Module _protocols_protein_interface_design_

best_bbcst_residues( (Pose)pose, (int)chain, (int)n_return) -> vector1_Size :
    evaluate backbone_stub_constraints for each residue in a chain and return a vector with the top n_return residue numbers by cst score
    note that this function is NOT guaranteed to return n_return residues! It will return the best n<=n_return
    

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > best_bbcst_residues(core::pose::Pose,unsigned long,unsigned long)

best_cutpoint( (Pose)pose, (int)prev_u, (int)prev_d, (int)u, (int)d) -> int :
    utility function for stub_based_atom_tree. tries to find an optimal cutpoint in a pose given two different boundaries.
    

    C++ signature :
        unsigned long best_cutpoint(core::pose::Pose {lvalue},unsigned long,unsigned long,unsigned long,unsigned long)

find_lowest_constraint_energy_residue( (Pose)pose, (int)chain, (int)resi, (float)lowest_energy) -> None :
    protocols/protein_interface_design/util.hh:51

    C++ signature :
        void find_lowest_constraint_energy_residue(core::pose::Pose,unsigned long,unsigned long {lvalue},double {lvalue})

find_nearest_residue( (Pose)pose, (int)target_chain, (int)res [, (str)atom='CA']) -> int :
    find nearest residue on target_chain to res
    

    C++ signature :
        unsigned long find_nearest_residue(core::pose::Pose,unsigned long,unsigned long [,std::string='CA'])

get_bbcsts( (Pose)pose) -> object :
    protocols/protein_interface_design/util.hh:44

    C++ signature :
        utility::vector1<boost::shared_ptr<core::scoring::constraints::Constraint const>, std::allocator<boost::shared_ptr<core::scoring::constraints::Constraint const> > > get_bbcsts(core::pose::Pose)

make_hotspot_foldtree( (Pose)pose) -> FoldTree :
    protocols/protein_interface_design/util.hh:65

    C++ signature :
        core::kinematics::FoldTree make_hotspot_foldtree(core::pose::Pose)

optimal_connection_point( (str)residue_type) -> str :
    what is the optimal connection point for an atom tree, given a residue type (puts the connection point
    at the beginning of a functional group
    

    C++ signature :
        std::string optimal_connection_point(std::string)

remove_coordinate_constraints_from_pose( (Pose)pose) -> object :
    removes ALL coordinate constraints from a pose. returns the constraints that were removed
    

    C++ signature :
        utility::vector1<boost::shared_ptr<core::scoring::constraints::Constraint const>, std::allocator<boost::shared_ptr<core::scoring::constraints::Constraint const> > > remove_coordinate_constraints_from_pose(core::pose::Pose {lvalue})

star_fold_tree( (Pose)pose) -> FoldTree :
    protocols/protein_interface_design/util.hh:38

    C++ signature :
        core::kinematics::FoldTree star_fold_tree(core::pose::Pose {lvalue})

sum_total_residue_energy( (Pose)pose, (int)resid) -> float :
    protocols/protein_interface_design/design_utils.hh:35

    C++ signature :
        double sum_total_residue_energy(core::pose::Pose,unsigned long)