BBGaussianMover
the basic class for implementing Gaussian Perturbation of bb "Monte Carlo update for chain molecules: Biased Gaussian steps in torsional space" "The Journal of Chemical Physics, Vol.

BBGaussianMoverAP

BBGaussianMoverCAP

BBGaussianMoverCreator
protocols/simple_moves/BBGaussianMoverCreator.hh:18

BBGaussianMoverCreatorAP

BBGaussianMoverCreatorCAP

BackboneMover
//////////////////////////////////////////////////////////////////////////// BackboneMover class has elements of the MC temperature to do repetitions of bb moves (small, shear, wobble, etc.).

BackboneMoverAP

BackboneMoverCAP

BoltzmannRotamerMover
protocols/simple_moves/BoltzmannRotamerMover.hh:41

BoltzmannRotamerMoverAP

BoltzmannRotamerMoverCAP

BoltzmannRotamerMoverCreator
protocols/simple_moves/BoltzmannRotamerMoverCreator.hh:22

BoltzmannRotamerMoverCreatorAP

BoltzmannRotamerMoverCreatorCAP

ChainGroupDiscriminator
protocols/simple_moves/GreenPacker.hh:177

ChainGroupDiscriminatorAP

ChainGroupDiscriminatorCAP

ChainSplitMover
ChainSplitMover splits a pose into two chains given a cutpoint.

ChainSplitMoverAP

ChainSplitMoverCAP

ChangeAndResetFoldTreeMover
Basic mover used primarily for setting up atomic protocols, especially in generator functions.

ChangeAndResetFoldTreeMoverAP

ChangeAndResetFoldTreeMoverCAP

ChangeAndResetFoldTreeMoverCreator
protocols/simple_moves/ChangeAndResetFoldTreeMoverCreator.hh:23

ChangeAndResetFoldTreeMoverCreatorAP

ChangeAndResetFoldTreeMoverCreatorCAP

ClassicFragmentMover
A FragmentMover that applies uniform sampling of fragments

ClassicFragmentMoverAP

ClassicFragmentMoverCAP

ClearConstraintsMover
protocols/simple_moves/ClearConstraintsMover.hh:22

ClearConstraintsMoverAP

ClearConstraintsMoverCAP

ClearConstraintsMoverCreator
protocols/simple_moves/ClearConstraintsMoverCreator.hh:22

ClearConstraintsMoverCreatorAP

ClearConstraintsMoverCreatorCAP

CombinePoseMover
protocols/simple_moves/CombinePoseMover.hh:36

CombinePoseMoverAP

CombinePoseMoverCAP

ConsensusDesignMover
This mover will modify a given task according to a sequence profile and then call the PackRotamersMover.

ConsensusDesignMoverAP

ConsensusDesignMoverCAP

ConsensusDesignMoverCreator
protocols/simple_moves/ConsensusDesignMoverCreator.hh:22

ConsensusDesignMoverCreatorAP

ConsensusDesignMoverCreatorCAP

ConstrainToIdealMover
///////////////WARNING WARNING WARNING//////////////////////////////////////////////////// Idealization is generally performed by adding constraints to the Pose that keep bond lengths and angles within the appropriate ranges; then freeing those DOFs and performing minimization or sampling.

ConstrainToIdealMoverAP

ConstrainToIdealMoverCAP

ConstraintSetMover
protocols/simple_moves/ConstraintSetMover.hh:30

ConstraintSetMoverAP

ConstraintSetMoverCAP

ConstraintSetMoverCreator
protocols/simple_moves/ConstraintSetMoverCreator.hh:22

ConstraintSetMoverCreatorAP

ConstraintSetMoverCreatorCAP

ContingentAcceptMover
protocols/simple_moves/ContingentAcceptMover.hh:27

ContingentAcceptMoverAP

ContingentAcceptMoverCAP

ContingentAcceptMoverCreator
protocols/simple_moves/ContingentAcceptMoverCreator.hh:22

ContingentAcceptMoverCreatorAP

ContingentAcceptMoverCreatorCAP

CopyDofMover
protocols/simple_moves/CopyDofMover.hh:32

CopyDofMoverAP

CopyDofMoverCAP

CoupledMover
protocols/simple_moves/CoupledMover.hh:41

CoupledMoverAP

CoupledMoverCAP

CoupledMoverCreator
protocols/simple_moves/CoupledMoverCreator.hh:22

CoupledMoverCreatorAP

CoupledMoverCreatorCAP

CutChainMover
simple mover that sperates Fv from Fl into two seperate chains

CutChainMoverAP

CutChainMoverCAP

CutChainMoverCreator
protocols/simple_moves/CutChainMoverCreator.hh:22

CutChainMoverCreatorAP

CutChainMoverCreatorCAP

CyclizationMover
This mover performas a variaty of functions related to cyclizing a chain in a pose.

