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align_virtual_atoms_in_carbohydrate_residue(...)
align_virtual_atoms_in_carbohydrate_residue( (Pose)pose, (int)sequence_position) -> None :
Set coordinates of virtual atoms (used as angle reference points) within a saccharide residue of the given
pose. |
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atom_next_to_connect_atom(...)
atom_next_to_connect_atom( (Residue)residue, (int)connect_atom_index) -> int :
Scan through the list of atoms connected to a given "connect_atom" and return the first heavy atom found. |
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find_seqpos_of_saccharides_parent_residue(...)
find_seqpos_of_saccharides_parent_residue( (Residue)residue) -> int :
Use a saccharide residue's connections to find the residue from which it follows or branches. |
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get_glycosidic_bond_residues(...)
get_glycosidic_bond_residues( (Pose)pose, (int)sequence_position) -> object :
Return pointers to the two residues of the glycosidic bond. |
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get_glycosidic_torsion(...)
get_glycosidic_torsion( (int)torsion_id, (Pose)pose, (int)sequence_position) -> float :
Return the requested torsion angle between a saccharide residue of the given pose and the previous residue. |
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get_reference_atoms(...)
get_reference_atoms( (int)torsion_id, (Pose)pose, (int)sequence_position) -> vector1_AtomID :
Return the AtomIDs of the four reference atoms for the requested torsion. |
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get_reference_atoms_for_1st_omega(...)
get_reference_atoms_for_1st_omega( (Pose)pose, (int)sequence_position) -> vector1_AtomID :
Return the AtomIDs of the four omega torsion reference atoms. |
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get_reference_atoms_for_phi(...)
get_reference_atoms_for_phi( (Pose)pose, (int)sequence_position) -> vector1_AtomID :
Return the AtomIDs of the four phi torsion reference atoms. |
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get_reference_atoms_for_psi(...)
get_reference_atoms_for_psi( (Pose)pose, (int)sequence_position) -> vector1_AtomID :
Return the AtomIDs of the four psi torsion reference atoms. |
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is_omega_torsion(...)
is_omega_torsion( (Pose)pose, (TorsionID)torsion_id) -> bool :
Is this is an omega torsion angle of a glycosidic linkage? |
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is_phi_torsion(...)
is_phi_torsion( (Pose)pose, (TorsionID)torsion_id) -> bool :
Is this is the phi torsion angle of a glycosidic linkage? |
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is_psi_torsion(...)
is_psi_torsion( (Pose)pose, (TorsionID)torsion_id) -> bool :
Is this is the psi torsion angle of a glycosidic linkage? |
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set_glycosidic_torsion(...)
set_glycosidic_torsion( (int)torsion_id, (Pose)pose, (int)sequence_position, (float)setting) -> None :
Set the requested torsion angle between a saccharide residue of the given pose and the previous residue. |
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