Module _protocols_toolbox_rigid_body_

create_euler_rotation( (xyzMatrix_Real)M, (float)alpha, (float)beta, (float)gamma) -> None :
    protocols/toolbox/rigid_body/util.hh:105

    C++ signature :
        void create_euler_rotation(numeric::xyzMatrix<double> {lvalue},double,double,double)

create_euler_rotation( (xyzMatrix_Real)M, (float)alpha, (float)beta, (float)gamma, (xyzVector_Real), (xyzVector_Real)axis2, (xyzVector_Real)axis3) -> None :
    protocols/toolbox/rigid_body/util.hh:98

    C++ signature :
        void create_euler_rotation(numeric::xyzMatrix<double> {lvalue},double,double,double,numeric::xyzVector<double>,numeric::xyzVector<double>,numeric::xyzVector<double>)

figure_out_moving_partition_res( (Pose)pose, (int)moving_res, (int)reference_res) -> vector1_Size :
    protocols/toolbox/rigid_body/util.hh:68

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > figure_out_moving_partition_res(core::pose::Pose,unsigned long,unsigned long)

figure_out_reference_res_for_jump( (Pose)pose, (int)moving_res) -> int :
    //////////////////////////////////////////////////////////
    

    C++ signature :
        unsigned long figure_out_reference_res_for_jump(core::pose::Pose,unsigned long)

get_atom_coordinates( (object)xyz_list, (int)seq_num, (Residue)rsd_at_origin, (Stub)moving_res_base_stub) -> None :
    protocols/toolbox/rigid_body/util.hh:40

    C++ signature :
        void get_atom_coordinates(utility::vector1<std::pair<core::id::AtomID, numeric::xyzVector<double> >, std::allocator<std::pair<core::id::AtomID, numeric::xyzVector<double> > > > {lvalue},unsigned long,core::conformation::Residue,core::kinematics::Stub)

get_base_centroid_and_rotation_matrix( (Pose)pose, (int)i, (xyzVector_Real)centroid, (xyzMatrix_Real)M) -> None :
    protocols/toolbox/rigid_body/util.hh:124

    C++ signature :
        void get_base_centroid_and_rotation_matrix(core::pose::Pose,unsigned long,numeric::xyzVector<double> {lvalue},numeric::xyzMatrix<double> {lvalue})

get_euler_angles( (float)alpha, (float)beta, (float)gamma, (xyzMatrix_Real)M1, (xyzMatrix_Real)M2 [, (bool)verbose=True]) -> None :
    //////////////////////////////////////////////////////////////////////////////////////
    

    C++ signature :
        void get_euler_angles(double {lvalue},double {lvalue},double {lvalue},numeric::xyzMatrix<double>,numeric::xyzMatrix<double> [,bool=True])

get_specific_atom_coordinate( (str)atom_name, (xyzVector_Real)atom_pos, (Residue)rsd_at_origin, (Stub)moving_res_base_stub) -> None :
    protocols/toolbox/rigid_body/util.hh:57

    C++ signature :
        void get_specific_atom_coordinate(std::string,numeric::xyzVector<double> {lvalue},core::conformation::Residue,core::kinematics::Stub)

get_specific_atom_coordinate( (int)atom_index, (xyzVector_Real)atom_pos, (Residue)rsd_at_origin, (Stub)moving_res_base_stub) -> None :
    protocols/toolbox/rigid_body/util.hh:50

    C++ signature :
        void get_specific_atom_coordinate(unsigned long,numeric::xyzVector<double> {lvalue},core::conformation::Residue,core::kinematics::Stub)

get_specific_atom_coordinate( (xyzVector_Real)atom_pos, (Stub)moving_res_base_stub) -> None :
    protocols/toolbox/rigid_body/util.hh:44

    C++ signature :
        void get_specific_atom_coordinate(numeric::xyzVector<double> {lvalue},core::kinematics::Stub)

initialize_stub( (Residue)rsd) -> Stub :
    protocols/toolbox/rigid_body/util.hh:74

    C++ signature :
        core::kinematics::Stub initialize_stub(core::conformation::Residue)

rotate( (Pose)pose, (xyzMatrix_Real)M, (Pose)ref_pose, (vector1_Size)moving_res) -> None :
    protocols/toolbox/rigid_body/util.hh:121

    C++ signature :
        void rotate(core::pose::Pose {lvalue},numeric::xyzMatrix<double>,core::pose::Pose,utility::vector1<unsigned long, std::allocator<unsigned long> >)

rotate( (Pose)pose, (xyzMatrix_Real)M, (Pose)ref_pose, (vector1_Size)moving_res, (xyzVector_Real)centroid) -> None :
    protocols/toolbox/rigid_body/util.hh:116

    C++ signature :
        void rotate(core::pose::Pose {lvalue},numeric::xyzMatrix<double>,core::pose::Pose,utility::vector1<unsigned long, std::allocator<unsigned long> >,numeric::xyzVector<double>)

set_to_origin( (Pose)pose, (int)seq_num, (bool)verbose) -> None :
    protocols/toolbox/rigid_body/util.hh:71

    C++ signature :
        void set_to_origin(core::pose::Pose {lvalue},unsigned long,bool)

transform_moving_partition_to_origin( (Pose)pose_start, (int)moving_res, (vector1_Size)moving_partition_res_) -> Pose :
    protocols/toolbox/rigid_body/util.hh:79

    C++ signature :
        boost::shared_ptr<core::pose::Pose const> transform_moving_partition_to_origin(core::pose::Pose,unsigned long,utility::vector1<unsigned long, std::allocator<unsigned long> >)

translate( (Pose)pose, (xyzVector_Real)shift, (Pose)ref_pose, (vector1_Size)moving_res) -> None :
    protocols/toolbox/rigid_body/util.hh:110

    C++ signature :
        void translate(core::pose::Pose {lvalue},numeric::xyzVector<double>,core::pose::Pose,utility::vector1<unsigned long, std::allocator<unsigned long> >)

translate_and_rotate_residue_to_origin( (Pose)pose, (int)i) -> None :
    protocols/toolbox/rigid_body/util.hh:130

    C++ signature :
        void translate_and_rotate_residue_to_origin(core::pose::Pose {lvalue},unsigned long)

translate_and_rotate_residue_to_origin( (Pose)pose, (int)i, (vector1_Size)moving_res [, (bool)do_not_rotate=False]) -> None :
    protocols/toolbox/rigid_body/util.hh:127

    C++ signature :
        void translate_and_rotate_residue_to_origin(core::pose::Pose {lvalue},unsigned long,utility::vector1<unsigned long, std::allocator<unsigned long> > [,bool=False])