CyclizationMoverAP

CyclizationMoverCAP

DME_FilterMover
protocols/simple_moves/DME_FilterMover.hh:44

DME_FilterMoverAP

DME_FilterMoverCAP

DOFHistogramRecorder
protocols/simple_moves/DOFHistogramRecorder.hh:55

DOFHistogramRecorderAP

DOFHistogramRecorderCAP

DeleteChainsMover
Delete a chain from a Pose, or a set of chains.

DeleteChainsMoverAP

DeleteChainsMoverCAP

DeleteChainsMoverCreator
protocols/simple_moves/DeleteChainsMoverCreator.hh:23

DeleteChainsMoverCreatorAP

DeleteChainsMoverCreatorCAP

DesignRepackMover
a pure virtual base class for movers which redesign and repack the interface

DesignRepackMoverAP

DesignRepackMoverCAP

DisulfideCyclizationViability
protocols/simple_moves/DisulfideInsertionMover.hh:35

DisulfideInsertionMover
a mover that given a receptor peptide pose mutates the peptides edge residues to cysteins, if needed, and enforces disulfide bonding by constrained minimization of the bond and the interaction

DisulfideInsertionMoverAP

DisulfideInsertionMoverCAP

DisulfideInsertionMoverCreator
protocols/simple_moves/DisulfideInsertionMoverCreator.hh:29

DisulfideInsertionMoverCreatorAP

DisulfideInsertionMoverCreatorCAP

DumpPdb
what you think this can now be assimilated into DumpPdbMover

DumpPdbAP

DumpPdbCAP

DumpPdbCreator
protocols/simple_moves/DumpPdbCreator.hh:24

DumpPdbCreatorAP

DumpPdbCreatorCAP

EnergyCutRotamerTrialsMinMover
Wrapper for Rotamer Trials with Minimization, which modifies only rotamers whose energy changed by a given constant

EnergyCutRotamerTrialsMinMoverAP

EnergyCutRotamerTrialsMinMoverCAP

EnergyCutRotamerTrialsMover
protocols/simple_moves/RotamerTrialsMover.hh:138

EnergyCutRotamerTrialsMoverAP

EnergyCutRotamerTrialsMoverCAP

ExtendedPoseMover
protocols/simple_moves/ExtendedPoseMover.hh:35

ExtendedPoseMoverAP

ExtendedPoseMoverCAP

ExtendedPoseMoverCreator
protocols/simple_moves/ExtendedPoseMoverCreator.hh:25

ExtendedPoseMoverCreatorAP

ExtendedPoseMoverCreatorCAP

FavorSequenceProfile
protocols/simple_moves/FavorSequenceProfile.hh:36

FavorSequenceProfileAP

FavorSequenceProfileCAP

FavorSequenceProfileCreator
protocols/simple_moves/FavorSequenceProfileCreator.hh:23

FavorSequenceProfileCreatorAP

FavorSequenceProfileCreatorCAP

FavorSymmetricSequence
protocols/simple_moves/FavorSymmetricSequence.hh:22

FavorSymmetricSequenceAP

FavorSymmetricSequenceCAP

FavorSymmetricSequenceCreator
protocols/simple_moves/FavorSymmetricSequenceCreator.hh:24

FavorSymmetricSequenceCreatorAP

FavorSymmetricSequenceCreatorCAP

FindConsensusSequence
protocols/simple_moves/FindConsensusSequence.hh:30

FindConsensusSequenceAP

FindConsensusSequenceCAP

FindConsensusSequenceCreator
protocols/simple_moves/FindConsensusSequenceCreator.hh:22

FindConsensusSequenceCreatorAP

FindConsensusSequenceCreatorCAP

ForceDisulfidesMover
simple mover that fixes disulfides according to a defined list and then simultaneously repacks within 6A shells around each affected cystein residue.

ForceDisulfidesMoverAP

ForceDisulfidesMoverCAP

ForceDisulfidesMoverCreator
protocols/simple_moves/ForceDisulfidesMoverCreator.hh:22

ForceDisulfidesMoverCreatorAP

ForceDisulfidesMoverCreatorCAP

FragmentCost
protocols/simple_moves/SmoothFragmentMover.hh:40

FragmentCostAP

FragmentCostCAP

FragmentMover
abstract base class for FragmentMovers

FragmentMoverAP

FragmentMoverCAP

GenericMonteCarloMover
protocols/simple_moves/GenericMonteCarloMover.hh:62

GenericMonteCarloMoverAP

GenericMonteCarloMoverCAP

GenericMonteCarloMoverCreator
protocols/simple_moves/GenericMonteCarloMoverCreator.hh:22

GenericMonteCarloMoverCreatorAP

GenericMonteCarloMoverCreatorCAP

GreenPacker
protocols/simple_moves/GreenPacker.hh:191

GreenPackerAP

GreenPackerCAP

GroupDiscriminator
Interface class used to break a pose down into a set of component "groups" where intra-group rotamer-pair energies are preserved between calls to the GreenPacker.

