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J
j()
(in
BasePairStep
)
JobOutputterFactoryCAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
jump_point()
(in
FoldTree
)
j()
(in
Contact
)
JobOutputterObserver
(in
rosetta.protocols.jd2._protocols_jd2_
)
Jump_pointAP
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
j_next()
(in
BasePairStep
)
JobOutputterObserverAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
Jump_pointCAP
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
Jcomputed()
(in
RDC
)
JobOutputterObserverCAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
jump_res_map()
(in
FullModelInfo
)
JCoupling
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
join()
(in
CClusterSet
)
jump_sample()
(in
JumpSampleData
)
JCouplingAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
join()
(in
PClusterSet
)
jump_set()
(in
OligomericAverageDegreeFilter
)
JCouplingCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
join()
(in
rosetta.utility._utility_
)
JUMP_TO_NEXT_IN_CHAIN
(in
rosetta.protocols.stepwise.monte_carlo.mover
)
JCouplingIO
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
)
join_two_poses_by_jump()
(in
MotifGraftMover
)
JUMP_TO_NEXT_IN_CHAIN
(in
AttachmentType
)
JCouplingIOAP
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
)
JointScore
(in
rosetta.protocols.sic_dock._protocols_sic_dock_
)
JUMP_TO_NEXT_IN_CHAIN
(in
rosetta.protocols.stepwise.monte_carlo.mover._protocols_stepwise_monte_carlo_mover_
)
JCouplingIOCAP
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
)
JointScoreAP
(in
rosetta.protocols.sic_dock._protocols_sic_dock_
)
JUMP_TO_PREV_IN_CHAIN
(in
rosetta.protocols.stepwise.monte_carlo.mover
)
JD2
(in
rosetta.basic
)
JointScoreCAP
(in
rosetta.protocols.sic_dock._protocols_sic_dock_
)
JUMP_TO_PREV_IN_CHAIN
(in
AttachmentType
)
JD2
(in
rosetta.basic._basic_
)
JointSequenceOperation
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
JUMP_TO_PREV_IN_CHAIN
(in
rosetta.protocols.stepwise.monte_carlo.mover._protocols_stepwise_monte_carlo_mover_
)
JD2
(in
ProfTag
)
JointSequenceOperationAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
JumpAP
(in
rosetta.core.kinematics._core_kinematics_
)
jd2
(in
rosetta.protocols
)
JointSequenceOperationCAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
JumpAtom
(in
rosetta.core.kinematics.tree._core_kinematics_tree_
)
JD2_INIT_MOVER
(in
rosetta.basic
)
JointSequenceOperationCreator
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
JumpAtomAP
(in
rosetta.core.kinematics.tree._core_kinematics_tree_
)
JD2_INIT_MOVER
(in
rosetta.basic._basic_
)
JointSequenceOperationCreatorAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
JumpAtomCAP
(in
rosetta.core.kinematics.tree._core_kinematics_tree_
)
JD2_INIT_MOVER
(in
ProfTag
)
JointSequenceOperationCreatorCAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
jumpAtoms()
(in
ResiduePairJump
)
JD2_OUTPUT
(in
rosetta.basic
)
JScoreEvaluator
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
jumpAtoms()
(in
ResiduePairJumpSingle
)
JD2_OUTPUT
(in
rosetta.basic._basic_
)
JScoreEvaluatorAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
jumpAtoms_defined()
(in
ResiduePairJump
)
JD2_OUTPUT
(in
ProfTag
)
JScoreEvaluatorCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
jumpAtoms_defined()
(in
ResiduePairJumpSingle
)
JD2_SILENT_OUTPUTTER
(in
rosetta.basic
)
JScoreEvaluatorCreator
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
JumpCAP
(in
rosetta.core.kinematics._core_kinematics_
)
JD2_SILENT_OUTPUTTER
(in
rosetta.basic._basic_
)
JScoreEvaluatorCreatorAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
JumpClaim
(in
