(c) Copyright Rosetta Commons Member Institutions. (c) This file is
part of the Rosetta software suite and is made available under (c)
license. (c) The Rosetta software is developed by the contributing
members of the (c) Rosetta Commons. (c) For more information, see
http://www.rosettacommons.org. (c) Questions about this can be addressed
to University of Washington UW (c) TechTransfer, email:
license@u.washington.edu.
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ACETYLAMINO_SUGAR = rosetta.core.chemical._core_chemical_.Resi...
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ACETYLATED_NTERMINUS = rosetta.core.chemical._core_chemical_.R...
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ACETYLATED_NTERMINUS_VARIANT = rosetta.core.chemical._core_che...
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ACETYLATION = rosetta.core.chemical._core_chemical_.VariantTyp...
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ACETYL_SUGAR = rosetta.core.chemical._core_chemical_.ResiduePr...
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ADDUCT = rosetta.core.chemical._core_chemical_.ResidueProperty...
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ADDUCT_VARIANT = rosetta.core.chemical._core_chemical_.Variant...
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ALDONIC_ACID = rosetta.core.chemical._core_chemical_.ResiduePr...
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ALDONIC_ACID_VARIANT = rosetta.core.chemical._core_chemical_.V...
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ALDOSE = rosetta.core.chemical._core_chemical_.ResidueProperty...
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ALL_STAGES = rosetta.protocols.abinitio._protocols_abinitio_.S...
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ALPHA_AA = rosetta.core.chemical._core_chemical_.ResidueProper...
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ALPHA_SUGAR = rosetta.core.chemical._core_chemical_.ResiduePro...
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ALREADY_SYMMETRIZED = rosetta.core.pack.task._core_pack_task_....
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ALTERNATIVE_PROTONATION = rosetta.core.chemical._core_chemical...
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AMINO_SUGAR = rosetta.core.chemical._core_chemical_.ResiduePro...
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AROMATIC = rosetta.core.chemical._core_chemical_.ResidueProper...
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AUTOMATIC = rosetta.core.conformation._core_conformation_.Stra...
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AromaticBond = rosetta.core.chemical._core_chemical_.BondName....
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BB = rosetta.core.id._core_id_.TorsionType.BB
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BETA_AA = rosetta.core.chemical._core_chemical_.ResiduePropert...
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BETA_SUGAR = rosetta.core.chemical._core_chemical_.ResidueProp...
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BRANCH_LOWER_TERMINUS = rosetta.core.chemical._core_chemical_....
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BRANCH_LOWER_TERMINUS_VARIANT = rosetta.core.chemical._core_ch...
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BRANCH_POINT = rosetta.core.chemical._core_chemical_.ResiduePr...
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BULGE = rosetta.core.chemical._core_chemical_.VariantType.BULGE
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BondInRing = rosetta.core.chemical._core_chemical_.BondRingnes...
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BondNotInRing = rosetta.core.chemical._core_chemical_.BondRing...
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C1_ACETYLAMINO_SUGAR = rosetta.core.chemical._core_chemical_.V...
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C1_AMINO_SUGAR = rosetta.core.chemical._core_chemical_.Variant...
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C1_BRANCH_POINT = rosetta.core.chemical._core_chemical_.Varian...
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C1_DEOXY_SUGAR = rosetta.core.chemical._core_chemical_.Variant...
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C1_MODIFIED = rosetta.core.chemical._core_chemical_.ResiduePro...
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C1_PHOSPHATE = rosetta.core.chemical._core_chemical_.VariantTy...
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C2_ACETYLAMINO_SUGAR = rosetta.core.chemical._core_chemical_.V...
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C2_AMINO_SUGAR = rosetta.core.chemical._core_chemical_.Variant...
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C2_BRANCH_POINT = rosetta.core.chemical._core_chemical_.Varian...
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C2_DEOXY_SUGAR = rosetta.core.chemical._core_chemical_.Variant...
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C2_KETOALDONIC_ACID = rosetta.core.chemical._core_chemical_.Va...
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C2_MODIFIED = rosetta.core.chemical._core_chemical_.ResiduePro...
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C2_PHOSPHATE = rosetta.core.chemical._core_chemical_.VariantTy...
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C3_ACETYLAMINO_SUGAR = rosetta.core.chemical._core_chemical_.V...
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C3_AMINO_SUGAR = rosetta.core.chemical._core_chemical_.Variant...
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C3_BRANCH_POINT = rosetta.core.chemical._core_chemical_.Varian...
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C3_DEOXY_SUGAR = rosetta.core.chemical._core_chemical_.Variant...
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C3_KETOALDONIC_ACID = rosetta.core.chemical._core_chemical_.Va...
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C3_MODIFIED = rosetta.core.chemical._core_chemical_.ResiduePro...
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C3_PHOSPHATE = rosetta.core.chemical._core_chemical_.VariantTy...
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C4_ACETYLAMINO_SUGAR = rosetta.core.chemical._core_chemical_.V...
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C4_AMINO_SUGAR = rosetta.core.chemical._core_chemical_.Variant...
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C4_BRANCH_POINT = rosetta.core.chemical._core_chemical_.Varian...
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C4_DEOXY_SUGAR = rosetta.core.chemical._core_chemical_.Variant...
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C4_KETOALDONIC_ACID = rosetta.core.chemical._core_chemical_.Va...
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C4_MODIFIED = rosetta.core.chemical._core_chemical_.ResiduePro...
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C4_PHOSPHATE = rosetta.core.chemical._core_chemical_.VariantTy...
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C5_ACETYLAMINO_SUGAR = rosetta.core.chemical._core_chemical_.V...
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C5_AMINO_SUGAR = rosetta.core.chemical._core_chemical_.Variant...
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C5_BRANCH_POINT = rosetta.core.chemical._core_chemical_.Varian...
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C5_DEOXY_SUGAR = rosetta.core.chemical._core_chemical_.Variant...
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C5_KETOALDONIC_ACID = rosetta.core.chemical._core_chemical_.Va...
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C5_MODIFIED = rosetta.core.chemical._core_chemical_.ResiduePro...
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C5_PHOSPHATE = rosetta.core.chemical._core_chemical_.VariantTy...
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C6_ACETYLAMINO_SUGAR = rosetta.core.chemical._core_chemical_.V...
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C6_AMINO_SUGAR = rosetta.core.chemical._core_chemical_.Variant...
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C6_BRANCH_POINT = rosetta.core.chemical._core_chemical_.Varian...
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C6_DEOXY_SUGAR = rosetta.core.chemical._core_chemical_.Variant...
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C6_KETOALDONIC_ACID = rosetta.core.chemical._core_chemical_.Va...
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C6_MODIFIED = rosetta.core.chemical._core_chemical_.ResiduePro...
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C6_PHOSPHATE = rosetta.core.chemical._core_chemical_.VariantTy...
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C7_ACETYLAMINO_SUGAR = rosetta.core.chemical._core_chemical_.V...
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C7_AMINO_SUGAR = rosetta.core.chemical._core_chemical_.Variant...
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C7_BRANCH_POINT = rosetta.core.chemical._core_chemical_.Varian...
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C7_DEOXY_SUGAR = rosetta.core.chemical._core_chemical_.Variant...
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C7_KETOALDONIC_ACID = rosetta.core.chemical._core_chemical_.Va...
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C7_MODIFIED = rosetta.core.chemical._core_chemical_.ResiduePro...
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C7_PHOSPHATE = rosetta.core.chemical._core_chemical_.VariantTy...
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C8_ACETYLAMINO_SUGAR = rosetta.core.chemical._core_chemical_.V...
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C8_AMINO_SUGAR = rosetta.core.chemical._core_chemical_.Variant...
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C8_BRANCH_POINT = rosetta.core.chemical._core_chemical_.Varian...
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C8_DEOXY_SUGAR = rosetta.core.chemical._core_chemical_.Variant...
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C8_KETOALDONIC_ACID = rosetta.core.chemical._core_chemical_.Va...
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C8_MODIFIED = rosetta.core.chemical._core_chemical_.ResiduePro...
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C8_PHOSPHATE = rosetta.core.chemical._core_chemical_.VariantTy...
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C9_ACETYLAMINO_SUGAR = rosetta.core.chemical._core_chemical_.V...
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C9_AMINO_SUGAR = rosetta.core.chemical._core_chemical_.Variant...
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C9_BRANCH_POINT = rosetta.core.chemical._core_chemical_.Varian...
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C9_DEOXY_SUGAR = rosetta.core.chemical._core_chemical_.Variant...
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C9_MODIFIED = rosetta.core.chemical._core_chemical_.ResiduePro...
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C9_PHOSPHATE = rosetta.core.chemical._core_chemical_.VariantTy...
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CARBOHYDRATE = rosetta.core.chemical._core_chemical_.ResiduePr...
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CARBOXYLATION = rosetta.core.chemical._core_chemical_.VariantT...
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CENTROID_HA = rosetta.core.chemical._core_chemical_.VariantTyp...
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CHARGED = rosetta.core.chemical._core_chemical_.ResiduePropert...
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CHI = rosetta.core.id._core_id_.TorsionType.CHI
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CHI1 = rosetta.core.scoring._core_scoring_.ProteinTorsion.CHI1
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CHI2 = rosetta.core.scoring._core_scoring_.ProteinTorsion.CHI2
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CHI3 = rosetta.core.scoring._core_scoring_.ProteinTorsion.CHI3
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CHI4 = rosetta.core.scoring._core_scoring_.ProteinTorsion.CHI4
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CIS_XP = rosetta.core.scoring._core_scoring_.Rama2BOffsetTable...
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CIS_XX = rosetta.core.scoring._core_scoring_.Rama2BOffsetTable...
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COARSE = rosetta.core.chemical._core_chemical_.ResidueProperty...
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CTERM_CONNECT = rosetta.core.chemical._core_chemical_.VariantT...
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CUTPOINT_LOWER = rosetta.core.chemical._core_chemical_.Variant...
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CUTPOINT_UPPER = rosetta.core.chemical._core_chemical_.Variant...
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CYCLIC = rosetta.core.chemical._core_chemical_.ResidueProperty...
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C_METHYLAMIDATION = rosetta.core.chemical._core_chemical_.Vari...
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ConjugableBond = rosetta.core.chemical._core_chemical_.BondCon...
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D = rosetta.core.id._core_id_.DOF_Type.D
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DCV_ALREADY_CYCLIZED = rosetta.protocols.simple_moves._protoco...
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DCV_CYCLIZABLE = rosetta.protocols.simple_moves._protocols_sim...
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DCV_NOT_CYCLIZABLE = rosetta.protocols.simple_moves._protocols...
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DEOXY_SUGAR = rosetta.core.chemical._core_chemical_.ResiduePro...
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DEPROTONATED = rosetta.core.chemical._core_chemical_.VariantTy...
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DFIRE = rosetta.core.scoring._core_scoring_.ScoreType.DFIRE
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DIIODINATION = rosetta.core.chemical._core_chemical_.VariantTy...
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DIMETHYLATION = rosetta.core.chemical._core_chemical_.VariantT...
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DISULFIDE = rosetta.core.chemical._core_chemical_.VariantType....
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DISULFIDE_BONDED = rosetta.core.chemical._core_chemical_.Resid...
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DNA = rosetta.core.chemical._core_chemical_.ResidueProperty.DNA
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D_AA = rosetta.core.chemical._core_chemical_.ResidueProperty.D_AA
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D_SUGAR = rosetta.core.chemical._core_chemical_.ResiduePropert...