GroupDiscriminatorAP

GroupDiscriminatorCAP

GunnCost
protocols/simple_moves/GunnCost.hh:62

GunnCostAP

GunnCostCAP

GunnTuple
protocols/simple_moves/GunnCost.hh:49

GunnTupleAP

GunnTupleCAP

IonizableResidue
protocols/simple_moves/ReportEffectivePKA.hh:31

IonizableResidueAP

IonizableResidueCAP

LoadPDBMover
protocols/simple_moves/LoadPDBMover.hh:33

LoadPDBMoverAP

LoadPDBMoverCAP

LoadPDBMoverCreator
protocols/simple_moves/LoadPDBMoverCreator.hh:22

LoadPDBMoverCreatorAP

LoadPDBMoverCreatorCAP

LoadUnboundRotMover
This BS class exists to route around a hard-coded pseudo-Mover in the APPLY_TO_POSE section of the Parser.

LoadUnboundRotMoverAP

LoadUnboundRotMoverCAP

LoadUnboundRotMoverCreator
protocols/simple_moves/LoadUnboundRotMoverCreator.hh:22

LoadUnboundRotMoverCreatorAP

LoadUnboundRotMoverCreatorCAP

LoggedFragmentMover
protocols/simple_moves/FragmentMover.hh:287

LoggedFragmentMoverAP

LoggedFragmentMoverCAP

MSDMover
protocols/simple_moves/MSDMover.hh:34

MSDMoverAP

MSDMoverCAP

MSDMoverCreator
protocols/simple_moves/MSDMoverCreator.hh:22

MSDMoverCreatorAP

MSDMoverCreatorCAP

MakePolyXMover
protocols/simple_moves/MakePolyXMover.hh:34

MakePolyXMoverAP

MakePolyXMoverCAP

MakePolyXMoverCreator
protocols/simple_moves/MakePolyXMoverCreator.hh:22

MakePolyXMoverCreatorAP

MakePolyXMoverCreatorCAP

MembraneTopology
A mover to change one torsion angle

MembraneTopologyAP

MembraneTopologyCAP

MembraneTopologyCreator
protocols/simple_moves/MembraneTopologyCreator.hh:21

MembraneTopologyCreatorAP

MembraneTopologyCreatorCAP

MinMover
//////////////////////////////////////////////////////////////////////////// A protocols::moves::Mover that minimizes a Pose to a local energy minimum by performing energy minimization of a ScoreFunction over the allowable degrees of freedom, defined by a MoveMap.

MinMoverAP

MinMoverCAP

MinMoverCreator
protocols/simple_moves/MinMoverCreator.hh:22

MinMoverCreatorAP

MinMoverCreatorCAP

MinPackMover
a mover that packs and minimizes the side-chains.

MinPackMoverAP

MinPackMoverCAP

MinPackMoverCreator
protocols/simple_moves/MinPackMoverCreator.hh:22

MinPackMoverCreatorAP

MinPackMoverCreatorCAP

MinimalRotamer
protocols/simple_moves/GreenPacker.hh:47

MinimalRotamerAP

MinimalRotamerCAP

MissingDensityToJumpMover
protocols/simple_moves/MissingDensityToJumpMover.hh:41

MissingDensityToJumpMoverAP

MissingDensityToJumpMoverCAP

ModifyVariantTypeMover
Adds variant types to selected residues

ModifyVariantTypeMoverAP

ModifyVariantTypeMoverCAP

ModifyVariantTypeMoverCreator
protocols/simple_moves/ModifyVariantTypeMoverCreator.hh:22

