Module _protocols_stepwise_legacy_modeler_protein_

Classes

[hide private]

SingletonBase_T_core_chemical_ChemicalManager_T
SingletonBase is meant to serve as a base class for singleton classes in Rosetta handling the initialization of the singleton in a thread-safe way.

SingletonBase_T_core_chemical_ChemicalManager_TAP

SingletonBase_T_core_chemical_ChemicalManager_TCAP

StepWiseProteinMinimizer
////////////////////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////////////////////

StepWiseProteinMinimizerAP

StepWiseProteinMinimizerCAP

StepWiseProteinPoseSetup
////////////////////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////////////////////

StepWiseProteinPoseSetupAP

StepWiseProteinPoseSetupCAP

__CPP_StepWiseProteinMinimizer__

__CPP_StepWiseProteinPoseSetup__

Functions

[hide private]

convert_to_working_res(...)
convert_to_working_res( (vector1_Size)res_vector, (vector1_Size)working_res) -> vector1_Size : protocols/stepwise/legacy/modeler/protein/util.hh:37

get_pretend_phi_explicit(...)
get_pretend_phi_explicit( (Pose)pose, (int)res) -> float : protocols/stepwise/legacy/modeler/protein/util.hh:60

get_pretend_psi_explicit(...)
get_pretend_psi_explicit( (Pose)pose, (int)res) -> float : protocols/stepwise/legacy/modeler/protein/util.hh:58

is_close_chain_break(...)
is_close_chain_break( (Pose)pose) -> bool : protocols/stepwise/legacy/modeler/protein/util.hh:63

output_pose_list(...)
output_pose_list( (vector1_PoseOP)pose_list, (Pose)native_pose, (str)silent_file, (vector1_Size)working_calc_rms_res [, (bool)overwrite=True]) -> None : protocols/stepwise/legacy/modeler/protein/util.hh:44

output_silent_struct(...)
output_silent_struct( (Pose)pose, (Pose)native_pose_op, (str)silent_file, (str)tag, (SilentFileData)sfd_in, (vector1_Size)calc_rms_res) -> None : protocols/stepwise/legacy/modeler/protein/util.hh:56

Variables

[hide private]

__package__ = None

Function Details

[hide private]

convert_to_working_res(...)


convert_to_working_res( (vector1_Size)res_vector, (vector1_Size)working_res) -> vector1_Size :
    protocols/stepwise/legacy/modeler/protein/util.hh:37

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > convert_to_working_res(utility::vector1<unsigned long, std::allocator<unsigned long> >,utility::vector1<unsigned long, std::allocator<unsigned long> >)

get_pretend_phi_explicit(...)


get_pretend_phi_explicit( (Pose)pose, (int)res) -> float :
    protocols/stepwise/legacy/modeler/protein/util.hh:60

    C++ signature :
        double get_pretend_phi_explicit(core::pose::Pose,unsigned long)

get_pretend_psi_explicit(...)


get_pretend_psi_explicit( (Pose)pose, (int)res) -> float :
    protocols/stepwise/legacy/modeler/protein/util.hh:58

    C++ signature :
        double get_pretend_psi_explicit(core::pose::Pose,unsigned long)

is_close_chain_break(...)


is_close_chain_break( (Pose)pose) -> bool :
    protocols/stepwise/legacy/modeler/protein/util.hh:63

    C++ signature :
        bool is_close_chain_break(core::pose::Pose)

output_pose_list(...)


output_pose_list( (vector1_PoseOP)pose_list, (Pose)native_pose, (str)silent_file, (vector1_Size)working_calc_rms_res [, (bool)overwrite=True]) -> None :
    protocols/stepwise/legacy/modeler/protein/util.hh:44

    C++ signature :
        void output_pose_list(utility::vector1<boost::shared_ptr<core::pose::Pose>, std::allocator<boost::shared_ptr<core::pose::Pose> > >,boost::shared_ptr<core::pose::Pose const>,std::string,utility::vector1<unsigned long, std::allocator<unsigned long> > [,bool=True])

output_silent_struct(...)


output_silent_struct( (Pose)pose, (Pose)native_pose_op, (str)silent_file, (str)tag, (SilentFileData)sfd_in, (vector1_Size)calc_rms_res) -> None :
    protocols/stepwise/legacy/modeler/protein/util.hh:56

    C++ signature :
        void output_silent_struct(core::pose::Pose,boost::shared_ptr<core::pose::Pose const>,std::string,std::string,boost::shared_ptr<core::io::silent::SilentFileData>,utility::vector1<unsigned long, std::allocator<unsigned long> >)

output_silent_struct( (Pose)pose, (Pose)native_pose_op, (str)silent_file, (str)tag [, (SilentFileData)sfd_in=0]) -> None :
    protocols/stepwise/legacy/modeler/protein/util.hh:49

    C++ signature :
        void output_silent_struct(core::pose::Pose,boost::shared_ptr<core::pose::Pose const>,std::string,std::string [,boost::shared_ptr<core::io::silent::SilentFileData>=0])