Package rosetta :: Package protocols :: Package antibody

[frames] | no frames]

Package antibody

source code

Submodules

[hide private]

Variables

[hide private]

AHO_Scheme = rosetta.protocols.antibody._protocols_antibody_.A...

AntibodyNumberingSchemeEnum_start = rosetta.protocols.antibody...

AntibodyNumberingSchemeEnum_total = rosetta.protocols.antibody...

AntibodyRegionEnum_start = rosetta.protocols.antibody._protoco...

AntibodyRegionEnum_total = rosetta.protocols.antibody._protoco...

Aroop = rosetta.protocols.antibody._protocols_antibody_.CDRDef...

CDRDefinitionEnum_start = rosetta.protocols.antibody._protocol...

CDRDefinitionEnum_total = rosetta.protocols.antibody._protocol...

CDRLandmarkEnum_total = rosetta.protocols.antibody._protocols_...

CDRNameEnum_proto_start = rosetta.protocols.antibody._protocol...

CDRNameEnum_proto_total = rosetta.protocols.antibody._protocol...

CDRNameEnum_start = rosetta.protocols.antibody._protocols_anti...

CDRNameEnum_total = rosetta.protocols.antibody._protocols_anti...

Chothia = rosetta.protocols.antibody._protocols_antibody_.CDRD...

Chothia_Scheme = rosetta.protocols.antibody._protocols_antibod...

Enhanced_Chothia_Scheme = rosetta.protocols.antibody._protocol...

Extended = rosetta.protocols.antibody._protocols_antibody_.H3B...

H3BaseTypeEnum_start = rosetta.protocols.antibody._protocols_a...

H3BaseTypeEnum_total = rosetta.protocols.antibody._protocols_a...

H_chain_last_loop = rosetta.protocols.antibody._protocols_anti...

IMGT_Scheme = rosetta.protocols.antibody._protocols_antibody_....

Kabat = rosetta.protocols.antibody._protocols_antibody_.CDRDef...

Kabat_Scheme = rosetta.protocols.antibody._protocols_antibody_...

Kinked = rosetta.protocols.antibody._protocols_antibody_.H3Bas...

L_chain_last_loop = rosetta.protocols.antibody._protocols_anti...

LightChainTypeEnum_start = rosetta.protocols.antibody._protoco...

LightChainTypeEnum_total = rosetta.protocols.antibody._protoco...

Martin = rosetta.protocols.antibody._protocols_antibody_.CDRDe...

NONE = rosetta.protocols.antibody._protocols_antibody_.Antibod...

Neutral = rosetta.protocols.antibody._protocols_antibody_.H3Ba...

North = rosetta.protocols.antibody._protocols_antibody_.CDRDef...

PackingAngleEnum_start = rosetta.protocols.antibody._protocols...

PackingAngleEnum_total = rosetta.protocols.antibody._protocols...

Unknown = rosetta.protocols.antibody._protocols_antibody_.H3Ba...

VH_sheet_1 = rosetta.protocols.antibody._protocols_antibody_.P...

VH_sheet_2 = rosetta.protocols.antibody._protocols_antibody_.P...

VL_sheet_1 = rosetta.protocols.antibody._protocols_antibody_.P...

VL_sheet_2 = rosetta.protocols.antibody._protocols_antibody_.P...

__package__ = 'rosetta.protocols.antibody'

__warningregistry__ = {('to-Python converter for boost::shared...

antigen_region = rosetta.protocols.antibody._protocols_antibod...

camelid_last_loop = rosetta.protocols.antibody._protocols_anti...

cdr_end = rosetta.protocols.antibody._protocols_antibody_.CDRL...

cdr_region = rosetta.protocols.antibody._protocols_antibody_.A...

cdr_start = rosetta.protocols.antibody._protocols_antibody_.CD...

framework_region = rosetta.protocols.antibody._protocols_antib...

h1 = rosetta.protocols.antibody._protocols_antibody_.CDRNameEn...

h2 = rosetta.protocols.antibody._protocols_antibody_.CDRNameEn...