ModifyVariantTypeMoverCreatorAP

ModifyVariantTypeMoverCreatorCAP

MonteCarloRecover
protocols/simple_moves/MonteCarloRecover.hh:38

MonteCarloRecoverAP

MonteCarloRecoverCAP

MonteCarloRecoverCreator
protocols/simple_moves/MonteCarloRecoverCreator.hh:22

MonteCarloRecoverCreatorAP

MonteCarloRecoverCreatorCAP

MonteCarloReset
protocols/simple_moves/MonteCarloReset.hh:42

MonteCarloResetAP

MonteCarloResetCAP

MonteCarloResetCreator
protocols/simple_moves/MonteCarloResetCreator.hh:22

MonteCarloResetCreatorAP

MonteCarloResetCreatorCAP

MonteCarloTest
protocols/simple_moves/MonteCarloTest.hh:42

MonteCarloTestAP

MonteCarloTestCAP

MonteCarloTestCreator
protocols/simple_moves/MonteCarloTestCreator.hh:22

MonteCarloTestCreatorAP

MonteCarloTestCreatorCAP

MutateResidue
A mover to mutate a single residue

MutateResidueAP

MutateResidueCAP

MutateResidueCreator
protocols/simple_moves/MutateResidueCreator.hh:22

MutateResidueCreatorAP

MutateResidueCreatorCAP

O2M_MutateMover
protocols/simple_moves/O2M_MutateMover.hh:30

O2M_MutateMoverAP

O2M_MutateMoverCAP

PDBReloadMover
protocols/simple_moves/PDBReloadMover.hh:30

PDBReloadMoverAP

PDBReloadMoverCAP

PDBReloadMoverCreator
protocols/simple_moves/PDBReloadMoverCreator.hh:22

PDBReloadMoverCreatorAP

PDBReloadMoverCreatorCAP

PSSM2BfactorMover
protocols/simple_moves/PSSM2BfactorMover.hh:25

PSSM2BfactorMoverAP

PSSM2BfactorMoverCAP

PSSM2BfactorMoverCreator
protocols/simple_moves/PSSM2BfactorMoverCreator.hh:22

PSSM2BfactorMoverCreatorAP

PSSM2BfactorMoverCreatorCAP

PackRotamersMover
A protocols::moves::Mover that packs the side-chains using a rotamer library...

PackRotamersMoverAP

PackRotamersMoverCAP

PackRotamersMoverCreator
protocols/simple_moves/PackRotamersMoverCreator.hh:22

PackRotamersMoverCreatorAP

PackRotamersMoverCreatorCAP

PackRotamersMoverLazy
a mover that packs the side-chains using a rotamer library in a lazy fashion.

PackRotamersMoverLazyAP

PackRotamersMoverLazyCAP

PackRotamersMoverLazyCreator
protocols/simple_moves/PackRotamersMoverLazyCreator.hh:23

PackRotamersMoverLazyCreatorAP

PackRotamersMoverLazyCreatorCAP

PeptideStapleMover
protocols/simple_moves/PeptideStapleMover.hh:37

PeptideStapleMoverAP

PeptideStapleMoverCAP

PeriodicBoxMover
protocols/simple_moves/PeriodicBoxMover.hh:84

PeriodicBoxMoverAP

PeriodicBoxMoverCAP

PeriodicBoxMoverCreator
protocols/simple_moves/PeriodicBoxMoverCreator.hh:20

PeriodicBoxMoverCreatorAP

PeriodicBoxMoverCreatorCAP

ProlineFixMover
protocols/simple_moves/ProlineFixMover.hh:38

ProlineFixMoverAP

ProlineFixMoverCAP

RandomOmegaFlipMover
Simple class that flips a random omega selected from a movemap 180 degrees

RandomOmegaFlipMoverAP

RandomOmegaFlipMoverCAP

RandomOmegaFlipMoverCreator
protocols/simple_moves/RandomOmegaFlipMoverCreator.hh:22

RandomOmegaFlipMoverCreatorAP

RandomOmegaFlipMoverCreatorCAP

RandomTorsionMover
Simple class that randomly purturbs a random torsion selected from a movemap

RandomTorsionMoverAP

RandomTorsionMoverCAP

RandomTorsionMoverCreator
protocols/simple_moves/RandomTorsionMoverCreator.hh:22

RandomTorsionMoverCreatorAP

RandomTorsionMoverCreatorCAP

RepackSidechainsMover
A protocols::moves::Mover that packs the side-chains (very similar to pack_missing_sidechains()

RepackSidechainsMoverAP

RepackSidechainsMoverCAP

RepackSidechainsMoverCreator
protocols/simple_moves/RepackSidechainsMoverCreator.hh:22

RepackSidechainsMoverCreatorAP

RepackSidechainsMoverCreatorCAP

RepeatPropagationMover
protocols/simple_moves/RepeatPropagationMover.hh:40

RepeatPropagationMoverAP

RepeatPropagationMoverCAP

RepeatPropagationMoverCreator
protocols/simple_moves/RepeatPropagationMoverCreator.hh:23

RepeatPropagationMoverCreatorAP

RepeatPropagationMoverCreatorCAP

ReportEffectivePKA
scale density map intensities to match a pose's

ReportEffectivePKAAP

ReportEffectivePKACAP

ReportEffectivePKACreator
protocols/simple_moves/ReportEffectivePKACreator.hh:22

ReportEffectivePKACreatorAP

ReportEffectivePKACreatorCAP

RepulsiveOnlyMover
this mover replace designated residues with glycines, and then assigns a "REPLONLY" residue type to those glycines.

RepulsiveOnlyMoverAP

RepulsiveOnlyMoverCAP

ResTypeFragmentMover
protocols/simple_moves/ResTypeFragmentMover.hh:41

ResTypeFragmentMoverAP

ResTypeFragmentMoverCAP

ResetBaselineMover
protocols/simple_moves/ResetBaselineMover.hh:27

ResetBaselineMoverAP

ResetBaselineMoverCAP

ResetBaselineMoverCreator
protocols/simple_moves/ResetBaselineMoverCreator.hh:22

ResetBaselineMoverCreatorAP

ResetBaselineMoverCreatorCAP

ResidueTypeConstraintMover
protocols/simple_moves/ResidueTypeConstraintMover.hh:30

ResidueTypeConstraintMoverAP

ResidueTypeConstraintMoverCAP

ResidueTypeConstraintMoverCreator
protocols/simple_moves/ResidueTypeConstraintMoverCreator.hh:22

ResidueTypeConstraintMoverCreatorAP

ResidueTypeConstraintMoverCreatorCAP

ReturnSidechainMover
This class takes two poses, one at instantiation and one at apply.

