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M
m1_b1_Ktheta()
(in
BranchParam1
)
MembraneJumpAP
(in
rosetta.protocols.jumping._protocols_jumping_
)
MOLECULE
(in
CompoundToken
)
m1_b1_theta0()
(in
BranchParam1
)
MembraneJumpCAP
(in
rosetta.protocols.jumping._protocols_jumping_
)
MOLECULE
(in
HeaderInformation
)
m1_b2_Ktheta()
(in
BranchParam2
)
MembraneLipo
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MolFileIOAtom
(in
rosetta.core.chemical.sdf._core_chemical_sdf_
)
m1_b2_theta0()
(in
BranchParam2
)
MembraneLipoAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MolFileIOAtomAP
(in
rosetta.core.chemical.sdf._core_chemical_sdf_
)
m1_m2_Ktheta()
(in
BranchParam1
)
MembraneLipoCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MolFileIOAtomCAP
(in
rosetta.core.chemical.sdf._core_chemical_sdf_
)
m1_m2_theta0()
(in
BranchParam1
)
MembraneLipoCreator
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MolFileIOBond
(in
rosetta.core.chemical.sdf._core_chemical_sdf_
)
m2_b1_Ktheta()
(in
BranchParam1
)
MembraneLipoCreatorAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MolFileIOBondAP
(in
rosetta.core.chemical.sdf._core_chemical_sdf_
)
m2_b1_theta0()
(in
BranchParam1
)
MembraneLipoCreatorCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MolFileIOBondCAP
(in
rosetta.core.chemical.sdf._core_chemical_sdf_
)
m2_b2_Ktheta()
(in
BranchParam2
)
MembraneNormalPerturbationMover
(in
rosetta.protocols.rigid._protocols_rigid_
)
MolFileIOMolecule
(in
rosetta.core.chemical.sdf._core_chemical_sdf_
)
m2_b2_theta0()
(in
BranchParam2
)
MembraneNormalPerturbationMoverAP
(in
rosetta.protocols.rigid._protocols_rigid_
)
MolFileIOMoleculeAP
(in
rosetta.core.chemical.sdf._core_chemical_sdf_
)
maca
(in
atomitem
)
MembraneNormalPerturbationMoverCAP
(in
rosetta.protocols.rigid._protocols_rigid_
)
MolFileIOMoleculeCAP
(in
rosetta.core.chemical.sdf._core_chemical_sdf_
)
maca
(in
rosetta.core.scoring.rna.chemical_shift._core_scoring_rna_chemical_shift_
)
MembranePositionFromTopologyMover
(in
rosetta.protocols.membrane._protocols_membrane_
)
MolFileIOReader
(in
rosetta.core.chemical.sdf._core_chemical_sdf_
)
maca
(in
rosetta.core.scoring.rna.chemical_shift
)
MembranePositionFromTopologyMoverAP
(in
rosetta.protocols.membrane._protocols_membrane_
)
MolFileIOReaderAP
(in
rosetta.core.chemical.sdf._core_chemical_sdf_
)
magentic_anisotropy_q_coeff()
(in
RNA_CS_residue_parameters
)
MembranePositionFromTopologyMoverCAP
(in
rosetta.protocols.membrane._protocols_membrane_
)
MolFileIOReaderCAP
(in
rosetta.core.chemical.sdf._core_chemical_sdf_
)
magentic_anisotropy_r_coeff()
(in
RNA_CS_residue_parameters
)
MembranePositionFromTopologyMoverCreator
(in
rosetta.protocols.membrane._protocols_membrane_
)
moltenres_2_resid()
(in
FixbbRotamerSets
)
magnetic_anisotropy_effect()
(in
rosetta.core.scoring.rna.chemical_shift._core_scoring_rna_chemical_shift_
)
MembranePositionFromTopologyMoverCreatorAP
(in
rosetta.protocols.membrane._protocols_membrane_
)
moltenres_2_resid()
(in
RotamerSets
)
magnitude
(in
Quaternion_Real
)
MembranePositionFromTopologyMoverCreatorCAP
(in
rosetta.protocols.membrane._protocols_membrane_
)
moltenres_2_resid()
(in
RotamerSetsBase
)
magnitude
(in
Quaternion_double
)
MembranePotential
(in
rosetta.core.scoring._core_scoring_
)
moltenres_2_resid()
(in
RotamerSubsets
)
magnitude
(in
Quaternion_float
)
MembranePotentialAP
(in
rosetta.core.scoring._core_scoring_
