Module _protocols_stepwise_modeler_align_

Classes

[hide private]

SingletonBase_T_core_chemical_ChemicalManager_T
SingletonBase is meant to serve as a base class for singleton classes in Rosetta handling the initialization of the singleton in a thread-safe way.

SingletonBase_T_core_chemical_ChemicalManager_TAP

SingletonBase_T_core_chemical_ChemicalManager_TCAP

StepWiseClusterer
protocols/stepwise/modeler/align/StepWiseClusterer.hh:33

StepWiseClustererAP

StepWiseClustererCAP

StepWiseLegacyClusterer
////////////////////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////////////////////

StepWiseLegacyClustererAP

StepWiseLegacyClustererCAP

StepWiseLegacyClustererSilentBased
////////////////////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////////////////////

StepWiseLegacyClustererSilentBasedAP

StepWiseLegacyClustererSilentBasedCAP

StepWisePoseAligner
protocols/stepwise/modeler/align/StepWisePoseAligner.hh:35

StepWisePoseAlignerAP

StepWisePoseAlignerCAP

Functions

[hide private]

align_pose_and_add_rmsd_constraints(...)
align_pose_and_add_rmsd_constraints( (Pose)pose, (Pose)align_pose, (vector1_Size)moving_res_list, (float)rmsd_screen) -> None : protocols/stepwise/modeler/align/util.hh:47

create_aligment_id_map_legacy(...)
create_aligment_id_map_legacy( (Pose)mod_pose, (Pose)ref_pose, (map_Size_Size)res_map) -> AtomID_Map_T_core_id_AtomID_T : protocols/stepwise/modeler/align/util.hh:76

get_rmsd(...)
get_rmsd( (Pose)pose1, (Pose)pose2 [, (bool)check_align_at_superimpose_res=False [, (bool)check_switch=False]]) -> float : protocols/stepwise/modeler/align/util.hh:40

superimpose_pose_legacy(...)
superimpose_pose_legacy( (Pose)mod_pose, (Pose)ref_pose, (map_Size_Size)res_map) -> float : //////////////////////////////////////////////////////////////////////////////////////// //////////////////////////////////////////////////////////////////////////////////////// Superimpose mod_pose onto ref_pose using the mapping of residues from mod_pose to ref_pose given by res_map

superimpose_with_stepwise_aligner(...)
superimpose_with_stepwise_aligner( (Pose)pose, (Pose)align_pose [, (bool)superimpose_over_all_instantiated=False]) -> float : protocols/stepwise/modeler/align/util.hh:51

Variables

[hide private]

__package__ = None

Function Details

[hide private]

align_pose_and_add_rmsd_constraints(...)


align_pose_and_add_rmsd_constraints( (Pose)pose, (Pose)align_pose, (vector1_Size)moving_res_list, (float)rmsd_screen) -> None :
    protocols/stepwise/modeler/align/util.hh:47

    C++ signature :
        void align_pose_and_add_rmsd_constraints(core::pose::Pose {lvalue},boost::shared_ptr<core::pose::Pose const>,utility::vector1<unsigned long, std::allocator<unsigned long> >,double)

create_aligment_id_map_legacy(...)


create_aligment_id_map_legacy( (Pose)mod_pose, (Pose)ref_pose, (map_Size_Size)res_map) -> AtomID_Map_T_core_id_AtomID_T :
    protocols/stepwise/modeler/align/util.hh:76

    C++ signature :
        core::id::AtomID_Map<core::id::AtomID> create_aligment_id_map_legacy(core::pose::Pose,core::pose::Pose,std::map<unsigned long, unsigned long, std::less<unsigned long>, std::allocator<std::pair<unsigned long const, unsigned long> > >)

create_aligment_id_map_legacy( (Pose)mod_pose, (Pose)ref_pose, (vector1_Size)superimpose_res) -> AtomID_Map_T_core_id_AtomID_T :
    protocols/stepwise/modeler/align/util.hh:70

    C++ signature :
        core::id::AtomID_Map<core::id::AtomID> create_aligment_id_map_legacy(core::pose::Pose,core::pose::Pose,utility::vector1<unsigned long, std::allocator<unsigned long> >)

get_rmsd(...)


get_rmsd( (Pose)pose1, (Pose)pose2 [, (bool)check_align_at_superimpose_res=False [, (bool)check_switch=False]]) -> float :
    protocols/stepwise/modeler/align/util.hh:40

    C++ signature :
        double get_rmsd(core::pose::Pose,core::pose::Pose [,bool=False [,bool=False]])

get_rmsd( (Pose)pose1, (Pose)pose2, (vector1_Size)calc_rms_res [, (bool)check_align_at_superimpose_res=False [, (bool)check_switch=False]]) -> float :
    protocols/stepwise/modeler/align/util.hh:35

    C++ signature :
        double get_rmsd(core::pose::Pose,core::pose::Pose,utility::vector1<unsigned long, std::allocator<unsigned long> > [,bool=False [,bool=False]])

superimpose_pose_legacy(...)


superimpose_pose_legacy( (Pose)mod_pose, (Pose)ref_pose, (map_Size_Size)res_map) -> float :
    ////////////////////////////////////////////////////////////////////////////////////////
    ////////////////////////////////////////////////////////////////////////////////////////
     Superimpose mod_pose onto ref_pose using the mapping of residues from
     mod_pose to ref_pose given by res_map
    

    C++ signature :
        double superimpose_pose_legacy(core::pose::Pose {lvalue},core::pose::Pose,std::map<unsigned long, unsigned long, std::less<unsigned long>, std::allocator<std::pair<unsigned long const, unsigned long> > >)

superimpose_with_stepwise_aligner(...)


superimpose_with_stepwise_aligner( (Pose)pose, (Pose)align_pose [, (bool)superimpose_over_all_instantiated=False]) -> float :
    protocols/stepwise/modeler/align/util.hh:51

    C++ signature :
        double superimpose_with_stepwise_aligner(core::pose::Pose {lvalue},core::pose::Pose [,bool=False])