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        AtomID ////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////// Atom identifier class.  | 
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| AtomIDAP | |||
| AtomIDCAP | |||
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        AtomID_Map_AtomID core/id/AtomID_Map.hh:507  | 
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| AtomID_Map_AtomIDAP | |||
| AtomID_Map_AtomIDCAP | |||
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        AtomID_Map_Real core/id/AtomID_Map.hh:506  | 
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| AtomID_Map_RealAP | |||
| AtomID_Map_RealCAP | |||
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        AtomID_Map_T_bool_T Map from Atom identifiers to contained values class  | 
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| AtomID_Map_T_bool_TAP | |||
| AtomID_Map_T_bool_TCAP | |||
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        AtomID_Map_T_core_id_AtomID_T Map from Atom identifiers to contained values class  | 
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| AtomID_Map_T_core_id_AtomID_TAP | |||
| AtomID_Map_T_core_id_AtomID_TCAP | |||
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        AtomID_Map_T_double_T Map from Atom identifiers to contained values class  | 
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| AtomID_Map_T_double_TAP | |||
| AtomID_Map_T_double_TCAP | |||
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        AtomID_Map_T_numeric_xyzVector_T_double_T__T Map from Atom identifiers to contained values class  | 
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| AtomID_Map_T_numeric_xyzVector_T_double_T__TAP | |||
| AtomID_Map_T_numeric_xyzVector_T_double_T__TCAP | |||
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        AtomID_Map_bool core/id/AtomID_Map.hh:505  | 
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| AtomID_Map_boolAP | |||
| AtomID_Map_boolCAP | |||
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        BondID ////////////////////////////////////////////////////////////////////////////...  | 
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| BondIDAP | |||
| BondIDCAP | |||
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        CacheableAtomID_MapVector AtomID_Map< xyzVector< Real > >  | 
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| CacheableAtomID_MapVectorAP | |||
| CacheableAtomID_MapVectorCAP | |||
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        DOF_ID Kinematics DOF identifier class  | 
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| DOF_IDAP | |||
| DOF_IDCAP | |||
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        DOF_ID_Range Kinematics DOF identifier (with range) class  | 
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| DOF_ID_RangeAP | |||
| DOF_ID_RangeCAP | |||
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        DOF_Type DOF (degrees of freedom) type  | 
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        EXCN_AtomNotFound core/id/Exceptions.hh:31  | 
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| EXCN_AtomNotFoundAP | |||
| EXCN_AtomNotFoundCAP | |||
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        JumpID /brief Torsion identifier class...  | 
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| JumpIDAP | |||
| JumpIDCAP | |||
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        NamedAtomID //////////////////////////////////////////////////////////////////////////...  | 
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| NamedAtomIDAP | |||
| NamedAtomIDCAP | |||
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        NamedAtomID_Map_NamedAtomID core/id/NamedAtomID_Map.hh:475  | 
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| NamedAtomID_Map_NamedAtomIDAP | |||
| NamedAtomID_Map_NamedAtomIDCAP | |||
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        NamedAtomID_Map_T_core_id_NamedAtomID_T Map from Atom identifiers to contained values class  | 
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| NamedAtomID_Map_T_core_id_NamedAtomID_TAP | |||
| NamedAtomID_Map_T_core_id_NamedAtomID_TCAP | |||
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        NamedStubID ////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////////////////////  | 
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| NamedStubIDAP | |||
| NamedStubIDCAP | |||
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        SequenceMapping core/id/SequenceMapping.hh:37  | 
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| SequenceMappingAP | |||
| SequenceMappingCAP | |||
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        StubID ////////////////////////////////////////////////////////////////////////////  | 
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| StubIDAP | |||
| StubIDCAP | |||
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        TorsionID Torsion identifier class Consider a few examples to get a better picture for how torsions are uniquely identified: @code #include <core/id/types.hh> using core::id::BB; TorsionID(253, BB, 1) // Phi backbone torsion of residue 253.  | 
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| TorsionIDAP | |||
| TorsionIDCAP | |||
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        TorsionID_Range Kinematics DOF identifier (with range) class  | 
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| TorsionID_RangeAP | |||
| TorsionID_RangeCAP | |||
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        TorsionType Torsion type -- used in the TorsionID class  | 
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| __CPP_CacheableAtomID_MapVector__ | |||
    
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DOF_type_is_rb( (DOF_Type)t) -> bool :
    //////////////////////////////////////////////////////////////////////////
    
    C++ signature :
        bool DOF_type_is_rb(core::id::DOF_Type)
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combine_sequence_mappings( (SequenceMapping)smap, (SequenceMapping)smap_to_add) -> None :
    combine the input sequence mappings into one
    utility function added by flo, feb 2011
    
    C++ signature :
        void combine_sequence_mappings(core::id::SequenceMapping {lvalue},core::id::SequenceMapping)
combine_sequence_mappings( (object)smaps) -> SequenceMapping :
    make one sequence mapping out of all input ones
    utility function added by flo, feb 2011
    
    C++ signature :
        boost::shared_ptr<core::id::SequenceMapping> combine_sequence_mappings(utility::vector1<core::id::SequenceMapping, std::allocator<core::id::SequenceMapping> >)
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get_rb_number( (DOF_Type)t) -> int :
    //////////////////////////////////////////////////////////////////////////
    
    C++ signature :
        unsigned long get_rb_number(core::id::DOF_Type)
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get_rb_type( (int)k) -> DOF_Type :
    //////////////////////////////////////////////////////////////////////////
    
    C++ signature :
        core::id::DOF_Type get_rb_type(unsigned long)
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to_string( (TorsionType)type) -> str :
    core/id/types.hh:87
    C++ signature :
        std::string to_string(core::id::TorsionType)
to_string( (DOF_Type)type) -> str :
    core/id/types.hh:49
    C++ signature :
        std::string to_string(core::id::DOF_Type)
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