)
moltenres_2_resid()
(in
FlexbbRotamerSets
)
magnitude
(in
xyzTriple_Real
)
MembranePotentialCAP
(in
rosetta.core.scoring._core_scoring_
)
moltenres_2_resid_vector()
(in
FixbbRotamerSets
)
magnitude
(in
xyzTriple_SSize
)
MembraneTopology
(in
rosetta.core.scoring._core_scoring_
)
moltenres_2_resid_vector()
(in
RotamerSets
)
magnitude
(in
xyzTriple_Size
)
MembraneTopology
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
moltenres_atomtree_collection()
(in
AtomTreeCollection
)
magnitude
(in
xyzTriple_double
)
MembraneTopology_from_pose()
(in
rosetta.core.scoring._core_scoring_
)
moltenres_for_rotamer()
(in
FixbbRotamerSets
)
magnitude
(in
xyzTriple_float
)
MembraneTopology_from_pose()
(in
Fa_MbenvEnergy
)
moltenres_for_rotamer()
(in
RotamerSets
)
magnitude
(in
xyzVector_Real
)
MembraneTopology_from_pose()
(in
Fa_MbsolvEnergy
)
moltenres_for_rotamer()
(in
RotamerSetsBase
)
magnitude
(in
xyzVector_SSize
)
MembraneTopology_from_pose()
(in
MembraneCbetaEnergy
)
moltenres_for_rotamer()
(in
RotamerSubsets
)
magnitude
(in
xyzVector_Size
)
MembraneTopology_from_pose()
(in
MembraneCenPairEnergy
)
moltenres_for_rotamer()
(in
FlexbbRotamerSets
)
magnitude
(in
xyzVector_double
)
MembraneTopology_from_pose()
(in
MembraneEnvEnergy
)
moltenres_for_sample_rot()
(in
ContinuousRotamerSets
)
magnitude
(in
xyzVector_float
)
MembraneTopologyAP
(in
rosetta.core.scoring._core_scoring_
)
moltenres_part_of_flexsegment()
(in
FlexbbRotamerSets
)
magnitude()
(in
StructPerturberCM
)
MembraneTopologyAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
moltenres_rotid_2_rotid()
(in
FixbbRotamerSets
)
magnitude_error
(in
Quaternion_Real
)
MembraneTopologyCAP
(in
rosetta.core.scoring._core_scoring_
)
moltenres_rotid_2_rotid()
(in
RotamerSets
)
magnitude_error
(in
Quaternion_double
)
MembraneTopologyCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
moltenres_rotid_2_rotid()
(in
RotamerSetsBase
)
magnitude_error
(in
Quaternion_float
)
MembraneTopologyClaimer
(in
rosetta.protocols.topology_broker._protocols_topology_broker_'
)
moltenres_rotid_2_rotid()
(in
RotamerSubsets
)
magnitude_rotation()
(in
RigidBodyMotionMover
)
MembraneTopologyClaimerAP
(in
rosetta.protocols.topology_broker._protocols_topology_broker_'
)
moltenres_rotid_2_rotid()
(in
FlexbbRotamerSets
)
magnitude_squared
(in
Quaternion_Real
)
MembraneTopologyClaimerCAP
(in
rosetta.protocols.topology_broker._protocols_topology_broker_'
)
moltenresid_2_resid()
(in
ContinuousRotamerSets
)
magnitude_squared
(in
Quaternion_double
)
MembraneTopologyCreator
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MolWriter
(in
rosetta.core.chemical.sdf._core_chemical_sdf_
)
magnitude_squared
(in
Quaternion_float
)
MembraneTopologyCreatorAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MolWriterAP
(in
rosetta.core.chemical.sdf._core_chemical_sdf_
)
magnitude_squared
(in
xyzTriple_Real
)
MembraneTopologyCreatorCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MolWriterCAP
(in
rosetta.core.chemical.sdf._core_chemical_sdf_
)
magnitude_squared
(in
xyzTriple_SSize
)
memory_usage_in_bytes()
(in
SingleResidueDunbrackLibrary
)
monte_carlo
(in
rosetta.protocols.stepwise
)
magnitude_squared
(in
xyzTriple_Size
)
memory_usage_in_bytes()
(in
SingleResiduePeptoidLibrary
)
monte_carlo()
(in
MetropolisHastingsMover
)
magnitude_squared
(in
xyzTriple_double
)
memory_use()
(in
ConstraintedOptimizationWeightFunc
)
monte_carlo()
