(in
rosetta.core.scoring._core_scoring_
)
fresh_instance()
(in
DisulfideFilter
)
FastDensEnergyCreatorCAP
(in
rosetta.core.scoring.electron_density._core_scoring_electron_density_
)
find_zinc_site()
(in
ZincSiteFinder
)
fresh_instance()
(in
FNatFilter
)
FASTER_IG_Repacker
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
findClusters()
(in
CClusterSet
)
fresh_instance()
(in
FilterScanFilter
)
FASTER_IG_RepackerAP
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
findClusters()
(in
PClusterSet
)
fresh_instance()
(in
HbondsToAtomFilter
)
FASTER_IG_RepackerCAP
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
findClusters()
(in
PocketGrid
)
fresh_instance()
(in
HbondsToResidueFilter
)
FASTERAnnealer
(in
rosetta.core.pack.annealer._core_pack_annealer_
)
findClusters()
(in
TargetPocketGrid
)
fresh_instance()
(in
IRmsdFilter
)
FASTERAnnealerAP
(in
rosetta.core.pack.annealer._core_pack_annealer_
)
findClustersByExemplars()
(in
PocketGrid
)
fresh_instance()
(in
InterfaceHolesFilter
)
FASTERAnnealerCAP
(in
rosetta.core.pack.annealer._core_pack_annealer_
)
FindConsensusSequence
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
fresh_instance()
(in
LRmsdFilter
)
FASTEREdge
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
FindConsensusSequenceAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
fresh_instance()
(in
RelativeSegmentFilter
)
FASTEREdgeAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
FindConsensusSequenceCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
fresh_instance()
(in
RmsdFilter
)
FASTEREdgeCAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
FindConsensusSequenceCreator
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
fresh_instance()
(in
RmsdSimpleFilter
)
FASTERInteractionGraph
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
FindConsensusSequenceCreatorAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
fresh_instance()
(in
SSamountFilter
)
FASTERInteractionGraphAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
FindConsensusSequenceCreatorCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
fresh_instance()
(in
SequenceRecoveryFilter
)
FASTERInteractionGraphCAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
findEdgeId()
(in
SequenceCoupling
)
fresh_instance()
(in
SpecificResiduesNearInterfaceFilter
)
FASTERNode
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
findExemplars()
(in
PocketGrid
)
fresh_instance()
(in
StubScoreFilter
)
FASTERNodeAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
findLoopFromDensity()
(in
rosetta.protocols.electron_density._protocols_electron_density_
)
fresh_instance()
(in
StubScoreLoopsFilter
)
FASTERNodeCAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
findLoopFromPatterson()
(in
rosetta.protocols.electron_density._protocols_electron_density_
)
fresh_instance()
(in
Torsion
)
FastForwardToNextResidueAlternative
(in
rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
)
findNeighors()
(in
PDB
)
fresh_instance()
(in
AddChainBreak
)
FastForwardToNextResidueAlternativeAP
(in
rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
)
findPockets()
(in
PocketGrid
)
fresh_instance()
(in
AddSidechainConstraintsToHotspots
)
FastForwardToNextResidueAlternativeCAP
(in
rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
)
FindPossibleAtomTypesForAtom()
(in
PossibleAtomTypesForAtom
)
fresh_instance()
(in
BackrubDDMover
)
FastForwardToNextRigidBody
(in
rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
)
findPSP()
(in
PocketGrid
)
fresh_instance()
(in
BestHotspotCstMover
)
FastForwardToNextRigidBodyAP
(in
rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
)
findRoot()
(in
SmallMol
)
fresh_instance()
(in
BuildAlaPose
)
FastForwardToNextRigidBodyCAP
(in
rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
)
findSampling()
(in
rosetta.core.scoring.electron_density._core_scoring_electron_density_
)
fresh_instance()
(in
DesignMinimizeHbonds
)
FastGapMover
(in
rosetta.protocols.loophash._protocols_loophash_
)
findSampling()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
fresh_instance()
(in
DisulfideMover
)
FastGapMoverAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
findSampling5()
(in
rosetta.core.scoring.electron_density._core_scoring_electron_density_
)
fresh_instance()
(in
DockAndRetrieveSidechains
)
FastGapMoverCAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
findSampling5()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
fresh_instance()
(in
DockWithHotspotMover
)
FastLinearFunc
(in
rosetta.protocols.moves._protocols_moves_
)
findSPS()
(in
PocketGrid
)
fresh_instance()
(in
FavorNativeResiduePreCycle
)
FastLinearFuncAP
(in
rosetta.protocols.moves._protocols_moves_
)
findUU()
(in
rosetta.numeric.model_quality._numeric_model_quality_
)
fresh_instance()
(in
FavorNonNativeResiduePreCycle
)
FastLinearFuncCAP
(in
rosetta.protocols.moves._protocols_moves_
)
finer_sampling_at_chain_closure()
(in
StepWiseRNA_ModelerOptions
)
fresh_instance()
(in
HotspotDisjointedFoldTreeMover
)
FastRelax
(in
rosetta.protocols.relax._protocols_relax_
)
FingerprintBase
(in
rosetta.protocols.pockets._protocols_pockets_
)
fresh_instance()
(in
HotspotHasherMover
)
FastRelaxAP
(in
rosetta.protocols.relax._protocols_relax_
)
FingerprintBaseAP
(in
rosetta.protocols.pockets._protocols_pockets_
)
fresh_instance()
(in
InterfaceRecapitulationMover
)
FastRelaxCAP
(in
rosetta.protocols.relax._protocols_relax_
)
FingerprintBaseCAP
(in
rosetta.protocols.pockets._protocols_pockets_
)
fresh_instance()
(in
LoopFinder
)
FastRelaxCreator
(in
rosetta.protocols.relax._protocols_relax_
)
FingerprintMultifunc
(in
rosetta.protocols.pockets._protocols_pockets_
)
fresh_instance()
(in
LoopLengthChange
)
FastRelaxCreatorAP
(in
rosetta.protocols.relax._protocols_relax_
)
FingerprintMultifuncAP
(in
rosetta.protocols.pockets._protocols_pockets_
)
fresh_instance()
(in
LoopMoverFromCommandLine
)
FastRelaxCreatorCAP
(in
rosetta.protocols.relax._protocols_relax_
)
FingerprintMultifuncCAP
(in
rosetta.protocols.pockets._protocols_pockets_
)
fresh_instance()
(in
LoopOver
)
fastsaxs
(in
ScoreType
)
finish_pose()
(in
SilentStruct
)
fresh_instance()
(in
LoopRemodel
)
fastsaxs
(in
rosetta.core.scoring._core_scoring_
)
FINISHED
(in
IterativeBase
)
fresh_instance()
(in
MapHotspot
)
fastsaxs
(in
rosetta.core.scoring
)
FINISHED
(in
IterationStage
)
fresh_instance()
(in
PatchdockTransform
)
fastsaxs
(in
rosetta
)
finished()
(in
HedgeArchive
)
fresh_instance()
(in
PeptideStapleDesignMover
)
FastSAXSEnergy
(in
rosetta.core.scoring.saxs._core_scoring_saxs_
)
finished()
(in
IterativeAbrelax
)
fresh_instance()
(in
PlaceOnLoop
)
FastSAXSEnergyAP
(in
rosetta.core.scoring.saxs._core_scoring_saxs_
)
finished()
(in
IterativeBase
)
fresh_instance()
(in
PlaceSimultaneouslyMover
)
FastSAXSEnergyCAP
(in
rosetta.core.scoring.saxs._core_scoring_saxs_
)
finished()
(in
IterativeCentroid
)
fresh_instance()
(in
PlaceStubMover
)
FastSAXSEnergyCreator
(in
rosetta.core.scoring.saxs._core_scoring_saxs_
)
finished()
(in
IterativeFullatom
)
fresh_instance()
(in
PlacementAuctionMover
)
FastSAXSEnergyCreatorAP
(in
rosetta.core.scoring.saxs._core_scoring_saxs_
)
finished()
(in
AbstractArchiveBase
)
fresh_instance()
(in
PlacementMinimizationMover
)
FastSAXSEnergyCreatorCAP
(in
rosetta.core.scoring.saxs._core_scoring_saxs_
)
finished()
(in
ArchiveBase
)
fresh_instance()
(in
PrepackMover
)
fastTransAlignPose()
(in
rosetta.protocols.electron_density._protocols_electron_density_
)
finished()
(in
EvaluatedArchive
)
fresh_instance()
(in
ProteinInterfaceMultiStateDesignMover
)
FaSymDockingSlideTogether
(in
rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
)
finished()
(in
NormalizedEvaluatedArchive
)
fresh_instance()
(in
RandomMutation
)
FaSymDockingSlideTogetherAP
(in
rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
)
finished()
(in
VarianceStatisticsArchive
)
fresh_instance()
(in
RepackMinimize
)
FaSymDockingSlideTogetherCAP
(in
rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
)
finished()
(in
SymmetrySlider
)
fresh_instance()
(in
SaveAndRetrieveSidechains
)
FavorNativeResidue
(in
rosetta.protocols.protein_interface_design._protocols_protein_interface_design_
)
finished_simulation()
(in
AsyncMPITemperingBase
)
fresh_instance()
(in
SetAtomTree
)
FavorNativeResidueAP
(in
rosetta.protocols.protein_interface_design._protocols_protein_interface_design_
)
finished_simulation()
(in
FixedTemperatureController
)
fresh_instance()
(in
SetTemperatureFactor
)
FavorNativeResidueCAP
(in
rosetta.protocols.protein_interface_design._protocols_protein_interface_design_
)
finished_simulation()
(in
ParallelTempering
)
fresh_instance()
(in
SetupHotspotConstraintsLoopsMover
)
FavorNativeResiduePreCycle
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
finished_simulation()
(in
SimulatedTempering
)
fresh_instance()
(in
SetupHotspotConstraintsMover
)
FavorNativeResiduePreCycleAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
finished_simulation()
(in
TemperatureController
)
fresh_instance()
(in
ShoveResidueMover
)
FavorNativeResiduePreCycleCAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
finished_simulation()
(in
TemperingBase
)
fresh_instance()
(in
SpinMover
)
FavorNativeResiduePreCycleCreator
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
first
(in
pair_Real_Real
)
fresh_instance()
(in
SubroutineMover
)
FavorNativeResiduePreCycleCreatorAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
first
(in
pair_Real_string
)
fresh_instance()
(in
TaskAwareCsts
)
FavorNativeResiduePreCycleCreatorCAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
first
(in
pair_SSize_SSize
)
fresh_instance()
(in
TopologyBrokerMover
)
FavorNonNativeResidue
(in
rosetta.protocols.protein_interface_design._protocols_protein_interface_design_
)
first
(in
pair_SSize_string
)
fresh_instance()
(in
TryRotamers
)
FavorNonNativeResidueAP
(in
rosetta.protocols.protein_interface_design._protocols_protein_interface_design_
)
first
(in
pair_Size_Real
)
fresh_instance()
(in
VLB
)
FavorNonNativeResidueCAP
(in
rosetta.protocols.protein_interface_design._protocols_protein_interface_design_
)
first
(in
pair_Size_Size
)
fresh_instance()
(in
AutoRBMover
)
FavorNonNativeResiduePreCycle
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
first
(in
pair_Size_SymDof
)
fresh_instance()
(in
FragInsertAndAlignMover
)
FavorNonNativeResiduePreCycleAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
first
(in
pair_Size_string
)
fresh_instance()
(in
GaussianRBSegmentMover
)
FavorNonNativeResiduePreCycleCAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
first
(in
pair_char_pair_Size_Size
)
fresh_instance()
(in
HelicalGaussianMover
)
FavorNonNativeResiduePreCycleCreator
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
first
(in
pair_int_int
)
fresh_instance()
(in
IdealizeHelicesMover
)
FavorNonNativeResiduePreCycleCreatorAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
