Module _protocols_jumping_

assign_ss_dssp( (Pose)pose) -> None :
    Assign secondary structure using DSSP.
    

    C++ signature :
        void assign_ss_dssp(core::pose::Pose {lvalue})

close_chainbreaks( (__CPP_SlidingWindowLoopClosure__)closure_protocol, (Pose)pose, (object)checkpoint, (str)decoy_tag [, (FoldTree)final_fold_tree=<rosetta.core.kinematics._core_kinematics_.FoldTree object at 0x128adb6e0>]) -> None :
    protocols/jumping/util.hh:56

    C++ signature :
        void close_chainbreaks(boost::shared_ptr<protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure>,core::pose::Pose {lvalue},protocols::checkpoint::CheckPointer {lvalue},std::string [,core::kinematics::FoldTree=<rosetta.core.kinematics._core_kinematics_.FoldTree object at 0x128adb6e0>])

generate_empty_jump_frame( (int)startpos, (int)endpos, (int)length) -> JumpingFrame :
    protocols/jumping/util.hh:86

    C++ signature :
        boost::shared_ptr<core::fragment::JumpingFrame> generate_empty_jump_frame(unsigned long,unsigned long,unsigned long)

generate_jump_frame( (int)startpos, (int)endpos, (bool)bWithTorsion) -> JumpingFrame :
    protocols/jumping/util.hh:93

    C++ signature :
        boost::shared_ptr<core::fragment::JumpingFrame> generate_jump_frame(unsigned long,unsigned long,bool)

get_pairing_geometry( (Pose)pose, (int)res1, (int)res2, (float)orientation, (float)pleating1, (float)pleating2) -> None :
    protocols/jumping/util.hh:78

    C++ signature :
        void get_pairing_geometry(core::pose::Pose,unsigned long,unsigned long,double {lvalue},double {lvalue},double {lvalue})

get_pleating( (Pose)pose, (int)pos1, (int)pos2, (int)orientation, (int)pleating) -> None :
    protocols/jumping/util.hh:68

    C++ signature :
        void get_pleating(core::pose::Pose,unsigned long,unsigned long,unsigned long {lvalue},unsigned long {lvalue})

read_disulf_pairing_list( (std_istream)is, (object)disulf_pairings) -> None :
    protocols/jumping/DisulfPairingsList.hh:99

    C++ signature :
        void read_disulf_pairing_list(std::istream {lvalue},utility::vector1<protocols::jumping::DisulfPairing, std::allocator<protocols::jumping::DisulfPairing> > {lvalue})

remove_cut( (int)cutpoint, (FoldTree)fold_tree [, (FoldTree)final_fold_tree=<rosetta.core.kinematics._core_kinematics_.FoldTree object at 0x128adb8c0>]) -> bool :
    protocols/jumping/util.hh:47

    C++ signature :
        bool remove_cut(unsigned long,core::kinematics::FoldTree {lvalue} [,core::kinematics::FoldTree=<rosetta.core.kinematics._core_kinematics_.FoldTree object at 0x128adb8c0>])

remove_cut( (int)cutpoint, (Pose)pose [, (FoldTree)final_fold_tree=<rosetta.core.kinematics._core_kinematics_.FoldTree object at 0x128adb938>]) -> bool :
    protocols/jumping/util.hh:41

    C++ signature :
        bool remove_cut(unsigned long,core::pose::Pose {lvalue} [,core::kinematics::FoldTree=<rosetta.core.kinematics._core_kinematics_.FoldTree object at 0x128adb938>])

safe_secstruct( (Pose)pose) -> None :
    protocols/jumping/util.hh:58

    C++ signature :
        void safe_secstruct(core::pose::Pose {lvalue})

angleA

Value:

rosetta.protocols.jumping._protocols_jumping_.cstType.angleA

angleB

Value:

rosetta.protocols.jumping._protocols_jumping_.cstType.angleB

cstJump

Value:

rosetta.protocols.jumping._protocols_jumping_.dofType.cstJump

dihedralA

Value:

rosetta.protocols.jumping._protocols_jumping_.cstType.dihedralA

dihedralAB

Value:

rosetta.protocols.jumping._protocols_jumping_.cstType.dihedralAB

dihedralB

Value:

rosetta.protocols.jumping._protocols_jumping_.cstType.dihedralB

disAB

Value:

rosetta.protocols.jumping._protocols_jumping_.cstType.disAB

num_cstType

Value:

rosetta.protocols.jumping._protocols_jumping_.cstType.num_cstType

num_dofType

Value:

rosetta.protocols.jumping._protocols_jumping_.dofType.num_dofType