ReturnSidechainMoverAP

ReturnSidechainMoverCAP

RingConformationMover
Based on a given MoveMap, this mover selects movable cyclic residues and flips their rings to an idealized ring conformer.

RingConformationMoverAP

RingConformationMoverCAP

RingConformationMoverCreator
MoverCreator allowing the MoverFactory to create a RingConformationMover

RingConformationMoverCreatorAP

RingConformationMoverCreatorCAP

RotamerTrialsMinMover
protocols/simple_moves/RotamerTrialsMinMover.hh:39

RotamerTrialsMinMoverAP

RotamerTrialsMinMoverCAP

RotamerTrialsMinMoverCreator
protocols/simple_moves/RotamerTrialsMinMoverCreator.hh:22

RotamerTrialsMinMoverCreatorAP

RotamerTrialsMinMoverCreatorCAP

RotamerTrialsMover
protocols/simple_moves/RotamerTrialsMover.hh:43

RotamerTrialsMoverAP

RotamerTrialsMoverCAP

RotamerTrialsMoverCreator
protocols/simple_moves/RotamerTrialsMoverCreator.hh:23

RotamerTrialsMoverCreatorAP

RotamerTrialsMoverCreatorCAP

RotamerizeMover
a mover that replaces the repackable parts - sidechains, bases, etc.

RotamerizeMoverAP

RotamerizeMoverCAP

SaneMinMover
//////////////////////////////////////////////////////////////////////// performing energy minimization of a ScoreFunction over the allowable degrees of freedom, defined by a MoveMap.

SaneMinMoverAP

SaneMinMoverCAP

SaneMinMoverCreator
protocols/simple_moves/SaneMinMoverCreator.hh:22

SaneMinMoverCreatorAP

SaneMinMoverCreatorCAP

ScoreMover
protocols/simple_moves/ScoreMover.hh:32

ScoreMoverAP

ScoreMoverCAP

ScoreMoverCreator
protocols/simple_moves/ScoreMoverCreator.hh:22

ScoreMoverCreatorAP

ScoreMoverCreatorCAP

SequenceProfileMover
protocols/simple_moves/SequenceProfileMover.hh:30

SequenceProfileMoverAP

SequenceProfileMoverCAP

SequenceProfileMoverCreator
protocols/simple_moves/SequenceProfileMoverCreator.hh:22

SequenceProfileMoverCreatorAP

SequenceProfileMoverCreatorCAP

SetReturningPackRotamersMover
protocols/simple_moves/SetReturningPackRotamersMover.hh:38

SetReturningPackRotamersMoverAP

SetReturningPackRotamersMoverCAP

SetTorsion
A mover to change one torsion angle

SetTorsionAP

SetTorsionCAP

SetTorsionCreator
protocols/simple_moves/SetTorsionCreator.hh:21

SetTorsionCreatorAP

SetTorsionCreatorCAP

ShakeStructureMover
protocols/simple_moves/ShakeStructureMover.hh:36

ShakeStructureMoverAP

ShakeStructureMoverCAP

ShearMover
//////////////////////////////////////////////////////////////////////////// A mover that perturbs the phi of residue i and the psi of residue i-1 such that they create a 'shearing' effect, minimizing the downstream consequences of this torsional perturbation.

ShearMoverAP

ShearMoverCAP

ShearMoverCreator
protocols/simple_moves/BackboneMoverCreator.hh:30

ShearMoverCreatorAP

ShearMoverCreatorCAP

ShortBackrubMover
protocols/simple_moves/ShortBackrubMover.hh:37

ShortBackrubMoverAP

ShortBackrubMoverCAP

ShortBackrubMoverCreator
protocols/simple_moves/ShortBackrubMoverCreator.hh:22

ShortBackrubMoverCreatorAP

ShortBackrubMoverCreatorCAP

SingletonBase_T_core_chemical_ChemicalManager_T
SingletonBase is meant to serve as a base class for singleton classes in Rosetta handling the initialization of the singleton in a thread-safe way.

SingletonBase_T_core_chemical_ChemicalManager_TAP

SingletonBase_T_core_chemical_ChemicalManager_TCAP

SmallMover
//////////////////////////////////////////////////////////////////////////// A mover that makes independent random perturbations of the phi and psi torsion angles of residue i.

SmallMoverAP

SmallMoverCAP

SmallMoverCreator
protocols/simple_moves/BackboneMoverCreator.hh:23

SmallMoverCreatorAP

SmallMoverCreatorCAP

SmoothFragmentMover
protocols/simple_moves/SmoothFragmentMover.hh:65

SmoothFragmentMoverAP

SmoothFragmentMoverCAP

SuperimposeMover
Superimpose pose onto reference pose.