first
(in
pair_int_string
)
fresh_instance()
(in
MakeStarTopologyMover
)
FavorNonNativeResiduePreCycleCreatorCAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
first
(in
pair_string_Real
)
fresh_instance()
(in
OptimizeThreadingMover
)
FavorSequenceProfile
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
first
(in
pair_string_SSize
)
fresh_instance()
(in
RBSegmentMover
)
FavorSequenceProfileAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
first
(in
pair_string_Size
)
fresh_instance()
(in
RBSegmentRelax
)
FavorSequenceProfileCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
first
(in
pair_string_int
)
fresh_instance()
(in
SequenceShiftMover
)
FavorSequenceProfileCreator
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
first
(in
pair_string_string
)
fresh_instance()
(in
StrandTwistingMover
)
FavorSequenceProfileCreatorAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
First
(in
rosetta.protocols.indexed_structure_store.filters
)
fresh_instance()
(in
AtomCoordinateCstMover
)
FavorSequenceProfileCreatorCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
First
(in
rosetta.protocols.indexed_structure_store.filters._protocols_indexed_structure_store_filters_
)
fresh_instance()
(in
CentroidRelax
)
FavorSymmetricSequence
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
First
(in
LookupMode
)
fresh_instance()
(in
ClassicRelax
)
FavorSymmetricSequenceAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
first()
(in
Hit
)
fresh_instance()
(in
FastRelax
)
FavorSymmetricSequenceCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
first_base_atom()
(in
rosetta.core.chemical.rna._core_chemical_rna_
)
fresh_instance()
(in
LocalRelax
)
FavorSymmetricSequenceCreator
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
first_base_atom_index()
(in
rosetta.core.chemical.rna._core_chemical_rna_
)
fresh_instance()
(in
MiniRelax
)
FavorSymmetricSequenceCreatorAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
first_beta3_aa
(in
AA
)
fresh_instance()
(in
RelaxProtocolBase
)
FavorSymmetricSequenceCreatorCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
first_beta3_aa
(in
rosetta.core.chemical._core_chemical_
)
fresh_instance()
(in
MPFastRelaxMover
)
FBnl_R()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
first_beta3_aa
(in
rosetta.core.chemical
)
fresh_instance()
(in
MembraneCenterPerturbationMover
)
fcen10()
(in
CenListInfo
)
first_beta3_aa
(in
rosetta
)
fresh_instance()
(in
MembraneNormalPerturbationMover
)
fcen12()
(in
CenListInfo
)
first_D_aa
(in
AA
)
fresh_instance()
(in
MovePoseToMembraneCenterMover
)
fcen6()
(in
CenListInfo
)
first_D_aa
(in
rosetta.core.chemical._core_chemical_
)
fresh_instance()
(in
RigidBodyDeterministicSpinMover
)
Fd_like
(in
rosetta.protocols.fldsgn.topology
)
first_D_aa
(in
rosetta.core.chemical
)
fresh_instance()
(in
RigidBodyDofPerturbMover
)
Fd_like
(in
rosetta.protocols.fldsgn.topology._protocols_fldsgn_topology_
)
first_D_aa
(in
rosetta
)
fresh_instance()
(in
RigidBodyDofRandomTransMover
)
Fd_like
(in
SheetFoldType
)
first_DNA_aa
(in
AA
)
fresh_instance()
(in
RigidBodyDofRandomizeMover
)
FdF()
(in
BicubicSpline
)
first_DNA_aa
(in
rosetta.core.chemical._core_chemical_
)
fresh_instance()
(in
RigidBodyDofSeqPerturbMover
)
FdF()
(in
CubicSpline
)
first_DNA_aa
(in
rosetta.core.chemical
)
fresh_instance()
(in
RigidBodyDofSeqRandomizeMover
)
features
(in
rosetta.protocols.comparative_modeling
)
first_DNA_aa
(in
rosetta
)
fresh_instance()
(in
RigidBodyDofSeqTransMover
)
features
(in
rosetta.protocols
)
FIRST_LINK_TYPE
(in
rosetta.core.scoring.carbohydrates
)
fresh_instance()
(in
RigidBodyDofTransMover
)
features_reporter_dependencies()
(in
AntibodyFeatures
)
FIRST_LINK_TYPE
(in
rosetta.core.scoring.carbohydrates._core_scoring_carbohydrates_
)
fresh_instance()
(in
RigidBodyMotionMover
)
features_reporter_dependencies()
(in
CDRClusterFeatures
)
FIRST_LINK_TYPE
(in
LinkageType
)
fresh_instance()
(in
RigidBodyMover
)
features_reporter_dependencies()
(in
AtomAtomPairFeatures
)
first_pass_ala_scan()
(in
RotamerBoltzmannWeight
)
fresh_instance()
(in
RigidBodyPerturbMover
)
features_reporter_dependencies()
(in
AtomInResidueAtomInResiduePairFeatures
)
FIRST_PROPERTY
(in
rosetta
)
fresh_instance()
(in
RigidBodyPerturbNoCenterMover
)
features_reporter_dependencies()
(in
AtomTypesFeatures
)
FIRST_PROPERTY
(in
rosetta.core.chemical
)
fresh_instance()
(in
RigidBodyPerturbRandomJumpMover
)
features_reporter_dependencies()
(in
BatchFeatures
)
FIRST_PROPERTY
(in
rosetta.core.chemical._core_chemical_
)
fresh_instance()
(in
RigidBodyRandomizeMover
)
features_reporter_dependencies()
(in
BetaTurnDetectionFeatures
)
FIRST_PROPERTY
(in
ResidueProperty
)
fresh_instance()
(in
RigidBodySpinMover
)
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MinimizationGraph
)
fresh_instance()
(in
ClassicFragmentMover
)
FiberDiffractionOptionsAP
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
fixed_energy_terms()
(in
OptEData
)
fresh_instance()
(in
ClearConstraintsMover
)
FiberDiffractionOptionsCAP
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
fixed_res()
(in
StepWiseBasicWorkingParameters
)
fresh_instance()
(in
CombinePoseMover
)
FiberDiffractionOptionsCreator
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
FixedBBEdge
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
fresh_instance()
(in
ConsensusDesignMover
)
FiberDiffractionOptionsCreatorAP
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
FixedBBEdgeAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
fresh_instance()
(in
ConstrainToIdealMover
)
FiberDiffractionOptionsCreatorCAP
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
FixedBBEdgeCAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
fresh_instance()
(in
ConstraintSetMover
)
fibril
(in
rosetta.protocols
)
FixedBBInteractionGraph
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
fresh_instance()
(in
ContingentAcceptMover
)
Field
(in
rosetta.core.io.pdb._core_io_pdb_
)
FixedBBInteractionGraphAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
fresh_instance()
(in
CopyDofMover
)
FieldAP
(in
rosetta.core.io.pdb._core_io_pdb_
)
FixedBBInteractionGraphCAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
fresh_instance()
(in
CoupledMover
)
FieldCAP
(in
rosetta.core.io.pdb._core_io_pdb_
)
FixedBBNode
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
fresh_instance()
(in
CutChainMover
)
figure_out_all_possible_moves()
(in
StepWiseMoveSelector
)
FixedBBNodeAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
fresh_instance()
(in
CyclizationMover
)
figure_out_base_pair_partner()
(in
rosetta.protocols.farna._protocols_farna_
)
FixedBBNodeCAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
fresh_instance()
(in
DME_FilterMover
)
figure_out_chain_numbers_from_full_model_info()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
FixedOffsetPivots
(in
rosetta.protocols.kinematic_closure.pivot_pickers._protocols_kinematic_closure_pivot_pickers_
)
fresh_instance()
(in
DeleteChainsMover
)
figure_out_chain_numbers_from_full_model_info_const()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
FixedOffsetPivotsAP
(in
rosetta.protocols.kinematic_closure.pivot_pickers._protocols_kinematic_closure_pivot_pickers_
)
fresh_instance()
(in
DesignRepackMover
)
figure_out_conventional_chains_from_full_model_info()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
FixedOffsetPivotsCAP
(in
rosetta.protocols.kinematic_closure.pivot_pickers._protocols_kinematic_closure_pivot_pickers_
)
fresh_instance()
(in
DisulfideInsertionMover
)
figure_out_dock_domain_map()
(in
rosetta.protocols.stepwise.setup._protocols_stepwise_setup_
)
FixedPivots
(in
rosetta.protocols.kinematic_closure.pivot_pickers._protocols_kinematic_closure_pivot_pickers_
)
fresh_instance()
(in
DumpPdb
)
figure_out_dock_domain_map_from_full_model_info_const()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
FixedPivotsAP
(in
rosetta.protocols.kinematic_closure.pivot_pickers._protocols_kinematic_closure_pivot_pickers_
)
fresh_instance()
(in
EnergyCutRotamerTrialsMinMover
)
figure_out_dofs()
(in
CopyDofs
)
FixedPivotsCAP
(in
rosetta.protocols.kinematic_closure.pivot_pickers._protocols_kinematic_closure_pivot_pickers_
)
fresh_instance()
(in
EnergyCutRotamerTrialsMover
)
figure_out_fixed_domain_map()
(in
rosetta.protocols.stepwise.setup._protocols_stepwise_setup_
)
FixedTemperatureController
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
fresh_instance()
(in
ExtendedPoseMover
)
figure_out_motif_mode()
(in
rosetta.protocols.stepwise.setup._protocols_stepwise_setup_
)
FixedTemperatureControllerAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
fresh_instance()
(in
FavorSequenceProfile
)
figure_out_moving_chain_break_res()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
FixedTemperatureControllerCAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
fresh_instance()
(in
FavorSymmetricSequence
)
figure_out_moving_chain_breaks()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
fixEigenvector()
(in
rosetta.numeric.model_quality._numeric_model_quality_
)
fresh_instance()
(in
FindConsensusSequence
)
figure_out_moving_cutpoints_closed()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
fixResidue()
(in
ResiduePairJumpSingle
)
fresh_instance()
(in
ForceDisulfidesMover
)
figure_out_moving_cutpoints_closed_from_moving_res()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
FixTemplateJumpSetup
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
fresh_instance()
(in
GenericMonteCarloMover
)
figure_out_moving_partition_res()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
FixTemplateJumpSetupAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
fresh_instance()
(in
GreenPacker
)
figure_out_moving_partition_res()
(in
rosetta.protocols.toolbox.rigid_body._protocols_toolbox_rigid_body_
)
FixTemplateJumpSetupCAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
fresh_instance()
(in
LoadPDBMover
)
figure_out_moving_partition_res_for_jump()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
fixup_patches()
(in
rosetta.core.chemical._core_chemical_
)
fresh_instance()
(in
LoadUnboundRotMover
)
figure_out_moving_partition_res_for_suite()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
fixup_rinfo_based_on_residue_type_set()
(in
rosetta.core.io.pdb._core_io_pdb_
)
fresh_instance()
(in
MSDMover
)
figure_out_moving_rna_chain_breaks()
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
flag_file()
(in
Batch
)
fresh_instance()
(in
MakePolyXMover
)
figure_out_pose_domain_map()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
flank_residue_min()
(in
LoopMover_Refine_CCD
)
fresh_instance()
(in
MembraneTopology
)
figure_out_pose_domain_map_const()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
flat_size()
(in
FrameList
)
fresh_instance()
(in
MinMover
)
figure_out_protein_modeling_info()
(in