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DoubleBond = rosetta.core.chemical._core_chemical_.BondName.Do...
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DoubleBondOrder = rosetta.core.chemical._core_chemical_.BondOr...
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EIsometry = rosetta.core.chemical._core_chemical_.BondIsometry...
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END_ABINITIO = rosetta.protocols.abinitio._protocols_abinitio_...
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EX_FOUR_HALF_STEP_STDDEVS = rosetta.core.pack.task._core_pack_...
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EX_ONE_HALF_STEP_STDDEV = rosetta.core.pack.task._core_pack_ta...
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EX_ONE_STDDEV = rosetta.core.pack.task._core_pack_task_.ExtraR...
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EX_SIX_QUARTER_STEP_STDDEVS = rosetta.core.pack.task._core_pac...
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EX_THREE_THIRD_STEP_STDDEVS = rosetta.core.pack.task._core_pac...
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EX_TWO_FULL_STEP_STDDEVS = rosetta.core.pack.task._core_pack_t...
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EX_TWO_HALF_STEP_STDDEVS = rosetta.core.pack.task._core_pack_t...
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ExtraRotSampleCardinality = rosetta.core.pack.task._core_pack_...
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FAIL_BAD_INPUT = rosetta.protocols.moves._protocols_moves_.Mov...
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FAIL_DO_NOT_RETRY = rosetta.protocols.moves._protocols_moves_....
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FAIL_RETRY = rosetta.protocols.moves._protocols_moves_.MoverSt...
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FIRST_PROPERTY = rosetta.core.chemical._core_chemical_.Residue...
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FIRST_VARIANT = rosetta.core.chemical._core_chemical_.VariantT...
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FIVE_PRIME_END_OH = rosetta.core.chemical._core_chemical_.Vari...
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FIVE_PRIME_END_PHOSPHATE = rosetta.core.chemical._core_chemica...
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FIVE_PRIME_PACKABLE_PHOSPHATE = rosetta.core.chemical._core_ch...
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FIVE_PRIME_PHOSPHATE = rosetta.core.chemical._core_chemical_.V...
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FORMS_DISULFIDE_BOND = rosetta.core.chemical._core_chemical_.R...
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FURANOSE = rosetta.core.chemical._core_chemical_.ResidueProper...
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FaMPEnv = rosetta.core.scoring._core_scoring_.ScoreType.FaMPEnv
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FaMPEnvSmooth = rosetta.core.scoring._core_scoring_.ScoreType....
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FaMPSolv = rosetta.core.scoring._core_scoring_.ScoreType.FaMPSolv
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GAMMA_AA = rosetta.core.chemical._core_chemical_.ResidueProper...
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GLYCOSIDE = rosetta.core.chemical._core_chemical_.ResiduePrope...
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HBS_POST = rosetta.core.chemical._core_chemical_.VariantType.H...
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HBS_PRE = rosetta.core.chemical._core_chemical_.VariantType.HB...
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HYBRID_MAX = rosetta.core.chemical._core_chemical_.Hybridizati...
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HYDROXYLATION = rosetta.core.chemical._core_chemical_.VariantT...
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HYDROXYLATION1 = rosetta.core.chemical._core_chemical_.Variant...
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HYDROXYLATION2 = rosetta.core.chemical._core_chemical_.Variant...
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Hpol_bond_geometry = rosetta.core.scoring._core_scoring_.Score...
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IsAromaticBond = rosetta.core.chemical._core_chemical_.BondAro...
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JUMP = rosetta.core.id._core_id_.TorsionType.JUMP
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KETOSE = rosetta.core.chemical._core_chemical_.ResidueProperty...
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LAST_STAGE = rosetta.protocols.abinitio._protocols_abinitio_.S...
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LIGAND = rosetta.core.chemical._core_chemical_.ResidueProperty...
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LIPID = rosetta.core.chemical._core_chemical_.ResidueProperty....
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LOOP_CLOSURE = rosetta.protocols.abinitio._protocols_abinitio_...
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LOWERTERM_TRUNC = rosetta.core.chemical._core_chemical_.Residu...
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LOWERTERM_TRUNC_VARIANT = rosetta.core.chemical._core_chemical...
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LOWER_TERMINUS = rosetta.core.chemical._core_chemical_.Residue...
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LOWER_TERMINUS_VARIANT = rosetta.core.chemical._core_chemical_...
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L_AA = rosetta.core.chemical._core_chemical_.ResidueProperty.L_AA
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L_SUGAR = rosetta.core.chemical._core_chemical_.ResiduePropert...
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MCA_accepted_score_beat_last = rosetta.protocols.moves._protoc...
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MCA_accepted_score_beat_low = rosetta.protocols.moves._protoco...
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MCA_accepted_thermally = rosetta.protocols.moves._protocols_mo...
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MCA_rejected = rosetta.protocols.moves._protocols_moves_.MCA.M...
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MEMBRANE = rosetta.core.chemical._core_chemical_.ResidueProper...
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METAL = rosetta.core.chemical._core_chemical_.ResidueProperty....
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METALBINDING = rosetta.core.chemical._core_chemical_.ResiduePr...
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METHYLATED_CTERMINUS = rosetta.core.chemical._core_chemical_.R...
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METHYLATED_CTERMINUS_VARIANT = rosetta.core.chemical._core_che...
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METHYLATED_NTERM_VARIANT = rosetta.core.chemical._core_chemica...
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METHYLATION = rosetta.core.chemical._core_chemical_.VariantTyp...
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METHYL_GLYCOSIDE = rosetta.core.chemical._core_chemical_.Varia...
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MPCbeta = rosetta.core.scoring._core_scoring_.ScoreType.MPCbeta
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MPEnv = rosetta.core.scoring._core_scoring_.ScoreType.MPEnv
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MPLipo = rosetta.core.scoring._core_scoring_.ScoreType.MPLipo
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MPNonHelix = rosetta.core.scoring._core_scoring_.ScoreType.MPN...
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MPPair = rosetta.core.scoring._core_scoring_.ScoreType.MPPair
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MPTMProj = rosetta.core.scoring._core_scoring_.ScoreType.MPTMProj
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MPTermini = rosetta.core.scoring._core_scoring_.ScoreType.MPTe...
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MS_SUCCESS = rosetta.protocols.moves._protocols_moves_.MoverSt...
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Mcbeta = rosetta.core.scoring._core_scoring_.ScoreType.Mcbeta
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Menv = rosetta.core.scoring._core_scoring_.ScoreType.Menv
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Menv_non_helix = rosetta.core.scoring._core_scoring_.ScoreType...
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Menv_smooth = rosetta.core.scoring._core_scoring_.ScoreType.Me...
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Menv_termini = rosetta.core.scoring._core_scoring_.ScoreType.M...
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Menv_tm_proj = rosetta.core.scoring._core_scoring_.ScoreType.M...
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Mlipo = rosetta.core.scoring._core_scoring_.ScoreType.Mlipo
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Mpair = rosetta.core.scoring._core_scoring_.ScoreType.Mpair
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NAIVE = rosetta.core.conformation._core_conformation_.Strategy...
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NE2_CONNECT = rosetta.core.chemical._core_chemical_.VariantTyp...
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NO_EXTRA_CHI_SAMPLES = rosetta.core.pack.task._core_pack_task_...
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NO_SYMMETRIZATION_REQUEST = rosetta.core.pack.task._core_pack_...
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NRAMATABLES = rosetta.core.scoring._core_scoring_.Rama2BOffset...
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NTERM_CONNECT = rosetta.core.chemical._core_chemical_.VariantT...
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NU = rosetta.core.id._core_id_.TorsionType.NU
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N_ACETYLATION = rosetta.core.chemical._core_chemical_.VariantT...
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N_PROPERTIES = rosetta.core.chemical._core_chemical_.ResiduePr...
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N_VARIANTS = rosetta.core.chemical._core_chemical_.VariantType...
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NoBondIsometry = rosetta.core.chemical._core_chemical_.BondIso...
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NonaromaticBond = rosetta.core.chemical._core_chemical_.BondAr...
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NotConjugableBond = rosetta.core.chemical._core_chemical_.Bond...
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OCTREE = rosetta.core.conformation._core_conformation_.Strateg...
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OMEGA = rosetta.core.scoring._core_scoring_.ProteinTorsion.OMEGA
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OOP_POST = rosetta.core.chemical._core_chemical_.VariantType.O...
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OOP_PRE = rosetta.core.chemical._core_chemical_.VariantType.OO...
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OXETOSE = rosetta.core.chemical._core_chemical_.ResiduePropert...
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OXIROSE = rosetta.core.chemical._core_chemical_.ResiduePropert...
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OrbitalBond = rosetta.core.chemical._core_chemical_.BondName.O...
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OrbitalBondOrder = rosetta.core.chemical._core_chemical_.BondO...
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PB_elec = rosetta.core.scoring._core_scoring_.ScoreType.PB_elec
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PEPTOID = rosetta.core.chemical._core_chemical_.ResiduePropert...
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PHI = rosetta.core.scoring._core_scoring_.ProteinTorsion.PHI
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PHOSPHATE = rosetta.core.chemical._core_chemical_.ResiduePrope...
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PHOSPHONATE = rosetta.core.chemical._core_chemical_.ResiduePro...
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PHOSPHONATE_UPPER = rosetta.core.chemical._core_chemical_.Resi...
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PHOSPHONATE_UPPER_VARIANT = rosetta.core.chemical._core_chemic...
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PHOSPHORYLATION = rosetta.core.chemical._core_chemical_.Varian...
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POLYMER = rosetta.core.chemical._core_chemical_.ResiduePropert...
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PROTEIN = rosetta.core.chemical._core_chemical_.ResiduePropert...
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PROTONATED = rosetta.core.chemical._core_chemical_.VariantType...
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PROTONATED_H1_ADENOSINE = rosetta.core.chemical._core_chemical...