SuperimposeMoverAP

SuperimposeMoverCAP

SuperimposeMoverCreator
protocols/simple_moves/SuperimposeMoverCreator.hh:22

SuperimposeMoverCreatorAP

SuperimposeMoverCreatorCAP

SwitchChainOrderMover
protocols/simple_moves/SwitchChainOrderMover.hh:34

SwitchChainOrderMoverAP

SwitchChainOrderMoverCAP

SwitchChainOrderMoverCreator
protocols/simple_moves/SwitchChainOrderMoverCreator.hh:22

SwitchChainOrderMoverCreatorAP

SwitchChainOrderMoverCreatorCAP

SwitchResidueTypeSetMover
A mover that switches a pose between residue type sets (e.g.

SwitchResidueTypeSetMoverAP

SwitchResidueTypeSetMoverCAP

SwitchResidueTypeSetMoverCreator
protocols/simple_moves/SwitchResidueTypeSetMoverCreator.hh:22

SwitchResidueTypeSetMoverCreatorAP

SwitchResidueTypeSetMoverCreatorCAP

TailsScoreMover
protocols/simple_moves/TailsScoreMover.hh:33

TailsScoreMoverAP

TailsScoreMoverCAP

TaskAwareMinMover
this class wraps MinMover, but ensures that its MoveMap always contains up-to-date information about sidechain mobility.

TaskAwareMinMoverAP

TaskAwareMinMoverCAP

TaskAwareMinMoverCreator
protocols/simple_moves/TaskAwareMinMoverCreator.hh:22

TaskAwareMinMoverCreatorAP

TaskAwareMinMoverCreatorCAP

ThermodynamicData
structure that stores data during simulation intraE and interE are incorrect for now;

ThermodynamicDataAP

ThermodynamicDataCAP

TorsionDOFMover
TODO: De-duplicate shared code from RotateJumpAxisMover (angle picking code) This mover rotates a specific AtomTree Torsion degree of freedom (any valid 4-body torsion).

TorsionDOFMoverAP

TorsionDOFMoverCAP

TorsionSetMover
protocols/simple_moves/TorsionSetMover.hh:31

TorsionSetMoverAP

TorsionSetMoverCAP

Tumble
protocols/simple_moves/Tumble.hh:51

TumbleAP

TumbleCAP

TumbleCreator
protocols/simple_moves/TumbleCreator.hh:24

TumbleCreatorAP

TumbleCreatorCAP

UniformRotationMover
Uniform Rotation Mover

UniformRotationMoverAP

UniformRotationMoverCAP

UniformTranslationMover
Uniform Translation Mover

UniformTranslationMoverAP

UniformTranslationMoverCAP

UserDefinedGroupDiscriminator
protocols/simple_moves/GreenPacker.hh:152

UserDefinedGroupDiscriminatorAP

UserDefinedGroupDiscriminatorCAP

VallLookbackFragMover
protocols/simple_moves/VallLookbackFragMover.hh:45

VallLookbackFragMoverAP

VallLookbackFragMoverCAP

VirtualRootMover
protocols/simple_moves/VirtualRootMover.hh:26

VirtualRootMoverAP

VirtualRootMoverCAP

VirtualRootMoverCreator
protocols/simple_moves/VirtualRootMoverCreator.hh:22

VirtualRootMoverCreatorAP

VirtualRootMoverCreatorCAP

WobbleMover
A protocols::moves::Mover class for a classic-wobble analog: a smooth move followed by ccd closure @detail a smooth fragment is chosen according to the FragmentCost Functor; a cutpoint is inserted just in front of or just after the fragment a loop is defined around the fragment and cutpoint to be closed with ccd: a cut_Cterm insertion: ----lfff bbb---- f: fragment_res b: buffer_res -: immovable residues a !cut_Cterm insertion: ---bbb fffl--- the number of b resiudes is controlled by buffer_length_ (default 3); the move is used by apply() (inherited from FragmentMover).