rosetta.protocols.stepwise.modeler.protein._protocols_stepwise_modeler_protein_
)
FlatHarmonicFunc
(in
rosetta.core.scoring.func._core_scoring_func_
)
fresh_instance()
(in
MinPackMover
)
figure_out_reasonable_rna_fold_tree()
(in
rosetta.core.pose.rna._core_pose_rna_
)
FlatHarmonicFuncAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
fresh_instance()
(in
MissingDensityToJumpMover
)
figure_out_rebuild_bulge_mode()
(in
rosetta.protocols.stepwise.modeler.working_parameters._protocols_stepwise_modeler_working_parameters_
)
FlatHarmonicFuncCAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
fresh_instance()
(in
ModifyVariantTypeMover
)
figure_out_reference_res_for_jump()
(in
rosetta.protocols.toolbox.rigid_body._protocols_toolbox_rigid_body_
)
flatten_list()
(in
rosetta.core.fragment._core_fragment_
)
fresh_instance()
(in
MonteCarloRecover
)
figure_out_reference_res_for_suite()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
Flavodoxin
(in
rosetta.protocols.fldsgn.topology
)
fresh_instance()
(in
MonteCarloReset
)
figure_out_repackable_residues()
(in
rosetta.core.pack._core_pack_
)
Flavodoxin
(in
rosetta.protocols.fldsgn.topology._protocols_fldsgn_topology_
)
fresh_instance()
(in
MonteCarloTest
)
figure_out_residue_numbers_from_line()
(in
SilentStruct
)
Flavodoxin
(in
SheetFoldType
)
fresh_instance()
(in
MutateResidue
)
figure_out_root_and_moving_partition_res()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
fldsgn
(in
rosetta.protocols
)
fresh_instance()
(in
O2M_MutateMover
)
figure_out_root_partition_res()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
FlexbbEdge
(in
rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
)
fresh_instance()
(in
PDBReloadMover
)
figure_out_sample_both_sugar_base_rotamer()
(in
rosetta.protocols.stepwise.modeler.working_parameters._protocols_stepwise_modeler_working_parameters_
)
FlexbbEdgeAP
(in
rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
)
fresh_instance()
(in
PSSM2BfactorMover
)
figure_out_sample_res()
(in
rosetta.protocols.stepwise.setup._protocols_stepwise_setup_
)
FlexbbEdgeCAP
(in
rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
)
fresh_instance()
(in
PackRotamersMover
)
figure_out_secstruct()
(in
rosetta.protocols.farna._protocols_farna_
)
FlexbbIGFactory
(in
rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
)
fresh_instance()
(in
PackRotamersMoverLazy
)
figure_out_stepwise_movemap()
(in
rosetta.protocols.stepwise.modeler.movemap._protocols_stepwise_modeler_movemap_
)
FlexbbIGFactoryAP
(in
rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
)
fresh_instance()
(in
PeptideStapleMover
)
figure_out_working_interface_res()
(in
rosetta.protocols.stepwise.modeler.packer._protocols_stepwise_modeler_packer_
)
FlexbbIGFactoryCAP
(in
rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
)
fresh_instance()
(in
PeriodicBoxMover
)
figure_out_working_res()
(in
rosetta.protocols.stepwise.setup._protocols_stepwise_setup_
)
FlexbbInteractionGraph
(in
rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
)
fresh_instance()
(in
ProlineFixMover
)
fij()
(in
RDC
)
FlexbbInteractionGraphAP
(in
rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
)
fresh_instance()
(in
RandomOmegaFlipMover
)
file
(in
rosetta.utility
)
FlexbbInteractionGraphCAP
(in
rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
)
fresh_instance()
(in
RandomTorsionMover
)
file()
(in
PDBOutput
)
FlexbbNode
(in
rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
)
fresh_instance()
(in
RepackSidechainsMover
)
file()
(in
DatabaseJobOutputter
)
FlexbbNodeAP
(in
rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
)
fresh_instance()
(in
RepeatPropagationMover
)
file()
(in
AtomTreeDiffJobOutputter
)
FlexbbNodeCAP
(in
rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
)
fresh_instance()
(in
ReportEffectivePKA
)
file()
(in
FileJobOutputter
)
FlexbbRotamerSet
(in
rosetta.protocols.flexpack.rotamer_set._protocols_flexpack_rotamer_set_
)
fresh_instance()
(in
RepulsiveOnlyMover
)
file()
(in
JobOutputter
)
FlexbbRotamerSetAP
(in
rosetta.protocols.flexpack.rotamer_set._protocols_flexpack_rotamer_set_
)
fresh_instance()
(in
ResetBaselineMover
)
file()
(in
NoOutputJobOutputter
)
FlexbbRotamerSetCAP
(in
rosetta.protocols.flexpack.rotamer_set._protocols_flexpack_rotamer_set_
)
fresh_instance()
(in
ResidueTypeConstraintMover
)
file()
(in
PDBJobOutputter
)
FlexbbRotamerSets
(in
rosetta.protocols.flexpack.rotamer_set._protocols_flexpack_rotamer_set_
)
fresh_instance()
(in
ReturnSidechainMover
)
file()
(in
ScoreOnlyJobOutputter
)
FlexbbRotamerSetsAP
(in
rosetta.protocols.flexpack.rotamer_set._protocols_flexpack_rotamer_set_
)
fresh_instance()
(in
RingConformationMover
)
file()
(in
SilentFileJobOutputter
)
FlexbbRotamerSetsCAP
(in
rosetta.protocols.flexpack.rotamer_set._protocols_flexpack_rotamer_set_
)
fresh_instance()
(in
RotamerTrialsMinMover
)
file_basename()
(in
rosetta.utility._utility_
)
FlexbbSimAnnealer
(in
rosetta.protocols.flexpack.annealer._protocols_flexpack_annealer_
)
fresh_instance()
(in
RotamerTrialsMover
)
file_basename()
(in
rosetta.utility.file._utility_file_
)
FlexbbSimAnnealerAP
(in
rosetta.protocols.flexpack.annealer._protocols_flexpack_annealer_
)
fresh_instance()
(in
RotamerizeMover
)
file_contents()
(in
rosetta.utility._utility_
)
FlexbbSimAnnealerCAP
(in
rosetta.protocols.flexpack.annealer._protocols_flexpack_annealer_
)
fresh_instance()
(in
SaneMinMover
)
file_data()
(in
PDBSilentStruct
)
FlexbbSparseMatrixIndex
(in
rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
)
fresh_instance()
(in
ScoreMover
)
file_delete()
(in
rosetta.utility.file._utility_file_
)
FlexbbSparseMatrixIndexAP
(in
rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
)
fresh_instance()
(in
SequenceProfileMover
)
file_exists()
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
FlexbbSparseMatrixIndexCAP
(in
rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
)
fresh_instance()
(in
SetReturningPackRotamersMover
)
file_exists()
(in
Inline_File_Provider
)
flexpack
(in
rosetta.protocols
)
fresh_instance()
(in
SetTorsion
)
file_exists()
(in
rosetta.utility.file._utility_file_
)
flexpack_neighbor_graph()
(in
FlexbbRotamerSets
)
fresh_instance()
(in
ShakeStructureMover
)
file_extension()
(in
rosetta.utility.file._utility_file_
)
FlexPacker
(in
rosetta.protocols.flexpack._protocols_flexpack_
)
fresh_instance()
(in
ShearMover
)
file_full_path()
(in
rosetta.protocols.toolbox._protocols_toolbox_
)
FlexPackerAP
(in
rosetta.protocols.flexpack._protocols_flexpack_
)
fresh_instance()
(in
ShortBackrubMover
)
file_inputs_for_job()
(in
DynamicAggregateFunction
)
FlexPackerCAP
(in
rosetta.protocols.flexpack._protocols_flexpack_
)
fresh_instance()
(in
SmallMover
)
file_is_atom_tree_diff()
(in
rosetta.core.import_pose.atom_tree_diffs._core_import_pose_atom_tree_diffs_
)
flexpep_docking
(in
rosetta.protocols
)
fresh_instance()
(in
SuperimposeMover
)
file_name()
(in
MetricRecorder
)
FlexPepDockingAbInitio
(in
rosetta.protocols.flexpep_docking._protocols_flexpep_docking_
)
fresh_instance()
(in
SwitchChainOrderMover
)
file_name()
(in
TrajectoryRecorder
)
FlexPepDockingAbInitioAP
(in
rosetta.protocols.flexpep_docking._protocols_flexpep_docking_
)
fresh_instance()
(in
SwitchResidueTypeSetMover
)
file_names()
(in
FileRemoveFilter
)
FlexPepDockingAbInitioCAP
(in
rosetta.protocols.flexpep_docking._protocols_flexpep_docking_
)
fresh_instance()
(in
TailsScoreMover
)
file_read()
(in
EnzdesLoopsFile
)
FlexPepDockingFlags
(in
rosetta.protocols.flexpep_docking._protocols_flexpep_docking_
)
fresh_instance()
(in
TaskAwareMinMover
)
file_reading_token()
(in
Loops
)
FlexPepDockingFlagsAP
(in
rosetta.protocols.flexpep_docking._protocols_flexpep_docking_
)
fresh_instance()
(in
TorsionDOFMover
)
file_size()
(in
rosetta.utility.file._utility_file_
)
FlexPepDockingFlagsCAP
(in
rosetta.protocols.flexpep_docking._protocols_flexpep_docking_
)
fresh_instance()
(in
TorsionSetMover
)
FileBuffer
(in
rosetta.protocols.checkpoint._protocols_checkpoint_
)
FlexPepDockingLowRes
(in
rosetta.protocols.flexpep_docking._protocols_flexpep_docking_
)
fresh_instance()
(in
Tumble
)
FileBufferAP
(in
rosetta.protocols.checkpoint._protocols_checkpoint_
)
FlexPepDockingLowResAP
(in
rosetta.protocols.flexpep_docking._protocols_flexpep_docking_
)
fresh_instance()
(in
UniformRotationMover
)
FileBufferCAP
(in
rosetta.protocols.checkpoint._protocols_checkpoint_
)
FlexPepDockingLowResCAP
(in
rosetta.protocols.flexpep_docking._protocols_flexpep_docking_
)
fresh_instance()
(in
UniformTranslationMover
)
FileData
(in
rosetta.core.io.pdb._core_io_pdb_
)
FlexPepDockingPoseMetrics
(in
rosetta.protocols.flexpep_docking._protocols_flexpep_docking_
)
fresh_instance()
(in
VirtualRootMover
)
FileDataAP
(in
rosetta.core.io.pdb._core_io_pdb_
)
FlexPepDockingPoseMetricsAP
(in
rosetta.protocols.flexpep_docking._protocols_flexpep_docking_
)
fresh_instance()
(in
ddG
)
FileDataCAP
(in
rosetta.core.io.pdb._core_io_pdb_
)
FlexPepDockingPoseMetricsCAP
(in
rosetta.protocols.flexpep_docking._protocols_flexpep_docking_
)
fresh_instance()
(in
AsymFoldandDockMoveRbJumpMover
)
FileDataOptions
(in
rosetta.core.io.pdb._core_io_pdb_
)
FlexPepDockingProtocol
(in
rosetta.protocols.flexpep_docking._protocols_flexpep_docking_
)
fresh_instance()
(in
AsymFoldandDockRbTrialMover
)
FileDataOptionsAP
(in
rosetta.core.io.pdb._core_io_pdb_
)
FlexPepDockingProtocolAP
(in
rosetta.protocols.flexpep_docking._protocols_flexpep_docking_
)
fresh_instance()
(in
InitializeByBins
)
FileDataOptionsCAP
(in
rosetta.core.io.pdb._core_io_pdb_
)
FlexPepDockingProtocolCAP
(in
rosetta.protocols.flexpep_docking._protocols_flexpep_docking_
)
fresh_instance()
(in
PerturbByBins
)
FileExistFilter
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
FlexPepDockingProtocolCreator
(in
rosetta.protocols.flexpep_docking._protocols_flexpep_docking_
)
fresh_instance()
(in
ChiralMover
)
FileExistFilterAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
FlexPepDockingProtocolCreatorAP
(in
rosetta.protocols.flexpep_docking._protocols_flexpep_docking_
)
fresh_instance()
(in
HbsPatcher
)
FileExistFilterCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
FlexPepDockingProtocolCreatorCAP
(in
rosetta.protocols.flexpep_docking._protocols_flexpep_docking_
)
fresh_instance()
(in
OopDPuckMinusMover
)
FileExistFilterCreator
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
flexseg_members()
(in
FlexbbInteractionGraph
)
fresh_instance()
(in
OopDPuckPlusMover
)
FileExistFilterCreatorAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
flexsegid_for_moltenres()
(in
FlexbbRotamerSets
)
fresh_instance()
(in
OopMover
)
FileExistFilterCreatorCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
flexsegid_for_res()
(in
FlexbbRotamerSets
)
fresh_instance()
(in
OopPatcher
)
FileJobOutputter
(in
rosetta.protocols.jd2._protocols_jd2_
)
flexsegment_size()
(in
FlexbbRotamerSets
)
fresh_instance()
(in
OopPuckMinusMover
)
FileJobOutputterAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
flexsegment_start_moltenresid()
(in
FlexbbRotamerSets
)
fresh_instance()
(in
OopPuckPlusMover
)
FileJobOutputterCAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
flexsegment_start_resid()
(in
FlexbbRotamerSets
)
fresh_instance()
(in
OopRandomPuckMover
)
FileListResourceLocator
(in
rosetta.basic.resource_manager.locator._basic_resource_manager_locator_
)
flexsegment_stop_moltenresid()
(in
FlexbbRotamerSets
)
fresh_instance()
(in
OopRandomSmallMover
)
FileListResourceLocatorAP
(in
rosetta.basic.resource_manager.locator._basic_resource_manager_locator_
)
flexsegment_stop_resid()
(in
FlexbbRotamerSets
)
fresh_instance()
(in
RationalMonteCarlo
)
FileListResourceLocatorCAP
(in
rosetta.basic.resource_manager.locator._basic_resource_manager_locator_
)
flip_atom_xyz()
(in
rosetta.core.io.pdb._core_io_pdb_
)
fresh_instance()
(in
JumpRotamerSidechainMover
)
FileListResourceLocatorCreator
(in
rosetta.basic.resource_manager.locator._basic_resource_manager_locator_
)
FLIP_CHIRALITY
(in
rosetta.protocols.simple_moves.chiral
)
fresh_instance()
(in
PerturbChiSidechainMover
)
FileListResourceLocatorCreatorAP
(in
rosetta.basic.resource_manager.locator._basic_resource_manager_locator_
)
FLIP_CHIRALITY
(in
Chirality
)
fresh_instance()
(in
PerturbRotamerSidechainMover
)
FileListResourceLocatorCreatorCAP
(in
rosetta.basic.resource_manager.locator._basic_resource_manager_locator_
)
FLIP_CHIRALITY
(in
rosetta.protocols.simple_moves.chiral._protocols_simple_moves_chiral_
)
fresh_instance()
(in
SetChiMover
)
FileName
(in
rosetta.utility.file._utility_file_
)
flip_HNQ()
(in
ResidueLevelTask
)
fresh_instance()
(in
SidechainMCMover
)
filename()
(in
DisulfideFile
)
flip_HNQ()
(in
ResidueLevelTask_
)
fresh_instance()
(in
SidechainMover
)
filename()
(in
SilentFileData
)
flip_HNQ()
(in
OptH
)
fresh_instance()
(in
SidechainMoverBase
)
filename()
(in
ReadResfile
)
flip_upstream_downstream_samples()
(in
ExternalGeomSampler
)
fresh_instance()
(in
DetectSymmetry
)
filename()
(in
HierarchicalLevel
)
FlipMover
(in
rosetta.protocols.membrane._protocols_membrane_
)
fresh_instance()
(in
ExtractAsymmetricPoseMover
)
filename()
(in
PDBOutput
)
FlipMoverAP
(in
rosetta.protocols.membrane._protocols_membrane_
)
fresh_instance()
(in
ExtractAsymmetricUnitMover
)
filename()
(in
DatabaseJobOutputter
)
FlipMoverCAP
(in
rosetta.protocols.membrane._protocols_membrane_
)
fresh_instance()
(in
FaSymDockingSlideTogether
)
filename()
(in
AtomTreeDiffJobOutputter
)
FlipMoverCreator
(in
rosetta.protocols.membrane._protocols_membrane_
)
fresh_instance()
(in
SetupForSymmetryMover
)
filename()
(in
FileJobOutputter
)
FlipMoverCreatorAP
(in
rosetta.protocols.membrane._protocols_membrane_
)
fresh_instance()
(in
SetupNCSMover
)
filename()
(in
JobOutputter
)
FlipMoverCreatorCAP
(in
rosetta.protocols.membrane._protocols_membrane_
)
fresh_instance()
(in
SymDockingInitialPerturbation
)
filename()
(in
NoOutputJobOutputter
)
float4
(in
rosetta.basic.gpu._basic_gpu_
)
fresh_instance()
(in
SymDockingSlideIntoContact
)
filename()
(in
PDBJobOutputter
)
float4AP
(in
rosetta.basic.gpu._basic_gpu_
)
fresh_instance()
(in
SymEnergyCutRotamerTrialsMover
)
filename()
(in
ScoreOnlyJobOutputter
)
float4CAP
(in
rosetta.basic.gpu._basic_gpu_
)
fresh_instance()
(in
SymMinMover
)
filename()
(in
SilentFileJobOutputter
)
floating_base()
(in
StepWiseWorkingParameters
)
fresh_instance()
(in
SymPackRotamersMover
)
filename()
(in
SingleFileBuffer
)
floating_base_anchor_res()
(in
StepWiseWorkingParameters
)
fresh_instance()
(in
SymRotamerTrialsMover
)
filename()
(in
FileExistFilter
)
FLOATING_POINT_CLOUD_INFO
(in
Enum
)
fresh_instance()
(in
SymShakeStructureMover
)
filename()
(in
SSMotifFinder
)
FLOATING_POINT_CLOUD_INFO
(in
CacheableDataType
)
fresh_instance()
(in
SymmetricRMSMover
)
filename()
(in
LoadPDBMover
)
flood_fill3D()
(in
rosetta.protocols.sic_dock._protocols_sic_dock_
)
fresh_instance()
(in
TaskAwareSymMinMover
)
filename()
(in
rosetta.utility._utility_
)
floppy_tail
(in
rosetta.protocols
)
fresh_instance()
(in
StepWiseProteinMinimizer
)
FileNameAP
(in
rosetta.utility.file._utility_file_
)
FloppyTailMover
(in
rosetta.protocols.floppy_tail._protocols_floppy_tail_
)
fresh_instance()
(in
StepWiseProteinPoseSetup
)
FileNameCAP
(in
rosetta.utility.file._utility_file_
)
FloppyTailMoverAP
(in
rosetta.protocols.floppy_tail._protocols_floppy_tail_
)
fresh_instance()
(in
StepWiseRNA_PoseSetup
)
filenames()
(in
LazySilentFilePoseInputStream
)
FloppyTailMoverCAP
(in
rosetta.protocols.floppy_tail._protocols_floppy_tail_
)
fresh_instance()
(in
StepWiseConnectionSampler
)
filenames()
(in
SilentFilePoseInputStream
)
FLORECENCE_TRANSFER
(in
ExperimentalTechnique
)
fresh_instance()
(in
StepWiseMinimizer
)
filenames()
(in
StemFinder
)
FLORECENCE_TRANSFER
(in
HeaderInformation
)
fresh_instance()
(in
StepWiseModeler
)
FileRemoveFilter
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
flush()
(in
Emitter
)
fresh_instance()
(in
SideChainCopier
)
FileRemoveFilterAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
flush()
(in
PDBOutput
)
fresh_instance()
(in
StepWisePacker
)
FileRemoveFilterCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
flush()
(in
DatabaseJobOutputter
)
fresh_instance()
(in
PolarHydrogenPacker
)
FileRemoveFilterCreator
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
flush()
(in
AtomTreeDiffJobOutputter
)
fresh_instance()
(in
PrecomputedLibraryMover
)
FileRemoveFilterCreatorAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
flush()
(in
FileJobOutputter
)
fresh_instance()
(in
StepWiseProteinBackboneSampler
)
FileRemoveFilterCreatorCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
flush()
(in
JobOutputter
)
fresh_instance()
(in
StepWiseProteinCCD_Closer
)
FileStream
(in
rosetta.basic.resource_manager.locator._basic_resource_manager_locator_
)
flush()
(in
NoOutputJobOutputter
)
fresh_instance()
(in
StepWiseProteinCCD_MultiPoseCloser
)
FileStreamAP
(in
rosetta.basic.resource_manager.locator._basic_resource_manager_locator_
)
flush()
(in
PDBJobOutputter
)
fresh_instance()
(in
StepWiseProteinKIC_LoopBridger
)
FileStreamCAP
(in
rosetta.basic.resource_manager.locator._basic_resource_manager_locator_
)
flush()
(in
ScoreOnlyJobOutputter
)
fresh_instance()
(in
BulgeApplyMover
)
FileSystemJobDistributor
(in
rosetta.protocols.jd2._protocols_jd2_
)
flush()
(in
SilentFileJobOutputter
)
fresh_instance()
(in
BulgeUnApplyMover
)
FileSystemJobDistributorAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
flush()
(in
SingleFileBuffer
)
fresh_instance()
(in
RNA_ChainClosureChecker
)
FileSystemJobDistributorCAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
flush_all_channels()
(in
Tracer
)
fresh_instance()
(in
RNA_HelixAssembler
)
FileSystemResourceLocator
(in
rosetta.basic.resource_manager.locator._basic_resource_manager_locator_
)
flush_all_tracers()
(in
Tracer
)
fresh_instance()
(in
O2PrimePacker
)
FileSystemResourceLocatorAP
(in
rosetta.basic.resource_manager.locator._basic_resource_manager_locator_
)
flush_checkpoints()
(in
CheckPointer
)
fresh_instance()
(in
MultiPhosphateSampler
)
FileSystemResourceLocatorCAP
(in
rosetta.basic.resource_manager.locator._basic_resource_manager_locator_
)
flxbb
(in
rosetta.protocols
)
fresh_instance()
(in
PhosphateMover
)
FileSystemResourceLocatorCreator
(in
rosetta.basic.resource_manager.locator._basic_resource_manager_locator_
)
FlxbbDesign
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
fresh_instance()
(in
SugarInstantiateMover
)
FileSystemResourceLocatorCreatorAP
(in
rosetta.basic.resource_manager.locator._basic_resource_manager_locator_
)
FlxbbDesign_main()
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
fresh_instance()
(in
SugarVirtualizeMover
)
FileSystemResourceLocatorCreatorCAP
(in
rosetta.basic.resource_manager.locator._basic_resource_manager_locator_
)
FlxbbDesignAP
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
fresh_instance()
(in
VirtualSugarJustInTimeInstantiator
)
fill()
(in
StringResourceStream
)
FlxbbDesignCAP
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
fresh_instance()
(in
VirtualSugarSampler
)
fill()
(in
AtomID_Map_T_bool_T
)
FlxbbDesignCreator
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
fresh_instance()
(in
VirtualSugarSamplerFromStringList
)
fill()
(in
AtomID_Map_T_core_id_AtomID_T
)
FlxbbDesignCreatorAP
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
fresh_instance()
(in
StepWiseMonteCarlo
)
fill()
(in
AtomID_Map_T_double_T
)
FlxbbDesignCreatorCAP
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
fresh_instance()
(in
AddMover
)
fill()
(in
AtomID_Map_T_numeric_xyzVector_T_double_T__T
)
FlxbbDesignPack
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
fresh_instance()
(in
AddOrDeleteMover
)
fill()
(in
NamedAtomID_Map_T_core_id_NamedAtomID_T
)
FlxbbDesignPackAP
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
fresh_instance()
(in
DeleteMover
)
fill()
(in
PDBPoseMap
)
FlxbbDesignPackCAP
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
fresh_instance()
(in
FromScratchMover
)
fill()
(in
HotspotStubSet
)
fname()
(in
ResidueIndexDescriptionFromFile
)
fresh_instance()
(in
ResampleMover
)
fill_A_line()
(in
rosetta.protocols.scoring.methods.pcs._protocols_scoring_methods_pcs_
)
fname()
(in
AddChainMover
)
fresh_instance()
(in
StepWiseMasterMover
)
fill_A_line()
(in
rosetta.protocols.scoring.methods.pcsTs1._protocols_scoring_methods_pcsTs1_
)
FNatFilter
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
fresh_instance()
(in
RNA_AddDeleteMonteCarlo
)
fill_A_line()
(in
rosetta.protocols.scoring.methods.pcsTs2._protocols_scoring_methods_pcsTs2_
)
FNatFilterAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
fresh_instance()
(in
RNA_O2PrimeMover
)
fill_A_line()
(in
rosetta.protocols.scoring.methods.pcsTs3._protocols_scoring_methods_pcsTs3_
)
FNatFilterCAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
fresh_instance()
(in
RNA_TorsionMover
)
fill_A_line()
(in
rosetta.protocols.scoring.methods.pcsTs4._protocols_scoring_methods_pcsTs4_
)
FNatFilterCreator
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
fresh_instance()
(in
JumpStepWiseSampler
)
fill_A_line_fast()
(in
rosetta.protocols.scoring.methods.pcs2._protocols_scoring_methods_pcs2_
)
FNatFilterCreatorAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
fresh_instance()
(in
MC_Comb
)
fill_A_line_slow()
(in
rosetta.protocols.scoring.methods.pcs2._protocols_scoring_methods_pcs2_
)
FNatFilterCreatorCAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
fresh_instance()
(in
MC_OneTorsion
)
fill_by_crossover()
(in
GeneticAlgorithm
)
fobjnames()
(in
MultiObjective
)
fresh_instance()
(in
NoOpStepWiseSampler
)
fill_by_crossover()
(in
GeneticAlgorithmBase
)
focused_edge()
(in
Graph
)
fresh_instance()
(in
StepWiseSamplerAny
)
fill_by_mutation()
(in
GeneticAlgorithm
)
fold()
(in
AbrelaxApplication
)
fresh_instance()
(in
