Module _basic_

Error([  (TracerPriority)priority=rosetta.basic._basic_.TracerPriority.t_error]) -> Tracer :
    Predefined Error tracer.
    

    C++ signature :
        basic::Tracer {lvalue} Error([ basic::TracerPriority=rosetta.basic._basic_.TracerPriority.t_error])

T( (str) [, (TracerPriority)=rosetta.basic._basic_.TracerPriority.t_info]) -> Tracer :
    T is special function for assign tracer property on the static object.
    

    C++ signature :
        basic::Tracer {lvalue} T(std::string [,basic::TracerPriority=rosetta.basic._basic_.TracerPriority.t_info])

Warning([  (TracerPriority)priority=rosetta.basic._basic_.TracerPriority.t_warning]) -> Tracer :
    Predefined Warning tracer.
    

    C++ signature :
        basic::Tracer {lvalue} Warning([ basic::TracerPriority=rosetta.basic._basic_.TracerPriority.t_warning])

angle_in_range( (float)ang) -> None :
    taken from wobble.cc
    

    C++ signature :
        void angle_in_range(double {lvalue})

calc_quadratic( (float)a, (float)b, (float)c, (float)n1, (float)n2) -> None :
    basic/basic.hh:29

    C++ signature :
        void calc_quadratic(double,double,double,double {lvalue},double {lvalue})

get_boolean_option( (str)arg1) -> bool :

    C++ signature :
        bool get_boolean_option(std::string)

get_boolean_vector_option( (str)arg1) -> vector1_bool :

    C++ signature :
        utility::vector1<bool, std::allocator<bool> > get_boolean_vector_option(std::string)

get_file_option( (str)arg1) -> str :

    C++ signature :
        std::string get_file_option(std::string)

get_file_vector_option( (str)arg1) -> vector1_string :

    C++ signature :
        utility::vector1<std::string, std::allocator<std::string> > get_file_vector_option(std::string)

get_integer_option( (str)arg1) -> int :

    C++ signature :
        int get_integer_option(std::string)

get_integer_vector_option( (str)arg1) -> vector1_int :

    C++ signature :
        utility::vector1<int, std::allocator<int> > get_integer_vector_option(std::string)

get_pymol_chain( (int)i) -> str :
    basic/pymol_chains.hh:28

    C++ signature :
        char get_pymol_chain(unsigned long)

get_pymol_chain_index_1( (str)c) -> int :
    basic/pymol_chains.hh:30

    C++ signature :
        unsigned long get_pymol_chain_index_1(char)

    basic/pymol_chains.hh:26

    C++ signature :
        unsigned long get_pymol_num_unique_ids()

Returns: int :

get_real_option( (str)arg1) -> float :

    C++ signature :
        double get_real_option(std::string)

get_real_option( (str)arg1) -> vector1_Real :

    C++ signature :
        utility::vector1<double, std::allocator<double> > get_real_option(std::string)

get_string_option( (str)arg1) -> str :

    C++ signature :
        std::string get_string_option(std::string)

get_string_vector_option( (str)arg1) -> vector1_string :

    C++ signature :
        utility::vector1<std::string, std::allocator<std::string> > get_string_vector_option(std::string)

get_usage_from_procfilesystem( (OStream)mem_report) -> None :
    basic/MemTracer.hh:49

    C++ signature :
        void get_usage_from_procfilesystem(std::ostream {lvalue})

handles_metric_value( (MetricValueBase)metric_value) -> bool :
    check whether a MetricValue can be written to or read from a stream
    

    C++ signature :
        bool handles_metric_value(basic::MetricValueBase)

    set global 'init_was_called' to true
    

    C++ signature :
        void init()

Returns: None :

interpolate_2d_func_of_angles( (float)x, (float)y, (object)xy_func, (float)val, (float)dval_dx, (float)dval_dy) -> None :
    /////////////////////////////////////////////////////////////////////////////
    
     get bilinear interpolate of a 2d function with degree angle arguments
    
     
         Value and derivatives of bilinear interpolation on a 2d function
         with degree angle arguments represented by a 2d array with binned
         degree angle indices.  (see Num. Recipes v2, sec 3.6,
         "Interpolation in two or more dimensions")
    