h3 = rosetta.protocols.antibody._protocols_antibody_.CDRNameEn...

h4 = rosetta.protocols.antibody._protocols_antibody_.CDRNameEn...

kappa = rosetta.protocols.antibody._protocols_antibody_.LightC...

l1 = rosetta.protocols.antibody._protocols_antibody_.CDRNameEn...

l2 = rosetta.protocols.antibody._protocols_antibody_.CDRNameEn...

l3 = rosetta.protocols.antibody._protocols_antibody_.CDRNameEn...

l4 = rosetta.protocols.antibody._protocols_antibody_.CDRNameEn...

lambda = rosetta.protocols.antibody._protocols_antibody_.Light...

lambda6 = rosetta.protocols.antibody._protocols_antibody_.Ligh...

num_cdr_loops = rosetta.protocols.antibody._protocols_antibody...

proto_h4 = rosetta.protocols.antibody._protocols_antibody_.CDR...

proto_l4 = rosetta.protocols.antibody._protocols_antibody_.CDR...

start_cdr_loop = rosetta.protocols.antibody._protocols_antibod...

unknown = rosetta.protocols.antibody._protocols_antibody_.Ligh...

Variables Details

[hide private]

AHO_Scheme

Value:

rosetta.protocols.antibody._protocols_antibody_.AntibodyNumberingSchem
eEnum.AHO_Scheme

AntibodyNumberingSchemeEnum_start

Value:

rosetta.protocols.antibody._protocols_antibody_.AntibodyNumberingSchem
eEnum.AntibodyNumberingSchemeEnum_start

AntibodyNumberingSchemeEnum_total

Value:

rosetta.protocols.antibody._protocols_antibody_.AntibodyNumberingSchem
eEnum.AntibodyNumberingSchemeEnum_total

AntibodyRegionEnum_start

Value:

rosetta.protocols.antibody._protocols_antibody_.AntibodyRegionEnum.Ant
ibodyRegionEnum_start

AntibodyRegionEnum_total

Value:

rosetta.protocols.antibody._protocols_antibody_.AntibodyRegionEnum.Ant
ibodyRegionEnum_total

Aroop

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRDefinitionEnum.Aroo
p

CDRDefinitionEnum_start

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRDefinitionEnum.CDRD
efinitionEnum_start

CDRDefinitionEnum_total

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRDefinitionEnum.CDRD
efinitionEnum_total

CDRLandmarkEnum_total

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRLandmarkEnum.CDRLan
dmarkEnum_total

CDRNameEnum_proto_start

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRNameEnum.CDRNameEnu
m_proto_start

CDRNameEnum_proto_total

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRNameEnum.CDRNameEnu
m_proto_total

CDRNameEnum_start

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRNameEnum.CDRNameEnu
m_start

CDRNameEnum_total

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRNameEnum.CDRNameEnu
m_total

Chothia

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRDefinitionEnum.Chot
hia

Chothia_Scheme

Value:

rosetta.protocols.antibody._protocols_antibody_.AntibodyNumberingSchem
eEnum.Chothia_Scheme

Enhanced_Chothia_Scheme

Value:

rosetta.protocols.antibody._protocols_antibody_.AntibodyNumberingSchem
eEnum.Enhanced_Chothia_Scheme

Extended

Value:

rosetta.protocols.antibody._protocols_antibody_.H3BaseTypeEnum.Extende
d

H3BaseTypeEnum_start

Value:

rosetta.protocols.antibody._protocols_antibody_.H3BaseTypeEnum.H3BaseT
ypeEnum_start

H3BaseTypeEnum_total

Value:

rosetta.protocols.antibody._protocols_antibody_.H3BaseTypeEnum.H3BaseT
ypeEnum_total

H_chain_last_loop

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRNameEnum.H_chain_la
st_loop

IMGT_Scheme

Value:

rosetta.protocols.antibody._protocols_antibody_.AntibodyNumberingSchem
eEnum.IMGT_Scheme

Kabat

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRDefinitionEnum.Kaba
t

Kabat_Scheme

Value:

rosetta.protocols.antibody._protocols_antibody_.AntibodyNumberingSchem
eEnum.Kabat_Scheme