StepWiseSamplerComb
)
fill_by_mutation()
(in
GeneticAlgorithmBase
)
fold_in_rb_deltas()
(in
Jump
)
fresh_instance()
(in
StepWiseSamplerOneTorsion
)
fill_CA_coords()
(in
rosetta.protocols.toolbox._protocols_toolbox_
)
fold_in_rb_deltas()
(in
RT
)
fresh_instance()
(in
StepWiseSamplerOneValue
)
fill_compound_records()
(in
HeaderInformation
)
fold_tree()
(in
Conformation
)
fresh_instance()
(in
StepWiseSamplerOneValueComb
)
fill_contacts()
(in
ContactMap
)
fold_tree()
(in
SymmetricConformation
)
fresh_instance()
(in
StepWiseSamplerSized
)
fill_data()
(in
SasaCalc
)
fold_tree()
(in
BinarySilentStruct
)
fresh_instance()
(in
StepWiseSamplerSizedAny
)
fill_data_from_features()
(in
RDAT
)
fold_tree()
(in
RNA_SilentStruct
)
fresh_instance()
(in
StepWiseSamplerSizedComb
)
fill_designable_set()
(in
SequenceComparison
)
fold_tree()
(in
RigidBodySilentStruct
)
fresh_instance()
(in
CopyDofStepWiseSampler
)
fill_energy_map()
(in
EnergyEdge
)
fold_tree()
(in
ScoreJumpFileSilentStruct
)
fresh_instance()
(in
ResidueAlternativeStepWiseSampler
)
fill_espGrid_values()
(in
ElectrostaticpotentialGrid
)
fold_tree()
(in
MiniPose
)
fresh_instance()
(in
ResidueAlternativeStepWiseSamplerComb
)
fill_espGrid_values_with_type()
(in
ElectrostaticpotentialGrid
)
fold_tree()
(in
Pose
)
fresh_instance()
(in
ResidueListStepWiseSampler
)
fill_experimental_technique_records()
(in
HeaderInformation
)
fold_tree()
(in
ProtectedConformation
)
fresh_instance()
(in
InputStreamStepWiseSampler
)
fill_f1_f2()
(in
DunbrackConstraint
)
fold_tree()
(in
JumpSample
)
fresh_instance()
(in
ProteinBetaAntiParallelStepWiseSampler
)
fill_f1_f2()
(in
RotamerConstraint
)
fold_tree()
(in
SetAtomTree
)
fresh_instance()
(in
ProteinFragmentStepWiseSampler
)
fill_f1_f2()
(in
AmbiguousConstraint
)
fold_tree()
(in
RigidBodyMotionMover
)
fresh_instance()
(in
ProteinMainChainStepWiseSampler
)
fill_f1_f2()
(in
AmbiguousNMRConstraint
)
fold_tree()
(in
SeedFoldTree
)
fresh_instance()
(in
RigidBodyStepWiseSampler
)
fill_f1_f2()
(in
AmbiguousNMRDistanceConstraint
)
fold_tree()
(in
StepWiseWorkingParameters
)
fresh_instance()
(in
RigidBodyStepWiseSamplerWithResidueAlternatives
)
fill_f1_f2()
(in
AngleConstraint
)
fold_tree_from_loops()
(in
rosetta.protocols.forge.methods._protocols_forge_methods_
)
fresh_instance()
(in
RigidBodyStepWiseSamplerWithResidueList
)
fill_f1_f2()
(in
AtomPairConstraint
)
fold_tree_from_loops()
(in
rosetta.protocols.loops._protocols_loops_
)
fresh_instance()
(in
RNA_ChiStepWiseSampler
)
fill_f1_f2()
(in
BackboneStubConstraint
)
fold_tree_from_pose()
(in
rosetta.protocols.forge.methods._protocols_forge_methods_
)
fresh_instance()
(in
RNA_KIC_Sampler
)
fill_f1_f2()
(in
BackboneStubLinearConstraint
)
fold_tree_io()
(in
ImportPoseOptions
)
fresh_instance()
(in
RNA_KinematicCloser
)
fill_f1_f2()
(in
BigBinConstraint
)
FoldandDockClaimer
(in
rosetta.protocols.topology_broker._protocols_topology_broker_'
)
fresh_instance()
(in
RNA_MC_MultiSuite
)
fill_f1_f2()
(in
ConstantConstraint
)
FoldandDockClaimerAP
(in
rosetta.protocols.topology_broker._protocols_topology_broker_'
)
fresh_instance()
(in
RNA_MC_Sugar
)
fill_f1_f2()
(in
Constraint
)
FoldandDockClaimerCAP
(in
rosetta.protocols.topology_broker._protocols_topology_broker_'
)
fresh_instance()
(in
RNA_MC_Suite
)
fill_f1_f2()
(in
CoordinateConstraint
)
FoldConstraints
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
fresh_instance()
(in
RNA_NucleosideStepWiseSampler
)
fill_f1_f2()
(in
DihedralConstraint
)
FoldConstraintsAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
fresh_instance()
(in
RNA_SugarStepWiseSampler
)
fill_f1_f2()
(in
DihedralPairConstraint
)
FoldConstraintsCAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
fresh_instance()
(in
RNA_SuiteStepWiseSampler
)
fill_f1_f2()
(in
DistancePairConstraint
)
FoldTree
(in
rosetta.core.kinematics._core_kinematics_
)
fresh_instance()
(in
StepWiseCSA_JobDistributor
)
fill_f1_f2()
(in
FabConstraint
)
foldTree()
(in
CutChainMover
)
fresh_instance()
(in
StepWiseJobDistributor
)
fill_f1_f2()
(in
KofNConstraint
)
FoldTreeAP
(in
rosetta.core.kinematics._core_kinematics_
)
fresh_instance()
(in
StepWiseMonteCarloJobDistributor
)
fill_f1_f2()
(in
LocalCoordinateConstraint
)
FoldTreeCAP
(in
rosetta.core.kinematics._core_kinematics_
)
fresh_instance()
(in
CentroidRelaxMover
)
fill_f1_f2()
(in
MultiConstraint
)
FoldTreeFromLoops
(in
rosetta.protocols.loops._protocols_loops_
)
fresh_instance()
(in
FullatomRelaxMover
)
fill_f1_f2()
(in
NamedAngleConstraint
)
FoldTreeFromLoopsAP
(in
rosetta.protocols.loops._protocols_loops_
)
fresh_instance()
(in
SurfaceDockingProtocol
)
fill_f1_f2()
(in
NamedAtomPairConstraint
)
FoldTreeFromLoopsCAP
(in
rosetta.protocols.loops._protocols_loops_
)
fresh_instance()
(in
SurfaceOrientMover
)
fill_f1_f2()
(in
NonResidueTypeConstraint
)
FoldTreeFromLoopsCreator
(in
rosetta.protocols.loops._protocols_loops_
)
fresh_instance()
(in
SymDockBaseProtocol
)
fill_f1_f2()
(in
ResidueTypeConstraint
)
FoldTreeFromLoopsCreatorAP
(in
rosetta.protocols.loops._protocols_loops_
)
fresh_instance()
(in
SymDockProtocol
)
fill_f1_f2()
(in
ResidueTypeLinkingConstraint
)
FoldTreeFromLoopsCreatorCAP
(in
rosetta.protocols.loops._protocols_loops_
)
fresh_instance()
(in
SymDockingHiRes
)
fill_f1_f2()
(in
SequenceProfileConstraint
)
FoldTreeHybridize
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
fresh_instance()
(in
SymDockingLowRes
)
fill_f1_f2()
(in
SiteConstraint
)
FoldTreeHybridizeAP
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
fresh_instance()
(in
SymFoldandDockMoveRbJumpMover
)
fill_f1_f2()
(in
SiteConstraintResidues
)
FoldTreeHybridizeCAP
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
fresh_instance()
(in
SymFoldandDockRbTrialMover
)
fill_f1_f2()
(in
AmbiguousMultiConstraint
)
FoldTreeRequest
(in
rosetta.protocols.loop_modeling._protocols_loop_modeling_
)
fresh_instance()
(in
SymFoldandDockSlideTrialMover
)
fill_f1_f2()
(in
BindingSiteConstraint
)
FoldTreeSketch
(in
rosetta.core.environment._core_environment_
)
fresh_instance()
(in
SymInterfaceSidechainMinMover
)
fill_f1_f2()
(in
COMCoordinateConstraint
)
FoldTreeSketchAP
(in
rosetta.core.environment._core_environment_
)
fresh_instance()
(in
SymSidechainMinMover
)
fill_f1_f2()
(in
SequenceCoupling1BDConstraint
)
FoldTreeSketchCAP
(in
rosetta.core.environment._core_environment_
)
fresh_instance()
(in
MPSymDockMover
)
fill_f1_f2()
(in
SequenceCouplingConstraint
)
foldtype_from_name()
(in
SheetFoldTypeManager
)
fresh_instance()
(in
AlignPoseToInvrotTreeMover
)
fill_f1_f2()
(in
PocketConstraint
)
foldtype_from_spairs()
(in
SheetFoldTypeManager
)
fresh_instance()
(in
STMStoredTask
)
fill_from_spanfile()
(in
SpanningTopology
)
follow_EX_flags
(in
ChiStrategy
)
fresh_instance()
(in
StoreCombinedStoredTasksMover
)
fill_from_string()
(in
VallResidue
)
follow_EX_flags
(in
rosetta.protocols.match.upstream._protocols_match_upstream_
)
fresh_instance()
(in
StoreCompoundTaskMover
)
fill_from_string()
(in
VallResidue
)
follow_EX_flags
(in
rosetta.protocols.match.upstream
)
fresh_instance()
(in
StoreTaskMover
)
fill_from_string_cs()
(in
VallResidue
)
foo_all()
(in
rosetta.utility.py._utility_py_
)
fresh_instance()
(in
UnfoldedStateEnergyCalculatorMover
)
fill_from_string_residue_depth_version1()
(in
VallResidue
)
foo_all_sp()
(in
rosetta.utility.py._utility_py_
)
from_bond_cst()
(in
Jump
)
fill_from_string_version1()
(in
VallResidue
)
foo_int()
(in
Base
)
from_degrees()
(in
EulerAngles_Real
)
fill_from_structure()
(in
SpanningTopology
)
foo_string()
(in
Base
)
from_degrees()
(in
EulerAngles_double
)
fill_full_model_info_from_command_line()
(in
rosetta.protocols.stepwise.setup._protocols_stepwise_setup_
)
foo_value()
(in
Base
)
from_degrees()
(in
EulerAngles_float
)
fill_grid_with_backbone_heavyatom_spheres()
(in
rosetta.protocols.match._protocols_match_
)
foo_value_sp()
(in
Base
)
from_entry()
(in
PatchdockReader
)
fill_grid_with_residue_heavyatom_spheres()
(in
rosetta.protocols.match._protocols_match_
)
force_aa_neighbors()
(in
AminoAcidNeighborSparseMatrix_T_float_T
)
from_euler_angles_deg()
(in
HomogeneousTransform_T_double_T
)
fill_grid_with_residue_spheres()
(in
rosetta.protocols.match._protocols_match_
)
force_aa_neighbors()
(in
DensePDEdge
)
from_euler_angles_deg()
(in
xyzTransform_T_double_T
)
fill_h2o_hbond_set()
(in
WaterAdductHBondPotential
)
force_aa_neighbors()
(in
DoubleDensePDEdge
)
from_euler_angles_deg()
(in
xyzTransform_T_float_T
)
fill_hbond_bb_pair_score_dssp()
(in
rosetta.core.scoring.dssp._core_scoring_dssp_
)
force_aa_neighbors()
(in
DoubleLazyEdge
)
from_euler_angles_rad()
(in
HomogeneousTransform_T_double_T
)
fill_hbond_set()
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
force_aa_neighbors()
(in
FASTEREdge
)
from_euler_angles_rad()
(in
xyzTransform_T_double_T
)
fill_hbond_set_by_AHdist_threshold()
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
force_aa_neighbors()
(in
FixedBBEdge
)
from_euler_angles_rad()
(in
xyzTransform_T_float_T
)
fill_header_information()
(in
RDAT
)
force_aa_neighbors()
(in
LazyEdge
)
from_four_points()
(in
Stub
)
fill_header_record()
(in
HeaderInformation
)
force_aa_neighbors()
(in
LinearMemEdge
)
from_four_points()
(in
xyzTransform_T_double_T
)
fill_header_records()
(in
FileData
)
force_aa_neighbors()
(in
OnTheFlyEdge
)
from_four_points()
(in
xyzTransform_T_float_T
)
fill_ideal_xyz_from_icoor()
(in
ResidueType
)
force_aa_neighbors()
(in
PDEdge
)
from_quaternion()
(in
xyzTransform_T_double_T
)
fill_ideal_xyz_from_icoor()
(in
rosetta.core.chemical._core_chemical_
)
force_aa_neighbors()
(in
PrecomputedPairEnergiesEdge
)
from_quaternion()
(in
xyzTransform_T_float_T
)
fill_in_gaps()
(in
rosetta.protocols.frags._protocols_frags_
)
force_aa_neighbors()
(in
SymmLinearMemEdge
)
from_radians()
(in
EulerAngles_Real
)
fill_intra_res_hbond_set()
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
force_aa_neighbors()
(in
SymmMinimalistEdge
)
from_radians()
(in
EulerAngles_double
)
fill_jobs()
(in
GenericJobInputter
)
force_aa_neighbors()
(in
SymmOnTheFlyEdge
)
from_radians()
(in
EulerAngles_float
)
fill_jobs()
(in
ThreadingJobInputter
)
force_aa_neighbors_for_edge()
(in
FixedBBInteractionGraph
)
from_res()
(in
SSMotifFinder
)
fill_jobs()
(in
DatabaseJobInputter
)
force_all_aa_neighbors()
(in
AminoAcidNeighborSparseMatrix_T_float_T
)
from_res()
(in
StemFinder
)
fill_jobs()
(in
AtomTreeDiffJobInputter
)
force_all_aa_neighbors()
(in
DensePDEdge
)
from_rotation_matrix()
(in
EulerAngles_Real
)
fill_jobs()
(in
BatchJobInputter
)
force_all_aa_neighbors()
(in
DoubleDensePDEdge
)
from_rotation_matrix()
(in
EulerAngles_double
)
fill_jobs()
(in
JD2ResourceManagerJobInputter
)
force_all_aa_neighbors()
(in
DoubleLazyEdge
)
from_rotation_matrix()
(in
EulerAngles_float
)
fill_jobs()
(in
JobInputter
)
force_all_aa_neighbors()
(in
FASTEREdge
)
FROM_SCRATCH
(in
rosetta.protocols.stepwise.monte_carlo.mover
)
fill_jobs()
(in
LazySilentFileJobInputter