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PSI = rosetta.core.scoring._core_scoring_.ProteinTorsion.PSI
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|
PYRANOSE = rosetta.core.chemical._core_chemical_.ResidueProper...
|
|
|
ProQ = rosetta.core.scoring._core_scoring_.ScoreType.ProQ
|
|
|
ProQM = rosetta.core.scoring._core_scoring_.ScoreType.ProQM
|
|
|
PseudoBondOrder = rosetta.core.chemical._core_chemical_.BondOr...
|
|
|
PyRosettaEnergy_first = rosetta.core.scoring._core_scoring_.Sc...
|
|
|
PyRosettaEnergy_last = rosetta.core.scoring._core_scoring_.Sco...
|
|
|
PyRosettaTwoBodyContextDependentEnergy_first = rosetta.core.sc...
|
|
|
PyRosettaTwoBodyContextDependentEnergy_last = rosetta.core.sco...
|
|
|
PyRosettaTwoBodyContextIndepenedentEnergy_first = rosetta.core...
|
|
|
PyRosettaTwoBodyContextIndepenedentEnergy_last = rosetta.core....
|
|
|
RB1 = rosetta.core.id._core_id_.DOF_Type.RB1
|
|
|
RB2 = rosetta.core.id._core_id_.DOF_Type.RB2
|
|
|
RB3 = rosetta.core.id._core_id_.DOF_Type.RB3
|
|
|
RB4 = rosetta.core.id._core_id_.DOF_Type.RB4
|
|
|
RB5 = rosetta.core.id._core_id_.DOF_Type.RB5
|
|
|
RB6 = rosetta.core.id._core_id_.DOF_Type.RB6
|
|
|
RELAX = rosetta.protocols.abinitio._protocols_abinitio_.StageI...
|
|
|
REPLONLY = rosetta.core.chemical._core_chemical_.VariantType.R...
|
|
|
REQUEST_SYMMETRIZE_BY_INTERSECTION = rosetta.core.pack.task._c...
|
|
|
REQUEST_SYMMETRIZE_BY_UNION = rosetta.core.pack.task._core_pac...
|
|
|
RING_HYBRID = rosetta.core.chemical._core_chemical_.Hybridizat...
|
|
|
RNA = rosetta.core.chemical._core_chemical_.ResidueProperty.RNA
|
|
|
SC_BRANCH_POINT = rosetta.core.chemical._core_chemical_.Varian...
|
|
|
SC_FRAGMENT = rosetta.core.chemical._core_chemical_.VariantTyp...
|
|
|
SC_ORBITALS = rosetta.core.chemical._core_chemical_.ResiduePro...
|
|
|
SEPTANOSE = rosetta.core.chemical._core_chemical_.ResiduePrope...
|
|
|
SG_CONNECT = rosetta.core.chemical._core_chemical_.VariantType...
|
|
|
SHOVE_BB = rosetta.core.chemical._core_chemical_.VariantType.S...
|
|
|
SIALIC_ACID = rosetta.core.chemical._core_chemical_.ResiduePro...
|
|
|
SIDECHAIN_CONJUGATION = rosetta.core.chemical._core_chemical_....
|
|
|
SP2_HYBRID = rosetta.core.chemical._core_chemical_.Hybridizati...
|
|
|
SP3_HYBRID = rosetta.core.chemical._core_chemical_.Hybridizati...
|
|
|
SPECIAL_ROT = rosetta.core.chemical._core_chemical_.VariantTyp...
|
|
|
SRI = rosetta.core.chemical._core_chemical_.ResidueProperty.SRI
|
|
|
STAGE_1 = rosetta.protocols.abinitio._protocols_abinitio_.Stag...
|
|
|
STAGE_2 = rosetta.protocols.abinitio._protocols_abinitio_.Stag...
|
|
|
STAGE_3 = rosetta.protocols.abinitio._protocols_abinitio_.Stag...
|
|
|
STAGE_3a = rosetta.protocols.abinitio._protocols_abinitio_.Sta...
|
|
|
STAGE_3b = rosetta.protocols.abinitio._protocols_abinitio_.Sta...
|
|
|
STAGE_4 = rosetta.protocols.abinitio._protocols_abinitio_.Stag...
|
|
|
STRIPEHASH = rosetta.core.conformation._core_conformation_.Str...
|
|
|
SULFATION = rosetta.core.chemical._core_chemical_.VariantType....
|
|
|
SURFACE = rosetta.core.chemical._core_chemical_.ResiduePropert...
|
|
|
SWITCH_TO_FULLATOM = rosetta.protocols.abinitio._protocols_abi...
|
|
|
ScoreTypesRegistry = {} |
|
|
SingleBond = rosetta.core.chemical._core_chemical_.BondName.Si...
|
|
|
SingleBondOrder = rosetta.core.chemical._core_chemical_.BondOr...
|
|
|
TAUTOMER = rosetta.core.chemical._core_chemical_.ResidueProper...
|
|
|
THETA = rosetta.core.chemical._core_chemical_.CPParameter.THETA
|
|
|
THREEDGRID = rosetta.core.conformation._core_conformation_.Str...
|
|
|
THREE_PRIME_END_OH = rosetta.core.chemical._core_chemical_.Var...
|
|
|
THREE_PRIME_PACKABLE_PHOSPHATE = rosetta.core.chemical._core_c...
|
|
|
THREE_PRIME_PHOSPHATE = rosetta.core.chemical._core_chemical_....
|
|
|
TRANS_GG = rosetta.core.scoring._core_scoring_.Rama2BOffsetTab...
|
|
|
TRANS_GP = rosetta.core.scoring._core_scoring_.Rama2BOffsetTab...
|
|
|
TRANS_GV = rosetta.core.scoring._core_scoring_.Rama2BOffsetTab...
|
|
|
TRANS_GX = rosetta.core.scoring._core_scoring_.Rama2BOffsetTab...
|
|
|
TRANS_PG = rosetta.core.scoring._core_scoring_.Rama2BOffsetTab...
|
|
|
TRANS_PP = rosetta.core.scoring._core_scoring_.Rama2BOffsetTab...
|
|
|
TRANS_PV = rosetta.core.scoring._core_scoring_.Rama2BOffsetTab...
|
|
|
TRANS_PX = rosetta.core.scoring._core_scoring_.Rama2BOffsetTab...
|
|
|
TRANS_VG = rosetta.core.scoring._core_scoring_.Rama2BOffsetTab...
|
|
|
TRANS_VP = rosetta.core.scoring._core_scoring_.Rama2BOffsetTab...
|
|
|
TRANS_VV = rosetta.core.scoring._core_scoring_.Rama2BOffsetTab...
|
|
|
TRANS_VX = rosetta.core.scoring._core_scoring_.Rama2BOffsetTab...
|
|
|
TRANS_XG = rosetta.core.scoring._core_scoring_.Rama2BOffsetTab...
|
|
|
TRANS_XP = rosetta.core.scoring._core_scoring_.Rama2BOffsetTab...
|
|
|
TRANS_XV = rosetta.core.scoring._core_scoring_.Rama2BOffsetTab...
|
|
|
TRANS_XX = rosetta.core.scoring._core_scoring_.Rama2BOffsetTab...
|
|
|
TRIAZOLEMER = rosetta.core.chemical._core_chemical_.ResiduePro...
|
|
|
TRIMETHYLATION = rosetta.core.chemical._core_chemical_.Variant...
|
|
|
TripleBond = rosetta.core.chemical._core_chemical_.BondName.Tr...
|
|
|
TripleBondOrder = rosetta.core.chemical._core_chemical_.BondOr...
|
|
|
UNKNOWN_HYBRID = rosetta.core.chemical._core_chemical_.Hybridi...
|
|
|
UPPERTERM_TRUNC = rosetta.core.chemical._core_chemical_.Residu...
|
|
|
UPPERTERM_TRUNC_VARIANT = rosetta.core.chemical._core_chemical...
|
|
|
UPPER_TERMINUS = rosetta.core.chemical._core_chemical_.Residue...
|
|
|
UPPER_TERMINUS_VARIANT = rosetta.core.chemical._core_chemical_...
|
|
|
URONIC_ACID = rosetta.core.chemical._core_chemical_.ResiduePro...
|
|
|
URONIC_ACID_VARIANT = rosetta.core.chemical._core_chemical_.Va...
|
|
|
UnknownAromaticity = rosetta.core.chemical._core_chemical_.Bon...
|
|
|
UnknownBond = rosetta.core.chemical._core_chemical_.BondName.U...
|
|
|
UnknownBondOrder = rosetta.core.chemical._core_chemical_.BondO...
|
|
|
UnknownConjugability = rosetta.core.chemical._core_chemical_.B...
|
|
|
UnknownIsometry = rosetta.core.chemical._core_chemical_.BondIs...
|
|
|
UnknownRingness = rosetta.core.chemical._core_chemical_.BondRi...
|
|
|
VIRTUAL_BACKBONE_EXCEPT_C1PRIME = rosetta.core.chemical._core_...
|
|
|
VIRTUAL_BASE = rosetta.core.chemical._core_chemical_.VariantTy...
|
|
|
VIRTUAL_BASE_HEAVY_ATOM = rosetta.core.chemical._core_chemical...
|
|
|
VIRTUAL_BB = rosetta.core.chemical._core_chemical_.VariantType...
|
|
|
VIRTUAL_DNA_PHOSPHATE = rosetta.core.chemical._core_chemical_....
|
|
|
VIRTUAL_NTERM = rosetta.core.chemical._core_chemical_.VariantT...
|
|
|
VIRTUAL_O2PRIME_HYDROGEN = rosetta.core.chemical._core_chemica...
|
|
|
VIRTUAL_PHOSPHATE = rosetta.core.chemical._core_chemical_.Vari...
|
|
|
VIRTUAL_RESIDUE = rosetta.core.chemical._core_chemical_.Residu...
|
|
|
VIRTUAL_RESIDUE_VARIANT = rosetta.core.chemical._core_chemical...
|
|
|
VIRTUAL_RIBOSE = rosetta.core.chemical._core_chemical_.Variant...
|
|
|
VIRTUAL_RNA_RESIDUE = rosetta.core.chemical._core_chemical_.Va...
|
|
|
VIRTUAL_RNA_RESIDUE_EXCLUDE_PHOSPHATE = rosetta.core.chemical....
|
|
|
VIRTUAL_SIDE_CHAIN = rosetta.core.chemical._core_chemical_.Var...
|
|
|
WATER = rosetta.core.chemical._core_chemical_.ResidueProperty....
|
|
|
X11_COLORS = {'AliceBlue': (100, 240, 248, 255), 'AntiqueWhite... |
|
|
XC_AliceBlue = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_AntiqueWhite = rosetta.protocols.moves._protocols_moves_.X1...
|
|
|
XC_BlanchedAlmond = rosetta.protocols.moves._protocols_moves_....
|
|
|
XC_BlueViolet = rosetta.protocols.moves._protocols_moves_.X11C...
|
|
|
XC_CadetBlue = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_CornflowerBlue = rosetta.protocols.moves._protocols_moves_....
|
|
|
XC_DarkBlue = rosetta.protocols.moves._protocols_moves_.X11Col...
|
|
|
XC_DarkCyan = rosetta.protocols.moves._protocols_moves_.X11Col...
|
|
|
XC_DarkGoldenrod = rosetta.protocols.moves._protocols_moves_.X...
|
|
|
XC_DarkGray = rosetta.protocols.moves._protocols_moves_.X11Col...
|
|
|
XC_DarkGreen = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_DarkGrey = rosetta.protocols.moves._protocols_moves_.X11Col...
|
|
|
XC_DarkKhaki = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_DarkMagenta = rosetta.protocols.moves._protocols_moves_.X11...
|
|
|
XC_DarkOliveGreen = rosetta.protocols.moves._protocols_moves_....
|
|
|
XC_DarkOrange = rosetta.protocols.moves._protocols_moves_.X11C...
|
|
|
XC_DarkOrchid = rosetta.protocols.moves._protocols_moves_.X11C...
|
|
|
XC_DarkRed = rosetta.protocols.moves._protocols_moves_.X11Colo...
|
|
|
XC_DarkSalmon = rosetta.protocols.moves._protocols_moves_.X11C...
|
|
|
XC_DarkSeaGreen = rosetta.protocols.moves._protocols_moves_.X1...
|
|
|
XC_DarkSlateBlue = rosetta.protocols.moves._protocols_moves_.X...
|
|
|
XC_DarkSlateGray = rosetta.protocols.moves._protocols_moves_.X...
|
|
|
XC_DarkSlateGrey = rosetta.protocols.moves._protocols_moves_.X...
|
|
|
XC_DarkTurquoise = rosetta.protocols.moves._protocols_moves_.X...
|
|
|
XC_DarkViolet = rosetta.protocols.moves._protocols_moves_.X11C...