         The derivatives are of the bilinear interpolation only. This is
         not the same value as a numerical derivative of function
         values. The derivatives here are discontinuous every time you
         cross over a bin boundary in either dimension
    
     [in]   x - in - function argument value in 1st dim to find interpolate for
     [in]   y - in - " 2nd dim "
     [in]   xy_func - in - 2d array with binned angle value indicies;
                   represents known values of 2d function being interpolated.
     [out]   val - out - bilinear interpolated value
     [out]   dval_dx - out - derivative of interpolated value w.r.t. 1st dim angle
     [out]   dval_dy - out - " 2nd dim "
    
     @remarks
    
         !!! assumes 10 degree bins in both dimensions of xy_func
    
     @references
    
     ctsa 8-19-03
    
    //////////////////////////////////////////////////////////////////////////////
    

    C++ signature :
        void interpolate_2d_func_of_angles(double,double,ObjexxFCL::FArray2A<double>,double {lvalue},double {lvalue},double {lvalue})

interpolate_bilinear( (int)xbin, (int)xbin_next, (float)xd, (int)ybin, (int)ybin_next, (float)yd, (object)xy_func, (int)xbin_count, (int)ybin_count, (float)binrange, (bool)angles, (float)val, (float)dval_dx, (float)dval_dy) -> None :
    /////////////////////////////////////////////////////////////////////////////
    
     get bilinear interpolate of a 2d periodic function
    
     
         Value and derivatives of bilinear interpolation on a 2d binned
         periodic function, represented as a 2d array.  (see Num. Recipes
         v2, sec 3.6, "Interpolation in two or more dimensions")
    
         Note that it is automatically assumed that the arguments are
         periodic, that is f(a,b),a,b=periodic value; the *value* of the
         function can be treated as periodic ( fixed to a periodicity of
         360.) as well when the input parameter angle is set to true
    
         The derivatives are of the bilinear interpolation only. This is
         not the same value as a numerical derivative of function
         values. The derivatives here are discontinuous every time you
         cross over a bin boundary in either dimension
    
     [in]   xbin - in - low bin in 1st dim
     [in]   xbin_next - in - high bin in 1st dim
     [in]   xd - in - error between low and real val in 1st dim
     [in]   ybin - in - " 2nd dim "
     [in]   ybin_next - in - " 2nd dim "
     [in]   yd - in - " 2nd dim "
     [in]   xy_func - in - 2d-array specifying the 2d binned function values,
                            assumed to be periodic in each dimension
     [in]   xbin_count - in - number of bins in the 1st dim of the periodic
                            function
     [in]   ybin_count - in - " 2nd dim "
     [in]   binrange - in - range of bin in angles ( for both dimensions )
     [in]   angles - in - if true, treat the the *values* of xy_func as
                           as having a periodicity of 360. ( note that
                           the bin ranges are already assumed periodic )
     [out]   val - out - bilinear interpolated value of xy_func
     [out]   dval_dx - out - derivative of interpolation w.r.t 1st dim
     [out]   dval_dy - out - " 2nd dim "
    
     @remarks
    
     @references
    
     ctsa 8-19-03
    
    //////////////////////////////////////////////////////////////////////////////
    

    C++ signature :
        void interpolate_bilinear(int,int,double,int,int,double,ObjexxFCL::FArray2A<double>,int,int,double,bool,double {lvalue},double {lvalue},double {lvalue})

interpolate_bilinear_by_value( (float)x0y0, (float)x1y0, (float)x0y1, (float)x1y1, (float)xd, (float)yd, (float)binrange, (bool)angles, (float)val, (float)dval_dx, (float)dval_dy) -> None :
    basic/interpolate.hh:112

    C++ signature :
        void interpolate_bilinear_by_value(double,double,double,double,double,double,double,bool,double {lvalue},double {lvalue},double {lvalue})

interpolate_get_angle_bins( (float)x, (float)binrange, (int)xbin, (int)xbin_next, (float)xd) -> None :
    /////////////////////////////////////////////////////////////////////////////
    
     get bin information for a periodic value w/ periodic bins
    
     
         for 'x', an angle in degrees, and angular bins of width
         'binrange' aligned to start bin 1 at a value of 0. degrees, find
         the two bins, whose average bin values 'x' falls between, and
         report the error between the lower average bin value and the real
         value of 'x'
    