WobbleMoverAP

WobbleMoverCAP

__CPP_AddCavitiesMover__

__CPP_AddChainMoverCreator__

__CPP_AddChainMover__

__CPP_AddConstraintsToCurrentConformationMoverCreator__

__CPP_AddConstraintsToCurrentConformationMover__

__CPP_AddJobPairDataCreator__

__CPP_AddJobPairData__

__CPP_AlignChainMoverCreator__

__CPP_AlignChainMover__

__CPP_BBConRotMover__

__CPP_BBG8T3AMover__

__CPP_BBGaussianMoverCreator__

__CPP_BBGaussianMover__

__CPP_BackboneMover__

__CPP_BoltzmannRotamerMoverCreator__

__CPP_BoltzmannRotamerMover__

__CPP_ChainGroupDiscriminator__

__CPP_ChainSplitMover__

__CPP_ChangeAndResetFoldTreeMoverCreator__

__CPP_ChangeAndResetFoldTreeMover__

__CPP_ClearConstraintsMoverCreator__

__CPP_ClearConstraintsMover__

__CPP_CombinePoseMover__

__CPP_ConsensusDesignMoverCreator__

__CPP_ConsensusDesignMover__

__CPP_ConstrainToIdealMover__

__CPP_ConstraintSetMoverCreator__

__CPP_ConstraintSetMover__

__CPP_ContingentAcceptMoverCreator__

__CPP_ContingentAcceptMover__

__CPP_CopyDofMover__

__CPP_CoupledMoverCreator__

__CPP_CoupledMover__

__CPP_CutChainMoverCreator__

__CPP_CutChainMover__

__CPP_CyclizationMover__

__CPP_DME_FilterMover__

__CPP_DeleteChainsMoverCreator__

__CPP_DeleteChainsMover__

__CPP_DesignRepackMover__

__CPP_DisulfideInsertionMoverCreator__

__CPP_DisulfideInsertionMover__

__CPP_DumpPdbCreator__

__CPP_DumpPdb__

__CPP_EnergyCutRotamerTrialsMinMover__

__CPP_EnergyCutRotamerTrialsMover__

__CPP_ExtendedPoseMoverCreator__

__CPP_ExtendedPoseMover__

__CPP_FavorSequenceProfileCreator__

__CPP_FavorSequenceProfile__

__CPP_FavorSymmetricSequenceCreator__

__CPP_FavorSymmetricSequence__

__CPP_FindConsensusSequenceCreator__

__CPP_FindConsensusSequence__

__CPP_ForceDisulfidesMoverCreator__

__CPP_ForceDisulfidesMover__

__CPP_GenericMonteCarloMoverCreator__

__CPP_GenericMonteCarloMover__

__CPP_GreenPacker__

__CPP_GroupDiscriminator__

__CPP_GunnCost__

__CPP_LoadPDBMoverCreator__

__CPP_LoadPDBMover__

__CPP_LoadUnboundRotMoverCreator__

__CPP_LoadUnboundRotMover__

__CPP_MSDMoverCreator__

__CPP_MSDMover__

__CPP_MakePolyXMoverCreator__

__CPP_MakePolyXMover__

__CPP_MembraneTopologyCreator__

__CPP_MembraneTopology__

__CPP_MinMoverCreator__

__CPP_MinMover__

__CPP_MinPackMoverCreator__

__CPP_MinPackMover__

__CPP_MissingDensityToJumpMover__

__CPP_ModifyVariantTypeMoverCreator__

__CPP_ModifyVariantTypeMover__

__CPP_MonteCarloRecoverCreator__

__CPP_MonteCarloRecover__

__CPP_MonteCarloResetCreator__

__CPP_MonteCarloReset__

__CPP_MonteCarloTestCreator__

__CPP_MonteCarloTest__

__CPP_MutateResidueCreator__

__CPP_MutateResidue__

__CPP_O2M_MutateMover__

__CPP_PDBReloadMoverCreator__

__CPP_PDBReloadMover__

__CPP_PSSM2BfactorMoverCreator__

__CPP_PSSM2BfactorMover__

__CPP_PackRotamersMoverCreator__

__CPP_PackRotamersMoverLazy__

__CPP_PackRotamersMover__

__CPP_PeptideStapleMover__

__CPP_PeriodicBoxMoverCreator__

__CPP_PeriodicBoxMover__

__CPP_ProlineFixMover__

__CPP_RandomOmegaFlipMoverCreator__

__CPP_RandomOmegaFlipMover__

__CPP_RandomTorsionMoverCreator__

__CPP_RandomTorsionMover__

__CPP_RepackSidechainsMoverCreator__

__CPP_RepackSidechainsMover__

__CPP_RepeatPropagationMoverCreator__

__CPP_RepeatPropagationMover__

__CPP_ReportEffectivePKACreator__

__CPP_ReportEffectivePKA__

__CPP_RepulsiveOnlyMover__

__CPP_ResetBaselineMoverCreator__

__CPP_ResetBaselineMover__

__CPP_ResidueTypeConstraintMoverCreator__

__CPP_ResidueTypeConstraintMover__

__CPP_ReturnSidechainMover__

__CPP_RingConformationMoverCreator__

__CPP_RingConformationMover__

__CPP_RotamerTrialsMinMoverCreator__

__CPP_RotamerTrialsMinMover__

__CPP_RotamerTrialsMoverCreator__

__CPP_RotamerTrialsMover__

__CPP_RotamerizeMover__

__CPP_SaneMinMoverCreator__

__CPP_SaneMinMover__

