Package rosetta :: Package basic

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Package basic

source code

Submodules

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Variables

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ABINITIO = rosetta.basic._basic_.ProfTag.ABINITIO

APPLY_BB_MOVE = rosetta.basic._basic_.ProfTag.APPLY_BB_MOVE

APPLY_MOVE = rosetta.basic._basic_.ProfTag.APPLY_MOVE

APPLY_SC_MOVE = rosetta.basic._basic_.ProfTag.APPLY_SC_MOVE

ARCHIVE_BLOCK_FILE = rosetta.basic._basic_.ProfTag.ARCHIVE_BLO...

ARCHIVE_CRITICAL_JOBSCOMPLETE = rosetta.basic._basic_.ProfTag....

ARCHIVE_EVALUATORS = rosetta.basic._basic_.ProfTag.ARCHIVE_EVA...

ARCHIVE_EVAL_DECOYS = rosetta.basic._basic_.ProfTag.ARCHIVE_EV...

ARCHIVE_FILL_POSE = rosetta.basic._basic_.ProfTag.ARCHIVE_FILL...

ARCHIVE_GEN_BATCH = rosetta.basic._basic_.ProfTag.ARCHIVE_GEN_...

ARCHIVE_JOBSCOMPLETE = rosetta.basic._basic_.ProfTag.ARCHIVE_J...

ARCHIVE_READ_DECOYS = rosetta.basic._basic_.ProfTag.ARCHIVE_RE...

ARCHIVE_SCORE_POSE = rosetta.basic._basic_.ProfTag.ARCHIVE_SCO...

ARCHIVE_SYNC_BATCHES = rosetta.basic._basic_.ProfTag.ARCHIVE_S...

ATOM_TREE_UPDATE_INTERNAL_COORDS = rosetta.basic._basic_.ProfT...

ATOM_TREE_UPDATE_XYZ_COORDS = rosetta.basic._basic_.ProfTag.AT...

BACKRUB_MOVER = rosetta.basic._basic_.ProfTag.BACKRUB_MOVER

CANONICALMOVER_WRITE_TO_FILE = rosetta.basic._basic_.ProfTag.C...

CA_DME_EVALUATION = rosetta.basic._basic_.ProfTag.CA_DME_EVALU...

CA_RMSD_EVALUATION = rosetta.basic._basic_.ProfTag.CA_RMSD_EVA...

CCD_CLOSE = rosetta.basic._basic_.ProfTag.CCD_CLOSE

CHECK_COMM_SIZE = rosetta.basic._basic_.ProfTag.CHECK_COMM_SIZE

CHEMICAL_MAKE_POSE = rosetta.basic._basic_.ProfTag.CHEMICAL_MA...

COMM_REDUCE_SIZE = rosetta.basic._basic_.ProfTag.COMM_REDUCE_SIZE

CONFORMATION_COPY = rosetta.basic._basic_.ProfTag.CONFORMATION...

CONFORMATION_DETECT_DISULF = rosetta.basic._basic_.ProfTag.CON...

CONFORMATION_FIX_DISULF = rosetta.basic._basic_.ProfTag.CONFOR...

CONSTRAINT_SCORE = rosetta.basic._basic_.ProfTag.CONSTRAINT_SCORE

CONSTRAINT_SET_COPY = rosetta.basic._basic_.ProfTag.CONSTRAINT...

CONSTRUCT_DISTANCE_MATRIX = rosetta.basic._basic_.ProfTag.CONS...

COPY_COORDS = rosetta.basic._basic_.ProfTag.COPY_COORDS

DALPHABALL = rosetta.basic._basic_.ProfTag.DALPHABALL

DALPHABALL_DERIV = rosetta.basic._basic_.ProfTag.DALPHABALL_DERIV

DATA_STORAGE = rosetta.basic._basic_.ProfTag.DATA_STORAGE

DFUNC = rosetta.basic._basic_.ProfTag.DFUNC

ENERGIES_COPY = rosetta.basic._basic_.ProfTag.ENERGIES_COPY

ENERGY_ENVPAIR_POTENTIAL = rosetta.basic._basic_.ProfTag.ENERG...

ENERGY_GRAPH_COPY = rosetta.basic._basic_.ProfTag.ENERGY_GRAPH...

FACTS_GET_ALL_BORN_RADII = rosetta.basic._basic_.ProfTag.FACTS...

FACTS_ROTAMER_BACKGROUND_ENERGIES = rosetta.basic._basic_.Prof...

FACTS_ROTAMER_PAIR_ENERGIES = rosetta.basic._basic_.ProfTag.FA...

FACTS_SETUP_FOR_PACKING = rosetta.basic._basic_.ProfTag.FACTS_...

FARRAY_MANIPULATION = rosetta.basic._basic_.ProfTag.FARRAY_MAN...

FINALIZE = rosetta.basic._basic_.ProfTag.FINALIZE

FIND_SUGAR_AND_SUITE_FRAGS_I = rosetta.basic._basic_.ProfTag.F...

FIND_SUGAR_AND_SUITE_FRAGS_II = rosetta.basic._basic_.ProfTag....

FRAGMENTPICKING = rosetta.basic._basic_.ProfTag.FRAGMENTPICKING

FRAGMENTPICKING_ATOMPAIR_SCORE = rosetta.basic._basic_.ProfTag...