)
force_all_aa_neighbors()
(in
FixedBBEdge
)
FROM_SCRATCH
(in
rosetta.protocols.stepwise.monte_carlo.mover._protocols_stepwise_monte_carlo_mover_
)
fill_jobs()
(in
PDBJobInputter
)
force_all_aa_neighbors()
(in
LazyEdge
)
FROM_SCRATCH
(in
MoveType
)
fill_jobs()
(in
PoseInputStreamJobInputter
)
force_all_aa_neighbors()
(in
LinearMemEdge
)
from_scratch_frequency()
(in
StepWiseMoveSelector
)
fill_jobs()
(in
ScreeningJobInputter
)
force_all_aa_neighbors()
(in
OnTheFlyEdge
)
from_scratch_frequency()
(in
StepWiseMonteCarloOptions
)
fill_jobs()
(in
SilentFileJobInputter
)
force_all_aa_neighbors()
(in
PDEdge
)
from_span()
(in
EmbeddingDef
)
fill_jobs()
(in
MakeRotLibJobInputter
)
force_all_aa_neighbors()
(in
PrecomputedPairEnergiesEdge
)
from_span_positive_z()
(in
EmbeddingDef
)
fill_jobs()
(in
ParserJobInputter
)
force_all_aa_neighbors()
(in
SymmLinearMemEdge
)
from_spans()
(in
Embedding
)
fill_jobs_from_stream()
(in
JD2ResourceManagerJobInputter
)
force_all_aa_neighbors()
(in
SymmMinimalistEdge
)
from_stubs()
(in
Jump
)
fill_keyword_records()
(in
HeaderInformation
)
force_all_aa_neighbors()
(in
SymmOnTheFlyEdge
)
from_stubs()
(in
RT
)
fill_missing_atoms()
(in
Conformation
)
force_all_aa_neighbors_for_edge()
(in
FixedBBInteractionGraph
)
FromScratchMover
(in
rosetta.protocols.stepwise.monte_carlo.mover._protocols_stepwise_monte_carlo_mover_
)
fill_missing_atoms()
(in
Residue
)
force_anti_chi_res_list()
(in
StepWiseWorkingParameters
)
FromScratchMoverAP
(in
rosetta.protocols.stepwise.monte_carlo.mover._protocols_stepwise_monte_carlo_mover_
)
fill_missing_atoms()
(in
ProtectedConformation
)
force_bitflip()
(in
PDBSilentStruct
)
FromScratchMoverCAP
(in
rosetta.protocols.stepwise.monte_carlo.mover._protocols_stepwise_monte_carlo_mover_
)
fill_mutations_list()
(in
PointMutScanDriver
)
force_bitflip()
(in
BinarySilentStruct
)
front()
(in
ChainedSolutionList
)
fill_name_map()
(in
rosetta.core.io.pdb._core_io_pdb_
)
force_bitflip()
(in
RNA_SilentStruct
)
front()
(in
MoverContainer
)
fill_non_loop_cst_set()
(in
rosetta.protocols.forge.methods._protocols_forge_methods_
)
force_bitflip()
(in
RigidBodySilentStruct
)
ft_mover()
(in
ChangeAndResetFoldTreeMover
)
fill_num_neighbors()
(in
SequenceComparison
)
force_bitflip()
(in
ScoreFileSilentStruct
)
ft_nfft()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
fill_other_struct_list()
(in
SilentStruct
)
force_bitflip()
(in
ScoreJumpFileSilentStruct
)
FTR_DONT_CARE
(in
rosetta.protocols.loop_modeling
)
fill_pairs()
(in
xyzStripeHash
)
force_bitflip()
(in
SilentStruct
)
FTR_DONT_CARE
(in
rosetta.protocols.loop_modeling._protocols_loop_modeling_
)
fill_pose()
(in
PDBSilentStruct
)
force_centroid_interaction()
(in
StepWiseRNA_ModelerOptions
)
FTR_DONT_CARE
(in
FoldTreeRequest
)
fill_pose()
(in
ExtendedPoseInputStream
)
force_centroid_interaction()
(in
StepWiseMonteCarloOptions
)
FTR_LOOPS_WITH_CUTS
(in
rosetta.protocols.loop_modeling
)
fill_pose()
(in
LazySilentFilePoseInputStream
)
force_combined_gaussian_approximation()
(in
GaussianChainFunc
)
FTR_LOOPS_WITH_CUTS
(in
rosetta.protocols.loop_modeling._protocols_loop_modeling_
)
fill_pose()
(in
MetaPoseInputStream
)
force_const()
(in
GeomSampleInfo
)
FTR_LOOPS_WITH_CUTS
(in
FoldTreeRequest
)
fill_pose()
(in
PDBPoseInputStream
)
force_fold_tree()
(in
StepWiseWorkingParametersSetup
)
FTR_SIMPLE_TREE
(in
rosetta.protocols.loop_modeling
)
fill_pose()
(in
PoseInputStream
)
force_natro()
(in
MatDesGreedyOptMutationMover
)
FTR_SIMPLE_TREE
(in
rosetta.protocols.loop_modeling._protocols_loop_modeling_
)
fill_pose()
(in
SilentFilePoseInputStream
)
force_natro()
(in
MatDesPointMutationCalculator
)
FTR_SIMPLE_TREE
(in
FoldTreeRequest
)
fill_pose()
(in
DecoyStruct
)
force_natro_for_stored_task_names()
(in
MatDesGreedyOptMutationMover
)
full
(in
rosetta.numeric.interpolation
)
fill_pose()
(in
RawStruct
)
force_nbr_atom_orient()
(in
ResidueType
)
full
(in
rosetta.numeric.interpolation.periodic_range
)
fill_pose()
(in
ScoreStructJSON
)
force_north_sugar_list()
(in
StepWiseWorkingParameters
)
full
(in
rosetta.numeric.interpolation.periodic_range.periodic_value
)
fill_pose()
(in
ScoreStructText
)
force_phosphate_instantiation()
(in
StepWiseRNA_ModelerOptions
)
Full
(in
PlaceProbeMover
)
fill_pose()
(in
BinarySilentStruct
)
force_phosphate_instantiation()
(in
MultiPhosphateSampler
)
Full
(in
StructureOutputMode
)
fill_pose()
(in
RNA_SilentStruct
)
force_phosphate_instantiation()
(in
PhosphateMover
)
full_hit()
(in
rosetta.protocols.match._protocols_match_
)
fill_pose()
(in
RigidBodySilentStruct
)
force_phosphate_instantiation()
(in
StepWiseMonteCarloOptions
)
full_length_rmsd_over_residue_list()
(in
rosetta.protocols.stepwise.legacy.modeler.rna._protocols_stepwise_legacy_modeler_rna_'
)
fill_pose()
(in
ScoreFileSilentStruct
)
force_south_sugar_list()
(in
StepWiseWorkingParameters
)
FULL_MODEL_INFO
(in
Enum
)
fill_pose()
(in
ScoreJumpFileSilentStruct
)
force_syn_chi_res_list()
(in
StepWiseWorkingParameters
)
FULL_MODEL_INFO
(in
CacheableDataType
)
fill_pose()
(in
SilentStruct
)
force_unique_moves()
(in
StepWiseMoveSelector
)
full_model_info
(in
rosetta.core.pose
)
fill_pose_with_motif()
(in
ResPairMotif
)
ForceDisulfidesMover
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
full_model_info_defined()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
fill_records()
(in
HeaderInformation
)
ForceDisulfidesMoverAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
full_model_info_into_pose()
(in
SilentStruct
)
fill_rna_data_info()
(in
RNA_DataReader
)
ForceDisulfidesMoverCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
full_model_parameter_type_from_string()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
fill_rotamer_vector()
(in
SingleLigandRotamerLibrary
)
ForceDisulfidesMoverCreator
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
full_model_parameters()
(in
SilentStruct
)
fill_rotamer_vector()
(in
SingleResidueRotamerLibrary
)
ForceDisulfidesMoverCreatorAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
full_model_parameters()
(in
FullModelInfo
)
fill_rotamer_vector()
(in
SingleResidueCenrotLibrary
)
ForceDisulfidesMoverCreatorCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
full_model_pose_for_constraints()
(in
FullModelParameters
)
fill_struct()
(in
PDBSilentStruct
)
ForeignKey
(in
rosetta.basic.database.schema_generator._basic_database_schema_generator_
)
full_model_size()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
fill_struct()
(in
BinarySilentStruct
)
ForeignKeyAP
(in
rosetta.basic.database.schema_generator._basic_database_schema_generator_
)
full_name()
(in
rosetta.basic.database._basic_database_
)
fill_struct()
(in
RNA_SilentStruct
)
ForeignKeyCAP
(in
rosetta.basic.database.schema_generator._basic_database_schema_generator_
)
full_name()
(in
CarbohydrateInfo
)
fill_struct()
(in
RigidBodySilentStruct
)
forge
(in
rosetta.protocols
)
full_sample_rot_index_2_moltenres_sample_rot_index()
(in
ContinuousRotamerSets
)
fill_struct()
(in
ScoreFileSilentStruct
)
forget_chains_and_interface()
(in
RestrictDesignToProteinDNAInterface
)
full_sequence()
(in
FullModelInfo
)
fill_struct()
(in
ScoreJumpFileSilentStruct
)
forget_initial_loops()
(in
AnchoredDesignMover
)
full_sequence()
(in
FullModelParameters
)
fill_struct()
(in
SilentStruct
)
form_disulfide()
(in
rosetta.core.conformation._core_conformation_
)
full_sequence()
(in
StepWiseBasicWorkingParameters
)
fill_struct_with_residue_numbers()
(in
SilentStruct
)
form_disulfide_helper()
(in
rosetta.core.conformation._core_conformation_
)
full_to_conventional()
(in
FullModelParameters
)
fill_template_frames_from_pdb()
(in
rosetta.core.fragment._core_fragment_
)
formal_charge()
(in
Atom
)
full_to_conventional_resnum_and_chain()
(in
FullModelParameters
)
fill_title_records()
(in
HeaderInformation
)
formal_charge()
(in
MolFileIOAtom
)
full_to_sub()
(in
FullModelInfo
)
fill_top_level()
(in
HierarchicalLevel
)
FORMAT_str_parser()
(in
GDB
)
full_to_sub()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
fill_with()
(in
AtomID_Map_T_bool_T
)
format_string()
(in
FormatStringOutputter
)
full_to_sub()
(in
InputStreamWithResidueInfo
)
fill_with()
(in
AtomID_Map_T_core_id_AtomID_T
)
FormatStringOutputter
(in
rosetta.protocols.outputter._protocols_outputter_
)
full_to_sub()
(in
StepWiseBasicWorkingParameters
)
fill_with()
(in
AtomID_Map_T_double_T
)
FormatStringOutputterAP
(in
rosetta.protocols.outputter._protocols_outputter_
)
fullatom()
(in
DecoyStruct
)
fill_with()
(in
AtomID_Map_T_numeric_xyzVector_T_double_T__T
)
FormatStringOutputterCAP
(in
rosetta.protocols.outputter._protocols_outputter_
)
fullatom()
(in
BinarySilentStruct
)
fill_with_perturbations_of_existing_entities()
(in
GeneticAlgorithm
)
formatted_icoord_tree()
(in
rosetta.core.chemical._core_chemical_
)
fullatom()
(in
RNA_SilentStruct
)
fill_with_perturbations_of_existing_entities()
(in
GeneticAlgorithmBase
)
formatted_objs_names()
(in
MultiObjective
)
fullatom_scorefunction()
(in
BDR
)
fill_with_random_entities()
(in
GeneticAlgorithm
)
formatted_objs_values()
(in
MultiObjective
)
fullatom_scorefxn()
(in
Protocol
)
fill_with_random_entities()
(in
GeneticAlgorithmBase
)
FormFactor
(in
rosetta.core.scoring.saxs._core_scoring_saxs_
)
fullatom_stage()
(in
LoopModeler
)
fillarray()
(in
XfoxmScore
)
FormFactorAP
(in
rosetta.core.scoring.saxs._core_scoring_saxs_
)
FullatomCustomPairDistanceEnergy
(in
rosetta.core.scoring.custom_pair_distance._core_scoring_custom_pair_distance_
)
fillTargetPockets()
(in
PocketGrid
)
FormFactorCAP
(in
rosetta.core.scoring.saxs._core_scoring_saxs_
)
FullatomCustomPairDistanceEnergyAP
(in
rosetta.core.scoring.custom_pair_distance._core_scoring_custom_pair_distance_
)
Filter
(in
rosetta.protocols.filters._protocols_filters_
)
FormFactorManager
(in
rosetta.core.scoring.saxs._core_scoring_saxs_
)
FullatomCustomPairDistanceEnergyCAP
(in
rosetta.core.scoring.custom_pair_distance._core_scoring_custom_pair_distance_
)
filter
(in
rosetta.protocols.generalized_kinematic_closure
)
FormFactorManagerAP
(in
rosetta.core.scoring.saxs._core_scoring_saxs_
)
FullatomCustomPairDistanceEnergyCreator
(in
rosetta.core.scoring.custom_pair_distance._core_scoring_custom_pair_distance_
)
filter()
(in
OperateOnCertainResidues
)
FormFactorManagerCAP
(in
rosetta.core.scoring.saxs._core_scoring_saxs_
)
FullatomCustomPairDistanceEnergyCreatorAP
(in
rosetta.core.scoring.custom_pair_distance._core_scoring_custom_pair_distance_
)
filter()
(in
ResPairMotif
)
FORMS_DISULFIDE_BOND
(in
rosetta
)
FullatomCustomPairDistanceEnergyCreatorCAP
(in
rosetta.core.scoring.custom_pair_distance._core_scoring_custom_pair_distance_
)
filter()
(in
AnchoredDesignMover
)
FORMS_DISULFIDE_BOND
(in
rosetta.core.chemical
)
FullatomDisulfideEnergy
(in
rosetta.core.scoring.disulfides._core_scoring_disulfides_
)
filter()
(in
HotspotStubSet
)
FORMS_DISULFIDE_BOND
(in
rosetta.core.chemical._core_chemical_
)