     [in]   x - in - angle in degrees
     [in]   binrange - in - degrees per bin
     [out]   xbin - out - anglular bin whose average value is the lower
                          of the two average bin values bracketing 'x'
     [out]   xbin_next - out - anglular bin whose average value is the lower
                          of the two average bin values bracketing 'x'
     [out]   xd - out - error between the average value of bin 'xbin' and 'x'
    
     @remarks
    
     @references
    
     
    //////////////////////////////////////////////////////////////////////////////
    

    C++ signature :
        void interpolate_get_angle_bins(double,double,int {lvalue},int {lvalue},double {lvalue})

interpolate_trilinear( (int)xbin, (int)xbin_next, (float)xd, (int)ybin, (int)ybin_next, (float)yd, (int)zbin, (int)zbin_next, (float)zd, (object)xyz_func, (int)xbin_count, (int)ybin_count, (int)zbin_count, (float)binrange, (bool)angles, (float)val, (float)dval_dx, (float)dval_dy, (float)dval_dz) -> None :
    basic/interpolate.hh:351

    C++ signature :
        void interpolate_trilinear(int,int,double,int,int,double,int,int,double,ObjexxFCL::FArray3A<double>,int,int,int,double,bool,double {lvalue},double {lvalue},double {lvalue},double {lvalue})

interpolate_trilinear_by_value( (float)x0y0z0, (float)x1y0z0, (float)x0y1z0, (float)x1y1z0, (float)x0y0z1, (float)x1y0z1, (float)x0y1z1, (float)x1y1z1, (float)xd, (float)yd, (float)zd, (float)binrange, (bool)angles, (float)val, (float)dval_dx, (float)dval_dy, (float)dval_dz) -> None :
    basic/interpolate.hh:156

    C++ signature :
        void interpolate_trilinear_by_value(double,double,double,double,double,double,double,double,double,double,double,double,bool,double {lvalue},double {lvalue},double {lvalue},double {lvalue})

periodic_range( (float)a, (float)x) -> float :
    basic/basic.hh:50

    C++ signature :
        double periodic_range(double,double)

    basic/prof.hh:473

    C++ signature :
        void prof_reset()

Returns: None :

    basic/prof.hh:475

    C++ signature :
        void prof_show()

Returns: None :

prof_start_function_body( (ProfTag)tag) -> None :
    basic/prof.hh:437

    C++ signature :
        void prof_start_function_body(basic::ProfTag)

prof_stop_function_body( (ProfTag)tag) -> None :
    basic/prof.hh:453

    C++ signature :
        void prof_stop_function_body(basic::ProfTag)

read_metric_value( (std_istream)is) -> MetricValueBase :
    read a MetricValue from a stream, returns NULL if unsuccessful
    

    C++ signature :
        boost::shared_ptr<basic::MetricValueBase> read_metric_value(std::istream {lvalue})

read_metric_value( (std_istream)is, (MetricValueBase)metric_value) -> bool :
    read a MetricValue from a stream, returns true if successful
    

    C++ signature :
        bool read_metric_value(std::istream {lvalue},basic::MetricValueBase {lvalue})

set_boolean_option( (str)arg1, (bool)arg2) -> None :

    C++ signature :
        void set_boolean_option(std::string,bool)

set_boolean_vector_option( (str)arg1, (vector1_bool)arg2) -> None :

    C++ signature :
        void set_boolean_vector_option(std::string,utility::vector1<bool, std::allocator<bool> >)

set_file_option( (str)arg1, (str)arg2) -> None :

    C++ signature :
        void set_file_option(std::string,std::string)

set_file_vector_option( (str)arg1, (vector1_string)arg2) -> None :

    C++ signature :
        void set_file_vector_option(std::string,utility::vector1<std::string, std::allocator<std::string> >)

set_integer_option( (str)arg1, (int)arg2) -> None :

    C++ signature :
        void set_integer_option(std::string,int)

set_integer_vector_option( (str)arg1, (vector1_int)arg2) -> None :

    C++ signature :
        void set_integer_vector_option(std::string,utility::vector1<int, std::allocator<int> >)

set_real_option( (str)arg1, (float)arg2) -> None :