FRAGMENTPICKING_CANDIDATES_COLLECTING = rosetta.basic._basic_....

FRAGMENTPICKING_CS_SCORE = rosetta.basic._basic_.ProfTag.FRAGM...

FRAGMENTPICKING_DIHEDRALCONSTR_SCORE = rosetta.basic._basic_.P...

FRAGMENTPICKING_PHIPSI_SCORE = rosetta.basic._basic_.ProfTag.F...

FRAGMENTPICKING_PROFILE_CAHING = rosetta.basic._basic_.ProfTag...

FRAGMENTPICKING_PROFILE_SCORE = rosetta.basic._basic_.ProfTag....

FRAGMENTPICKING_READ_VALL = rosetta.basic._basic_.ProfTag.FRAG...

FRAGMENTPICKING_SECONDARY_SCORE = rosetta.basic._basic_.ProfTa...

FRAGMENT_MOVER = rosetta.basic._basic_.ProfTag.FRAGMENT_MOVER

FUNC = rosetta.basic._basic_.ProfTag.FUNC

GB_GET_ALL_BORN_RADII = rosetta.basic._basic_.ProfTag.GB_GET_A...

GB_SETUP_FOR_PACKING = rosetta.basic._basic_.ProfTag.GB_SETUP_...

GEN_BORN_ROTAMER_BACKGROUND_ENERGIES = rosetta.basic._basic_.P...

GEN_BORN_ROTAMER_PAIR_ENERGIES = rosetta.basic._basic_.ProfTag...

GET_ENERGIES = rosetta.basic._basic_.ProfTag.GET_ENERGIES

HIERARCHICAL_ADD = rosetta.basic._basic_.ProfTag.HIERARCHICAL_ADD

HIERARCHICAL_ADD_ELEM_TO_CACHE = rosetta.basic._basic_.ProfTag...

HIERARCHICAL_EVALUATE = rosetta.basic._basic_.ProfTag.HIERARCH...

HIERARCHICAL_FIND = rosetta.basic._basic_.ProfTag.HIERARCHICAL...

HIERARCHICAL_FIND_ADDRESS = rosetta.basic._basic_.ProfTag.HIER...

HIERARCHICAL_POOL_SIZE = rosetta.basic._basic_.ProfTag.HIERARC...

HIERARCHICAL_ROUND = rosetta.basic._basic_.ProfTag.HIERARCHICA...

HIERARCHICAL_SORT_ADDRESSES = rosetta.basic._basic_.ProfTag.HI...

HIERARCHY_FIND_ADDRESS = rosetta.basic._basic_.ProfTag.HIERARC...

HIERARCHY_GET_NEXT_CANDIDATE = rosetta.basic._basic_.ProfTag.H...

HIERARCHY_RECV_COORDS = rosetta.basic._basic_.ProfTag.HIERARCH...

HIERARCHY_SEND_COORDS = rosetta.basic._basic_.ProfTag.HIERARCH...

HIERARCHY_SETUP_TO_RECV = rosetta.basic._basic_.ProfTag.HIERAR...

INITIALIZE = rosetta.basic._basic_.ProfTag.INITIALIZE

INITIALIZE_HIERARCHY = rosetta.basic._basic_.ProfTag.INITIALIZ...

INSERT_FRAGS = rosetta.basic._basic_.ProfTag.INSERT_FRAGS

JD2 = rosetta.basic._basic_.ProfTag.JD2

JD2_INIT_MOVER = rosetta.basic._basic_.ProfTag.JD2_INIT_MOVER

JD2_OUTPUT = rosetta.basic._basic_.ProfTag.JD2_OUTPUT

JD2_SILENT_OUTPUTTER = rosetta.basic._basic_.ProfTag.JD2_SILEN...

KDTREE_CONSTRUCT = rosetta.basic._basic_.ProfTag.KDTREE_CONSTRUCT

KDTREE_SEARCH = rosetta.basic._basic_.ProfTag.KDTREE_SEARCH

LIB_FULL_PATH = rosetta.basic._basic_.ProfTag.LIB_FULL_PATH

LOAD_HIERARCHY = rosetta.basic._basic_.ProfTag.LOAD_HIERARCHY

MAKE_BASE_PAIR_MOVE = rosetta.basic._basic_.ProfTag.MAKE_BASE_...

MAKE_BASE_STEP_MOVE = rosetta.basic._basic_.ProfTag.MAKE_BASE_...

MASTER_PROCESS_NEW_STRUCTURES = rosetta.basic._basic_.ProfTag....

MC_ACCEPT = rosetta.basic._basic_.ProfTag.MC_ACCEPT

MINMOVER_APPLY = rosetta.basic._basic_.ProfTag.MINMOVER_APPLY

MPIBARRIER = rosetta.basic._basic_.ProfTag.MPIBARRIER

MPIBARRIER_BEGIN = rosetta.basic._basic_.ProfTag.MPIBARRIER_BEGIN

MPIBARRIER_END = rosetta.basic._basic_.ProfTag.MPIBARRIER_END

MPICANONICALSAMPLING = rosetta.basic._basic_.ProfTag.MPICANONI...

MPICOMMCREATION = rosetta.basic._basic_.ProfTag.MPICOMMCREATION

MPIH_ADD_FIRST_STRUCTURE = rosetta.basic._basic_.ProfTag.MPIH_...