|
|
|
XC_DebianRed = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_DeepPink = rosetta.protocols.moves._protocols_moves_.X11Col...
|
|
|
XC_DeepSkyBlue = rosetta.protocols.moves._protocols_moves_.X11...
|
|
|
XC_DimGray = rosetta.protocols.moves._protocols_moves_.X11Colo...
|
|
|
XC_DimGrey = rosetta.protocols.moves._protocols_moves_.X11Colo...
|
|
|
XC_DodgerBlue = rosetta.protocols.moves._protocols_moves_.X11C...
|
|
|
XC_FloralWhite = rosetta.protocols.moves._protocols_moves_.X11...
|
|
|
XC_ForestGreen = rosetta.protocols.moves._protocols_moves_.X11...
|
|
|
XC_GhostWhite = rosetta.protocols.moves._protocols_moves_.X11C...
|
|
|
XC_GreenYellow = rosetta.protocols.moves._protocols_moves_.X11...
|
|
|
XC_HotPink = rosetta.protocols.moves._protocols_moves_.X11Colo...
|
|
|
XC_IndianRed = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_LavenderBlush = rosetta.protocols.moves._protocols_moves_.X...
|
|
|
XC_LawnGreen = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_LemonChiffon = rosetta.protocols.moves._protocols_moves_.X1...
|
|
|
XC_LightBlue = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_LightCoral = rosetta.protocols.moves._protocols_moves_.X11C...
|
|
|
XC_LightCyan = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_LightGoldenrod = rosetta.protocols.moves._protocols_moves_....
|
|
|
XC_LightGoldenrodYellow = rosetta.protocols.moves._protocols_m...
|
|
|
XC_LightGray = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_LightGreen = rosetta.protocols.moves._protocols_moves_.X11C...
|
|
|
XC_LightGrey = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_LightPink = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_LightSalmon = rosetta.protocols.moves._protocols_moves_.X11...
|
|
|
XC_LightSeaGreen = rosetta.protocols.moves._protocols_moves_.X...
|
|
|
XC_LightSkyBlue = rosetta.protocols.moves._protocols_moves_.X1...
|
|
|
XC_LightSlateBlue = rosetta.protocols.moves._protocols_moves_....
|
|
|
XC_LightSlateGray = rosetta.protocols.moves._protocols_moves_....
|
|
|
XC_LightSlateGrey = rosetta.protocols.moves._protocols_moves_....
|
|
|
XC_LightSteelBlue = rosetta.protocols.moves._protocols_moves_....
|
|
|
XC_LightYellow = rosetta.protocols.moves._protocols_moves_.X11...
|
|
|
XC_LimeGreen = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_MediumAquamarine = rosetta.protocols.moves._protocols_moves...
|
|
|
XC_MediumBlue = rosetta.protocols.moves._protocols_moves_.X11C...
|
|
|
XC_MediumOrchid = rosetta.protocols.moves._protocols_moves_.X1...
|
|
|
XC_MediumPurple = rosetta.protocols.moves._protocols_moves_.X1...
|
|
|
XC_MediumSeaGreen = rosetta.protocols.moves._protocols_moves_....
|
|
|
XC_MediumSlateBlue = rosetta.protocols.moves._protocols_moves_...
|
|
|
XC_MediumSpringGreen = rosetta.protocols.moves._protocols_move...
|
|
|
XC_MediumTurquoise = rosetta.protocols.moves._protocols_moves_...
|
|
|
XC_MediumVioletRed = rosetta.protocols.moves._protocols_moves_...
|
|
|
XC_MidnightBlue = rosetta.protocols.moves._protocols_moves_.X1...
|
|
|
XC_MintCream = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_MistyRose = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_NavajoWhite = rosetta.protocols.moves._protocols_moves_.X11...
|
|
|
XC_NavyBlue = rosetta.protocols.moves._protocols_moves_.X11Col...
|
|
|
XC_OldLace = rosetta.protocols.moves._protocols_moves_.X11Colo...
|
|
|
XC_OliveDrab = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_OrangeRed = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_PaleGoldenrod = rosetta.protocols.moves._protocols_moves_.X...
|
|
|
XC_PaleGreen = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_PaleTurquoise = rosetta.protocols.moves._protocols_moves_.X...
|
|
|
XC_PaleVioletRed = rosetta.protocols.moves._protocols_moves_.X...
|
|
|
XC_PapayaWhip = rosetta.protocols.moves._protocols_moves_.X11C...
|
|
|
XC_PeachPuff = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_PowderBlue = rosetta.protocols.moves._protocols_moves_.X11C...
|
|
|
XC_RosyBrown = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_RoyalBlue = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_SaddleBrown = rosetta.protocols.moves._protocols_moves_.X11...
|
|
|
XC_SandyBrown = rosetta.protocols.moves._protocols_moves_.X11C...
|
|
|
XC_SeaGreen = rosetta.protocols.moves._protocols_moves_.X11Col...
|
|
|
XC_SkyBlue = rosetta.protocols.moves._protocols_moves_.X11Colo...
|
|
|
XC_SlateBlue = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_SlateGray = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_SlateGrey = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_SpringGreen = rosetta.protocols.moves._protocols_moves_.X11...
|
|
|
XC_SteelBlue = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_VioletRed = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_WhiteSmoke = rosetta.protocols.moves._protocols_moves_.X11C...
|
|
|
XC_YellowGreen = rosetta.protocols.moves._protocols_moves_.X11...
|
|
|
XC_aquamarine = rosetta.protocols.moves._protocols_moves_.X11C...
|
|
|
XC_azure = rosetta.protocols.moves._protocols_moves_.X11Colors...
|
|
|
XC_beige = rosetta.protocols.moves._protocols_moves_.X11Colors...
|
|
|
XC_bisque = rosetta.protocols.moves._protocols_moves_.X11Color...
|
|
|
XC_black = rosetta.protocols.moves._protocols_moves_.X11Colors...
|
|
|
XC_blue = rosetta.protocols.moves._protocols_moves_.X11Colors....
|
|
|
XC_blue1 = rosetta.protocols.moves._protocols_moves_.X11Colors...
|
|
|
XC_blue2 = rosetta.protocols.moves._protocols_moves_.X11Colors...
|
|
|
XC_blue3 = rosetta.protocols.moves._protocols_moves_.X11Colors...
|
|
|
XC_blue4 = rosetta.protocols.moves._protocols_moves_.X11Colors...
|
|
|
XC_brown = rosetta.protocols.moves._protocols_moves_.X11Colors...
|
|
|
XC_burlywood = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_chartreuse = rosetta.protocols.moves._protocols_moves_.X11C...
|
|
|
XC_chocolate = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_coral = rosetta.protocols.moves._protocols_moves_.X11Colors...
|
|
|
XC_cornsilk = rosetta.protocols.moves._protocols_moves_.X11Col...
|
|
|
XC_cyan = rosetta.protocols.moves._protocols_moves_.X11Colors....
|
|
|
XC_firebrick = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_first_color = rosetta.protocols.moves._protocols_moves_.X11...
|
|
|
XC_gainsboro = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_gold = rosetta.protocols.moves._protocols_moves_.X11Colors....
|
|
|
XC_goldenrod = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_gray = rosetta.protocols.moves._protocols_moves_.X11Colors....
|
|
|
XC_gray0 = rosetta.protocols.moves._protocols_moves_.X11Colors...
|
|
|
XC_gray10 = rosetta.protocols.moves._protocols_moves_.X11Color...
|
|
|
XC_gray100 = rosetta.protocols.moves._protocols_moves_.X11Colo...
|
|
|
XC_gray20 = rosetta.protocols.moves._protocols_moves_.X11Color...
|
|
|
XC_gray30 = rosetta.protocols.moves._protocols_moves_.X11Color...
|
|
|
XC_gray40 = rosetta.protocols.moves._protocols_moves_.X11Color...
|
|
|
XC_gray50 = rosetta.protocols.moves._protocols_moves_.X11Color...
|
|
|
XC_gray60 = rosetta.protocols.moves._protocols_moves_.X11Color...
|
|
|
XC_gray70 = rosetta.protocols.moves._protocols_moves_.X11Color...
|
|
|
XC_gray80 = rosetta.protocols.moves._protocols_moves_.X11Color...
|
|
|
XC_gray90 = rosetta.protocols.moves._protocols_moves_.X11Color...
|
|
|
XC_green = rosetta.protocols.moves._protocols_moves_.X11Colors...
|
|
|
XC_green1 = rosetta.protocols.moves._protocols_moves_.X11Color...
|
|
|
XC_green2 = rosetta.protocols.moves._protocols_moves_.X11Color...
|
|
|
XC_green3 = rosetta.protocols.moves._protocols_moves_.X11Color...
|
|
|
XC_green4 = rosetta.protocols.moves._protocols_moves_.X11Color...
|
|
|
XC_honeydew = rosetta.protocols.moves._protocols_moves_.X11Col...
|
|
|
XC_ivory = rosetta.protocols.moves._protocols_moves_.X11Colors...
|
|
|
XC_khaki = rosetta.protocols.moves._protocols_moves_.X11Colors...
|
|
|
XC_last_color = rosetta.protocols.moves._protocols_moves_.X11C...
|
|
|
XC_lavender = rosetta.protocols.moves._protocols_moves_.X11Col...
|
|
|
XC_linen = rosetta.protocols.moves._protocols_moves_.X11Colors...
|
|
|
XC_magenta = rosetta.protocols.moves._protocols_moves_.X11Colo...
|
|
|
XC_maroon = rosetta.protocols.moves._protocols_moves_.X11Color...
|
|
|
XC_moccasin = rosetta.protocols.moves._protocols_moves_.X11Col...
|
|
|
XC_navy = rosetta.protocols.moves._protocols_moves_.X11Colors....
|
|
|
XC_orange = rosetta.protocols.moves._protocols_moves_.X11Color...
|
|
|
XC_orchid = rosetta.protocols.moves._protocols_moves_.X11Color...
|
|
|
XC_peru = rosetta.protocols.moves._protocols_moves_.X11Colors....
|
|
|
XC_pink = rosetta.protocols.moves._protocols_moves_.X11Colors....
|
|
|
XC_plum = rosetta.protocols.moves._protocols_moves_.X11Colors....
|
|
|
XC_purple = rosetta.protocols.moves._protocols_moves_.X11Color...
|
|
|
XC_red = rosetta.protocols.moves._protocols_moves_.X11Colors.X...
|
|
|
XC_red1 = rosetta.protocols.moves._protocols_moves_.X11Colors....
|
|
|
XC_red2 = rosetta.protocols.moves._protocols_moves_.X11Colors....
|
|
|
XC_red3 = rosetta.protocols.moves._protocols_moves_.X11Colors....
|
|
|
XC_red4 = rosetta.protocols.moves._protocols_moves_.X11Colors....
|
|
|
XC_salmon = rosetta.protocols.moves._protocols_moves_.X11Color...
|
|
|
XC_seashell = rosetta.protocols.moves._protocols_moves_.X11Col...
|
|
|
XC_sienna = rosetta.protocols.moves._protocols_moves_.X11Color...
|
|
|
XC_snow = rosetta.protocols.moves._protocols_moves_.X11Colors....
|
|
|
XC_snow1 = rosetta.protocols.moves._protocols_moves_.X11Colors...
|
|
|
XC_snow2 = rosetta.protocols.moves._protocols_moves_.X11Colors...