__CPP_ScoreMoverCreator__

__CPP_ScoreMover__

__CPP_SequenceProfileMoverCreator__

__CPP_SequenceProfileMover__

__CPP_SetReturningPackRotamersMover__

__CPP_SetTorsionCreator__

__CPP_SetTorsion__

__CPP_ShakeStructureMover__

__CPP_ShearMoverCreator__

__CPP_ShearMover__

__CPP_ShortBackrubMoverCreator__

__CPP_ShortBackrubMover__

__CPP_SmallMoverCreator__

__CPP_SmallMover__

__CPP_SuperimposeMoverCreator__

__CPP_SuperimposeMover__

__CPP_SwitchChainOrderMoverCreator__

__CPP_SwitchChainOrderMover__

__CPP_SwitchResidueTypeSetMoverCreator__

__CPP_SwitchResidueTypeSetMover__

__CPP_TailsScoreMover__

__CPP_TaskAwareMinMoverCreator__

__CPP_TaskAwareMinMover__

__CPP_TorsionDOFMover__

__CPP_TorsionSetMover__

__CPP_TumbleCreator__

__CPP_Tumble__

__CPP_UniformRotationMover__

__CPP_UniformTranslationMover__

__CPP_UserDefinedGroupDiscriminator__

__CPP_VirtualRootMoverCreator__

__CPP_VirtualRootMover__

__CPP_ddGCreator__

__CPP_ddG__

ddG
protocols/simple_moves/ddG.hh:40

ddGAP

ddGCAP

ddGCreator
protocols/simple_moves/ddGCreator.hh:23

ddGCreatorAP

ddGCreatorCAP

Functions

[hide private]

setup_vary_polar_hydrogen_geometry(...)
setup_vary_polar_hydrogen_geometry( (MoveMap)mm, (Pose)pose, (__CPP_AllowInsert__)allow_insert) -> None : protocols/simple_moves/ConstrainToIdealMover.hh:182

setup_vary_rna_bond_geometry(...)
setup_vary_rna_bond_geometry( (MoveMap)mm, (Pose)pose, (__CPP_AllowInsert__)allow_insert [, (ScoreType)score_type=rosetta.core.scoring._core_scoring_.ScoreType.rna_bond_geometry]) -> None : protocols/simple_moves/ConstrainToIdealMover.hh:178

uniform_dof_distribution(...)
uniform_dof_distribution( (DOF_Type)dof_type, (int)num_bins, (float)min, (float)max) -> vector1_Real : protocols/simple_moves/DOFHistogramRecorder.hh:173

Variables

[hide private]

DCV_ALREADY_CYCLIZED = rosetta.protocols.simple_moves._protoco...

DCV_CYCLIZABLE = rosetta.protocols.simple_moves._protocols_sim...

DCV_NOT_CYCLIZABLE = rosetta.protocols.simple_moves._protocols...

__package__ = None

Function Details

[hide private]

setup_vary_polar_hydrogen_geometry(...)


setup_vary_polar_hydrogen_geometry( (MoveMap)mm, (Pose)pose, (__CPP_AllowInsert__)allow_insert) -> None :
    protocols/simple_moves/ConstrainToIdealMover.hh:182

    C++ signature :
        void setup_vary_polar_hydrogen_geometry(core::kinematics::MoveMap {lvalue},core::pose::Pose {lvalue},boost::shared_ptr<protocols::toolbox::AllowInsert const>)

setup_vary_rna_bond_geometry(...)


setup_vary_rna_bond_geometry( (MoveMap)mm, (Pose)pose, (__CPP_AllowInsert__)allow_insert [, (ScoreType)score_type=rosetta.core.scoring._core_scoring_.ScoreType.rna_bond_geometry]) -> None :
    protocols/simple_moves/ConstrainToIdealMover.hh:178

    C++ signature :
        void setup_vary_rna_bond_geometry(core::kinematics::MoveMap {lvalue},core::pose::Pose {lvalue},boost::shared_ptr<protocols::toolbox::AllowInsert const> [,core::scoring::ScoreType=rosetta.core.scoring._core_scoring_.ScoreType.rna_bond_geometry])

uniform_dof_distribution(...)


uniform_dof_distribution( (DOF_Type)dof_type, (int)num_bins, (float)min, (float)max) -> vector1_Real :
    protocols/simple_moves/DOFHistogramRecorder.hh:173

    C++ signature :
        utility::vector1<double, std::allocator<double> > uniform_dof_distribution(core::id::DOF_Type,unsigned long,double,double)

Variables Details

[hide private]

DCV_ALREADY_CYCLIZED

Value:

rosetta.protocols.simple_moves._protocols_simple_moves_.DisulfideCycli
zationViability.DCV_ALREADY_CYCLIZED

DCV_CYCLIZABLE

Value:

rosetta.protocols.simple_moves._protocols_simple_moves_.DisulfideCycli
zationViability.DCV_CYCLIZABLE

DCV_NOT_CYCLIZABLE

Value:

rosetta.protocols.simple_moves._protocols_simple_moves_.DisulfideCycli
zationViability.DCV_NOT_CYCLIZABLE