rosetta.protocols.environment.claims._protocols_environment_claims_
)
JD2_SILENT_OUTPUTTER
(in
ProfTag
)
JScoreEvaluatorCreatorCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
JumpClaim
(in
rosetta.protocols.topology_broker.claims._protocols_topology_broker_claims_
)
jd2_used()
(in
rosetta.protocols.jd2._protocols_jd2_
)
JSON_RPC
(in
rosetta.protocols.rpc._protocols_rpc_
)
JumpClaimAP
(in
rosetta.protocols.environment.claims._protocols_environment_claims_
)
JD2ResourceManager
(in
rosetta.protocols.jd2._protocols_jd2_
)
JSON_RPCAP
(in
rosetta.protocols.rpc._protocols_rpc_
)
JumpClaimAP
(in
rosetta.protocols.topology_broker.claims._protocols_topology_broker_claims_
)
JD2ResourceManagerAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
JSON_RPCCAP
(in
rosetta.protocols.rpc._protocols_rpc_
)
JumpClaimCAP
(in
rosetta.protocols.environment.claims._protocols_environment_claims_
)
JD2ResourceManagerCAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
json_spirit
(in
rosetta.utility
)
JumpClaimCAP
(in
rosetta.protocols.topology_broker.claims._protocols_topology_broker_claims_
)
JD2ResourceManagerCreator
(in
rosetta.protocols.jd2._protocols_jd2_
)
JsonEmitter
(in
rosetta.basic._basic_
)
JumpDownstreamSelector
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
)
JD2ResourceManagerCreatorAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
JsonEmitterAP
(in
rosetta.basic._basic_
)
JumpDownstreamSelectorAP
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
)
JD2ResourceManagerCreatorCAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
JsonEmitterCAP
(in
rosetta.basic._basic_
)
JumpDownstreamSelectorCAP
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
)
JD2ResourceManagerJobInputter
(in
rosetta.protocols.jd2._protocols_jd2_
)
JSONFormattedLoopsFileReader
(in
rosetta.protocols.loops._protocols_loops_
)
JumpDownstreamSelectorCreator
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
)
JD2ResourceManagerJobInputterAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
JSONFormattedLoopsFileReaderAP
(in
rosetta.protocols.loops._protocols_loops_
)
JumpDownstreamSelectorCreatorAP
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
)
JD2ResourceManagerJobInputterCAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
JSONFormattedLoopsFileReaderCAP
(in
rosetta.protocols.loops._protocols_loops_
)
JumpDownstreamSelectorCreatorCAP
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
)
JD2ResourceManagerJobInputterCreator
(in
rosetta.protocols.jd2._protocols_jd2_
)
judge_facing()
(in
StrandBundleFeatures
)
JumpElement
(in
rosetta.protocols.environment.claims._protocols_environment_claims_
)
JD2ResourceManagerJobInputterCreatorAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
judge_facing()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
JumpElementAP
(in
rosetta.protocols.environment.claims._protocols_environment_claims_
)
JD2ResourceManagerJobInputterCreatorCAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
judge_sw_dis_too_close()
(in
StrandBundleFeatures
)
JumpElementCAP
(in
rosetta.protocols.environment.claims._protocols_environment_claims_
)
Jdipolar()
(in
RDC
)
judge_sw_inter_dis()
(in
StrandBundleFeatures
)
JumpEvaluator
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
Jdipolar()
(in
RDC_Rohl
)
judge_sw_torsion()
(in
StrandBundleFeatures
)
JumpEvaluatorAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
JJH_Minimizer
(in
rosetta.core.optimization._core_optimization_
)
JUMP
(in
rosetta
)
JumpEvaluatorCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
JJH_MinimizerAP
(in
rosetta.core.optimization._core_optimization_
)
JUMP
(in
rosetta.core.id
)
JumpID
(in
rosetta.core.id._core_id_
