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ActiveSiteGrid protocols/match/downstream/ActiveSiteGrid.hh:40 |
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| ActiveSiteGridAP | |||
| ActiveSiteGridCAP | |||
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AtomAngleSecMatchRPE RPE to figure out if three atoms are within a given angle atoms need to be set through the parent class add_at_ind function |
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| AtomAngleSecMatchRPEAP | |||
| AtomAngleSecMatchRPECAP | |||
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AtomDihedralSecMatchRPE RPE to figure out if four atoms are within a given dihedral angle atoms need to be set through the parent class add_at_ind function also checks whether a dihedral is periodic, i.e. |
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| AtomDihedralSecMatchRPEAP | |||
| AtomDihedralSecMatchRPECAP | |||
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AtomDistanceSecMatchRPE RPE to figure out if two atoms are within a given distance atoms need to be set through the parent class add_at_ind function |
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| AtomDistanceSecMatchRPEAP | |||
| AtomDistanceSecMatchRPECAP | |||
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AtomGeometrySecMatchRPE helper class for GeometrySec abstract base class for distance, angle, and dihedral derived classes |
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| AtomGeometrySecMatchRPEAP | |||
| AtomGeometrySecMatchRPECAP | |||
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ClassicMatchAlgorithm Produce hits by hashing building the coordinates of the downstream partner The downstream partner is responsible for building itself from the coordinate frame of three of its atoms. |
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| ClassicMatchAlgorithmAP | |||
| ClassicMatchAlgorithmCAP | |||
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DownstreamAlgorithm A class for an algorithm. |
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| DownstreamAlgorithmAP | |||
| DownstreamAlgorithmCAP | |||
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DownstreamBuilder protocols/match/downstream/DownstreamBuilder.hh:54 |
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| DownstreamBuilderAP | |||
| DownstreamBuilderCAP | |||
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GeometrySecMatchRPE holds a list of AtomGeometrySecMatchRPEs, that get evaluated in sequence when an instance of this class is asked to evaluate two residues. |
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| GeometrySecMatchRPEAP | |||
| GeometrySecMatchRPECAP | |||
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LigandConformerBuilder protocols/match/downstream/LigandConformerBuilder.hh:53 |
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| LigandConformerBuilderAP | |||
| LigandConformerBuilderCAP | |||
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RigidLigandBuilder protocols/match/downstream/RigidLigandBuilder.hh:52 |
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| RigidLigandBuilderAP | |||
| RigidLigandBuilderCAP | |||
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ScoringSecMatchRPE protocols/match/downstream/ScoringSecMatchRPE.hh:43 |
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| ScoringSecMatchRPEAP | |||
| ScoringSecMatchRPECAP | |||
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SecMatchEvaluatorFactory a collection of functions making a single score_function |
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| SecMatchEvaluatorFactoryAP | |||
| SecMatchEvaluatorFactoryCAP | |||
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SecMatchResiduePairEvaluator base for class used by secondary matcher to determine whether a given residue to be matched interacts satisfactorily with a target residue |
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| SecMatchResiduePairEvaluatorAP | |||
| SecMatchResiduePairEvaluatorCAP | |||
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SecondaryMatchUpstreamResProcessor A simple class to respond to the UpstreamBuilder's process_hit method and pass on the coordinates to its "owning" SecondaryMatcherToUpstreamResidue object. |
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| SecondaryMatchUpstreamResProcessorAP | |||
| SecondaryMatchUpstreamResProcessorCAP | |||
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SecondaryMatcherToDownstreamResidue A class for an algorithm. |
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| SecondaryMatcherToDownstreamResidueAP | |||
| SecondaryMatcherToDownstreamResidueCAP | |||
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SecondaryMatcherToUpstreamResidue A class for an algorithm. |
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| SecondaryMatcherToUpstreamResidueAP | |||
| SecondaryMatcherToUpstreamResidueCAP | |||
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SingletonBase_T_core_chemical_ChemicalManager_T SingletonBase is meant to serve as a base class for singleton classes in Rosetta handling the initialization of the singleton in a thread-safe way. |
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| SingletonBase_T_core_chemical_ChemicalManager_TAP | |||
| SingletonBase_T_core_chemical_ChemicalManager_TCAP | |||
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TargetRotamerCoords protocols/match/downstream/SecondaryMatcherToUpstreamResidue.hh:251 |
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| TargetRotamerCoordsAP | |||
| TargetRotamerCoordsCAP | |||
| __CPP_AtomAngleSecMatchRPE__ | |||
| __CPP_AtomDihedralSecMatchRPE__ | |||
| __CPP_AtomDistanceSecMatchRPE__ | |||
| __CPP_AtomGeometrySecMatchRPE__ | |||
| __CPP_ClassicMatchAlgorithm__ | |||
| __CPP_DownstreamAlgorithm__ | |||
| __CPP_DownstreamBuilder__ | |||
| __CPP_GeometrySecMatchRPE__ | |||
| __CPP_LigandConformerBuilder__ | |||
| __CPP_RigidLigandBuilder__ | |||
| __CPP_ScoringSecMatchRPE__ | |||
| __CPP_SecMatchResiduePairEvaluator__ | |||
| __CPP_SecondaryMatchUpstreamResProcessor__ | |||
| __CPP_SecondaryMatcherToDownstreamResidue__ | |||
| __CPP_SecondaryMatcherToUpstreamResidue__ | |||
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us_secmatch_hit_compare A simple struct to use in list.sort() to ensure that the hits returned by a secondary matcher which has possibly generated upstream hits out-of-order, will return an ordered-hit-list in its build_hits_at_all_positions() method. |
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| us_secmatch_hit_compareAP | |||
| us_secmatch_hit_compareCAP | |||
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__package__ = None
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