(in
TemperatureController
)
magnitude_squared
(in
xyzTriple_float
)
memory_use()
(in
DDGBindOptEData
)
MonteCarlo
(in
rosetta.protocols.moves._protocols_moves_
)
magnitude_squared
(in
xyzVector_Real
)
memory_use()
(in
DDGMutationOptEData
)
MonteCarloAP
(in
rosetta.protocols.moves._protocols_moves_
)
magnitude_squared
(in
xyzVector_SSize
)
memory_use()
(in
DGBindOptEData
)
MonteCarloCAP
(in
rosetta.protocols.moves._protocols_moves_
)
magnitude_squared
(in
xyzVector_Size
)
memory_use()
(in
NestedEnergyTermDDGMutationOptEData
)
MonteCarloExceptionConverge
(in
rosetta.protocols.moves._protocols_moves_
)
magnitude_squared
(in
xyzVector_double
)
memory_use()
(in
NestedEnergyTermPNatAAOptEPositionData
)
MonteCarloExceptionConvergeAP
(in
rosetta.protocols.moves._protocols_moves_
)
magnitude_squared
(in
xyzVector_float
)
memory_use()
(in
OptEPositionData
)
MonteCarloExceptionConvergeCAP
(in
rosetta.protocols.moves._protocols_moves_
)
magnitude_squared_error
(in
Quaternion_Real
)
memory_use()
(in
PNatAAOptEPositionData
)
MonteCarloLoader
(in
rosetta.protocols.jd2.parser._protocols_jd2_parser_
)
magnitude_squared_error
(in
Quaternion_double
)
memory_use()
(in
PNatLigPoseOptEData
)
MonteCarloLoaderAP
(in
rosetta.protocols.jd2.parser._protocols_jd2_parser_
)
magnitude_squared_error
(in
Quaternion_float
)
memory_use()
(in
PNatRotOptEPositionData
)
MonteCarloLoaderCAP
(in
rosetta.protocols.jd2.parser._protocols_jd2_parser_
)
magnitude_translation()
(in
RigidBodyMotionMover
)
memory_use()
(in
PNatStructureOptEData
)
MonteCarloLoaderCreator
(in
rosetta.protocols.jd2.parser._protocols_jd2_parser_
)
main_chain_torsion_set()
(in
StepWiseProteinCCD_Closer
)
memory_use()
(in
PSSMOptEPositionData
)
MonteCarloLoaderCreatorAP
(in
rosetta.protocols.jd2.parser._protocols_jd2_parser_
)
main_chain_torsion_set_lists()
(in
StepWiseProteinBackboneSampler
)
MemTracer
(in
rosetta.basic._basic_
)
MonteCarloLoaderCreatorCAP
(in
rosetta.protocols.jd2.parser._protocols_jd2_parser_
)
main_chain_torsion_set_lists()
(in
StepWiseProteinKIC_LoopBridger
)
MemTracerAP
(in
rosetta.basic._basic_
)
MonteCarloRecover
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
main_chain_torsion_set_lists_real()
(in
StepWiseProteinBackboneSampler
)
MemTracerCAP
(in
rosetta.basic._basic_
)
MonteCarloRecoverAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
main_chain_torsion_set_save()
(in
StepWiseProteinCCD_Closer
)
Menv
(in
rosetta
)
MonteCarloRecoverCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
main_chain_torsion_sets()
(in
StepWiseProteinCCD_MultiPoseCloser
)
Menv
(in
rosetta.core.scoring
)
MonteCarloRecoverCreator
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
main_plain_mover()
(in
rosetta.protocols.jobdist._protocols_jobdist_
)
Menv
(in
rosetta.core.scoring._core_scoring_
)
MonteCarloRecoverCreatorAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
main_plain_pdb_mover()
(in
rosetta.protocols.jobdist._protocols_jobdist_
)
Menv
(in
ScoreType
)
MonteCarloRecoverCreatorCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
mainchain_atom()
(in
ResidueType
)
Menv_non_helix
(in
rosetta
)
MonteCarloReset
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
mainchain_atom()
(in
Residue
)
Menv_non_helix
(in
rosetta.core.scoring
)
MonteCarloResetAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
mainchain_atoms()
(in
ResidueType
)
Menv_non_helix
(in