)
JJH_MinimizerCAP
(in
rosetta.core.optimization._core_optimization_
)
JUMP
(in
rosetta.core.id._core_id_
)
JumpIDAP
(in
rosetta.core.id._core_id_
)
Job
(in
rosetta.protocols.jd2._protocols_jd2_
)
JUMP
(in
TorsionType
)
JumpIDCAP
(in
rosetta.core.id._core_id_
)
job_failed()
(in
MPIFileBufJobDistributor
)
Jump
(in
rosetta.core.kinematics._core_kinematics_
)
jumping
(in
rosetta.protocols
)
job_failed()
(in
MPIMultiCommJobDistributor
)
JUMP
(in
rosetta.core.pose.full_model_info
)
JumpingFoldConstraintsWrapper
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
job_failed()
(in
MSDJobDistributor
)
JUMP
(in
FullModelParameterType
)
JumpingFoldConstraintsWrapperAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
JOB_GO_TAG
(in
rosetta.protocols.jd2
)
JUMP
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
JumpingFoldConstraintsWrapperCAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
JOB_GO_TAG
(in
rosetta.protocols.jd2._protocols_jd2_
)
JUMP
(in
rosetta.protocols.stepwise.sampler
)
JumpingFrame
(in
rosetta.core.fragment._core_fragment_
)
JOB_GO_TAG
(in
mpi_tags
)
JUMP
(in
rosetta.protocols.stepwise.sampler._protocols_stepwise_sampler_
)
JumpingFrameAP
(in
rosetta.core.fragment._core_fragment_
)
job_has_completed()
(in
PDBOutput
)
JUMP
(in
StepWiseSamplerType
)
JumpingFrameCAP
(in
rosetta.core.fragment._core_fragment_
)
job_has_completed()
(in
DatabaseJobOutputter
)
jump()
(in
Conformation
)
JumpNrEvaluator
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
job_has_completed()
(in
AtomTreeDiffJobOutputter
)
jump()
(in
BinarySilentStruct
)
JumpNrEvaluatorAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
job_has_completed()
(in
FileJobOutputter
)
jump()
(in
RNA_SilentStruct
)
JumpNrEvaluatorCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
job_has_completed()
(in
JobOutputter
)
jump()
(in
RigidBodySilentStruct
)
JumpNrEvaluatorCreator
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
job_has_completed()
(in
NoOutputJobOutputter
)
jump()
(in
ScoreJumpFileSilentStruct
)
JumpNrEvaluatorCreatorAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
job_has_completed()
(in
PDBJobOutputter
)
jump()
(in
AtomTree
)
JumpNrEvaluatorCreatorCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
job_has_completed()
(in
ScoreOnlyJobOutputter
)
jump()
(in
Atom
)
JumpOutMover
(in
rosetta.protocols.moves._protocols_moves_
)
job_has_completed()
(in
SilentFileJobOutputter
)
jump()
(in
BondedAtom
)
JumpOutMoverAP
(in
rosetta.protocols.moves._protocols_moves_
)
job_id()
(in
DbTrajectoryRecorder
)
jump()
(in
JumpAtom
)
JumpOutMoverCAP
(in
rosetta.protocols.moves._protocols_moves_
)
job_inputter()
(in
JobDistributor
)
jump()
(in
Pose
)
JumpRotamerSidechainMover
(in
rosetta.protocols.simple_moves.sidechain_moves._protocols_simple_moves_sidechain_moves_
)
job_inputter_input_source()
(in
JobDistributor
)
jump()
(in
VirtResClaim
)
JumpRotamerSidechainMoverAP
(in
rosetta.protocols.simple_moves.sidechain_moves._protocols_simple_moves_sidechain_moves_
)
job_inputter_input_source_to_string()
(in
JobInputter
)
jump()
(in
RNA_PairingTemplate
)
JumpRotamerSidechainMoverCAP
(in
rosetta.protocols.simple_moves.sidechain_moves._protocols_simple_moves_sidechain_moves_
)
job_outputter()
(in
JobDistributor
)
jump()
(in
BindingStrainFilter
)
JumpRotamerSidechainMoverCreator
(in
rosetta.protocols.simple_moves.sidechain_moves._protocols_simple_moves_sidechain_moves_
)
job_succeeded()
(in
MPIFileBufJobDistributor
)
jump()
(in
FilterScanFilter
)
JumpRotamerSidechainMoverCreatorAP
(in
rosetta.protocols.simple_moves.sidechain_moves._protocols_simple_moves_sidechain_moves_
)
job_succeeded()
(in
MPIMultiCommJobDistributor
)