|
|
|
XC_snow3 = rosetta.protocols.moves._protocols_moves_.X11Colors...
|
|
|
XC_snow4 = rosetta.protocols.moves._protocols_moves_.X11Colors...
|
|
|
XC_tan = rosetta.protocols.moves._protocols_moves_.X11Colors.X...
|
|
|
XC_thistle = rosetta.protocols.moves._protocols_moves_.X11Colo...
|
|
|
XC_tomato = rosetta.protocols.moves._protocols_moves_.X11Color...
|
|
|
XC_turquoise = rosetta.protocols.moves._protocols_moves_.X11Co...
|
|
|
XC_violet = rosetta.protocols.moves._protocols_moves_.X11Color...
|
|
|
XC_wheat = rosetta.protocols.moves._protocols_moves_.X11Colors...
|
|
|
XC_white = rosetta.protocols.moves._protocols_moves_.X11Colors...
|
|
|
XC_yellow = rosetta.protocols.moves._protocols_moves_.X11Color...
|
|
|
ZIsometry = rosetta.core.chemical._core_chemical_.BondIsometry...
|
|
|
ZN_CONNECT = rosetta.core.chemical._core_chemical_.VariantType...
|
|
|
_PLATFORM = 'macos' |
|
|
_ROSETTA_DATABASE_PATH_ = None
|
|
|
_ScoreTypesRegistryByType_ = [|base --> <class 'rosetta.core.s... |
|
|
__package__ = 'rosetta' |
|
|
_mem_EnergyCreators_ = [] |
|
|
_mem_EnergyMethods_ = [] |
|
|
_python_py_exit_callback = None
|
|
|
aa_ala = rosetta.core.chemical._core_chemical_.AA.aa_ala
|
|
|
aa_arg = rosetta.core.chemical._core_chemical_.AA.aa_arg
|
|
|
aa_asn = rosetta.core.chemical._core_chemical_.AA.aa_asn
|
|
|
aa_asp = rosetta.core.chemical._core_chemical_.AA.aa_asp
|
|
|
aa_b3a = rosetta.core.chemical._core_chemical_.AA.aa_b3a
|
|
|
aa_b3c = rosetta.core.chemical._core_chemical_.AA.aa_b3c
|
|
|
aa_b3cisACHC = rosetta.core.chemical._core_chemical_.AA.aa_b3c...
|
|
|
aa_b3cisACPC = rosetta.core.chemical._core_chemical_.AA.aa_b3c...
|
|
|
aa_b3cisACPrC = rosetta.core.chemical._core_chemical_.AA.aa_b3...
|
|
|
aa_b3d = rosetta.core.chemical._core_chemical_.AA.aa_b3d
|
|
|
aa_b3e = rosetta.core.chemical._core_chemical_.AA.aa_b3e
|
|
|
aa_b3f = rosetta.core.chemical._core_chemical_.AA.aa_b3f
|
|
|
aa_b3g = rosetta.core.chemical._core_chemical_.AA.aa_b3g
|
|
|
aa_b3h = rosetta.core.chemical._core_chemical_.AA.aa_b3h
|
|
|
aa_b3i = rosetta.core.chemical._core_chemical_.AA.aa_b3i
|
|
|
aa_b3k = rosetta.core.chemical._core_chemical_.AA.aa_b3k
|
|
|
aa_b3l = rosetta.core.chemical._core_chemical_.AA.aa_b3l
|
|
|
aa_b3m = rosetta.core.chemical._core_chemical_.AA.aa_b3m
|
|
|
aa_b3n = rosetta.core.chemical._core_chemical_.AA.aa_b3n
|
|
|
aa_b3p = rosetta.core.chemical._core_chemical_.AA.aa_b3p
|
|
|
aa_b3q = rosetta.core.chemical._core_chemical_.AA.aa_b3q
|
|
|
aa_b3r = rosetta.core.chemical._core_chemical_.AA.aa_b3r
|
|
|
aa_b3s = rosetta.core.chemical._core_chemical_.AA.aa_b3s
|
|
|
aa_b3t = rosetta.core.chemical._core_chemical_.AA.aa_b3t
|
|
|
aa_b3v = rosetta.core.chemical._core_chemical_.AA.aa_b3v
|
|
|
aa_b3w = rosetta.core.chemical._core_chemical_.AA.aa_b3w
|
|
|
aa_b3y = rosetta.core.chemical._core_chemical_.AA.aa_b3y
|
|
|
aa_cmp = rosetta.core.scoring._core_scoring_.ScoreType.aa_cmp
|
|
|
aa_cys = rosetta.core.chemical._core_chemical_.AA.aa_cys
|
|
|
aa_dal = rosetta.core.chemical._core_chemical_.AA.aa_dal
|
|
|
aa_dan = rosetta.core.chemical._core_chemical_.AA.aa_dan
|
|
|
aa_dar = rosetta.core.chemical._core_chemical_.AA.aa_dar
|
|
|
aa_das = rosetta.core.chemical._core_chemical_.AA.aa_das
|
|
|
aa_dcs = rosetta.core.chemical._core_chemical_.AA.aa_dcs
|
|
|
aa_dgn = rosetta.core.chemical._core_chemical_.AA.aa_dgn
|
|
|
aa_dgu = rosetta.core.chemical._core_chemical_.AA.aa_dgu
|
|
|
aa_dhi = rosetta.core.chemical._core_chemical_.AA.aa_dhi
|
|
|
aa_dil = rosetta.core.chemical._core_chemical_.AA.aa_dil
|
|
|
aa_dle = rosetta.core.chemical._core_chemical_.AA.aa_dle
|
|
|
aa_dly = rosetta.core.chemical._core_chemical_.AA.aa_dly
|
|
|
aa_dme = rosetta.core.chemical._core_chemical_.AA.aa_dme
|
|
|
aa_dph = rosetta.core.chemical._core_chemical_.AA.aa_dph
|
|
|
aa_dpr = rosetta.core.chemical._core_chemical_.AA.aa_dpr
|
|
|
aa_dse = rosetta.core.chemical._core_chemical_.AA.aa_dse
|
|
|
aa_dth = rosetta.core.chemical._core_chemical_.AA.aa_dth
|
|
|
aa_dtr = rosetta.core.chemical._core_chemical_.AA.aa_dtr
|
|
|
aa_dty = rosetta.core.chemical._core_chemical_.AA.aa_dty
|
|
|
aa_dva = rosetta.core.chemical._core_chemical_.AA.aa_dva
|
|
|
aa_gln = rosetta.core.chemical._core_chemical_.AA.aa_gln
|
|
|
aa_glu = rosetta.core.chemical._core_chemical_.AA.aa_glu
|
|
|
aa_gly = rosetta.core.chemical._core_chemical_.AA.aa_gly
|
|
|
aa_h2o = rosetta.core.chemical._core_chemical_.AA.aa_h2o
|
|
|
aa_his = rosetta.core.chemical._core_chemical_.AA.aa_his
|
|
|
aa_ile = rosetta.core.chemical._core_chemical_.AA.aa_ile
|
|
|
aa_leu = rosetta.core.chemical._core_chemical_.AA.aa_leu
|
|
|
aa_lys = rosetta.core.chemical._core_chemical_.AA.aa_lys
|
|
|
aa_met = rosetta.core.chemical._core_chemical_.AA.aa_met
|
|
|
aa_phe = rosetta.core.chemical._core_chemical_.AA.aa_phe
|
|
|
aa_pro = rosetta.core.chemical._core_chemical_.AA.aa_pro
|
|
|
aa_ser = rosetta.core.chemical._core_chemical_.AA.aa_ser
|
|
|
aa_thr = rosetta.core.chemical._core_chemical_.AA.aa_thr
|
|
|
aa_trp = rosetta.core.chemical._core_chemical_.AA.aa_trp
|
|
|
aa_tyr = rosetta.core.chemical._core_chemical_.AA.aa_tyr
|
|
|
aa_unk = rosetta.core.chemical._core_chemical_.AA.aa_unk
|
|
|
aa_unp = rosetta.core.chemical._core_chemical_.AA.aa_unp
|
|
|
aa_val = rosetta.core.chemical._core_chemical_.AA.aa_val
|
|
|
aa_vrt = rosetta.core.chemical._core_chemical_.AA.aa_vrt
|
|
|
abego = rosetta.core.scoring._core_scoring_.ScoreType.abego
|
|
|
accept_reject = rosetta.protocols.moves._protocols_moves_.Stat...
|
|
|
all_stats = rosetta.protocols.moves._protocols_moves_.StatsTyp...
|
|
|
angle_constraint = rosetta.core.scoring._core_scoring_.ScoreTy...
|
|
|
atom_pair_constraint = rosetta.core.scoring._core_scoring_.Sco...
|
|
|
backbone_stub_constraint = rosetta.core.scoring._core_scoring_...
|
|
|
backbone_stub_linear_constraint = rosetta.core.scoring._core_s...
|
|
|
big_bin_constraint = rosetta.core.scoring._core_scoring_.Score...
|
|
|
bond_geometry = rosetta.core.scoring._core_scoring_.ScoreType....
|
|
|
burial = rosetta.core.scoring._core_scoring_.ScoreType.burial
|
|
|
cart_bonded = rosetta.core.scoring._core_scoring_.ScoreType.ca...
|
|
|
cart_bonded_angle = rosetta.core.scoring._core_scoring_.ScoreT...
|
|
|
cart_bonded_length = rosetta.core.scoring._core_scoring_.Score...
|
|
|
cart_bonded_torsion = rosetta.core.scoring._core_scoring_.Scor...
|
|
|
cbeta = rosetta.core.scoring._core_scoring_.ScoreType.cbeta
|
|
|
cbeta_smooth = rosetta.core.scoring._core_scoring_.ScoreType.c...
|
|
|
cen_env_smooth = rosetta.core.scoring._core_scoring_.ScoreType...
|
|
|
cen_hb = rosetta.core.scoring._core_scoring_.ScoreType.cen_hb
|
|
|
cen_pair_smooth = rosetta.core.scoring._core_scoring_.ScoreTyp...
|
|
|
cen_rot_cbeta = rosetta.core.scoring._core_scoring_.ScoreType....
|
|
|
cen_rot_dun = rosetta.core.scoring._core_scoring_.ScoreType.ce...
|
|
|
cen_rot_env = rosetta.core.scoring._core_scoring_.ScoreType.ce...
|
|
|
cen_rot_pair = rosetta.core.scoring._core_scoring_.ScoreType.c...
|
|
|
cen_rot_pair_ang = rosetta.core.scoring._core_scoring_.ScoreTy...
|
|
|
cen_rot_pair_dih = rosetta.core.scoring._core_scoring_.ScoreTy...
|
|
|
cenpack = rosetta.core.scoring._core_scoring_.ScoreType.cenpack
|
|
|
cenpack_smooth = rosetta.core.scoring._core_scoring_.ScoreType...
|
|
|
centroid_neighbor_graph = rosetta.core.scoring._core_scoring_....
|
|
|
ch_bond = rosetta.core.scoring._core_scoring_.ScoreType.ch_bond
|
|
|
ch_bond_bb_bb = rosetta.core.scoring._core_scoring_.ScoreType....
|
|
|
ch_bond_bb_sc = rosetta.core.scoring._core_scoring_.ScoreType....
|
|
|
ch_bond_sc_sc = rosetta.core.scoring._core_scoring_.ScoreType....