MPIH_EVAL_AGAINST_NBR = rosetta.basic._basic_.ProfTag.MPIH_EVA...

MPIH_EVAL_CHECK_PROGRESS = rosetta.basic._basic_.ProfTag.MPIH_...

MPIH_EVAL_COMMUNICATE_NEW = rosetta.basic._basic_.ProfTag.MPIH...

MPIH_PREPARE_WRITE_STRUCTURES = rosetta.basic._basic_.ProfTag....

MPIH_UPDATE_EVAL = rosetta.basic._basic_.ProfTag.MPIH_UPDATE_EVAL

MPIH_WRITE_STRUCT = rosetta.basic._basic_.ProfTag.MPIH_WRITE_S...

MPIPOOLCOMMUNICATION = rosetta.basic._basic_.ProfTag.MPIPOOLCO...

MPI_FILE_BUF = rosetta.basic._basic_.ProfTag.MPI_FILE_BUF

MPI_GATHER_BARRIER = rosetta.basic._basic_.ProfTag.MPI_GATHER_...

MPI_JD2_WAITS_FOR_ARCHIVE = rosetta.basic._basic_.ProfTag.MPI_...

MPI_MASTER_BCAST_COORDS = rosetta.basic._basic_.ProfTag.MPI_MA...

MPI_MASTER_BCAST_NEW_COMM_SIZE = rosetta.basic._basic_.ProfTag...

MPI_MASTER_BCAST_NEW_POOL_RANKS = rosetta.basic._basic_.ProfTa...

MPI_MASTER_BCAST_NUM_STRUCTURES_TO_ADD = rosetta.basic._basic_...

MPI_MASTER_BCAST_WINNING_RANKS = rosetta.basic._basic_.ProfTag...

MPI_MASTER_BCAST_WINNING_STRUCTURES = rosetta.basic._basic_.Pr...

MPI_NOTIFY_ARCHIVE = rosetta.basic._basic_.ProfTag.MPI_NOTIFY_...

MPI_POOL_MASTER_THINKS = rosetta.basic._basic_.ProfTag.MPI_POO...

MPI_POOL_SLAVE_THINKS = rosetta.basic._basic_.ProfTag.MPI_POOL...

MPI_SEND_ACCEPTED = rosetta.basic._basic_.ProfTag.MPI_SEND_ACC...

MPI_SEND_UPDATE = rosetta.basic._basic_.ProfTag.MPI_SEND_UPDATE

MPI_SLAVE_REPORT_NEW_COORDS = rosetta.basic._basic_.ProfTag.MP...

MPI_SLAVE_REPORT_SIZES = rosetta.basic._basic_.ProfTag.MPI_SLA...

MPI_SYNC_POOL_DIFF = rosetta.basic._basic_.ProfTag.MPI_SYNC_PO...

NOESY_ASSIGN_CALIBRATE = rosetta.basic._basic_.ProfTag.NOESY_A...

NOESY_ASSIGN_CHEMSHIFT = rosetta.basic._basic_.ProfTag.NOESY_A...

NOESY_ASSIGN_CP_GEN_CST = rosetta.basic._basic_.ProfTag.NOESY_...

NOESY_ASSIGN_DECOY_COMP = rosetta.basic._basic_.ProfTag.NOESY_...

NOESY_ASSIGN_DIAGONAL = rosetta.basic._basic_.ProfTag.NOESY_AS...

NOESY_ASSIGN_DISTANCE = rosetta.basic._basic_.ProfTag.NOESY_AS...

NOESY_ASSIGN_DIST_APPLY = rosetta.basic._basic_.ProfTag.NOESY_...

NOESY_ASSIGN_DIST_CST_CAST = rosetta.basic._basic_.ProfTag.NOE...

NOESY_ASSIGN_DIST_CST_EVAL = rosetta.basic._basic_.ProfTag.NOE...

NOESY_ASSIGN_DIST_INIT = rosetta.basic._basic_.ProfTag.NOESY_A...

NOESY_ASSIGN_DIST_MAKE_POSE = rosetta.basic._basic_.ProfTag.NO...

NOESY_ASSIGN_DIST_PREP_SCORE = rosetta.basic._basic_.ProfTag.N...

NOESY_ASSIGN_DIST_SET_COMPABILITY_SCORE = rosetta.basic._basic...

NOESY_ASSIGN_ELIMINATE = rosetta.basic._basic_.ProfTag.NOESY_A...

NOESY_ASSIGN_GEN_CST = rosetta.basic._basic_.ProfTag.NOESY_ASS...

NOESY_ASSIGN_INITIAL = rosetta.basic._basic_.ProfTag.NOESY_ASS...

NOESY_ASSIGN_MAP2CB = rosetta.basic._basic_.ProfTag.NOESY_ASSI...

NOESY_ASSIGN_MAP2CB_NEW = rosetta.basic._basic_.ProfTag.NOESY_...

NOESY_ASSIGN_NETWORK = rosetta.basic._basic_.ProfTag.NOESY_ASS...

NOESY_ASSIGN_NETWORK_COMPUTE_NK = rosetta.basic._basic_.ProfTa...

NOESY_ASSIGN_NETWORK_FILL_COV_GAMMA = rosetta.basic._basic_.Pr...