FullatomDisulfideEnergyAP
(in
rosetta.core.scoring.disulfides._core_scoring_disulfides_
)
filter()
(in
IteratedConvergenceMover
)
FORMS_DISULFIDE_BOND
(in
ResidueProperty
)
FullatomDisulfideEnergyCAP
(in
rosetta.core.scoring.disulfides._core_scoring_disulfides_
)
filter()
(in
FilterScanFilter
)
forms_disulfide_bond()
(in
ResidueType
)
FullatomDisulfideEnergyComponents
(in
rosetta.core.scoring.disulfides._core_scoring_disulfides_
)
filter()
(in
SetTemperatureFactor
)
forward
(in
ChainDirection
)
FullatomDisulfideEnergyComponentsAP
(in
rosetta.core.scoring.disulfides._core_scoring_disulfides_
)
filter()
(in
DdgFilter
)
forward
(in
rosetta.protocols.loops.loop_closure.ccd._protocols_loops_loop_closure_ccd_
)
FullatomDisulfideEnergyComponentsCAP
(in
rosetta.core.scoring.disulfides._core_scoring_disulfides_
)
filter()
(in
DeltaFilter
)
forward
(in
rosetta.protocols.loops.loop_closure.ccd
)
FullatomDisulfideEnergyContainer
(in
rosetta.core.scoring.disulfides._core_scoring_disulfides_
)
filter()
(in
RelativePoseFilter
)
forward_check()
(in
Motif
)
FullatomDisulfideEnergyContainerAP
(in
rosetta.core.scoring.disulfides._core_scoring_disulfides_
)
filter()
(in
ReportFilter
)
forward_jump()
(in
Motif
)
FullatomDisulfideEnergyContainerCAP
(in
rosetta.core.scoring.disulfides._core_scoring_disulfides_
)
filter()
(in
Sigmoid
)
found_centroid_interaction()
(in
RNA_BaseCentroidChecker
)
FullatomDisulfideEnergyCreator
(in
rosetta.core.scoring.disulfides._core_scoring_disulfides_
)
filter()
(in
ContingentAcceptMover
)
FourAtomsConstraintData
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
FullatomDisulfideEnergyCreatorAP
(in
rosetta.core.scoring.disulfides._core_scoring_disulfides_
)
filter()
(in
ResetBaselineMover
)
FourAtomsConstraintDataAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
FullatomDisulfideEnergyCreatorCAP
(in
rosetta.core.scoring.disulfides._core_scoring_disulfides_
)
filter()
(in
ddG
)
FourAtomsConstraintDataCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
FullatomDisulfideParams13
(in
rosetta.core.scoring.disulfides._core_scoring_disulfides_
)
filter()
(in
StepWiseRNA_CombineLongLoopFilterer
)
fourier
(in
rosetta.numeric
)
FullatomDisulfideParams13AP
(in
rosetta.core.scoring.disulfides._core_scoring_disulfides_
)
filter_by_lj()
(in
MatchCollisionFilter
)
FourPointsFunc
(in
rosetta.core.scoring.func._core_scoring_func_
)
FullatomDisulfideParams13CAP
(in
rosetta.core.scoring.disulfides._core_scoring_disulfides_
)
filter_deltas()
(in
GreedyOptMutationMover
)
FourPointsFuncAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
FullatomDisulfidePotential
(in
rosetta.core.scoring.disulfides._core_scoring_disulfides_
)
filter_deltas()
(in
ParetoOptMutationMover
)
FourPointsFuncCAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
FullatomDisulfidePotentialAP
(in
rosetta.core.scoring.disulfides._core_scoring_disulfides_
)
filter_deltas()
(in
MatDesGreedyOptMutationMover
)
fp_compare()
(in
PlaidFingerprint
)
FullatomDisulfidePotentialCAP
(in
rosetta.core.scoring.disulfides._core_scoring_disulfides_
)
filter_loop_neighbors_by_distance()
(in
rosetta.protocols.loops._protocols_loops_
)
fp_compare_deriv()
(in
PlaidFingerprint
)
FullatomRelaxMover
(in
rosetta.protocols.surface_docking._protocols_surface_docking_
)
filter_max_angle()
(in
HSSTripletFilter
)
frac2cart()
(in
ElectronDensity
)
FullatomRelaxMoverAP
(in
rosetta.protocols.surface_docking._protocols_surface_docking_
)
filter_max_dist()
(in
HSSTripletFilter
)
frac_atoms_within()
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
FullatomRelaxMoverCAP
(in
rosetta.protocols.surface_docking._protocols_surface_docking_
)
filter_min_angle()
(in
HSSTripletFilter
)
fraction_by_recombination()
(in
GeneticAlgorithmBase
)
FullAtomRNA_Fragments
(in
rosetta.protocols.farna._protocols_farna_
)
filter_min_dist()
(in
HSSTripletFilter
)
frag_files()
(in
StepWiseProteinModelerOptions
)
FullAtomRNA_FragmentsAP
(in
rosetta.protocols.farna._protocols_farna_
)
filter_motifs()
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
frag_id()
(in
FragID_Iterator
)
FullAtomRNA_FragmentsCAP
(in
rosetta.protocols.farna._protocols_farna_
)
filter_name()
(in
ExposedHydrophobicsFilterCreator
)
frag_id()
(in
Frame
)
FullChiSampleSet
(in
rosetta.protocols.match.upstream._protocols_match_upstream_
)
filter_name()
(in
MatchFilter
)
frag_libs()
(in
LoopRelaxMover
)
FullChiSampleSetAP
(in
rosetta.protocols.match.upstream._protocols_match_upstream_
)
filter_name()
(in
RelativePoseFilter
)
frag_libs()
(in
MultiThreadingMover
)
FullChiSampleSetCAP
(in
rosetta.protocols.match.upstream._protocols_match_upstream_
)
filter_names()
(in
MatcherTask
)
frag_libs()
(in
ThreadingMover
)
FullModelInfo
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
filter_native_big_bins()
(in
StepWiseProteinModelerOptions
)
frag_libs()
(in
LoopMover
)
FullModelInfoAP
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
filter_native_big_bins()
(in
StepWiseMonteCarloOptions
)
frag_picker
(in
rosetta.protocols
)
FullModelInfoCAP
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
filter_on()
(in
FilterStructs
)
frag_size()
(in
TorsionFragmentMover
)
FullModelParameters
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
filter_pareto_opt_poses()
(in
GreedyOptMutationMover
)
frag_sizes()
(in
FragLib
)
FullModelParametersAP
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
filter_pareto_opt_poses()
(in
MatDesGreedyOptMutationMover
)
frag_type()
(in
FragFactory
)
FullModelParametersCAP
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
filter_redundant()
(in
MotifHits
)
fragbias_reporter()
(in
FragmentBiasAssigner
)
FullModelParameterType
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
filter_seqpos_pareto_opt_ptmuts()
(in
GreedyOptMutationMover
)
FragData
(in
rosetta.core.fragment._core_fragment_
)
FUNC
(in
rosetta.basic
)
filter_seqpos_pareto_opt_ptmuts()
(in
MatDesGreedyOptMutationMover
)
FragDataAP
(in
rosetta.core.fragment._core_fragment_
)
FUNC
(in
rosetta.basic._basic_
)
filter_similar()
(in
MultiObjective
)
FragDataCAP
(in
rosetta.core.fragment._core_fragment_
)
FUNC
(in
ProfTag
)
FILTER_STAGE2_BEGINNING
(in
Enum
)
FragFactory
(in
rosetta.core.fragment._core_fragment_
)
func
(in
rosetta.core.scoring
)
FILTER_STAGE2_BEGINNING
(in
CacheableDataType
)
FragFactoryAP
(in
rosetta.core.fragment._core_fragment_
)
Func
(in
rosetta.core.scoring.func._core_scoring_func_
)
FILTER_STAGE2_END
(in
Enum
)
FragFactoryCAP
(in
rosetta.core.fragment._core_fragment_
)
func()
(in
CenHBPotential
)
FILTER_STAGE2_END
(in
CacheableDataType
)
FragID
(in
rosetta.core.fragment._core_fragment_
)
func()
(in
SmoothScoreTermCoeffs
)
FILTER_STAGE2_HALF
(in
Enum
)
fragID()
(in
FrameList
)
func()
(in
AngleConstraint
)
FILTER_STAGE2_HALF
(in
CacheableDataType
)
FragID_Iterator
(in
rosetta.core.fragment._core_fragment_
)
func()
(in
BoundFunc
)
FILTER_STAGE2_QUARTER
(in
Enum
)
FragID_IteratorAP
(in
rosetta.core.fragment._core_fragment_
)
func()
(in
DOF_Constraint
)
FILTER_STAGE2_QUARTER
(in
CacheableDataType
)
FragID_IteratorCAP
(in
rosetta.core.fragment._core_fragment_
)
func()
(in
OffsetPeriodicBoundFunc
)
filter_structs()
(in
DesignTask
)
FragIDAP
(in
rosetta.core.fragment._core_fragment_
)
func()
(in
PeriodicBoundFunc
)
filter_structurally_identical_motifs()
(in
ResPairMotifs
)
FragIDCAP
(in
rosetta.core.fragment._core_fragment_
)
func()
(in
DistanceFunc
)
filter_structurally_similar_motifs()
(in
ResPairMotifs
)
FragInsertAndAlignMover
(in
rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
)
func()
(in
CBSG_Dihedral_Func
)
filter_thresholds()
(in
MatDesGreedyOptMutationMover
)
FragInsertAndAlignMoverAP
(in
rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
)
func()
(in
CB_Angle_Func
)
filter_thresholds()
(in
MatDesPointMutationCalculator
)
FragInsertAndAlignMoverCAP
(in
rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
)
func()
(in
CaCbCbCa_Dihedral_Func
)
filter_type
(in
rosetta.protocols.generalized_kinematic_closure.filter._protocols_generalized_kinematic_closure_filter_
)
FragLib
(in
rosetta.protocols.frags._protocols_frags_
)
func()
(in
CaCbCb_Angle_Func
)
filter_type()
(in
CoreDunbrackFilter
)
FragLibAP
(in
rosetta.protocols.frags._protocols_frags_
)
func()
(in
Cb_Distance_Func
)
filter_upstream_collisions_by_score()
(in
MatcherTask
)
FragLibCAP
(in
rosetta.protocols.frags._protocols_frags_
)
func()
(in
Cen_Distance_Func
)
filter_upstream_downstream_collisions()
(in
MatcherTask
)
fragment
(in
rosetta.core
)
func()
(in
NCaCaC_Dihedral_Func
)
filter_upstream_downstream_collisions_by_score()
(in
MatcherTask
)
FRAGMENT
(in
CompoundToken
)
func()
(in
SGSG_Dihedral_Func
)
filter_upstream_residue_collisions()
(in
MatcherTask
)
FRAGMENT
(in
HeaderInformation
)
func()
(in
SG_Dist_Func
)
filter_val()
(in
ReportFilter
)
fragment()
(in
FragID
)
func()
(in
AmberPeriodicFunc
)
filter_value()
(in
CoreDunbrackFilter
)
fragment()
(in
FragmentRmsd
)
func()
(in
CharmmPeriodicFunc
)
filter_value()
(in
InterlockingAromaFilter
)
fragment()
(in
Frame
)
func()
(in
CircularGeneral1D_Func
)
filter_value()
(in
ParallelBetaPairingPreferenceFilter
)
fragment_as_pose()
(in
Frame
)
func()
(in
CircularHarmonicFunc
)
FilterAP
(in
rosetta.protocols.filters._protocols_filters_
)
fragment_contacts()
(in
FragmentPicker
)
func()
(in
CircularPowerFunc
)
FilterCAP
(in
rosetta.protocols.filters._protocols_filters_
)
FRAGMENT_MOVER
(in
rosetta.basic
)
func()
(in
CircularSigmoidalFunc
)
FilterCollection
(in
rosetta.protocols.filters._protocols_filters_
)
FRAGMENT_MOVER
(in
rosetta.basic._basic_
)
func()
(in
CircularSplineFunc
)
FilterCollectionAP
(in
rosetta.protocols.filters._protocols_filters_
)
FRAGMENT_MOVER
(in
ProfTag
)
func()
(in
ConstantFunc
)
FilterCollectionCAP
(in
rosetta.protocols.filters._protocols_filters_
)
fragment_ptr()
(in
FragID
)
func()
(in
CountViolFunc
)
FilterCreator
(in
rosetta.protocols.filters._protocols_filters_
)
fragment_ptr()
(in
Frame
)
func()
(in
EtableFunc
)
FilterCreatorAP
(in
rosetta.protocols.filters._protocols_filters_
)
fragment_set_slice()
(in
rosetta.core.fragment._core_fragment_
)
func()
(in
FadeFunc
)
FilterCreatorCAP
(in
rosetta.protocols.filters._protocols_filters_
)
fragment_specification()
(in
FragmentLookup
)
func()
(in
FlatHarmonicFunc
)
filtered_abego()
(in
SecondaryStructureFilter
)
fragment_specification()
(in
FragmentLookupFilter
)
func()
(in
Func
)
filtered_area()
(in
ShapeComplementarityFilter
)
FragmentAllAtomCrmsd
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
func()
(in
GaussianChainDoubleFunc
)
filtered_base_axis_array()
(in
RNA_FilteredBaseBaseInfo
)
FragmentAllAtomCrmsdAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
func()
(in
GaussianChainFunc
)
filtered_base_pair_array()
(in
RNA_FilteredBaseBaseInfo
)
FragmentAllAtomCrmsdCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
func()
(in
GaussianChainQuadrupleFunc
)
filtered_base_stack_array()