|
|
|
chainID = rosetta.protocols.loops._protocols_loops_.LoopConfig...
|
|
|
chainbreak = rosetta.core.scoring._core_scoring_.ScoreType.cha...
|
|
|
co = rosetta.core.scoring._core_scoring_.ScoreType.co
|
|
|
coarse_beadlj = rosetta.core.scoring._core_scoring_.ScoreType....
|
|
|
coarse_fa_atr = rosetta.core.scoring._core_scoring_.ScoreType....
|
|
|
coarse_fa_rep = rosetta.core.scoring._core_scoring_.ScoreType....
|
|
|
coarse_fa_sol = rosetta.core.scoring._core_scoring_.ScoreType....
|
|
|
config = {u'basic': True, u'core': True, u'debug': False, u'lo... |
|
|
config_file_name = '/Users/benchmark/rosetta/PyRosetta/source/... |
|
|
constant_constraint = rosetta.core.scoring._core_scoring_.Scor...
|
|
|
coordinate_constraint = rosetta.core.scoring._core_scoring_.Sc...
|
|
|
csa = rosetta.core.scoring._core_scoring_.ScoreType.csa
|
|
|
cst_res_data = rosetta.core.scoring._core_scoring_.min_single_...
|
|
|
cst_respair_data = rosetta.core.scoring._core_scoring_.min_pai...
|
|
|
custom_atom_pair = rosetta.core.scoring._core_scoring_.ScoreTy...
|
|
|
cut_point = rosetta.protocols.loops._protocols_loops_.ResidueI...
|
|
|
d2h_sa = rosetta.core.scoring._core_scoring_.ScoreType.d2h_sa
|
|
|
dab_sasa = rosetta.core.scoring._core_scoring_.ScoreType.dab_sasa
|
|
|
dab_sev = rosetta.core.scoring._core_scoring_.ScoreType.dab_sev
|
|
|
dc = rosetta.core.scoring._core_scoring_.ScoreType.dc
|
|
|
dihedral_constraint = rosetta.core.scoring._core_scoring_.Scor...
|
|
|
distance_chainbreak = rosetta.core.scoring._core_scoring_.Scor...
|
|
|
dna_base_distance = rosetta.core.scoring._core_scoring_.ScoreT...
|
|
|
dna_bb_torsion = rosetta.core.scoring._core_scoring_.ScoreType...
|
|
|
dna_bp = rosetta.core.scoring._core_scoring_.ScoreType.dna_bp
|
|
|
dna_bs = rosetta.core.scoring._core_scoring_.ScoreType.dna_bs
|
|
|
dna_chi = rosetta.core.scoring._core_scoring_.ScoreType.dna_chi
|
|
|
dna_dr = rosetta.core.scoring._core_scoring_.ScoreType.dna_dr
|
|
|
dna_sugar_close = rosetta.core.scoring._core_scoring_.ScoreTyp...
|
|
|
dock_ens_conf = rosetta.core.scoring._core_scoring_.ScoreType....
|
|
|
dof_constraint = rosetta.core.scoring._core_scoring_.ScoreType...
|
|
|
dslf_ca_dih = rosetta.core.scoring._core_scoring_.ScoreType.ds...
|
|
|
dslf_cbs_ds = rosetta.core.scoring._core_scoring_.ScoreType.ds...
|
|
|
dslf_cs_ang = rosetta.core.scoring._core_scoring_.ScoreType.ds...
|
|
|
dslf_fa13 = rosetta.core.scoring._core_scoring_.ScoreType.dslf...
|
|
|
dslf_ss_dih = rosetta.core.scoring._core_scoring_.ScoreType.ds...
|
|
|
dslf_ss_dst = rosetta.core.scoring._core_scoring_.ScoreType.ds...
|
|
|
dslfc_RT = rosetta.core.scoring._core_scoring_.ScoreType.dslfc_RT
|
|
|
dslfc_ang = rosetta.core.scoring._core_scoring_.ScoreType.dslf...
|
|
|
dslfc_bb_dih = rosetta.core.scoring._core_scoring_.ScoreType.d...
|
|
|
dslfc_cb_dih = rosetta.core.scoring._core_scoring_.ScoreType.d...
|
|
|
dslfc_cb_dst = rosetta.core.scoring._core_scoring_.ScoreType.d...
|
|
|
dslfc_cen_dst = rosetta.core.scoring._core_scoring_.ScoreType....
|
|
|
dslfc_rot = rosetta.core.scoring._core_scoring_.ScoreType.dslf...
|
|
|
dslfc_trans = rosetta.core.scoring._core_scoring_.ScoreType.ds...
|
|
|
dummy_score_type = rosetta.core.scoring._core_scoring_.ScoreTy...
|
|
|
dunbrack_constraint = rosetta.core.scoring._core_scoring_.Scor...
|
|
|
e_pH = rosetta.core.scoring._core_scoring_.ScoreType.e_pH
|
|
|
elec_dens_atomwise = rosetta.core.scoring._core_scoring_.Score...
|
|
|
elec_dens_fast = rosetta.core.scoring._core_scoring_.ScoreType...
|
|
|
elec_dens_whole_structure_allatom = rosetta.core.scoring._core...
|
|
|
elec_dens_whole_structure_ca = rosetta.core.scoring._core_scor...
|
|
|
elec_dens_window = rosetta.core.scoring._core_scoring_.ScoreTy...
|
|
|
elec_pair_nblist = rosetta.core.scoring._core_scoring_.min_pai...
|
|
|
end_of_score_type_enumeration = rosetta.core.scoring._core_sco...
|
|
|
env = rosetta.core.scoring._core_scoring_.ScoreType.env
|
|
|
envsmooth = rosetta.core.scoring._core_scoring_.ScoreType.envs...
|
|
|
etab_classic_intrares_pair_nblist = rosetta.core.scoring._core...
|
|
|
etab_classic_intrares_single_nblist = rosetta.core.scoring._co...
|
|
|
etab_pair_nblist = rosetta.core.scoring._core_scoring_.min_pai...
|
|
|
etab_single_nblist = rosetta.core.scoring._core_scoring_.min_s...
|
|
|
extend = rosetta.protocols.loops._protocols_loops_.LoopConfigu...
|
|
|
extras = rosetta.protocols.loops._protocols_loops_.LoopConfigu...
|
|
|
fa_atr = rosetta.core.scoring._core_scoring_.ScoreType.fa_atr
|
|
|
fa_atr_dummy = rosetta.core.scoring._core_scoring_.ScoreType.f...
|
|
|
fa_cust_pair_dist = rosetta.core.scoring._core_scoring_.ScoreT...
|
|
|
fa_custom_pair_dist_data = rosetta.core.scoring._core_scoring_...
|
|
|
fa_dslf_respair_data = rosetta.core.scoring._core_scoring_.min...
|
|
|
fa_dun = rosetta.core.scoring._core_scoring_.ScoreType.fa_dun
|
|
|
fa_dun_dev = rosetta.core.scoring._core_scoring_.ScoreType.fa_...
|
|
|
fa_dun_rot = rosetta.core.scoring._core_scoring_.ScoreType.fa_...
|
|
|
fa_dun_semi = rosetta.core.scoring._core_scoring_.ScoreType.fa...
|
|
|
fa_elec = rosetta.core.scoring._core_scoring_.ScoreType.fa_elec
|
|
|
fa_elec_aro_all = rosetta.core.scoring._core_scoring_.ScoreTyp...
|
|
|
fa_elec_aro_aro = rosetta.core.scoring._core_scoring_.ScoreTyp...
|
|
|
fa_elec_bb_bb = rosetta.core.scoring._core_scoring_.ScoreType....
|
|
|
fa_elec_bb_sc = rosetta.core.scoring._core_scoring_.ScoreType....
|
|
|
fa_elec_rna_base_base = rosetta.core.scoring._core_scoring_.Sc...
|
|
|
fa_elec_rna_base_base_fast = rosetta.core.scoring._core_scorin...
|
|
|
fa_elec_rna_phos_base = rosetta.core.scoring._core_scoring_.Sc...
|
|
|
fa_elec_rna_phos_base_fast = rosetta.core.scoring._core_scorin...
|
|
|
fa_elec_rna_phos_phos = rosetta.core.scoring._core_scoring_.Sc...
|
|
|
fa_elec_rna_phos_phos_fast = rosetta.core.scoring._core_scorin...
|
|
|
fa_elec_rna_phos_sugr = rosetta.core.scoring._core_scoring_.Sc...
|
|
|
fa_elec_rna_phos_sugr_fast = rosetta.core.scoring._core_scorin...
|
|
|
fa_elec_rna_sugr_base = rosetta.core.scoring._core_scoring_.Sc...
|
|
|
fa_elec_rna_sugr_base_fast = rosetta.core.scoring._core_scorin...
|
|
|
fa_elec_rna_sugr_sugr = rosetta.core.scoring._core_scoring_.Sc...
|
|
|
fa_elec_rna_sugr_sugr_fast = rosetta.core.scoring._core_scorin...
|
|
|
fa_elec_sc_sc = rosetta.core.scoring._core_scoring_.ScoreType....
|
|
|
fa_grpelec = rosetta.core.scoring._core_scoring_.ScoreType.fa_...
|
|
|
fa_intra_RNA_base_phos_atr = rosetta.core.scoring._core_scorin...
|
|
|
fa_intra_RNA_base_phos_rep = rosetta.core.scoring._core_scorin...
|
|
|
fa_intra_RNA_base_phos_sol = rosetta.core.scoring._core_scorin...
|
|
|
fa_intra_atr = rosetta.core.scoring._core_scoring_.ScoreType.f...
|
|
|
fa_intra_atr_xover4 = rosetta.core.scoring._core_scoring_.Scor...
|
|
|
fa_intra_rep = rosetta.core.scoring._core_scoring_.ScoreType.f...
|
|
|
fa_intra_rep_xover4 = rosetta.core.scoring._core_scoring_.Scor...
|
|
|
fa_intra_sol = rosetta.core.scoring._core_scoring_.ScoreType.f...
|
|
|
fa_intra_sol_xover4 = rosetta.core.scoring._core_scoring_.Scor...
|
|
|
fa_mbenv = rosetta.core.scoring._core_scoring_.ScoreType.fa_mbenv
|
|
|
fa_mbsolv = rosetta.core.scoring._core_scoring_.ScoreType.fa_m...
|
|
|
fa_pair = rosetta.core.scoring._core_scoring_.ScoreType.fa_pair
|
|
|
fa_pair_aro_aro = rosetta.core.scoring._core_scoring_.ScoreTyp...
|
|
|
fa_pair_aro_pol = rosetta.core.scoring._core_scoring_.ScoreTyp...
|
|
|
fa_pair_pol_pol = rosetta.core.scoring._core_scoring_.ScoreTyp...
|
|
|
fa_plane = rosetta.core.scoring._core_scoring_.ScoreType.fa_plane
|
|
|
fa_rep = rosetta.core.scoring._core_scoring_.ScoreType.fa_rep
|
|
|
fa_rep_dummy = rosetta.core.scoring._core_scoring_.ScoreType.f...
|
|
|
fa_sol = rosetta.core.scoring._core_scoring_.ScoreType.fa_sol
|
|
|
fa_sol_dummy = rosetta.core.scoring._core_scoring_.ScoreType.f...