NOESY_ASSIGN_NETWORK_FIND_RAW_ASSIGN = rosetta.basic._basic_.P...

NOESY_ASSIGN_NETWORK_INVALIDATE_SEQ_NOE = rosetta.basic._basic...

NOESY_ASSIGN_NETWORK_PEAK_COUNT = rosetta.basic._basic_.ProfTa...

NOESY_ASSIGN_NETWORK_PEAK_COUNT_EVAL = rosetta.basic._basic_.P...

NOESY_ASSIGN_NETWORK_RETRIEVE_ASSIGN = rosetta.basic._basic_.P...

NOESY_ASSIGN_NETWORK_TOTAL = rosetta.basic._basic_.ProfTag.NOE...

NOESY_ASSIGN_NMR_STRING = rosetta.basic._basic_.ProfTag.NOESY_...

NOESY_ASSIGN_PA_GEN_CST = rosetta.basic._basic_.ProfTag.NOESY_...

NOESY_ASSIGN_READ_INPUT = rosetta.basic._basic_.ProfTag.NOESY_...

NOESY_ASSIGN_REQUIRES_CB_MAPPING = rosetta.basic._basic_.ProfT...

NOESY_ASSIGN_SYMMETRY = rosetta.basic._basic_.ProfTag.NOESY_AS...

NOESY_ASSIGN_TOTAL = rosetta.basic._basic_.ProfTag.NOESY_ASSIG...

NOESY_ASSIGN_UPDATE_PEAK_VOL = rosetta.basic._basic_.ProfTag.N...

NOESY_ASSIGN_WRITE_ASSIGNMENTS = rosetta.basic._basic_.ProfTag...

NOESY_ASSIGN_WRITE_CST = rosetta.basic._basic_.ProfTag.NOESY_A...

PACK_ROTAMERS = rosetta.basic._basic_.ProfTag.PACK_ROTAMERS

POOL_RMSD_ADD_STRUCTURE = rosetta.basic._basic_.ProfTag.POOL_R...

POOL_RMSD_EVALUATE = rosetta.basic._basic_.ProfTag.POOL_RMSD_E...

POOL_RMSD_MASTER_EVALUATE = rosetta.basic._basic_.ProfTag.POOL...

POSE_COPY = rosetta.basic._basic_.ProfTag.POSE_COPY

RG = rosetta.basic._basic_.ProfTag.RG

RG_LOCAL = rosetta.basic._basic_.ProfTag.RG_LOCAL

ROTAMER_TRIALS = rosetta.basic._basic_.ProfTag.ROTAMER_TRIALS

SAVE_ARCHIVE = rosetta.basic._basic_.ProfTag.SAVE_ARCHIVE

SAXS = rosetta.basic._basic_.ProfTag.SAXS

SCORE = rosetta.basic._basic_.ProfTag.SCORE

SCORE_BEGIN_NOTIFY = rosetta.basic._basic_.ProfTag.SCORE_BEGIN...

SCORE_DOT = rosetta.basic._basic_.ProfTag.SCORE_DOT

SCORE_END_NOTIFY = rosetta.basic._basic_.ProfTag.SCORE_END_NOTIFY

SCORE_FINALIZE = rosetta.basic._basic_.ProfTag.SCORE_FINALIZE

SCORE_LONG_RANGE_ENERGIES = rosetta.basic._basic_.ProfTag.SCOR...

SCORE_NEIGHBOR_ENERGIES = rosetta.basic._basic_.ProfTag.SCORE_...

SCORE_ONEBODY_ENERGIES = rosetta.basic._basic_.ProfTag.SCORE_O...

SCORE_SETUP = rosetta.basic._basic_.ProfTag.SCORE_SETUP

SECONDARY_STRUCTURE_ENERGY = rosetta.basic._basic_.ProfTag.SEC...

SECONDARY_STRUCTURE_HSPAIR_ENERGY = rosetta.basic._basic_.Prof...

SECONDARY_STRUCTURE_SHEETS_FROM_DIMERS_ENERGY = rosetta.basic....

SECONDARY_STRUCTURE_SSPAIR_ENERGY = rosetta.basic._basic_.Prof...

SEQUENCE_COMPARISON = rosetta.basic._basic_.ProfTag.SEQUENCE_C...

SETUP_NBLIST = rosetta.basic._basic_.ProfTag.SETUP_NBLIST

SIDECHAINMCMOVER = rosetta.basic._basic_.ProfTag.SIDECHAINMCMOVER

SIDECHAINMOVER = rosetta.basic._basic_.ProfTag.SIDECHAINMOVER

SILENT_FILL_POSE = rosetta.basic._basic_.ProfTag.SILENT_FILL_POSE

SILENT_FILL_STRUCT = rosetta.basic._basic_.ProfTag.SILENT_FILL...

SILENT_READ_TAG_TEST = rosetta.basic._basic_.ProfTag.SILENT_RE...

SILENT_SET_POSE_COORDS = rosetta.basic._basic_.ProfTag.SILENT_...

