Package rosetta :: Package core :: Package id :: Module _core_id_
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Module _core_id_

Classes [hide private]
  AtomID
////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////// Atom identifier class.
  AtomIDAP
  AtomIDCAP
  AtomID_Map_AtomID
core/id/AtomID_Map.hh:507
  AtomID_Map_AtomIDAP
  AtomID_Map_AtomIDCAP
  AtomID_Map_Real
core/id/AtomID_Map.hh:506
  AtomID_Map_RealAP
  AtomID_Map_RealCAP
  AtomID_Map_T_bool_T
Map from Atom identifiers to contained values class
  AtomID_Map_T_bool_TAP
  AtomID_Map_T_bool_TCAP
  AtomID_Map_T_core_id_AtomID_T
Map from Atom identifiers to contained values class
  AtomID_Map_T_core_id_AtomID_TAP
  AtomID_Map_T_core_id_AtomID_TCAP
  AtomID_Map_T_double_T
Map from Atom identifiers to contained values class
  AtomID_Map_T_double_TAP
  AtomID_Map_T_double_TCAP
  AtomID_Map_T_numeric_xyzVector_T_double_T__T
Map from Atom identifiers to contained values class
  AtomID_Map_T_numeric_xyzVector_T_double_T__TAP
  AtomID_Map_T_numeric_xyzVector_T_double_T__TCAP
  AtomID_Map_bool
core/id/AtomID_Map.hh:505
  AtomID_Map_boolAP
  AtomID_Map_boolCAP
  BondID
////////////////////////////////////////////////////////////////////////////...
  BondIDAP
  BondIDCAP
  CacheableAtomID_MapVector
AtomID_Map< xyzVector< Real > >
  CacheableAtomID_MapVectorAP
  CacheableAtomID_MapVectorCAP
  DOF_ID
Kinematics DOF identifier class
  DOF_IDAP
  DOF_IDCAP
  DOF_ID_Range
Kinematics DOF identifier (with range) class
  DOF_ID_RangeAP
  DOF_ID_RangeCAP
  DOF_Type
DOF (degrees of freedom) type
  EXCN_AtomNotFound
core/id/Exceptions.hh:31
  EXCN_AtomNotFoundAP
  EXCN_AtomNotFoundCAP
  JumpID
/brief Torsion identifier class...
  JumpIDAP
  JumpIDCAP
  NamedAtomID
//////////////////////////////////////////////////////////////////////////...
  NamedAtomIDAP
  NamedAtomIDCAP
  NamedAtomID_Map_NamedAtomID
core/id/NamedAtomID_Map.hh:475
  NamedAtomID_Map_NamedAtomIDAP
  NamedAtomID_Map_NamedAtomIDCAP
  NamedAtomID_Map_T_core_id_NamedAtomID_T
Map from Atom identifiers to contained values class
  NamedAtomID_Map_T_core_id_NamedAtomID_TAP
  NamedAtomID_Map_T_core_id_NamedAtomID_TCAP
  NamedStubID
////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////
  NamedStubIDAP
  NamedStubIDCAP
  SequenceMapping
core/id/SequenceMapping.hh:37
  SequenceMappingAP
  SequenceMappingCAP
  StubID
////////////////////////////////////////////////////////////////////////////
  StubIDAP
  StubIDCAP
  TorsionID
Torsion identifier class Consider a few examples to get a better picture for how torsions are uniquely identified: @code #include <core/id/types.hh> using core::id::BB; TorsionID(253, BB, 1) // Phi backbone torsion of residue 253.
  TorsionIDAP
  TorsionIDCAP
  TorsionID_Range
Kinematics DOF identifier (with range) class
  TorsionID_RangeAP
  TorsionID_RangeCAP
  TorsionType
Torsion type -- used in the TorsionID class
  __CPP_CacheableAtomID_MapVector__
Functions [hide private]
 
DOF_type_is_rb(...)
DOF_type_is_rb( (DOF_Type)t) -> bool : //////////////////////////////////////////////////////////////////////////
 
combine_sequence_mappings(...)
combine_sequence_mappings( (SequenceMapping)smap, (SequenceMapping)smap_to_add) -> None : combine the input sequence mappings into one utility function added by flo, feb 2011
 
get_rb_number(...)
get_rb_number( (DOF_Type)t) -> int : //////////////////////////////////////////////////////////////////////////
 
get_rb_type(...)
get_rb_type( (int)k) -> DOF_Type : //////////////////////////////////////////////////////////////////////////
 
to_string(...)
to_string( (TorsionType)type) -> str : core/id/types.hh:87
Variables [hide private]
  BB = rosetta.core.id._core_id_.TorsionType.BB
  CHI = rosetta.core.id._core_id_.TorsionType.CHI
  D = rosetta.core.id._core_id_.DOF_Type.D
  JUMP = rosetta.core.id._core_id_.TorsionType.JUMP
  NU = rosetta.core.id._core_id_.TorsionType.NU
  PHI = rosetta.core.id._core_id_.DOF_Type.PHI
  RB1 = rosetta.core.id._core_id_.DOF_Type.RB1
  RB2 = rosetta.core.id._core_id_.DOF_Type.RB2
  RB3 = rosetta.core.id._core_id_.DOF_Type.RB3
  RB4 = rosetta.core.id._core_id_.DOF_Type.RB4
  RB5 = rosetta.core.id._core_id_.DOF_Type.RB5
  RB6 = rosetta.core.id._core_id_.DOF_Type.RB6
  THETA = rosetta.core.id._core_id_.DOF_Type.THETA
  __package__ = None
Function Details [hide private]

DOF_type_is_rb(...)

 

DOF_type_is_rb( (DOF_Type)t) -> bool :
    //////////////////////////////////////////////////////////////////////////
    

    C++ signature :
        bool DOF_type_is_rb(core::id::DOF_Type)

combine_sequence_mappings(...)

 

combine_sequence_mappings( (SequenceMapping)smap, (SequenceMapping)smap_to_add) -> None :
    combine the input sequence mappings into one
    utility function added by flo, feb 2011
    

    C++ signature :
        void combine_sequence_mappings(core::id::SequenceMapping {lvalue},core::id::SequenceMapping)

combine_sequence_mappings( (object)smaps) -> SequenceMapping :
    make one sequence mapping out of all input ones
    utility function added by flo, feb 2011
    

    C++ signature :
        boost::shared_ptr<core::id::SequenceMapping> combine_sequence_mappings(utility::vector1<core::id::SequenceMapping, std::allocator<core::id::SequenceMapping> >)

get_rb_number(...)

 

get_rb_number( (DOF_Type)t) -> int :
    //////////////////////////////////////////////////////////////////////////
    

    C++ signature :
        unsigned long get_rb_number(core::id::DOF_Type)

get_rb_type(...)

 

get_rb_type( (int)k) -> DOF_Type :
    //////////////////////////////////////////////////////////////////////////
    

    C++ signature :
        core::id::DOF_Type get_rb_type(unsigned long)

to_string(...)

 

to_string( (TorsionType)type) -> str :
    core/id/types.hh:87

    C++ signature :
        std::string to_string(core::id::TorsionType)

to_string( (DOF_Type)type) -> str :
    core/id/types.hh:49

    C++ signature :
        std::string to_string(core::id::DOF_Type)