|
|
|
fa_stack = rosetta.core.scoring._core_scoring_.ScoreType.fa_stack
|
|
|
fa_stack_aro = rosetta.core.scoring._core_scoring_.ScoreType.f...
|
|
|
fa_stack_lower = rosetta.core.scoring._core_scoring_.ScoreType...
|
|
|
fa_stack_upper = rosetta.core.scoring._core_scoring_.ScoreType...
|
|
|
facts_elec = rosetta.core.scoring._core_scoring_.ScoreType.fac...
|
|
|
facts_sasa = rosetta.core.scoring._core_scoring_.ScoreType.fac...
|
|
|
facts_solv = rosetta.core.scoring._core_scoring_.ScoreType.fac...
|
|
|
fastsaxs = rosetta.core.scoring._core_scoring_.ScoreType.fastsaxs
|
|
|
fiberdiffraction = rosetta.core.scoring._core_scoring_.ScoreTy...
|
|
|
fiberdiffractiondens = rosetta.core.scoring._core_scoring_.Sco...
|
|
|
first_DNA_aa = rosetta.core.chemical._core_chemical_.AA.first_...
|
|
|
first_D_aa = rosetta.core.chemical._core_chemical_.AA.first_D_aa
|
|
|
first_beta3_aa = rosetta.core.chemical._core_chemical_.AA.firs...
|
|
|
free_2HOprime = rosetta.core.scoring._core_scoring_.ScoreType....
|
|
|
free_base = rosetta.core.scoring._core_scoring_.ScoreType.free...
|
|
|
free_dof = rosetta.core.scoring._core_scoring_.ScoreType.free_dof
|
|
|
free_res = rosetta.core.scoring._core_scoring_.ScoreType.free_res
|
|
|
free_side_chain = rosetta.core.scoring._core_scoring_.ScoreTyp...
|
|
|
free_suite = rosetta.core.scoring._core_scoring_.ScoreType.fre...
|
|
|
gauss = rosetta.core.scoring._core_scoring_.ScoreType.gauss
|
|
|
gb_elec = rosetta.core.scoring._core_scoring_.ScoreType.gb_elec
|
|
|
geom_sol = rosetta.core.scoring._core_scoring_.ScoreType.geom_sol
|
|
|
geom_sol_fast = rosetta.core.scoring._core_scoring_.ScoreType....
|
|
|
geom_sol_fast_intra_RNA = rosetta.core.scoring._core_scoring_....
|
|
|
geom_sol_intra_RNA = rosetta.core.scoring._core_scoring_.Score...
|
|
|
geom_solv_pair_nblist = rosetta.core.scoring._core_scoring_.mi...
|
|
|
goap = rosetta.core.scoring._core_scoring_.ScoreType.goap
|
|
|
goap_angle = rosetta.core.scoring._core_scoring_.ScoreType.goa...
|
|
|
goap_dist = rosetta.core.scoring._core_scoring_.ScoreType.goap...
|
|
|
h2o_hbond = rosetta.core.scoring._core_scoring_.ScoreType.h2o_...
|
|
|
h2o_intra = rosetta.core.scoring._core_scoring_.ScoreType.h2o_...
|
|
|
hack_aro = rosetta.core.scoring._core_scoring_.ScoreType.hack_aro
|
|
|
hbond = rosetta.core.scoring._core_scoring_.ScoreType.hbond
|
|
|
hbond_bb_sc = rosetta.core.scoring._core_scoring_.ScoreType.hb...
|
|
|
hbond_intra = rosetta.core.scoring._core_scoring_.ScoreType.hb...
|
|
|
hbond_lr_bb = rosetta.core.scoring._core_scoring_.ScoreType.hb...
|
|
|
hbond_lr_bb_sc = rosetta.core.scoring._core_scoring_.ScoreType...
|
|
|
hbond_res_data = rosetta.core.scoring._core_scoring_.min_singl...
|
|
|
hbond_respair_data = rosetta.core.scoring._core_scoring_.min_p...
|
|
|
hbond_sc = rosetta.core.scoring._core_scoring_.ScoreType.hbond_sc
|
|
|
hbond_sr_bb = rosetta.core.scoring._core_scoring_.ScoreType.hb...
|
|
|
hbond_sr_bb_sc = rosetta.core.scoring._core_scoring_.ScoreType...
|
|
|
holes = rosetta.core.scoring._core_scoring_.ScoreType.holes
|
|
|
holes_decoy = rosetta.core.scoring._core_scoring_.ScoreType.ho...
|
|
|
holes_min = rosetta.core.scoring._core_scoring_.ScoreType.hole...
|
|
|
holes_min_mean = rosetta.core.scoring._core_scoring_.ScoreType...
|
|
|
holes_resl = rosetta.core.scoring._core_scoring_.ScoreType.hol...
|
|
|
hpatch = rosetta.core.scoring._core_scoring_.ScoreType.hpatch
|
|
|
hs_pair = rosetta.core.scoring._core_scoring_.ScoreType.hs_pair
|
|
|
hybrid_vdw = rosetta.core.scoring._core_scoring_.ScoreType.hyb...
|
|
|
iCode = rosetta.protocols.loops._protocols_loops_.LoopConfigur...
|
|
|
interchain_contact = rosetta.core.scoring._core_scoring_.Score...
|
|
|
interchain_env = rosetta.core.scoring._core_scoring_.ScoreType...
|
|
|
interchain_pair = rosetta.core.scoring._core_scoring_.ScoreTyp...
|
|
|
interchain_vdw = rosetta.core.scoring._core_scoring_.ScoreType...
|
|
|
interface_dd_pair = rosetta.core.scoring._core_scoring_.ScoreT...
|
|
|
intermol = rosetta.core.scoring._core_scoring_.ScoreType.intermol
|
|
|
k = 'is_string_numeric' |
|
|
last_DNA_aa = rosetta.core.chemical._core_chemical_.AA.last_DN...
|
|
|
last_D_aa = rosetta.core.chemical._core_chemical_.AA.last_D_aa
|
|
|
last_beta3_aa = rosetta.core.chemical._core_chemical_.AA.last_...
|
|
|
linear_chainbreak = rosetta.core.scoring._core_scoring_.ScoreT...
|
|
|
lk_PolarNonPolar_pair_nblist = rosetta.core.scoring._core_scor...
|
|
|
lk_ball = rosetta.core.scoring._core_scoring_.ScoreType.lk_ball
|
|
|
lk_ball_iso = rosetta.core.scoring._core_scoring_.ScoreType.lk...
|
|
|
lk_ball_wtd = rosetta.core.scoring._core_scoring_.ScoreType.lk...
|
|
|
lk_costheta = rosetta.core.scoring._core_scoring_.ScoreType.lk...
|
|
|
lk_hack = rosetta.core.scoring._core_scoring_.ScoreType.lk_hack
|
|
|
lk_nonpolar = rosetta.core.scoring._core_scoring_.ScoreType.lk...
|
|
|
lk_nonpolar_intra_RNA = rosetta.core.scoring._core_scoring_.Sc...
|
|
|
lk_polar = rosetta.core.scoring._core_scoring_.ScoreType.lk_polar
|
|
|
lk_polar_intra_RNA = rosetta.core.scoring._core_scoring_.Score...
|
|
|
lkb_res_data = rosetta.core.scoring._core_scoring_.min_single_...
|
|
|
lkb_respair_data = rosetta.core.scoring._core_scoring_.min_pai...
|
|
|
logger = logging.getLogger("rosetta")
|
|
|
loop_close = rosetta.core.scoring._core_scoring_.ScoreType.loo...
|
|
|
metalhash_constraint = rosetta.core.scoring._core_scoring_.Sco...
|
|
|
mg_ref = rosetta.core.scoring._core_scoring_.ScoreType.mg_ref
|
|
|
missing_res = rosetta.core.scoring._core_scoring_.ScoreType.mi...
|
|
|
mm_bend = rosetta.core.scoring._core_scoring_.ScoreType.mm_bend
|
|
|
mm_lj_inter_atr = rosetta.core.scoring._core_scoring_.ScoreTyp...
|
|
|
mm_lj_inter_rep = rosetta.core.scoring._core_scoring_.ScoreTyp...
|
|
|
mm_lj_intra_atr = rosetta.core.scoring._core_scoring_.ScoreTyp...
|
|
|
mm_lj_intra_rep = rosetta.core.scoring._core_scoring_.ScoreTyp...
|
|
|
mm_stretch = rosetta.core.scoring._core_scoring_.ScoreType.mm_...
|
|
|
mm_twist = rosetta.core.scoring._core_scoring_.ScoreType.mm_twist
|
|
|
n_ci_2b_score_types = rosetta.core.scoring._core_scoring_.Scor...
|
|
|
n_min_pair_data = rosetta.core.scoring._core_scoring_.min_pair...
|
|
|
n_min_single_data = rosetta.core.scoring._core_scoring_.min_si...
|
|
|
n_ppo_torsion_bins = rosetta.core.conformation._core_conformat...
|
|
|
n_score_types = rosetta.core.scoring._core_scoring_.ScoreType....
|
|
|
n_shortranged_2b_score_types = rosetta.core.scoring._core_scor...
|
|
|
na_ade = rosetta.core.chemical._core_chemical_.AA.na_ade
|
|
|
na_cyt = rosetta.core.chemical._core_chemical_.AA.na_cyt
|
|
|
na_gua = rosetta.core.chemical._core_chemical_.AA.na_gua
|
|
|
na_rad = rosetta.core.chemical._core_chemical_.AA.na_rad
|
|
|
na_rcy = rosetta.core.chemical._core_chemical_.AA.na_rcy
|
|
|
na_rgu = rosetta.core.chemical._core_chemical_.AA.na_rgu
|
|
|
na_thy = rosetta.core.chemical._core_chemical_.AA.na_thy
|
|
|
na_ura = rosetta.core.chemical._core_chemical_.AA.na_ura
|
|
|
natbias_hh = rosetta.core.scoring._core_scoring_.ScoreType.nat...
|
|
|
natbias_hs = rosetta.core.scoring._core_scoring_.ScoreType.nat...
|
|
|
natbias_ss = rosetta.core.scoring._core_scoring_.ScoreType.nat...
|
|
|
natbias_stwist = rosetta.core.scoring._core_scoring_.ScoreType...
|
|
|
neigh_count = rosetta.core.scoring._core_scoring_.ScoreType.ne...
|
|
|
neigh_vect = rosetta.core.scoring._core_scoring_.ScoreType.nei...
|
|
|
neigh_vect_raw = rosetta.core.scoring._core_scoring_.ScoreType...
|
|
|
nmer_pssm = rosetta.core.scoring._core_scoring_.ScoreType.nmer...
|
|
|
nmer_ref = rosetta.core.scoring._core_scoring_.ScoreType.nmer_ref
|
|
|
nmer_svm = rosetta.core.scoring._core_scoring_.ScoreType.nmer_svm
|
|
|
no_stats = rosetta.protocols.moves._protocols_moves_.StatsType...
|
|
|
num_aa_types = rosetta.core.chemical._core_chemical_.AA.num_aa...
|
|
|
num_canonical_aas = rosetta.core.chemical._core_chemical_.AA.n...
|
|
|
num_context_graph_types = rosetta.core.scoring._core_scoring_....
|
|
|
number_of_configuration_keywords = rosetta.protocols.loops._pr...
|
|
|
number_of_residue_identifiers = rosetta.protocols.loops._proto...