    C++ signature :
        void set_real_option(std::string,double)

set_real_option( (str)arg1, (vector1_Real)arg2) -> None :

    C++ signature :
        void set_real_option(std::string,utility::vector1<double, std::allocator<double> >)

set_string_option( (str)arg1, (str)arg2) -> None :

    C++ signature :
        void set_string_option(std::string,std::string)

set_string_vector_option( (str)arg1, (vector1_string)arg2) -> None :

    C++ signature :
        void set_string_vector_option(std::string,utility::vector1<std::string, std::allocator<std::string> >)

show_time( (Tracer)tr, (str)msg) -> None :
    basic/prof.hh:500

    C++ signature :
        void show_time(basic::Tracer {lvalue},std::string)

subtract_degree_angles( (float)a, (float)b) -> float :
    basic/basic.hh:36

    C++ signature :
        double subtract_degree_angles(double,double)

subtract_radian_angles( (float)a, (float)b) -> float :
    basic/basic.hh:43

    C++ signature :
        double subtract_radian_angles(double,double)

unsigned_periodic_range( (float)a, (float)x) -> float :
    a is restricted to [0.,x), assuming that a=a+n*x,, n=any integer
    

    C++ signature :
        double unsigned_periodic_range(double,double)

    return true if core::init was already called and false otherwise
    

    C++ signature :
        bool was_init_called()

Returns: bool :

write_metric_value( (OStream)os, (MetricValueBase)metric_value) -> bool :
    write a MetricValue to a stream, returns true if successful
    This function currently supports some of the most often used MetricValues. The
    type is always encoded in the output so that an object of the same class can be
    generated during reading. The supported types and their formats is as follows:
    double                    double <num>
    int                           Int <num>
    std::size_t                    std::size_t <num>
    bool                          Bool <0 or 1>
    utility::vector1<double>  Real[ <num1> <num2> ... ]
    utility::vector1<int>         Int[ <num1> <num2> ... ]
    utility::vector1<size_t>  size_t[ <num1> <num2> ... ]
    utility::vector1<bool>        Bool[ <bool1> <bool2> ... ]
    

    C++ signature :
        bool write_metric_value(std::ostream {lvalue},basic::MetricValueBase)

ARCHIVE_BLOCK_FILE

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_BLOCK_FILE

ARCHIVE_CRITICAL_JOBSCOMPLETE

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_CRITICAL_JOBSCOMPLETE

ARCHIVE_EVALUATORS

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_EVALUATORS

ARCHIVE_EVAL_DECOYS

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_EVAL_DECOYS

ARCHIVE_FILL_POSE

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_FILL_POSE

ARCHIVE_GEN_BATCH

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_GEN_BATCH

ARCHIVE_JOBSCOMPLETE

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_JOBSCOMPLETE

ARCHIVE_READ_DECOYS

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_READ_DECOYS

ARCHIVE_SCORE_POSE

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_SCORE_POSE

ARCHIVE_SYNC_BATCHES

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_SYNC_BATCHES

ATOM_TREE_UPDATE_INTERNAL_COORDS

Value:

rosetta.basic._basic_.ProfTag.ATOM_TREE_UPDATE_INTERNAL_COORDS

ATOM_TREE_UPDATE_XYZ_COORDS

Value:

rosetta.basic._basic_.ProfTag.ATOM_TREE_UPDATE_XYZ_COORDS

CANONICALMOVER_WRITE_TO_FILE

Value:

rosetta.basic._basic_.ProfTag.CANONICALMOVER_WRITE_TO_FILE

CA_DME_EVALUATION

Value:

rosetta.basic._basic_.ProfTag.CA_DME_EVALUATION

CA_RMSD_EVALUATION

Value:

rosetta.basic._basic_.ProfTag.CA_RMSD_EVALUATION

CHEMICAL_MAKE_POSE

Value:

rosetta.basic._basic_.ProfTag.CHEMICAL_MAKE_POSE

CONFORMATION_COPY

Value:

rosetta.basic._basic_.ProfTag.CONFORMATION_COPY

CONFORMATION_DETECT_DISULF

Value:

rosetta.basic._basic_.ProfTag.CONFORMATION_DETECT_DISULF

CONFORMATION_FIX_DISULF

Value:

rosetta.basic._basic_.ProfTag.CONFORMATION_FIX_DISULF

CONSTRAINT_SET_COPY

Value:

rosetta.basic._basic_.ProfTag.CONSTRAINT_SET_COPY

CONSTRUCT_DISTANCE_MATRIX

Value:

rosetta.basic._basic_.ProfTag.CONSTRUCT_DISTANCE_MATRIX

ENERGY_ENVPAIR_POTENTIAL

Value:

rosetta.basic._basic_.ProfTag.ENERGY_ENVPAIR_POTENTIAL

ENERGY_GRAPH_COPY

Value:

rosetta.basic._basic_.ProfTag.ENERGY_GRAPH_COPY

FACTS_GET_ALL_BORN_RADII

Value:

rosetta.basic._basic_.ProfTag.FACTS_GET_ALL_BORN_RADII

FACTS_ROTAMER_BACKGROUND_ENERGIES

Value:

rosetta.basic._basic_.ProfTag.FACTS_ROTAMER_BACKGROUND_ENERGIES

FACTS_ROTAMER_PAIR_ENERGIES

Value:

rosetta.basic._basic_.ProfTag.FACTS_ROTAMER_PAIR_ENERGIES

FACTS_SETUP_FOR_PACKING

Value:

rosetta.basic._basic_.ProfTag.FACTS_SETUP_FOR_PACKING

FARRAY_MANIPULATION

Value:

rosetta.basic._basic_.ProfTag.FARRAY_MANIPULATION

FIND_SUGAR_AND_SUITE_FRAGS_I

Value:

rosetta.basic._basic_.ProfTag.FIND_SUGAR_AND_SUITE_FRAGS_I

FIND_SUGAR_AND_SUITE_FRAGS_II

Value:

rosetta.basic._basic_.ProfTag.FIND_SUGAR_AND_SUITE_FRAGS_II

FRAGMENTPICKING_ATOMPAIR_SCORE

Value:

rosetta.basic._basic_.ProfTag.FRAGMENTPICKING_ATOMPAIR_SCORE

FRAGMENTPICKING_CANDIDATES_COLLECTING

Value:

rosetta.basic._basic_.ProfTag.FRAGMENTPICKING_CANDIDATES_COLLECTING

FRAGMENTPICKING_CS_SCORE

Value:

rosetta.basic._basic_.ProfTag.FRAGMENTPICKING_CS_SCORE

FRAGMENTPICKING_DIHEDRALCONSTR_SCORE

Value:

rosetta.basic._basic_.ProfTag.FRAGMENTPICKING_DIHEDRALCONSTR_SCORE

FRAGMENTPICKING_PHIPSI_SCORE

Value:

rosetta.basic._basic_.ProfTag.FRAGMENTPICKING_PHIPSI_SCORE

FRAGMENTPICKING_PROFILE_CAHING

Value:

rosetta.basic._basic_.ProfTag.FRAGMENTPICKING_PROFILE_CAHING

FRAGMENTPICKING_PROFILE_SCORE

Value:

rosetta.basic._basic_.ProfTag.FRAGMENTPICKING_PROFILE_SCORE

FRAGMENTPICKING_READ_VALL

Value:

rosetta.basic._basic_.ProfTag.FRAGMENTPICKING_READ_VALL

FRAGMENTPICKING_SECONDARY_SCORE

Value:

rosetta.basic._basic_.ProfTag.FRAGMENTPICKING_SECONDARY_SCORE

GB_GET_ALL_BORN_RADII

Value:

rosetta.basic._basic_.ProfTag.GB_GET_ALL_BORN_RADII

GB_SETUP_FOR_PACKING

Value:

rosetta.basic._basic_.ProfTag.GB_SETUP_FOR_PACKING

GEN_BORN_ROTAMER_BACKGROUND_ENERGIES

Value:

rosetta.basic._basic_.ProfTag.GEN_BORN_ROTAMER_BACKGROUND_ENERGIES

GEN_BORN_ROTAMER_PAIR_ENERGIES

Value:

rosetta.basic._basic_.ProfTag.GEN_BORN_ROTAMER_PAIR_ENERGIES

HIERARCHICAL_ADD_ELEM_TO_CACHE

Value:

rosetta.basic._basic_.ProfTag.HIERARCHICAL_ADD_ELEM_TO_CACHE

HIERARCHICAL_EVALUATE

Value:

rosetta.basic._basic_.ProfTag.HIERARCHICAL_EVALUATE

HIERARCHICAL_FIND

Value:

rosetta.basic._basic_.ProfTag.HIERARCHICAL_FIND

HIERARCHICAL_FIND_ADDRESS

Value:

rosetta.basic._basic_.ProfTag.HIERARCHICAL_FIND_ADDRESS

HIERARCHICAL_POOL_SIZE

Value:

rosetta.basic._basic_.ProfTag.HIERARCHICAL_POOL_SIZE

HIERARCHICAL_ROUND

Value:

rosetta.basic._basic_.ProfTag.HIERARCHICAL_ROUND

HIERARCHICAL_SORT_ADDRESSES

Value:

rosetta.basic._basic_.ProfTag.HIERARCHICAL_SORT_ADDRESSES

HIERARCHY_FIND_ADDRESS

Value:

rosetta.basic._basic_.ProfTag.HIERARCHY_FIND_ADDRESS

HIERARCHY_GET_NEXT_CANDIDATE

Value:

rosetta.basic._basic_.ProfTag.HIERARCHY_GET_NEXT_CANDIDATE

HIERARCHY_RECV_COORDS

Value:

rosetta.basic._basic_.ProfTag.HIERARCHY_RECV_COORDS

HIERARCHY_SEND_COORDS

Value:

rosetta.basic._basic_.ProfTag.HIERARCHY_SEND_COORDS

HIERARCHY_SETUP_TO_RECV

Value:

rosetta.basic._basic_.ProfTag.HIERARCHY_SETUP_TO_RECV

INITIALIZE_HIERARCHY

Value:

rosetta.basic._basic_.ProfTag.INITIALIZE_HIERARCHY

JD2_SILENT_OUTPUTTER

Value:

rosetta.basic._basic_.ProfTag.JD2_SILENT_OUTPUTTER

MAKE_BASE_PAIR_MOVE

Value:

rosetta.basic._basic_.ProfTag.MAKE_BASE_PAIR_MOVE

MAKE_BASE_STEP_MOVE

Value:

rosetta.basic._basic_.ProfTag.MAKE_BASE_STEP_MOVE

MASTER_PROCESS_NEW_STRUCTURES

Value:

rosetta.basic._basic_.ProfTag.MASTER_PROCESS_NEW_STRUCTURES

MPICANONICALSAMPLING

Value:

rosetta.basic._basic_.ProfTag.MPICANONICALSAMPLING

MPIH_ADD_FIRST_STRUCTURE

Value:

rosetta.basic._basic_.ProfTag.MPIH_ADD_FIRST_STRUCTURE

MPIH_EVAL_AGAINST_NBR

Value:

rosetta.basic._basic_.ProfTag.MPIH_EVAL_AGAINST_NBR

MPIH_EVAL_CHECK_PROGRESS

Value:

rosetta.basic._basic_.ProfTag.MPIH_EVAL_CHECK_PROGRESS

MPIH_EVAL_COMMUNICATE_NEW

Value:

rosetta.basic._basic_.ProfTag.MPIH_EVAL_COMMUNICATE_NEW

MPIH_PREPARE_WRITE_STRUCTURES

Value:

rosetta.basic._basic_.ProfTag.MPIH_PREPARE_WRITE_STRUCTURES

MPIH_WRITE_STRUCT

Value:

rosetta.basic._basic_.ProfTag.MPIH_WRITE_STRUCT

MPIPOOLCOMMUNICATION

Value:

rosetta.basic._basic_.ProfTag.MPIPOOLCOMMUNICATION

MPI_GATHER_BARRIER

Value:

rosetta.basic._basic_.ProfTag.MPI_GATHER_BARRIER

MPI_JD2_WAITS_FOR_ARCHIVE

Value:

rosetta.basic._basic_.ProfTag.MPI_JD2_WAITS_FOR_ARCHIVE

MPI_MASTER_BCAST_COORDS

Value:

rosetta.basic._basic_.ProfTag.MPI_MASTER_BCAST_COORDS

MPI_MASTER_BCAST_NEW_COMM_SIZE

Value:

