CloudPDBWriter
an output writer that uses a grouper to group matches and then
writes out one pdb file per group, with the different hits from the
group in different MODEL sections
DownstreamRMSEvaluator
In the best of all possible worlds, this class would be
sufficiently generic such that I could compare RMS for arbitrary
subsets of atoms on the downstream partner, but in my first pass
implementation, I'm writing while aiming at the RigidLigandBuilder
-- 1 residue -- and I'll compare all heavy atoms.
SameSequenceAndDSPositionGrouper
class that groups based on same sequence and proximity of the
downstream object (based on rms ) NOTE: right now only the
downstream position according to the first geomcst id upstream
residue is taken into account
SingletonBase_T_core_chemical_ChemicalManager_T
SingletonBase is meant to serve as a base class for singleton
classes in Rosetta handling the initialization of the singleton in
a thread-safe way.