jump()
(in
Interface
)
JumpRotamerSidechainMoverCreatorCAP
(in
rosetta.protocols.simple_moves.sidechain_moves._protocols_simple_moves_sidechain_moves_
)
job_succeeded()
(in
MPIWorkPoolJobDistributor
)
jump()
(in
AlaScan
)
jumps()
(in
JumpSample
)
JOB_SUCCESS_TAG
(in
rosetta.protocols.jd2
)
jump()
(in
DeltaFilter
)
jumps()
(in
InterfaceSasaFilter
)
JOB_SUCCESS_TAG
(in
rosetta.protocols.jd2._protocols_jd2_
)
jump()
(in
InterfaceSasaFilter
)
jumps_and_cuts_from_pose()
(in
rosetta.protocols.forge.methods._protocols_forge_methods_
)
JOB_SUCCESS_TAG
(in
mpi_tags
)
jump()
(in
NonSequentialNeighborsFilter
)
jumps_connected_to_position()
(in
rosetta.protocols.forge.methods._protocols_forge_methods_
)
JobAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
jump()
(in
SSMotifFinder
)
jumps_from_pose()
(in
rosetta.core.pose._core_pose_
)
JobCAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
jump()
(in
TaskAwareScoreTypeFilter
)
JumpSample
(in
rosetta.protocols.jumping._protocols_jumping_
)
JobDataFeatures
(in
rosetta.protocols.features._protocols_features_
)
jump()
(in
TaskAwareMinMover
)
JumpSampleAP
(in
rosetta.protocols.jumping._protocols_jumping_
)
JobDataFeaturesAP
(in
rosetta.protocols.features._protocols_features_
)
jump()
(in
ProteinInterfaceDesignOperation
)
JumpSampleCAP
(in
rosetta.protocols.jumping._protocols_jumping_
)
JobDataFeaturesCAP
(in
rosetta.protocols.features._protocols_features_
)
jump_atom()
(in
JumpClaim
)
JumpSampleData
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
JobDataFeaturesCreator
(in
rosetta.protocols.features._protocols_features_
)
jump_atom1()
(in
JumpClaim
)
JumpSampleDataAP
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
JobDataFeaturesCreatorAP
(in
rosetta.protocols.features._protocols_features_
)
jump_atom2()
(in
JumpClaim
)
JumpSampleDataCAP
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
JobDataFeaturesCreatorCAP
(in
rosetta.protocols.features._protocols_features_
)
jump_atom_id()
(in
Conformation
)
JumpSampleDataCreator
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
jobdist
(in
rosetta.protocols
)
jump_atoms()
(in
JumpSample
)
JumpSampleDataCreatorAP
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
JOBDIST_OUTPUT_TAG
(in
Enum
)
jump_backward()
(in
RNA_PairingTemplate
)
JumpSampleDataCreatorCAP
(in
rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
)
JOBDIST_OUTPUT_TAG
(in
CacheableDataType
)
jump_change_frequency()
(in
RNA_DeNovoProtocol
)
JumpSelector
(in
rosetta.protocols.jumping._protocols_jumping_
)
JobDistributor
(in
rosetta.protocols.jd2._protocols_jd2_
)
jump_clones()
(in
SymmetryInfo
)
JumpSelectorAP
(in
rosetta.protocols.jumping._protocols_jumping_
)
JobDistributorAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
jump_direction()
(in
SymDof
)
JumpSelectorCAP
(in
rosetta.protocols.jumping._protocols_jumping_
)
JobDistributorCAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
jump_distance()
(in
rosetta.core.kinematics._core_kinematics_
)
JumpSetup
(in
rosetta.protocols.jumping._protocols_jumping_
)
JobDistributorFactory
(in
rosetta.protocols.jd2._protocols_jd2_
)
JUMP_DOCK
(in
rosetta.protocols.stepwise.monte_carlo.mover
)
JumpSetupAP
(in
rosetta.protocols.jumping._protocols_jumping_
)
JobDistributorFactoryAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
JUMP_DOCK
(in
AttachmentType
)
JumpSetupCAP
(in
rosetta.protocols.jumping._protocols_jumping_
)
JobDistributorFactoryCAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
JUMP_DOCK
(in
rosetta.protocols.stepwise.monte_carlo.mover._protocols_stepwise_monte_carlo_mover_
)
JumpsFromAllPairings
(in
rosetta.protocols.jumping._protocols_jumping_
)
JobInputter