rosetta.core.scoring._core_scoring_
)
MonteCarloResetCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
mainchain_atoms()
(in
Residue
)
Menv_non_helix
(in
ScoreType
)
MonteCarloResetCreator
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
mainchain_glycosidic_bond_acceptor()
(in
CarbohydrateInfo
)
Menv_penalties()
(in
MembranePotential
)
MonteCarloResetCreatorAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
mainchain_torsion()
(in
Residue
)
Menv_smooth
(in
rosetta
)
MonteCarloResetCreatorCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
mainchain_torsion()
(in
RNA_SilentStruct
)
Menv_smooth
(in
rosetta.core.scoring
)
MonteCarloTest
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
mainchain_torsions()
(in
Residue
)
Menv_smooth
(in
rosetta.core.scoring._core_scoring_
)
MonteCarloTestAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
mainchain_torsions()
(in
RNA_SilentStruct
)
Menv_smooth
(in
ScoreType
)
MonteCarloTestCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MainChainTorsionSet
(in
rosetta.protocols.stepwise.modeler.protein._protocols_stepwise_modeler_protein_
)
Menv_termini
(in
rosetta
)
MonteCarloTestCreator
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MainChainTorsionSetAP
(in
rosetta.protocols.stepwise.modeler.protein._protocols_stepwise_modeler_protein_
)
Menv_termini
(in
rosetta.core.scoring
)
MonteCarloTestCreatorAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MainChainTorsionSetCAP
(in
rosetta.protocols.stepwise.modeler.protein._protocols_stepwise_modeler_protein_
)
Menv_termini
(in
rosetta.core.scoring._core_scoring_
)
MonteCarloTestCreatorCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
make()
(in
MakeABEGO_SS_Score
)
Menv_termini
(in
ScoreType
)
MonteCarloUtil
(in
rosetta.protocols.moves._protocols_moves_
)
make()
(in
MakeAmbigCSScore
)
Menv_tm_proj
(in
rosetta
)
MonteCarloUtilAP
(in
rosetta.protocols.moves._protocols_moves_
)
make()
(in
MakeAtomPairConstraintsScore
)
Menv_tm_proj
(in
rosetta.core.scoring
)
MonteCarloUtilCAP
(in
rosetta.protocols.moves._protocols_moves_
)
make()
(in
MakeBFactor
)
Menv_tm_proj
(in
rosetta.core.scoring._core_scoring_
)
more_precise_base_pair_classification()
(in
RNA_LowResolutionPotential
)
make()
(in
MakeCSScore
)
Menv_tm_proj
(in
ScoreType
)
most_probable_bin()
(in
ABEGO_SS_Config
)
make()
(in
MakeConstScore
)
merge()
(in
Frame
)
motif
(in
rosetta.core.pose
)
make()
(in
MakeDihedralConstraintsScore
)
merge()
(in
ScoreFunction
)
motif
(in
rosetta.core.scoring
)
make()
(in
MakeDisulfideDistance
)
merge()
(in
StrandPairing
)
Motif
(in
rosetta.protocols.motifs._protocols_motifs_
)
make()
(in
MakeDisulfideIdentity
)
merge()
(in
StrandPairingSet
)
motif2scaffold_data
(in
rosetta.protocols.motif_grafting.movers._protocols_motif_grafting_movers_
)
make()
(in
MakeFragmentAllAtomCrmsd
)
merge()
(in
KDPointList
)
motif2scaffold_dataAP
(in
rosetta.protocols.motif_grafting.movers._protocols_motif_grafting_movers_
)
make()
(in
MakeFragmentChunkCrms
)
merge()
(in
AlignmentCluster
)
motif2scaffold_dataCAP
(in
rosetta.protocols.motif_grafting.movers._protocols_motif_grafting_movers_
)
make()
(in
MakeFragmentCrmsd
)
merge()
(in
rosetta.protocols.forge.methods._protocols_forge_methods_
)
motif2scaffold_indexes
(in
rosetta.protocols.motif_grafting.movers._protocols_motif_grafting_movers_
)
make()
(in
MakeFragmentCrmsdResDepth
)
merge()
(in
LoopHashLibrary
)
motif2scaffold_indexesAP
