SingletonBase_T_protocols_genetic_algorithm_EntityElementFactory_T
SingletonBase is meant to serve as a base class for singleton classes in Rosetta handling the initialization of the singleton in a thread-safe way.

SingletonBase_T_protocols_genetic_algorithm_EntityElementFactory_TAP

SingletonBase_T_protocols_genetic_algorithm_EntityElementFactory_TCAP

StructureFileNames
protocols/pack_daemon/DynamicAggregateFunction.hh:458

StructureFileNamesAP

StructureFileNamesCAP

SurrogateVariableExpression
Stores the result of the surragate expression as if this expression were a variable, but defers to the root expression for questions of deriviatives and which variables are active (this is not a real variable).

SurrogateVariableExpressionAP

SurrogateVariableExpressionCAP

TopEntitySet
protocols/pack_daemon/MultistateFitnessFunction.hh:42

TopEntitySetAP

TopEntitySetCAP

VMax
protocols/pack_daemon/DynamicAggregateFunction.hh:209

VMaxAP

VMaxBy
Take two vector expressions of equal length; returns the value from position i in expression 2 where position i is the position with the largest value in expression 1

VMaxByAP

VMaxByCAP

VMaxCAP

VMin
protocols/pack_daemon/DynamicAggregateFunction.hh:233

VMinAP

VMinBy
Take two vector expressions of equal length; returns the value from position i in expression 2 where position i is the position with the smallest value in expression 1

VMinByAP

VMinByCAP

VMinCAP

VariableVectorExpression
protocols/pack_daemon/DynamicAggregateFunction.hh:91

VariableVectorExpressionAP

VariableVectorExpressionCAP

VectorExpression
protocols/pack_daemon/DynamicAggregateFunction.hh:47

VectorExpressionAP

VectorExpressionCAP

VectorExpressionCreator
protocols/pack_daemon/DynamicAggregateFunction.hh:426

VectorExpressionCreatorAP

VectorExpressionCreatorCAP

VectorFunction
protocols/pack_daemon/DynamicAggregateFunction.hh:168

VectorFunction2
protocols/pack_daemon/DynamicAggregateFunction.hh:187

VectorFunction2AP

VectorFunction2CAP

VectorFunctionAP

VectorFunctionCAP

__CPP_BasicSimAnnealerRepacker__

__CPP_DenseIGRepacker__

__CPP_DoubleDenseIGRepacker__

__CPP_DynamicAggregateFunction__

__CPP_EntityFuncExpressionCreator__

__CPP_ExpExpression__

__CPP_FASTER_IG_Repacker__

__CPP_InSetExpression__

__CPP_IterativeVectorExpression__

__CPP_LnExpression__

__CPP_MultistateAggregateFunction__

__CPP_MultistateFitnessFunction__

__CPP_NPDPropCalculatorCreator__

__CPP_NPDPropCalculator__

__CPP_PowExpression__

__CPP_QuickRepacker__

__CPP_SurrogateVariableExpression__

__CPP_VMaxBy__

__CPP_VMax__

__CPP_VMinBy__

__CPP_VMin__

__CPP_VariableVectorExpression__

__CPP_VectorExpressionCreator__

__CPP_VectorExpression__

Functions

[hide private]

create_entity_resfile_contents(...)
create_entity_resfile_contents( (std_istream)resfile, (str)resfile_name, (ResfileContents)entity_resfile_contents, (PackerTask)entity_task, (int)num_entities) -> None : protocols/pack_daemon/util.hh:43

initialize_ga_randomizer_from_entity_task(...)
initialize_ga_randomizer_from_entity_task( (__CPP_PositionSpecificRandomizer__)rand, (PackerTask)entity_task) -> None : protocols/pack_daemon/util.hh:58

initialize_task_from_entity_resfile_and_secondary_resfile(...)
initialize_task_from_entity_resfile_and_secondary_resfile( (Pose)pose, (EntityCorrespondence)ec, (ResfileContents)entity_resfile_contents, (ResfileContents)secondary_resfile_contents, (PackerTask)task) -> None : protocols/pack_daemon/util.hh:52

