Package rosetta :: Package protocols :: Package flxbb :: Module _protocols_flxbb_
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Module _protocols_flxbb_

Classes [hide private]
  CombinedTaskOperation
protocols/flxbb/LayerDesignOperation.hh:243
  CombinedTaskOperationAP
  CombinedTaskOperationCAP
  DesignTask
////////////////////////////////////////////////////////////////////////////////////////////////////
  DesignTaskAP
  DesignTaskCAP
  DesignTask_Layer
////////////////////////////////////////////////////////////////////////////////////////////////////
  DesignTask_LayerAP
  DesignTask_LayerCAP
  DesignTask_Normal
////////////////////////////////////////////////////////////////////////////////////////////////////
  DesignTask_NormalAP
  DesignTask_NormalCAP
  FilterStructs
/////////////////////////////////////////////////////////////////////////////////////
  FilterStructsAP
  FilterStructsCAP
  FilterStructs_Packstat
/////////////////////////////////////////////////////////////////////////////////////
  FilterStructs_PackstatAP
  FilterStructs_PackstatCAP
  FilterStructs_TotalCharge
/////////////////////////////////////////////////////////////////////////////////////
  FilterStructs_TotalChargeAP
  FilterStructs_TotalChargeCAP
  FlxbbDesign
////////////////////////////////////////////////////////////////////////////////////////////////////
  FlxbbDesignAP
  FlxbbDesignCAP
  FlxbbDesignCreator
protocols/flxbb/FlxbbDesignCreator.hh:22
  FlxbbDesignCreatorAP
  FlxbbDesignCreatorCAP
  FlxbbDesignPack
////////////////////////////////////////////////////////////////////////////////////////////////////
  FlxbbDesignPackAP
  FlxbbDesignPackCAP
  InterlockAroma
////////////////////////////////////////////////////////////////////////////////////////////////////
  InterlockAromaAP
  InterlockAromaCAP
  LayerDesignOperation
protocols/flxbb/LayerDesignOperation.hh:61
  LayerDesignOperationAP
  LayerDesignOperationCAP
  LayerDesignOperationCreator
protocols/flxbb/LayerDesignOperationCreator.hh:21
  LayerDesignOperationCreatorAP
  LayerDesignOperationCreatorCAP
  __CPP_CombinedTaskOperation__
  __CPP_DesignTask_Layer__
  __CPP_DesignTask_Normal__
  __CPP_DesignTask__
  __CPP_FilterStructs_Packstat__
  __CPP_FilterStructs_TotalCharge__
  __CPP_FilterStructs__
  __CPP_FlxbbDesignCreator__
  __CPP_FlxbbDesignPack__
  __CPP_FlxbbDesign__
  __CPP_InterlockAroma__
  __CPP_LayerDesignOperationCreator__
  __CPP_LayerDesignOperation__
Functions [hide private]
None :
FlxbbDesign_main()
protocols/flxbb/FlxbbDesign_main.hh:20
 
constraints_NtoC(...)
constraints_NtoC( (Pose)pose, (float)coef [, (float)condist=11.0]) -> object : constraint between N- and C-terminal Ca atoms
 
constraints_sheet(...)
constraints_sheet( (Pose)pose, (float)coef [, (float)condist=5.5]) -> object : constrain between Ca atoms in beta sheet
 
find_ligands(...)
find_ligands( (Pose)pose) -> vector1_Size : Looks for unknown amino acids in the pose and returns their indices
Variables [hide private]
  __package__ = None
Function Details [hide private]

FlxbbDesign_main()

 
    protocols/flxbb/FlxbbDesign_main.hh:20

    C++ signature :
        void FlxbbDesign_main()

Returns: None :

constraints_NtoC(...)

 

constraints_NtoC( (Pose)pose, (float)coef [, (float)condist=11.0]) -> object :
    constraint between N- and C-terminal Ca atoms
    

    C++ signature :
        utility::vector1<boost::shared_ptr<core::scoring::constraints::Constraint>, std::allocator<boost::shared_ptr<core::scoring::constraints::Constraint> > > constraints_NtoC(core::pose::Pose,double [,double=11.0])

constraints_sheet(...)

 

constraints_sheet( (Pose)pose, (float)coef [, (float)condist=5.5]) -> object :
    constrain between Ca atoms in beta sheet
    

    C++ signature :
        utility::vector1<boost::shared_ptr<core::scoring::constraints::Constraint>, std::allocator<boost::shared_ptr<core::scoring::constraints::Constraint> > > constraints_sheet(core::pose::Pose,double [,double=5.5])

constraints_sheet( (Pose)pose, (object)blue, (float)coef [, (float)condist=5.5]) -> object :
    constrain between Ca atoms in beta sheet, which are specified in blueprint file
    

    C++ signature :
        utility::vector1<boost::shared_ptr<core::scoring::constraints::Constraint>, std::allocator<boost::shared_ptr<core::scoring::constraints::Constraint> > > constraints_sheet(core::pose::Pose,boost::shared_ptr<protocols::jd2::parser::BluePrint>,double [,double=5.5])

find_ligands(...)

 

find_ligands( (Pose)pose) -> vector1_Size :
    Looks for unknown amino acids in the pose and returns their indices
    

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > find_ligands(core::pose::Pose)