(in
rosetta.protocols.motif_grafting.movers._protocols_motif_grafting_movers_
)
make()
(in
MakeFragmentDME
)
merge()
(in
WorkUnitList
)
motif2scaffold_indexesCAP
(in
rosetta.protocols.motif_grafting.movers._protocols_motif_grafting_movers_
)
make()
(in
MakeFragmentScoringMethod
)
merge_bbdb()
(in
LoopHashLibrary
)
motif_bin_hash()
(in
ResPairMotifMetaBinner
)
make()
(in
MakeGunnCostScore
)
merge_constraints_from_cmdline()
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
motif_bin_label()
(in
ResPairMotifMetaBinner
)
make()
(in
MakeHydrophobicityProfileSimilarity
)
merge_constraints_from_cmdline_to_pose()
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
motif_grafting
(in
rosetta.protocols
)
make()
(in
MakeHydrophobicitySimilarity
)
merge_constraints_from_cmdline_to_scorefxn()
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
motif_hash()
(in
MotifHashRigidScore
)
make()
(in
MakeInterbondAngleScore
)
merge_fa_constraints_from_cmdline()
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
motif_library()
(in
LigandMotifSearch
)
make()
(in
MakeJCoupling
)
merge_fa_constraints_from_cmdline_to_pose()
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
motif_library()
(in
MotifSearch
)
make()
(in
MakeLAMBEGO_Similarity
)
merge_fa_constraints_from_cmdline_to_scorefxn()
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
motif_set_names()
(in
MotifHashManager
)
make()
(in
MakeMidPhiOut
)
merge_frags()
(in
rosetta.core.fragment._core_fragment_
)
MotifAP
(in
rosetta.protocols.motifs._protocols_motifs_
)
make()
(in
MakeMidPsiOut
)
merge_in_other_pose()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
MotifCAP
(in
rosetta.protocols.motifs._protocols_motifs_
)
make()
(in
MakePCS_FragDistance
)
merge_in_other_pose_by_bond()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
motifcop()
(in
MotifHit
)
make()
(in
MakePartialSecondarySimilarity
)
merge_in_other_pose_by_jump()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
MotifDnaPacker
(in
rosetta.protocols.motifs._protocols_motifs_
)
make()
(in
MakePhi
)
merge_two_poses()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
MotifDnaPackerAP
(in
rosetta.protocols.motifs._protocols_motifs_
)
make()
(in
MakePhiPsiRmsd
)
merge_two_poses_using_full_model_info()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
MotifDnaPackerCAP
(in
rosetta.protocols.motifs._protocols_motifs_
)
make()
(in
MakePhiPsiSquareWell
)
merge_vectors()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
MotifDnaPackerCreator
(in
rosetta.protocols.motifs._protocols_motifs_
)
make()
(in
MakeProfileScore
)
mergeable()
(in
StrandPairing
)
MotifDnaPackerCreatorAP
(in
rosetta.protocols.motifs._protocols_motifs_
)
make()
(in
MakeProfileScoreBlosum62
)
message_listening
(in
rosetta.basic
)
MotifDnaPackerCreatorCAP
(in
rosetta.protocols.motifs._protocols_motifs_
)
make()
(in
MakeProfileScoreDistWeight
)
MessageListener
(in
rosetta.basic.message_listening._basic_message_listening_
)
MotifGraftCreator
(in
rosetta.protocols.motif_grafting.movers._protocols_motif_grafting_movers_
)
make()
(in
MakeProfileScoreL1
)
MessageListenerAP
(in
rosetta.basic.message_listening._basic_message_listening_
)
MotifGraftCreatorAP
(in
rosetta.protocols.motif_grafting.movers._protocols_motif_grafting_movers_
)
make()
(in
MakeProfileScoreStructL1
)
MessageListenerCAP
(in
rosetta.basic.message_listening._basic_message_listening_
)
