Package rosetta :: Package protocols :: Package backrub :: Module _protocols_backrub_
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Module _protocols_backrub_

Classes [hide private]
  BackrubMover
class for applying backrub moves to arbitrary protein segments
  BackrubMoverAP
  BackrubMoverCAP
  BackrubMoverCreator
protocols/backrub/BackrubMoverCreator.hh:23
  BackrubMoverCreatorAP
  BackrubMoverCreatorCAP
  BackrubProtocol
protocols/backrub/BackrubProtocol.hh:43
  BackrubProtocolAP
  BackrubProtocolCAP
  BackrubProtocolCreator
protocols/backrub/BackrubProtocolCreator.hh:24
  BackrubProtocolCreatorAP
  BackrubProtocolCreatorCAP
  BackrubSegment
a class for holind information about individual backrub segments
  BackrubSegmentAP
  BackrubSegmentCAP
  BackrubSidechainMover
protocols/backrub/BackrubSidechainMover.hh:41
  BackrubSidechainMoverAP
  BackrubSidechainMoverCAP
  BackrubSidechainMoverCreator
protocols/backrub/BackrubSidechainMoverCreator.hh:23
  BackrubSidechainMoverCreatorAP
  BackrubSidechainMoverCreatorCAP
  SingletonBase_T_core_chemical_ChemicalManager_T
SingletonBase is meant to serve as a base class for singleton classes in Rosetta handling the initialization of the singleton in a thread-safe way.
  SingletonBase_T_core_chemical_ChemicalManager_TAP
  SingletonBase_T_core_chemical_ChemicalManager_TCAP
  __CPP_BackrubMoverCreator__
  __CPP_BackrubMover__
  __CPP_BackrubProtocolCreator__
  __CPP_BackrubProtocol__
  __CPP_BackrubSidechainMoverCreator__
  __CPP_BackrubSidechainMover__
Functions [hide private]
 
append_fold_tree_to_file(...)
append_fold_tree_to_file( (FoldTree)foldtree, (str)file_path) -> None : protocols/backrub/util.hh:35
 
backrub_rotation_angles(...)
backrub_rotation_angles( (object)constants, (float)tau, (float)bondange, (float)torsion1, (float)torsion2) -> None : calculate internal coordinate values for any tau value
 
backrub_rotation_constants(...)
backrub_rotation_constants( (Atom)PM2_atom, (Atom)PM1_atom, (Atom)P_atom, (Atom)PP1_atom, (Atom)PP2_atom, (Atom)REF_atom, (object)constants [, (float)alpha_min=0 [, (float)alpha_max=3.141592653589793 [, (IntervalSet_T_double_T)tau_intervals=0]]]) -> None : calculate constants necessary for calculating internal angles/derivatives
 
get_pivot_residues_from_movemap(...)
get_pivot_residues_from_movemap( (MoveMap)movemap) -> vector1_Size : protocols/backrub/util.hh:41
 
positions_incompatible_with_task(...)
positions_incompatible_with_task( (Pose)pose, (PackerTask)packertask) -> vector1_Size : protocols/backrub/util.hh:38
 
read_fold_tree_from_file(...)
read_fold_tree_from_file( (Pose)pose, (str)filepath) -> bool : protocols/backrub/util.hh:32
Variables [hide private]
  __package__ = None
Function Details [hide private]

append_fold_tree_to_file(...)

 

append_fold_tree_to_file( (FoldTree)foldtree, (str)file_path) -> None :
    protocols/backrub/util.hh:35

    C++ signature :
        void append_fold_tree_to_file(core::kinematics::FoldTree,std::string)

backrub_rotation_angles(...)

 

backrub_rotation_angles( (object)constants, (float)tau, (float)bondange, (float)torsion1, (float)torsion2) -> None :
    calculate internal coordinate values for any tau value
    

    C++ signature :
        void backrub_rotation_angles(utility::vector0<double, std::allocator<double> >,double,double {lvalue},double {lvalue},double {lvalue})

backrub_rotation_constants(...)

 

backrub_rotation_constants( (Atom)PM2_atom, (Atom)PM1_atom, (Atom)P_atom, (Atom)PP1_atom, (Atom)PP2_atom, (Atom)REF_atom, (object)constants [, (float)alpha_min=0 [, (float)alpha_max=3.141592653589793 [, (IntervalSet_T_double_T)tau_intervals=0]]]) -> None :
    calculate constants necessary for calculating internal angles/derivatives
    

    C++ signature :
        void backrub_rotation_constants(boost::shared_ptr<core::kinematics::tree::Atom const>,boost::shared_ptr<core::kinematics::tree::Atom const>,boost::shared_ptr<core::kinematics::tree::Atom const>,boost::shared_ptr<core::kinematics::tree::Atom const>,boost::shared_ptr<core::kinematics::tree::Atom const>,boost::shared_ptr<core::kinematics::tree::Atom const>,utility::vector0<double, std::allocator<double> > {lvalue} [,double=0 [,double=3.141592653589793 [,numeric::IntervalSet<double>*=0]]])

get_pivot_residues_from_movemap(...)

 

get_pivot_residues_from_movemap( (MoveMap)movemap) -> vector1_Size :
    protocols/backrub/util.hh:41

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > get_pivot_residues_from_movemap(boost::shared_ptr<core::kinematics::MoveMap const>)

positions_incompatible_with_task(...)

 

positions_incompatible_with_task( (Pose)pose, (PackerTask)packertask) -> vector1_Size :
    protocols/backrub/util.hh:38

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > positions_incompatible_with_task(core::pose::Pose {lvalue},core::pack::task::PackerTask {lvalue})

read_fold_tree_from_file(...)

 

read_fold_tree_from_file( (Pose)pose, (str)filepath) -> bool :
    protocols/backrub/util.hh:32

    C++ signature :
        bool read_fold_tree_from_file(core::pose::Pose {lvalue},std::string)

read_fold_tree_from_file( (FoldTree)foldtree, (str)filepath) -> bool :
    protocols/backrub/util.hh:29

    C++ signature :
        bool read_fold_tree_from_file(core::kinematics::FoldTree {lvalue},std::string)