|
|
|
occ_sol_exact = rosetta.core.scoring._core_scoring_.ScoreType....
|
|
|
occ_sol_fitted = rosetta.core.scoring._core_scoring_.ScoreType...
|
|
|
occ_sol_fitted_onebody = rosetta.core.scoring._core_scoring_.S...
|
|
|
omega = rosetta.core.scoring._core_scoring_.ScoreType.omega
|
|
|
omega2b_offset = rosetta.core.scoring._core_scoring_.ScoreType...
|
|
|
orbitals_hpol_bb = rosetta.core.scoring._core_scoring_.ScoreTy...
|
|
|
other_pose = rosetta.core.scoring._core_scoring_.ScoreType.oth...
|
|
|
overlap_chainbreak = rosetta.core.scoring._core_scoring_.Score...
|
|
|
p_aa = rosetta.core.scoring._core_scoring_.ScoreType.p_aa
|
|
|
p_aa_pp = rosetta.core.scoring._core_scoring_.ScoreType.p_aa_pp
|
|
|
p_aa_pp_offset = rosetta.core.scoring._core_scoring_.ScoreType...
|
|
|
pack_stat = rosetta.core.scoring._core_scoring_.ScoreType.pack...
|
|
|
pair = rosetta.core.scoring._core_scoring_.ScoreType.pair
|
|
|
patterson_cc = rosetta.core.scoring._core_scoring_.ScoreType.p...
|
|
|
pci_cation_pi = rosetta.core.scoring._core_scoring_.ScoreType....
|
|
|
pci_hbond = rosetta.core.scoring._core_scoring_.ScoreType.pci_...
|
|
|
pci_pi_pi = rosetta.core.scoring._core_scoring_.ScoreType.pci_...
|
|
|
pci_salt_bridge = rosetta.core.scoring._core_scoring_.ScoreTyp...
|
|
|
pcs = rosetta.core.scoring._core_scoring_.ScoreType.pcs
|
|
|
pcs2 = rosetta.core.scoring._core_scoring_.ScoreType.pcs2
|
|
|
pcsTs1 = rosetta.core.scoring._core_scoring_.ScoreType.pcsTs1
|
|
|
pcsTs2 = rosetta.core.scoring._core_scoring_.ScoreType.pcsTs2
|
|
|
pcsTs3 = rosetta.core.scoring._core_scoring_.ScoreType.pcsTs3
|
|
|
pcsTs4 = rosetta.core.scoring._core_scoring_.ScoreType.pcsTs4
|
|
|
pddf_score = rosetta.core.scoring._core_scoring_.ScoreType.pdd...
|
|
|
peptide_bond = rosetta.core.scoring._core_scoring_.ScoreType.p...
|
|
|
pocket_constraint = rosetta.core.scoring._core_scoring_.ScoreT...
|
|
|
ppo_torbin_A = rosetta.core.conformation._core_conformation_.p...
|
|
|
ppo_torbin_B = rosetta.core.conformation._core_conformation_.p...
|
|
|
ppo_torbin_E = rosetta.core.conformation._core_conformation_.p...
|
|
|
ppo_torbin_G = rosetta.core.conformation._core_conformation_.p...
|
|
|
ppo_torbin_U = rosetta.core.conformation._core_conformation_.p...
|
|
|
ppo_torbin_X = rosetta.core.conformation._core_conformation_.p...
|
|
|
ppo_torbin_a = rosetta.core.conformation._core_conformation_.p...
|
|
|
ppo_torbin_b = rosetta.core.conformation._core_conformation_.p...
|
|
|
ppo_torbin_e = rosetta.core.conformation._core_conformation_.p...
|
|
|
ppo_torbin_g = rosetta.core.conformation._core_conformation_.p...
|
|
|
pro_close = rosetta.core.scoring._core_scoring_.ScoreType.pro_...
|
|
|
protein_torsion_end = rosetta.core.scoring._core_scoring_.Prot...
|
|
|
python = rosetta.core.scoring._core_scoring_.ScoreType.python
|
|
|
q = rosetta.core.chemical._core_chemical_.CPParameter.q
|
|
|
rama = rosetta.core.scoring._core_scoring_.ScoreType.rama
|
|
|
rama2b = rosetta.core.scoring._core_scoring_.ScoreType.rama2b
|
|
|
rama2b_offset = rosetta.core.scoring._core_scoring_.ScoreType....
|
|
|
rdc = rosetta.core.scoring._core_scoring_.ScoreType.rdc
|
|
|
rdc_rohl = rosetta.core.scoring._core_scoring_.ScoreType.rdc_rohl
|
|
|
rdc_segments = rosetta.core.scoring._core_scoring_.ScoreType.r...
|
|
|
ref = rosetta.core.scoring._core_scoring_.ScoreType.ref
|
|
|
ref_nc = rosetta.core.scoring._core_scoring_.ScoreType.ref_nc
|
|
|
resSeq = rosetta.protocols.loops._protocols_loops_.LoopConfigu...
|
|
|
res_type_constraint = rosetta.core.scoring._core_scoring_.Scor...
|
|
|
res_type_linking_constraint = rosetta.core.scoring._core_scori...
|
|
|
rg = rosetta.core.scoring._core_scoring_.ScoreType.rg
|
|
|
rg_local = rosetta.core.scoring._core_scoring_.ScoreType.rg_local
|
|
|
rms = rosetta.core.scoring._core_scoring_.ScoreType.rms
|
|
|
rna_backbone_backbone = rosetta.core.scoring._core_scoring_.Sc...
|
|
|
rna_base_axis = rosetta.core.scoring._core_scoring_.ScoreType....
|
|
|
rna_base_axis_pairwise = rosetta.core.scoring._core_scoring_.S...
|
|
|
rna_base_backbone = rosetta.core.scoring._core_scoring_.ScoreT...
|
|
|
rna_base_pair = rosetta.core.scoring._core_scoring_.ScoreType....
|
|
|
rna_base_pair_pairwise = rosetta.core.scoring._core_scoring_.S...
|
|
|
rna_base_stack = rosetta.core.scoring._core_scoring_.ScoreType...
|
|
|
rna_base_stack_axis = rosetta.core.scoring._core_scoring_.Scor...
|
|
|
rna_base_stack_axis_pairwise = rosetta.core.scoring._core_scor...
|
|
|
rna_base_stack_pairwise = rosetta.core.scoring._core_scoring_....
|
|
|
rna_base_stagger = rosetta.core.scoring._core_scoring_.ScoreTy...
|
|
|
rna_base_stagger_pairwise = rosetta.core.scoring._core_scoring...
|
|
|
rna_bond_geometry = rosetta.core.scoring._core_scoring_.ScoreT...
|
|
|
rna_bulge = rosetta.core.scoring._core_scoring_.ScoreType.rna_...
|
|
|
rna_chem_map = rosetta.core.scoring._core_scoring_.ScoreType.r...
|
|
|
rna_chem_map_lores = rosetta.core.scoring._core_scoring_.Score...
|
|
|
rna_chem_shift = rosetta.core.scoring._core_scoring_.ScoreType...
|
|
|
rna_data_backbone = rosetta.core.scoring._core_scoring_.ScoreT...
|
|
|
rna_data_base = rosetta.core.scoring._core_scoring_.ScoreType....
|
|
|
rna_fa_atr_base = rosetta.core.scoring._core_scoring_.ScoreTyp...
|
|
|
rna_fa_rep_base = rosetta.core.scoring._core_scoring_.ScoreTyp...
|
|
|
rna_jr_suite = rosetta.core.scoring._core_scoring_.ScoreType.r...
|
|
|
rna_mg = rosetta.core.scoring._core_scoring_.ScoreType.rna_mg
|
|
|
rna_mg_indirect = rosetta.core.scoring._core_scoring_.ScoreTyp...
|
|
|
rna_mg_rep = rosetta.core.scoring._core_scoring_.ScoreType.rna...
|
|
|
rna_repulsive = rosetta.core.scoring._core_scoring_.ScoreType....
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rna_rg = rosetta.core.scoring._core_scoring_.ScoreType.rna_rg
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rna_sugar_close = rosetta.core.scoring._core_scoring_.ScoreTyp...
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rna_suite = rosetta.core.scoring._core_scoring_.ScoreType.rna_...
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rna_torsion = rosetta.core.scoring._core_scoring_.ScoreType.rn...
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rna_torsion_sc = rosetta.core.scoring._core_scoring_.ScoreType...
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rna_vdw = rosetta.core.scoring._core_scoring_.ScoreType.rna_vdw
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rsigma = rosetta.core.scoring._core_scoring_.ScoreType.rsigma
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sa = rosetta.core.scoring._core_scoring_.ScoreType.sa
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saxs_cen_score = rosetta.core.scoring._core_scoring_.ScoreType...
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saxs_fa_score = rosetta.core.scoring._core_scoring_.ScoreType....
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saxs_score = rosetta.core.scoring._core_scoring_.ScoreType.sax...
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seqdep_ref = rosetta.core.scoring._core_scoring_.ScoreType.seq...
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sheet = rosetta.core.scoring._core_scoring_.ScoreType.sheet
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site_constraint = rosetta.core.scoring._core_scoring_.ScoreTyp...
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skip_rate = rosetta.protocols.loops._protocols_loops_.LoopConf...
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special_rot = rosetta.core.scoring._core_scoring_.ScoreType.sp...
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|
ss_pair = rosetta.core.scoring._core_scoring_.ScoreType.ss_pair
|
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stack_elec = rosetta.core.scoring._core_scoring_.ScoreType.sta...
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stack_elec_base_base = rosetta.core.scoring._core_scoring_.Sco...
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stack_elec_base_bb = rosetta.core.scoring._core_scoring_.Score...
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start = rosetta.protocols.loops._protocols_loops_.ResidueIdent...
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stop = rosetta.protocols.loops._protocols_loops_.ResidueIdenti...
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|
|
suck = rosetta.core.scoring._core_scoring_.ScoreType.suck
|
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sugar_bb = rosetta.core.scoring._core_scoring_.ScoreType.sugar_bb
|
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suiteness_bonus = rosetta.core.scoring._core_scoring_.ScoreTyp...
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surface = rosetta.core.scoring._core_scoring_.ScoreType.surface
|
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symE_bonus = rosetta.core.scoring._core_scoring_.ScoreType.sym...
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sym_lig = rosetta.core.scoring._core_scoring_.ScoreType.sym_lig
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ten_A_neighbor_graph = rosetta.core.scoring._core_scoring_.Con...
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|
total_score = rosetta.core.scoring._core_scoring_.ScoreType.to...
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twelve_A_neighbor_graph = rosetta.core.scoring._core_scoring_....
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|
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unfolded = rosetta.core.scoring._core_scoring_.ScoreType.unfolded
|
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use_pose_numbering = rosetta.protocols.loops._protocols_loops_...
|
|
|
vall_lb = rosetta.core.scoring._core_scoring_.ScoreType.vall_lb
|
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vdw = rosetta.core.scoring._core_scoring_.ScoreType.vdw
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xtal_ml = rosetta.core.scoring._core_scoring_.ScoreType.xtal_ml
|
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xtal_rfree = rosetta.core.scoring._core_scoring_.ScoreType.xta...
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|
xtal_rwork = rosetta.core.scoring._core_scoring_.ScoreType.xta...
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yhh_planarity = rosetta.core.scoring._core_scoring_.ScoreType....
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