(in
rosetta.protocols.jd2._protocols_jd2_
)
jump_edge()
(in
FoldTree
)
JumpsFromAllPairingsAP
(in
rosetta.protocols.jumping._protocols_jumping_
)
JobInputterAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
jump_exists()
(in
FoldTree
)
JumpsFromAllPairingsCAP
(in
rosetta.protocols.jumping._protocols_jumping_
)
JobInputterCAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
jump_follows()
(in
SymmetryInfo
)
JumpStepWiseSampler
(in
rosetta.protocols.stepwise.sampler._protocols_stepwise_sampler_
)
JobInputterCreator
(in
rosetta.protocols.jd2._protocols_jd2_
)
jump_forward()
(in
RNA_PairingTemplate
)
JumpStepWiseSamplerAP
(in
rosetta.protocols.stepwise.sampler._protocols_stepwise_sampler_
)
JobInputterCreatorAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
jump_id()
(in
DockingEnsemble
)
JumpStepWiseSamplerCAP
(in
rosetta.protocols.stepwise.sampler._protocols_stepwise_sampler_
)
JobInputterCreatorCAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
jump_id()
(in
GetRBDOFValues
)
JumpUpstreamSelector
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
)
JobInputterFactory
(in
rosetta.protocols.jd2._protocols_jd2_
)
jump_id()
(in
OligomericAverageDegreeFilter
)
JumpUpstreamSelectorAP
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
)
JobInputterFactoryAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
jump_id()
(in
Interface
)
JumpUpstreamSelectorCAP
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
)
JobInputterFactoryCAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
jump_id()
(in
ShapeComplementarityFilter
)
JumpUpstreamSelectorCreator
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
)
JobOptions
(in
rosetta.basic.resource_manager._basic_resource_manager_
)
jump_id()
(in
TaskAwareSASAFilter
)
JumpUpstreamSelectorCreatorAP
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
)
JobOptionsAP
(in
rosetta.basic.resource_manager._basic_resource_manager_
)
jump_id_begin()
(in
MoveMap
)
JumpUpstreamSelectorCreatorCAP
(in
rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
)
JobOptionsCAP
(in
rosetta.basic.resource_manager._basic_resource_manager_
)
jump_id_end()
(in
MoveMap
)
just_min_after_mutation_frequency()
(in
StepWiseMonteCarloOptions
)
JobOutputter
(in
rosetta.protocols.jd2._protocols_jd2_
)
jump_is_independent()
(in
SymmetryInfo
)
just_modeling_RNA()
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
JobOutputterAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
jump_mover()
(in
KinematicControl
)
just_modeling_RNA()
(in
rosetta.protocols.stepwise.setup._protocols_stepwise_setup_
)
JobOutputterCAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
jump_nr()
(in
FoldTree
)
just_protein()
(in
rosetta.protocols.stepwise.modeler.protein._protocols_stepwise_modeler_protein_
)
JobOutputterCreator
(in
rosetta.protocols.jd2._protocols_jd2_
)
jump_num()
(in
SymUnsatHbondFilter
)
just_rna()
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
JobOutputterCreatorAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
jump_num_sym_dof()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
just_simple_cycles()
(in
StepWiseMoveSelector
)
JobOutputterCreatorCAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
jump_number()
(in
UniformRigidBodyMover
)
just_smooth_cycles()
(in
ClassicAbinitio
)
JobOutputterFactory
(in
rosetta.protocols.jd2._protocols_jd2_
)
jump_pairs()
(in
FullModelInfo
)
just_smooth_cycles()
(in
FragmentSampler
)
JobOutputterFactoryAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
Jump_point
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
just_smooth_cycles()
(in
MembraneAbinitio
)
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