Kinked

Value:

rosetta.protocols.antibody._protocols_antibody_.H3BaseTypeEnum.Kinked

L_chain_last_loop

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRNameEnum.L_chain_la
st_loop

LightChainTypeEnum_start

Value:

rosetta.protocols.antibody._protocols_antibody_.LightChainTypeEnum.Lig
htChainTypeEnum_start

LightChainTypeEnum_total

Value:

rosetta.protocols.antibody._protocols_antibody_.LightChainTypeEnum.Lig
htChainTypeEnum_total

Martin

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRDefinitionEnum.Mart
in

NONE

Value:

rosetta.protocols.antibody._protocols_antibody_.AntibodyNumberingSchem
eEnum.NONE

Neutral

Value:

rosetta.protocols.antibody._protocols_antibody_.H3BaseTypeEnum.Neutral

North

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRDefinitionEnum.Nort
h

PackingAngleEnum_start

Value:

rosetta.protocols.antibody._protocols_antibody_.PackingAngleEnum.Packi
ngAngleEnum_start

PackingAngleEnum_total

Value:

rosetta.protocols.antibody._protocols_antibody_.PackingAngleEnum.Packi
ngAngleEnum_total

Unknown

Value:

rosetta.protocols.antibody._protocols_antibody_.H3BaseTypeEnum.Unknown

VH_sheet_1

Value:

rosetta.protocols.antibody._protocols_antibody_.PackingAngleEnum.VH_sh
eet_1

VH_sheet_2

Value:

rosetta.protocols.antibody._protocols_antibody_.PackingAngleEnum.VH_sh
eet_2

VL_sheet_1

Value:

rosetta.protocols.antibody._protocols_antibody_.PackingAngleEnum.VL_sh
eet_1

VL_sheet_2

Value:

rosetta.protocols.antibody._protocols_antibody_.PackingAngleEnum.VL_sh
eet_2

warningregistry

Value:

{('to-Python converter for boost::shared_ptr<utility::SingletonBase<co
re::chemical::ChemicalManager> > already registered; second conversion
 method ignored.',
  <type 'exceptions.RuntimeWarning'>,
  2): True,
 ('to-Python converter for boost::weak_ptr<utility::SingletonBase<core
::chemical::ChemicalManager> > already registered; second conversion m
ethod ignored.',
...

antigen_region

Value:

rosetta.protocols.antibody._protocols_antibody_.AntibodyRegionEnum.ant
igen_region

camelid_last_loop

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRNameEnum.camelid_la
st_loop

cdr_end

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRLandmarkEnum.cdr_en
d

cdr_region

Value:

rosetta.protocols.antibody._protocols_antibody_.AntibodyRegionEnum.cdr
_region

cdr_start

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRLandmarkEnum.cdr_st
art

framework_region

Value:

rosetta.protocols.antibody._protocols_antibody_.AntibodyRegionEnum.fra
mework_region

h1

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRNameEnum.h1

h2

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRNameEnum.h2

h3

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRNameEnum.h3

h4

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRNameEnum.h4

kappa

Value:

rosetta.protocols.antibody._protocols_antibody_.LightChainTypeEnum.kap
pa

l1

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRNameEnum.l1

l2

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRNameEnum.l2

l3

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRNameEnum.l3

l4

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRNameEnum.l4

lambda

Value:

rosetta.protocols.antibody._protocols_antibody_.LightChainTypeEnum.lam
bda

lambda6

Value:

rosetta.protocols.antibody._protocols_antibody_.LightChainTypeEnum.lam
bda6

num_cdr_loops

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRNameEnum.num_cdr_lo
ops

proto_h4

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRNameEnum.proto_h4

proto_l4

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRNameEnum.proto_l4

start_cdr_loop

Value:

rosetta.protocols.antibody._protocols_antibody_.CDRNameEnum.start_cdr_
loop

unknown

Value:

rosetta.protocols.antibody._protocols_antibody_.LightChainTypeEnum.unk
nown