(in
RNA_FilteredBaseBaseInfo
)
FragmentBiasAssigner
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
func()
(in
GaussianChainSingleFunc
)
filtered_base_stack_axis_array()
(in
RNA_FilteredBaseBaseInfo
)
FragmentBiasAssignerAP
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
func()
(in
GaussianChainTripleFunc
)
filtered_base_stagger_array()
(in
RNA_FilteredBaseBaseInfo
)
FragmentBiasAssignerCAP
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
func()
(in
GaussianFunc
)
filtered_sc()
(in
ShapeComplementarityFilter
)
FragmentCandidate
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
)
func()
(in
HarmonicFunc
)
filtered_score()
(in
PackStatFilter
)
FragmentCandidateAP
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
)
func()
(in
IdentityFunc
)
filtered_sheet_topology()
(in
SheetTopologyFilter
)
FragmentCandidateCAP
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
)
func()
(in
KarplusFunc
)
filtered_ss()
(in
SecondaryStructureFilter
)
FragmentChunkCrms
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
func()
(in
LinearPenaltyFunction
)
filtered_type()
(in
FragQualFilter
)
FragmentChunkCrmsAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
func()
(in
MinMultiHarmonicFunc
)
filtered_value()
(in
FragQualFilter
)
FragmentChunkCrmsCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
func()
(in
MixtureFunc
)
filtered_value()
(in
HolesFilter
)
FragmentCM
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
func()
(in
PeriodicFunc
)
filtered_value()
(in
InterRepeatContactFilter
)
FragmentCMAP
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
func()
(in
SOGFunc
)
filtered_value()
(in
IntraRepeatContactFilter
)
FragmentCMCAP
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
func()
(in
SOGFunc_Impl
)
filtered_value()
(in
LeastNativeLike9merFilter
)
FragmentCMCreator
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
func()
(in
ScalarWeightedFunc
)
FilteredSolutions
(in
rosetta.protocols.kinematic_closure.solution_pickers._protocols_kinematic_closure_solution_pickers_
)
FragmentCMCreatorAP
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
func()
(in
SigmoidFunc
)
FilteredSolutionsAP
(in
rosetta.protocols.kinematic_closure.solution_pickers._protocols_kinematic_closure_solution_pickers_
)
FragmentCMCreatorCAP
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
func()
(in
SkipViolFunc
)
FilteredSolutionsCAP
(in
rosetta.protocols.kinematic_closure.solution_pickers._protocols_kinematic_closure_solution_pickers_
)
FragmentComparatorBase
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
)
func()
(in
SoedingFunc
)
Filterer_Count
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
FragmentComparatorBaseAP
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
)
func()
(in
SplineFunc
)
Filterer_CountAP
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
FragmentComparatorBaseCAP
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
)
func()
(in
SquareWell2Func
)
Filterer_CountCAP
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
FragmentCost
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
func()
(in
SquareWellFunc
)
FilterFactory
(in
rosetta.protocols.filters._protocols_filters_
)
FragmentCostAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
func()
(in
SumFunc
)
FilterFactoryAP
(in
rosetta.protocols.filters._protocols_filters_
)
FragmentCostCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
func()
(in
TopOutFunc
)
FilterFactoryCAP
(in
rosetta.protocols.filters._protocols_filters_
)
FragmentCrmsd
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
func()
(in
USOGFunc
)
FilterMover
(in
rosetta.protocols.moves._protocols_moves_
)
FragmentCrmsdAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
func()
(in
LoopScoreInfo
)
FilterMoverAP
(in
rosetta.protocols.moves._protocols_moves_
)
FragmentCrmsdCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
func()
(in
FastLinearFunc
)
FilterMoverCAP
(in
rosetta.protocols.moves._protocols_moves_
)
FragmentCrmsdResDepth
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
func()
(in
GeometricFunc
)
FilterReporterMover
(in
rosetta.protocols.moves._protocols_moves_
)
FragmentCrmsdResDepthAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
func()
(in
InvGeometricFunc
)
FilterReporterMoverAP
(in
rosetta.protocols.moves._protocols_moves_
)
FragmentCrmsdResDepthCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
func()
(in
LinearFunc
)
FilterReporterMoverCAP
(in
rosetta.protocols.moves._protocols_moves_
)
FragmentDME
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
func()
(in
RampingFunc
)
filters
(in
rosetta.protocols.denovo_design
)
FragmentDMEAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
func()
(in
TensorsOptimizer
)
filters
(in
rosetta.protocols
)
FragmentDMECAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
func()
(in
TensorsOptimizerFix
)
filters
(in
rosetta.protocols.fldsgn
)
FragmentIO
(in
rosetta.core.fragment._core_fragment_
)
func()
(in
TensorsOptimizerSvd
)
filters
(in
rosetta.protocols.indexed_structure_store
)
FragmentIOAP
(in
rosetta.core.fragment._core_fragment_
)
func_()
(in
MixtureFunc
)
filters
(in
rosetta.protocols.protein_interface_design
)
FragmentIOCAP
(in
rosetta.core.fragment._core_fragment_
)
func_1d
(in
rosetta.core.optimization._core_optimization_
)
filters()
(in
GreedyOptMutationMover
)
FragmentJumpCM
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
func_1dAP
(in
rosetta.core.optimization._core_optimization_
)
filters()
(in
ParetoOptMutationMover
)
FragmentJumpCMAP
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
func_1dCAP
(in
rosetta.core.optimization._core_optimization_
)
filters()
(in
PointMutationCalculator
)
FragmentJumpCMCAP
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
FuncAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
filters()
(in
MatDesGreedyOptMutationMover
)
FragmentJumpCMCreator
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
FuncCAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
filters()
(in
MatDesPointMutationCalculator
)
FragmentJumpCMCreatorAP
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
FuncFactory
(in
rosetta.core.scoring.func._core_scoring_func_
)
filters()
(in
Operator
)
FragmentJumpCMCreatorCAP
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
FuncFactoryAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
filters()
(in
GenericMonteCarloMover
)
FragmentLibrary
(in
rosetta.protocols.farna._protocols_farna_
)
FuncFactoryCAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
FilterScanFilter
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
FragmentLibraryAP
(in
rosetta.protocols.farna._protocols_farna_
)
funcs()
(in
SumFunc
)
FilterScanFilterAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
FragmentLibraryCAP
(in
rosetta.protocols.farna._protocols_farna_
)
FUNCTION
(in
rosetta.numeric.expression_parser
)
FilterScanFilterCAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
FragmentLibraryManager
(in
rosetta.core.fragment.picking_old._core_fragment_picking_old_
)
FUNCTION
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
FilterScanFilterCreator
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
FragmentLibraryManagerAP
(in
rosetta.core.fragment.picking_old._core_fragment_picking_old_
)
FUNCTION
(in
TokenType
)
FilterScanFilterCreatorAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
FragmentLibraryManagerCAP
(in
rosetta.core.fragment.picking_old._core_fragment_picking_old_
)
function()
(in
ArithmeticASTFunction
)
FilterScanFilterCreatorCAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
FragmentLookup
(in
rosetta.core.indexed_structure_store._core_indexed_structure_store_
)
function_expression()
(in
DynamicAggregateFunction
)
FilterStructs
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
FragmentLookupAP
(in
rosetta.core.indexed_structure_store._core_indexed_structure_store_
)
function_expression()
(in
EntityFunc
)
FilterStructs_Packstat
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
FragmentLookupCAP
(in
rosetta.core.indexed_structure_store._core_indexed_structure_store_
)
function_tag()
(in
GeomSampleInfo
)
FilterStructs_PackstatAP
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
FragmentLookupFilter
(in
rosetta.protocols.indexed_structure_store.filters._protocols_indexed_structure_store_filters_
)
FunctionSign
(in
RDFBase
)
FilterStructs_PackstatCAP
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
FragmentLookupFilterAP
(in
rosetta.protocols.indexed_structure_store.filters._protocols_indexed_structure_store_filters_
)
FunctionToken
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
FilterStructs_TotalCharge
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
FragmentLookupFilterCAP
(in
rosetta.protocols.indexed_structure_store.filters._protocols_indexed_structure_store_filters_
)
FunctionTokenAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
FilterStructs_TotalChargeAP
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
FragmentLookupFilterCreator
(in
rosetta.protocols.indexed_structure_store.filters._protocols_indexed_structure_store_filters_
)
FunctionTokenCAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
FilterStructs_TotalChargeCAP
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
FragmentLookupFilterCreatorAP
(in
rosetta.protocols.indexed_structure_store.filters._protocols_indexed_structure_store_filters_
)
FunGroupTK
(in
rosetta.protocols.kinmatch._protocols_kinmatch_
)
FilterStructsAP
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
FragmentLookupFilterCreatorCAP
(in
rosetta.protocols.indexed_structure_store.filters._protocols_indexed_structure_store_filters_
)
FunGroupTKAP
(in
rosetta.protocols.kinmatch._protocols_kinmatch_
)
FilterStructsCAP
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
FragmentLookupResult
(in
rosetta.core.indexed_structure_store._core_indexed_structure_store_
)
FunGroupTKCAP
(in
rosetta.protocols.kinmatch._protocols_kinmatch_
)
final_check_sw_by_dis()
(in
StrandBundleFeatures
)
FragmentLookupResultAP
(in
rosetta.core.indexed_structure_store._core_indexed_structure_store_
)
FURANOSE
(in
rosetta
)
final_cleanup()
(in
PlaceSimultaneouslyMover
)
FragmentLookupResultCAP
(in
rosetta.core.indexed_structure_store._core_indexed_structure_store_
)
FURANOSE
(in
rosetta.core.chemical
)
final_fold_tree()
(in
KinematicControl
)
FragmentMover
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
FURANOSE
(in
rosetta.core.chemical._core_chemical_
)
final_iter()
(in
Scheduler
)
FragmentMoverAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
FURANOSE
(in
ResidueProperty
)
final_pose()
(in
PDBOutput
)
FragmentMoverCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
final_pose()
(in
DatabaseJobOutputter
)
FragmentPair
(in
rosetta.protocols.features.helixAssembly._protocols_features_helixAssembly_
)
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