rosetta.basic._basic_.ProfTag.MPI_MASTER_BCAST_NEW_COMM_SIZE

MPI_MASTER_BCAST_NEW_POOL_RANKS

Value:

rosetta.basic._basic_.ProfTag.MPI_MASTER_BCAST_NEW_POOL_RANKS

MPI_MASTER_BCAST_NUM_STRUCTURES_TO_ADD

Value:

rosetta.basic._basic_.ProfTag.MPI_MASTER_BCAST_NUM_STRUCTURES_TO_ADD

MPI_MASTER_BCAST_WINNING_RANKS

Value:

rosetta.basic._basic_.ProfTag.MPI_MASTER_BCAST_WINNING_RANKS

MPI_MASTER_BCAST_WINNING_STRUCTURES

Value:

rosetta.basic._basic_.ProfTag.MPI_MASTER_BCAST_WINNING_STRUCTURES

MPI_NOTIFY_ARCHIVE

Value:

rosetta.basic._basic_.ProfTag.MPI_NOTIFY_ARCHIVE

MPI_POOL_MASTER_THINKS

Value:

rosetta.basic._basic_.ProfTag.MPI_POOL_MASTER_THINKS

MPI_POOL_SLAVE_THINKS

Value:

rosetta.basic._basic_.ProfTag.MPI_POOL_SLAVE_THINKS

MPI_SEND_ACCEPTED

Value:

rosetta.basic._basic_.ProfTag.MPI_SEND_ACCEPTED

MPI_SLAVE_REPORT_NEW_COORDS

Value:

rosetta.basic._basic_.ProfTag.MPI_SLAVE_REPORT_NEW_COORDS

MPI_SLAVE_REPORT_SIZES

Value:

rosetta.basic._basic_.ProfTag.MPI_SLAVE_REPORT_SIZES

MPI_SYNC_POOL_DIFF

Value:

rosetta.basic._basic_.ProfTag.MPI_SYNC_POOL_DIFF

NOESY_ASSIGN_CALIBRATE

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_CALIBRATE

NOESY_ASSIGN_CHEMSHIFT

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_CHEMSHIFT

NOESY_ASSIGN_CP_GEN_CST

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_CP_GEN_CST

NOESY_ASSIGN_DECOY_COMP

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DECOY_COMP

NOESY_ASSIGN_DIAGONAL

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DIAGONAL

NOESY_ASSIGN_DISTANCE

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DISTANCE

NOESY_ASSIGN_DIST_APPLY

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DIST_APPLY

NOESY_ASSIGN_DIST_CST_CAST

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DIST_CST_CAST

NOESY_ASSIGN_DIST_CST_EVAL

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DIST_CST_EVAL

NOESY_ASSIGN_DIST_INIT

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DIST_INIT

NOESY_ASSIGN_DIST_MAKE_POSE

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DIST_MAKE_POSE

NOESY_ASSIGN_DIST_PREP_SCORE

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DIST_PREP_SCORE

NOESY_ASSIGN_DIST_SET_COMPABILITY_SCORE

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DIST_SET_COMPABILITY_SCORE

NOESY_ASSIGN_ELIMINATE

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_ELIMINATE

NOESY_ASSIGN_GEN_CST

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_GEN_CST

NOESY_ASSIGN_INITIAL

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_INITIAL

NOESY_ASSIGN_MAP2CB

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_MAP2CB

NOESY_ASSIGN_MAP2CB_NEW

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_MAP2CB_NEW

NOESY_ASSIGN_NETWORK

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NETWORK

NOESY_ASSIGN_NETWORK_COMPUTE_NK

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NETWORK_COMPUTE_NK

NOESY_ASSIGN_NETWORK_FILL_COV_GAMMA

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NETWORK_FILL_COV_GAMMA

NOESY_ASSIGN_NETWORK_FIND_RAW_ASSIGN

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NETWORK_FIND_RAW_ASSIGN

NOESY_ASSIGN_NETWORK_INVALIDATE_SEQ_NOE

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NETWORK_INVALIDATE_SEQ_NOE

NOESY_ASSIGN_NETWORK_PEAK_COUNT

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NETWORK_PEAK_COUNT

NOESY_ASSIGN_NETWORK_PEAK_COUNT_EVAL

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NETWORK_PEAK_COUNT_EVAL

NOESY_ASSIGN_NETWORK_RETRIEVE_ASSIGN

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NETWORK_RETRIEVE_ASSIGN

NOESY_ASSIGN_NETWORK_TOTAL

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NETWORK_TOTAL

NOESY_ASSIGN_NMR_STRING

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NMR_STRING

NOESY_ASSIGN_PA_GEN_CST

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_PA_GEN_CST

NOESY_ASSIGN_READ_INPUT

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_READ_INPUT

NOESY_ASSIGN_REQUIRES_CB_MAPPING

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_REQUIRES_CB_MAPPING

NOESY_ASSIGN_SYMMETRY

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_SYMMETRY

NOESY_ASSIGN_TOTAL

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_TOTAL

NOESY_ASSIGN_UPDATE_PEAK_VOL

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_UPDATE_PEAK_VOL

NOESY_ASSIGN_WRITE_ASSIGNMENTS

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_WRITE_ASSIGNMENTS

NOESY_ASSIGN_WRITE_CST

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_WRITE_CST

POOL_RMSD_ADD_STRUCTURE

Value:

rosetta.basic._basic_.ProfTag.POOL_RMSD_ADD_STRUCTURE

POOL_RMSD_EVALUATE

Value:

rosetta.basic._basic_.ProfTag.POOL_RMSD_EVALUATE

POOL_RMSD_MASTER_EVALUATE

Value:

rosetta.basic._basic_.ProfTag.POOL_RMSD_MASTER_EVALUATE

SCORE_BEGIN_NOTIFY

Value:

rosetta.basic._basic_.ProfTag.SCORE_BEGIN_NOTIFY

SCORE_LONG_RANGE_ENERGIES

Value:

rosetta.basic._basic_.ProfTag.SCORE_LONG_RANGE_ENERGIES

SCORE_NEIGHBOR_ENERGIES

Value:

rosetta.basic._basic_.ProfTag.SCORE_NEIGHBOR_ENERGIES

SCORE_ONEBODY_ENERGIES

Value:

rosetta.basic._basic_.ProfTag.SCORE_ONEBODY_ENERGIES

SECONDARY_STRUCTURE_ENERGY

Value:

rosetta.basic._basic_.ProfTag.SECONDARY_STRUCTURE_ENERGY

SECONDARY_STRUCTURE_HSPAIR_ENERGY

Value:

rosetta.basic._basic_.ProfTag.SECONDARY_STRUCTURE_HSPAIR_ENERGY

SECONDARY_STRUCTURE_SHEETS_FROM_DIMERS_ENERGY

Value:

rosetta.basic._basic_.ProfTag.SECONDARY_STRUCTURE_SHEETS_FROM_DIMERS_E NERGY

SECONDARY_STRUCTURE_SSPAIR_ENERGY

Value:

rosetta.basic._basic_.ProfTag.SECONDARY_STRUCTURE_SSPAIR_ENERGY

SEQUENCE_COMPARISON

Value:

rosetta.basic._basic_.ProfTag.SEQUENCE_COMPARISON

SILENT_FILL_STRUCT

Value:

rosetta.basic._basic_.ProfTag.SILENT_FILL_STRUCT

SILENT_READ_TAG_TEST

Value:

rosetta.basic._basic_.ProfTag.SILENT_READ_TAG_TEST

SILENT_SET_POSE_COORDS

Value:

rosetta.basic._basic_.ProfTag.SILENT_SET_POSE_COORDS

TRUNCATED_SCORE_EVALUATOR

Value:

rosetta.basic._basic_.ProfTag.TRUNCATED_SCORE_EVALUATOR

UPDATE_RESIDUE_COORDINATES

Value:

rosetta.basic._basic_.ProfTag.UPDATE_RESIDUE_COORDINATES

UPDATE_RESIDUE_NEIGHBORS

Value:

rosetta.basic._basic_.ProfTag.UPDATE_RESIDUE_NEIGHBORS

UPDATE_RESIDUE_TORSIONS

Value:

rosetta.basic._basic_.ProfTag.UPDATE_RESIDUE_TORSIONS

WRITE_DECOYS_TO_HIERARCHY

Value:

rosetta.basic._basic_.ProfTag.WRITE_DECOYS_TO_HIERARCHY