Package rosetta :: Package protocols :: Package forge :: Package build :: Module _protocols_forge_build_'

Module _protocols_forge_build_'

Classes

Bridge
connect two contiguous but disjoint sections of a Pose into one continuous section Anchor residues [i,j] to bridge must be adjacent to each other in the Pose (i+1 = j) and adjacent to a cutpoint.

BridgeAP

BridgeCAP

BuildInstruction
tracks modifications to be made and is capable of making residue length changes on a Pose

BuildInstructionAP

BuildInstructionCAP

BuildManager
a container for managing BuildInstructions Compatibility checks wrt dependencies currently do not exist.

BuildManagerAP

BuildManagerCAP

ConnectRight
instruction to connect one Pose onto the right side of another Denote pose_left = [a,b] and pose_right = [c,d] and the newly connected pose_left + pose_right = pose_total = [a,d].

ConnectRightAP

ConnectRightCAP

CountFromLeft
count starting from interval().left in a BuildInstruction

CountFromLeftAP

CountFromLeftCAP

GrowLeft
instruction to create an n-side extension Use this for n-side insertions, but typically not n-terminal extensions unless necessary.

GrowLeftAP

GrowLeftCAP

GrowRight
instruction to create a c-side extension @remarks Use this for c-side insertions but typically not c-terminal extensions unless necessary.

GrowRightAP

GrowRightCAP

Interval
simple struct defining a closed interval of residues [left, right] where left <= right

IntervalAP

IntervalCAP

RelativeConnectRight
version of ConnectRight instruction that depends upon results from another BuildInstruction

RelativeConnectRightAP

RelativeConnectRightCAP

RelativeSequencePosition
computes a position wrt values in given BuildInstruction

RelativeSequencePositionAP

RelativeSequencePositionCAP

SegmentInsert
insert an external segment flanked by new regions @remarks Similar to SegmentRebuild, but with the addition of a defined segment located in the modified region.

SegmentInsertAP

SegmentInsertCAP

SegmentRebuild
instruction to rebuild a segment @remarks Handles both cut based rebuilding (i.e.

SegmentRebuildAP

SegmentRebuildCAP

SegmentSwap
instruction to swap a segment with an external segment

SegmentSwapAP

SegmentSwapCAP

SingletonBase_T_core_chemical_ChemicalManager_T
SingletonBase is meant to serve as a base class for singleton classes in Rosetta handling the initialization of the singleton in a thread-safe way.

SingletonBase_T_core_chemical_ChemicalManager_TAP

SingletonBase_T_core_chemical_ChemicalManager_TCAP

__CPP_BuildManager__

__CPP_CountFromLeft__

__CPP_RelativeSequencePosition__

Variables

[hide private]

__package__ = None