Variables

[hide private]

__package__ = None

add_daemon = rosetta.protocols.pack_daemon._protocols_pack_dae...

discard_old_entity = rosetta.protocols.pack_daemon._protocols_...

error_message = rosetta.protocols.pack_daemon._protocols_pack_...

evaluate_entity = rosetta.protocols.pack_daemon._protocols_pac...

geneate_pose_from_old_state = rosetta.protocols.pack_daemon._p...

keep_rotamer_assignment_for_last_entity = rosetta.protocols.pa...

n_daemon_set_messages = rosetta.protocols.pack_daemon._protoco...

spin_down = rosetta.protocols.pack_daemon._protocols_pack_daem...

success_message = rosetta.protocols.pack_daemon._protocols_pac...

Function Details

[hide private]

create_entity_resfile_contents(...)


create_entity_resfile_contents( (std_istream)resfile, (str)resfile_name, (ResfileContents)entity_resfile_contents, (PackerTask)entity_task, (int)num_entities) -> None :
    protocols/pack_daemon/util.hh:43

    C++ signature :
        void create_entity_resfile_contents(std::istream {lvalue},std::string,boost::shared_ptr<core::pack::task::ResfileContents> {lvalue},boost::shared_ptr<core::pack::task::PackerTask> {lvalue},unsigned long {lvalue})

initialize_ga_randomizer_from_entity_task(...)


initialize_ga_randomizer_from_entity_task( (__CPP_PositionSpecificRandomizer__)rand, (PackerTask)entity_task) -> None :
    protocols/pack_daemon/util.hh:58

    C++ signature :
        void initialize_ga_randomizer_from_entity_task(boost::shared_ptr<protocols::genetic_algorithm::PositionSpecificRandomizer>,boost::shared_ptr<core::pack::task::PackerTask>)

initialize_task_from_entity_resfile_and_secondary_resfile(...)


initialize_task_from_entity_resfile_and_secondary_resfile( (Pose)pose, (EntityCorrespondence)ec, (ResfileContents)entity_resfile_contents, (ResfileContents)secondary_resfile_contents, (PackerTask)task) -> None :
    protocols/pack_daemon/util.hh:52

    C++ signature :
        void initialize_task_from_entity_resfile_and_secondary_resfile(core::pose::Pose,boost::shared_ptr<protocols::pack_daemon::EntityCorrespondence const>,core::pack::task::ResfileContents,core::pack::task::ResfileContents,boost::shared_ptr<core::pack::task::PackerTask>)

Variables Details

[hide private]

add_daemon

Value:

rosetta.protocols.pack_daemon._protocols_pack_daemon_.DaemonSetMessage
.add_daemon

discard_old_entity

Value:

rosetta.protocols.pack_daemon._protocols_pack_daemon_.DaemonSetMessage
.discard_old_entity

error_message

Value:

rosetta.protocols.pack_daemon._protocols_pack_daemon_.DaemonSetMessage
.error_message

evaluate_entity

Value:

rosetta.protocols.pack_daemon._protocols_pack_daemon_.DaemonSetMessage
.evaluate_entity

geneate_pose_from_old_state

Value:

rosetta.protocols.pack_daemon._protocols_pack_daemon_.DaemonSetMessage
.geneate_pose_from_old_state

keep_rotamer_assignment_for_last_entity

Value:

rosetta.protocols.pack_daemon._protocols_pack_daemon_.DaemonSetMessage
.keep_rotamer_assignment_for_last_entity

n_daemon_set_messages

Value:

rosetta.protocols.pack_daemon._protocols_pack_daemon_.DaemonSetMessage
.n_daemon_set_messages

spin_down

Value:

rosetta.protocols.pack_daemon._protocols_pack_daemon_.DaemonSetMessage
.spin_down

success_message

Value:

rosetta.protocols.pack_daemon._protocols_pack_daemon_.DaemonSetMessage
.success_message