SIMANNEALING = rosetta.basic._basic_.ProfTag.SIMANNEALING

SIMPLEINTGRAPH = rosetta.basic._basic_.ProfTag.SIMPLEINTGRAPH

SORT_POOL = rosetta.basic._basic_.ProfTag.SORT_POOL

STAGE1 = rosetta.basic._basic_.ProfTag.STAGE1

STAGE2 = rosetta.basic._basic_.ProfTag.STAGE2

STAGE3 = rosetta.basic._basic_.ProfTag.STAGE3

STAGE4 = rosetta.basic._basic_.ProfTag.STAGE4

STAGE5 = rosetta.basic._basic_.ProfTag.STAGE5

TEST1 = rosetta.basic._basic_.ProfTag.TEST1

TEST2 = rosetta.basic._basic_.ProfTag.TEST2

TEST3 = rosetta.basic._basic_.ProfTag.TEST3

TEST4 = rosetta.basic._basic_.ProfTag.TEST4

TEST5 = rosetta.basic._basic_.ProfTag.TEST5

TOTAL = rosetta.basic._basic_.ProfTag.TOTAL

TRUNCATED_SCORE_EVALUATOR = rosetta.basic._basic_.ProfTag.TRUN...

UPDATE_RESIDUE_COORDINATES = rosetta.basic._basic_.ProfTag.UPD...

UPDATE_RESIDUE_NEIGHBORS = rosetta.basic._basic_.ProfTag.UPDAT...

UPDATE_RESIDUE_TORSIONS = rosetta.basic._basic_.ProfTag.UPDATE...

VDW_ENERGY = rosetta.basic._basic_.ProfTag.VDW_ENERGY

WRITE_DECOYS_TO_HIERARCHY = rosetta.basic._basic_.ProfTag.WRIT...

WRITE_TO_FILE = rosetta.basic._basic_.ProfTag.WRITE_TO_FILE

__package__ = 'rosetta.basic'

n_prof_tags = rosetta.basic._basic_.ProfTag.n_prof_tags

t_debug = rosetta.basic._basic_.TracerPriority.t_debug

t_error = rosetta.basic._basic_.TracerPriority.t_error

t_fatal = rosetta.basic._basic_.TracerPriority.t_fatal

t_info = rosetta.basic._basic_.TracerPriority.t_info

t_trace = rosetta.basic._basic_.TracerPriority.t_trace

t_warning = rosetta.basic._basic_.TracerPriority.t_warning

Variables Details

[hide private]

ARCHIVE_BLOCK_FILE

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_BLOCK_FILE

ARCHIVE_CRITICAL_JOBSCOMPLETE

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_CRITICAL_JOBSCOMPLETE

ARCHIVE_EVALUATORS

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_EVALUATORS

ARCHIVE_EVAL_DECOYS

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_EVAL_DECOYS

ARCHIVE_FILL_POSE

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_FILL_POSE

ARCHIVE_GEN_BATCH

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_GEN_BATCH

ARCHIVE_JOBSCOMPLETE

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_JOBSCOMPLETE

ARCHIVE_READ_DECOYS

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_READ_DECOYS

ARCHIVE_SCORE_POSE

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_SCORE_POSE

ARCHIVE_SYNC_BATCHES

Value:

rosetta.basic._basic_.ProfTag.ARCHIVE_SYNC_BATCHES

ATOM_TREE_UPDATE_INTERNAL_COORDS

Value:

rosetta.basic._basic_.ProfTag.ATOM_TREE_UPDATE_INTERNAL_COORDS

ATOM_TREE_UPDATE_XYZ_COORDS

Value:

rosetta.basic._basic_.ProfTag.ATOM_TREE_UPDATE_XYZ_COORDS

CANONICALMOVER_WRITE_TO_FILE

Value:

rosetta.basic._basic_.ProfTag.CANONICALMOVER_WRITE_TO_FILE

CA_DME_EVALUATION

Value:

rosetta.basic._basic_.ProfTag.CA_DME_EVALUATION

CA_RMSD_EVALUATION

Value:

rosetta.basic._basic_.ProfTag.CA_RMSD_EVALUATION

CHEMICAL_MAKE_POSE

Value:

rosetta.basic._basic_.ProfTag.CHEMICAL_MAKE_POSE

CONFORMATION_COPY

Value:

rosetta.basic._basic_.ProfTag.CONFORMATION_COPY

CONFORMATION_DETECT_DISULF

Value:

rosetta.basic._basic_.ProfTag.CONFORMATION_DETECT_DISULF

CONFORMATION_FIX_DISULF

Value:

rosetta.basic._basic_.ProfTag.CONFORMATION_FIX_DISULF

CONSTRAINT_SET_COPY

Value:

rosetta.basic._basic_.ProfTag.CONSTRAINT_SET_COPY

CONSTRUCT_DISTANCE_MATRIX

Value:

rosetta.basic._basic_.ProfTag.CONSTRUCT_DISTANCE_MATRIX

ENERGY_ENVPAIR_POTENTIAL

Value:

rosetta.basic._basic_.ProfTag.ENERGY_ENVPAIR_POTENTIAL

ENERGY_GRAPH_COPY

Value:

rosetta.basic._basic_.ProfTag.ENERGY_GRAPH_COPY

FACTS_GET_ALL_BORN_RADII

Value:

rosetta.basic._basic_.ProfTag.FACTS_GET_ALL_BORN_RADII

FACTS_ROTAMER_BACKGROUND_ENERGIES

Value:

rosetta.basic._basic_.ProfTag.FACTS_ROTAMER_BACKGROUND_ENERGIES

FACTS_ROTAMER_PAIR_ENERGIES

Value:

rosetta.basic._basic_.ProfTag.FACTS_ROTAMER_PAIR_ENERGIES

FACTS_SETUP_FOR_PACKING

Value:

rosetta.basic._basic_.ProfTag.FACTS_SETUP_FOR_PACKING

FARRAY_MANIPULATION

Value:

rosetta.basic._basic_.ProfTag.FARRAY_MANIPULATION

FIND_SUGAR_AND_SUITE_FRAGS_I

Value:

rosetta.basic._basic_.ProfTag.FIND_SUGAR_AND_SUITE_FRAGS_I

FIND_SUGAR_AND_SUITE_FRAGS_II

Value:

rosetta.basic._basic_.ProfTag.FIND_SUGAR_AND_SUITE_FRAGS_II

FRAGMENTPICKING_ATOMPAIR_SCORE

Value:

rosetta.basic._basic_.ProfTag.FRAGMENTPICKING_ATOMPAIR_SCORE

FRAGMENTPICKING_CANDIDATES_COLLECTING

Value:

rosetta.basic._basic_.ProfTag.FRAGMENTPICKING_CANDIDATES_COLLECTING

FRAGMENTPICKING_CS_SCORE

Value:

rosetta.basic._basic_.ProfTag.FRAGMENTPICKING_CS_SCORE

FRAGMENTPICKING_DIHEDRALCONSTR_SCORE

Value:

rosetta.basic._basic_.ProfTag.FRAGMENTPICKING_DIHEDRALCONSTR_SCORE

FRAGMENTPICKING_PHIPSI_SCORE

Value:

rosetta.basic._basic_.ProfTag.FRAGMENTPICKING_PHIPSI_SCORE

FRAGMENTPICKING_PROFILE_CAHING

Value:

rosetta.basic._basic_.ProfTag.FRAGMENTPICKING_PROFILE_CAHING

FRAGMENTPICKING_PROFILE_SCORE

Value:

rosetta.basic._basic_.ProfTag.FRAGMENTPICKING_PROFILE_SCORE

FRAGMENTPICKING_READ_VALL

Value:

rosetta.basic._basic_.ProfTag.FRAGMENTPICKING_READ_VALL

FRAGMENTPICKING_SECONDARY_SCORE

Value:

rosetta.basic._basic_.ProfTag.FRAGMENTPICKING_SECONDARY_SCORE

GB_GET_ALL_BORN_RADII

Value:

rosetta.basic._basic_.ProfTag.GB_GET_ALL_BORN_RADII

GB_SETUP_FOR_PACKING

Value:

rosetta.basic._basic_.ProfTag.GB_SETUP_FOR_PACKING

GEN_BORN_ROTAMER_BACKGROUND_ENERGIES

Value:

rosetta.basic._basic_.ProfTag.GEN_BORN_ROTAMER_BACKGROUND_ENERGIES

GEN_BORN_ROTAMER_PAIR_ENERGIES

Value:

rosetta.basic._basic_.ProfTag.GEN_BORN_ROTAMER_PAIR_ENERGIES

HIERARCHICAL_ADD_ELEM_TO_CACHE

Value:

rosetta.basic._basic_.ProfTag.HIERARCHICAL_ADD_ELEM_TO_CACHE

HIERARCHICAL_EVALUATE

Value:

rosetta.basic._basic_.ProfTag.HIERARCHICAL_EVALUATE

HIERARCHICAL_FIND

Value:

rosetta.basic._basic_.ProfTag.HIERARCHICAL_FIND

HIERARCHICAL_FIND_ADDRESS

Value:

rosetta.basic._basic_.ProfTag.HIERARCHICAL_FIND_ADDRESS

HIERARCHICAL_POOL_SIZE

Value:

rosetta.basic._basic_.ProfTag.HIERARCHICAL_POOL_SIZE

HIERARCHICAL_ROUND

Value:

rosetta.basic._basic_.ProfTag.HIERARCHICAL_ROUND

HIERARCHICAL_SORT_ADDRESSES

Value:

rosetta.basic._basic_.ProfTag.HIERARCHICAL_SORT_ADDRESSES

HIERARCHY_FIND_ADDRESS

Value:

rosetta.basic._basic_.ProfTag.HIERARCHY_FIND_ADDRESS

HIERARCHY_GET_NEXT_CANDIDATE

Value:

rosetta.basic._basic_.ProfTag.HIERARCHY_GET_NEXT_CANDIDATE

HIERARCHY_RECV_COORDS

Value:

rosetta.basic._basic_.ProfTag.HIERARCHY_RECV_COORDS

HIERARCHY_SEND_COORDS

Value:

rosetta.basic._basic_.ProfTag.HIERARCHY_SEND_COORDS

HIERARCHY_SETUP_TO_RECV

Value:

rosetta.basic._basic_.ProfTag.HIERARCHY_SETUP_TO_RECV

INITIALIZE_HIERARCHY

Value:

rosetta.basic._basic_.ProfTag.INITIALIZE_HIERARCHY

JD2_SILENT_OUTPUTTER

Value:

rosetta.basic._basic_.ProfTag.JD2_SILENT_OUTPUTTER

MAKE_BASE_PAIR_MOVE

Value:

rosetta.basic._basic_.ProfTag.MAKE_BASE_PAIR_MOVE

MAKE_BASE_STEP_MOVE

Value:

rosetta.basic._basic_.ProfTag.MAKE_BASE_STEP_MOVE

MASTER_PROCESS_NEW_STRUCTURES

Value:

rosetta.basic._basic_.ProfTag.MASTER_PROCESS_NEW_STRUCTURES

MPICANONICALSAMPLING

Value:

rosetta.basic._basic_.ProfTag.MPICANONICALSAMPLING

MPIH_ADD_FIRST_STRUCTURE

Value:

rosetta.basic._basic_.ProfTag.MPIH_ADD_FIRST_STRUCTURE

MPIH_EVAL_AGAINST_NBR

Value:

rosetta.basic._basic_.ProfTag.MPIH_EVAL_AGAINST_NBR

MPIH_EVAL_CHECK_PROGRESS

Value:

rosetta.basic._basic_.ProfTag.MPIH_EVAL_CHECK_PROGRESS

MPIH_EVAL_COMMUNICATE_NEW

Value:

rosetta.basic._basic_.ProfTag.MPIH_EVAL_COMMUNICATE_NEW

MPIH_PREPARE_WRITE_STRUCTURES

Value:

rosetta.basic._basic_.ProfTag.MPIH_PREPARE_WRITE_STRUCTURES

MPIH_WRITE_STRUCT

Value:

rosetta.basic._basic_.ProfTag.MPIH_WRITE_STRUCT

MPIPOOLCOMMUNICATION

Value:

rosetta.basic._basic_.ProfTag.MPIPOOLCOMMUNICATION

MPI_GATHER_BARRIER

Value:

rosetta.basic._basic_.ProfTag.MPI_GATHER_BARRIER

MPI_JD2_WAITS_FOR_ARCHIVE

Value:

rosetta.basic._basic_.ProfTag.MPI_JD2_WAITS_FOR_ARCHIVE

MPI_MASTER_BCAST_COORDS

Value:

rosetta.basic._basic_.ProfTag.MPI_MASTER_BCAST_COORDS

MPI_MASTER_BCAST_NEW_COMM_SIZE

Value:

rosetta.basic._basic_.ProfTag.MPI_MASTER_BCAST_NEW_COMM_SIZE

MPI_MASTER_BCAST_NEW_POOL_RANKS

Value:

rosetta.basic._basic_.ProfTag.MPI_MASTER_BCAST_NEW_POOL_RANKS

MPI_MASTER_BCAST_NUM_STRUCTURES_TO_ADD

Value:

rosetta.basic._basic_.ProfTag.MPI_MASTER_BCAST_NUM_STRUCTURES_TO_ADD

MPI_MASTER_BCAST_WINNING_RANKS

Value:

rosetta.basic._basic_.ProfTag.MPI_MASTER_BCAST_WINNING_RANKS

MPI_MASTER_BCAST_WINNING_STRUCTURES

Value:

rosetta.basic._basic_.ProfTag.MPI_MASTER_BCAST_WINNING_STRUCTURES

MPI_NOTIFY_ARCHIVE

Value:

rosetta.basic._basic_.ProfTag.MPI_NOTIFY_ARCHIVE

MPI_POOL_MASTER_THINKS

Value:

rosetta.basic._basic_.ProfTag.MPI_POOL_MASTER_THINKS

MPI_POOL_SLAVE_THINKS

Value:

rosetta.basic._basic_.ProfTag.MPI_POOL_SLAVE_THINKS

MPI_SEND_ACCEPTED

Value:

rosetta.basic._basic_.ProfTag.MPI_SEND_ACCEPTED

MPI_SLAVE_REPORT_NEW_COORDS

Value:

rosetta.basic._basic_.ProfTag.MPI_SLAVE_REPORT_NEW_COORDS

MPI_SLAVE_REPORT_SIZES

Value:

rosetta.basic._basic_.ProfTag.MPI_SLAVE_REPORT_SIZES

MPI_SYNC_POOL_DIFF

Value:

rosetta.basic._basic_.ProfTag.MPI_SYNC_POOL_DIFF

NOESY_ASSIGN_CALIBRATE

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_CALIBRATE

NOESY_ASSIGN_CHEMSHIFT

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_CHEMSHIFT

NOESY_ASSIGN_CP_GEN_CST

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_CP_GEN_CST

NOESY_ASSIGN_DECOY_COMP

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DECOY_COMP

NOESY_ASSIGN_DIAGONAL

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DIAGONAL

NOESY_ASSIGN_DISTANCE

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DISTANCE

NOESY_ASSIGN_DIST_APPLY

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DIST_APPLY

NOESY_ASSIGN_DIST_CST_CAST

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DIST_CST_CAST

NOESY_ASSIGN_DIST_CST_EVAL

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DIST_CST_EVAL

NOESY_ASSIGN_DIST_INIT

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DIST_INIT

NOESY_ASSIGN_DIST_MAKE_POSE

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DIST_MAKE_POSE

NOESY_ASSIGN_DIST_PREP_SCORE

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DIST_PREP_SCORE

NOESY_ASSIGN_DIST_SET_COMPABILITY_SCORE

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_DIST_SET_COMPABILITY_SCORE

NOESY_ASSIGN_ELIMINATE

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_ELIMINATE

NOESY_ASSIGN_GEN_CST

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_GEN_CST

NOESY_ASSIGN_INITIAL

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_INITIAL

NOESY_ASSIGN_MAP2CB

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_MAP2CB

NOESY_ASSIGN_MAP2CB_NEW

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_MAP2CB_NEW

NOESY_ASSIGN_NETWORK

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NETWORK

NOESY_ASSIGN_NETWORK_COMPUTE_NK

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NETWORK_COMPUTE_NK

NOESY_ASSIGN_NETWORK_FILL_COV_GAMMA

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NETWORK_FILL_COV_GAMMA

NOESY_ASSIGN_NETWORK_FIND_RAW_ASSIGN

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NETWORK_FIND_RAW_ASSIGN

NOESY_ASSIGN_NETWORK_INVALIDATE_SEQ_NOE

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NETWORK_INVALIDATE_SEQ_NOE

NOESY_ASSIGN_NETWORK_PEAK_COUNT

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NETWORK_PEAK_COUNT

NOESY_ASSIGN_NETWORK_PEAK_COUNT_EVAL

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NETWORK_PEAK_COUNT_EVAL

NOESY_ASSIGN_NETWORK_RETRIEVE_ASSIGN

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NETWORK_RETRIEVE_ASSIGN

NOESY_ASSIGN_NETWORK_TOTAL

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NETWORK_TOTAL

NOESY_ASSIGN_NMR_STRING

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_NMR_STRING

NOESY_ASSIGN_PA_GEN_CST

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_PA_GEN_CST

NOESY_ASSIGN_READ_INPUT

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_READ_INPUT

NOESY_ASSIGN_REQUIRES_CB_MAPPING

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_REQUIRES_CB_MAPPING

NOESY_ASSIGN_SYMMETRY

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_SYMMETRY

NOESY_ASSIGN_TOTAL

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_TOTAL

NOESY_ASSIGN_UPDATE_PEAK_VOL

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_UPDATE_PEAK_VOL

NOESY_ASSIGN_WRITE_ASSIGNMENTS

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_WRITE_ASSIGNMENTS

NOESY_ASSIGN_WRITE_CST

Value:

rosetta.basic._basic_.ProfTag.NOESY_ASSIGN_WRITE_CST

POOL_RMSD_ADD_STRUCTURE

Value:

rosetta.basic._basic_.ProfTag.POOL_RMSD_ADD_STRUCTURE

POOL_RMSD_EVALUATE

Value:

rosetta.basic._basic_.ProfTag.POOL_RMSD_EVALUATE

POOL_RMSD_MASTER_EVALUATE

Value:

rosetta.basic._basic_.ProfTag.POOL_RMSD_MASTER_EVALUATE

SCORE_BEGIN_NOTIFY

Value:

rosetta.basic._basic_.ProfTag.SCORE_BEGIN_NOTIFY

SCORE_LONG_RANGE_ENERGIES

Value:

rosetta.basic._basic_.ProfTag.SCORE_LONG_RANGE_ENERGIES

SCORE_NEIGHBOR_ENERGIES

Value:

rosetta.basic._basic_.ProfTag.SCORE_NEIGHBOR_ENERGIES

SCORE_ONEBODY_ENERGIES

Value:

rosetta.basic._basic_.ProfTag.SCORE_ONEBODY_ENERGIES

SECONDARY_STRUCTURE_ENERGY

Value:

rosetta.basic._basic_.ProfTag.SECONDARY_STRUCTURE_ENERGY

SECONDARY_STRUCTURE_HSPAIR_ENERGY

Value:

rosetta.basic._basic_.ProfTag.SECONDARY_STRUCTURE_HSPAIR_ENERGY

SECONDARY_STRUCTURE_SHEETS_FROM_DIMERS_ENERGY

Value:

rosetta.basic._basic_.ProfTag.SECONDARY_STRUCTURE_SHEETS_FROM_DIMERS_E
NERGY

SECONDARY_STRUCTURE_SSPAIR_ENERGY

Value:

rosetta.basic._basic_.ProfTag.SECONDARY_STRUCTURE_SSPAIR_ENERGY

SEQUENCE_COMPARISON

Value:

rosetta.basic._basic_.ProfTag.SEQUENCE_COMPARISON

SILENT_FILL_STRUCT

Value:

rosetta.basic._basic_.ProfTag.SILENT_FILL_STRUCT

SILENT_READ_TAG_TEST

Value:

rosetta.basic._basic_.ProfTag.SILENT_READ_TAG_TEST

SILENT_SET_POSE_COORDS

Value:

rosetta.basic._basic_.ProfTag.SILENT_SET_POSE_COORDS

TRUNCATED_SCORE_EVALUATOR

Value:

rosetta.basic._basic_.ProfTag.TRUNCATED_SCORE_EVALUATOR

UPDATE_RESIDUE_COORDINATES

Value:

rosetta.basic._basic_.ProfTag.UPDATE_RESIDUE_COORDINATES

UPDATE_RESIDUE_NEIGHBORS

Value:

rosetta.basic._basic_.ProfTag.UPDATE_RESIDUE_NEIGHBORS

UPDATE_RESIDUE_TORSIONS

Value:

rosetta.basic._basic_.ProfTag.UPDATE_RESIDUE_TORSIONS

WRITE_DECOYS_TO_HIERARCHY

Value:

rosetta.basic._basic_.ProfTag.WRITE_DECOYS_TO_HIERARCHY