MotifGraftCreatorCAP
(in
rosetta.protocols.motif_grafting.movers._protocols_motif_grafting_movers_
)
make()
(in
MakeProfileScoreSubMatrix
)
MessageListenerFactory
(in
rosetta.basic.message_listening._basic_message_listening_
)
MotifGraftMover
(in
rosetta.protocols.motif_grafting.movers._protocols_motif_grafting_movers_
)
make()
(in
MakeProlinePhiScore
)
MessageListenerFactoryAP
(in
rosetta.basic.message_listening._basic_message_listening_
)
MotifGraftMoverAP
(in
rosetta.protocols.motif_grafting.movers._protocols_motif_grafting_movers_
)
make()
(in
MakePsi
)
MessageListenerFactoryCAP
(in
rosetta.basic.message_listening._basic_message_listening_
)
MotifGraftMoverCAP
(in
rosetta.protocols.motif_grafting.movers._protocols_motif_grafting_movers_
)
make()
(in
MakeRDCScore
)
meta_begin()
(in
xyzStripeHashWithMeta_T_float_T
)
MotifHash
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
make()
(in
MakeRamaScore
)
meta_end()
(in
xyzStripeHashWithMeta_T_float_T
)
MotifHashAP
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
make()
(in
MakeScoreEValuator
)
METAL
(in
rosetta
)
MotifHashCAP
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
make()
(in
MakeSecondaryIdentity
)
METAL
(in
rosetta.core.chemical
)
MotifHashManager
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
make()
(in
MakeSecondarySimilarity
)
METAL
(in
rosetta.core.chemical._core_chemical_
)
MotifHashManagerAP
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
make()
(in
MakeSequenceIdentity
)
METAL
(in
ResidueProperty
)
MotifHashManagerCAP
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
make()
(in
MakeSolventAccessibility
)
metal_bond_angle_constraint_multiplier()
(in
ImportPoseOptions
)
MotifHashRigidScore
(in
rosetta.protocols.sic_dock.scores._protocols_sic_dock_scores_
)
make()
(in
MakeTalosSSSimilarity
)
metal_bond_dist_constraint_multiplier()
(in
ImportPoseOptions
)
MotifHashRigidScoreAP
(in
rosetta.protocols.sic_dock.scores._protocols_sic_dock_scores_
)
make()
(in
MakeTorsionBinSimilarity
)
metal_bond_LJ_multiplier()
(in
ImportPoseOptions
)
MotifHashRigidScoreCAP
(in
rosetta.protocols.sic_dock.scores._protocols_sic_dock_scores_
)
make_assymetric_movemap()
(in
SymAtomTreeMinimizer
)
metal_interface
(in
rosetta.protocols
)
MotifHit
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
make_asymmetric_pose()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
METALBINDING
(in
rosetta
)
MotifHit
(in
rosetta.protocols.motifs._protocols_motifs_
)
make_atom_map()
(in
rosetta.core.pose._core_pose_
)
METALBINDING
(in
rosetta.core.chemical
)
MotifHitAP
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
make_atr_rep_grid()
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
METALBINDING
(in
rosetta.core.chemical._core_chemical_
)
MotifHitAP
(in
rosetta.protocols.motifs._protocols_motifs_
)
make_atr_rep_grid_without_ligand()
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
METALBINDING
(in
ResidueProperty
)
MotifHitCAP
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
make_atr_rep_grid_without_ligands()
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
metalhash_constraint
(in
ScoreType
)
MotifHitCAP
(in
rosetta.protocols.motifs._protocols_motifs_
)
make_base_pair_aware_fold_tree()
(in
rosetta.protocols.dna._protocols_dna_
)
metalhash_constraint
(in
rosetta.core.scoring._core_scoring_
)
MotifHits
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
MAKE_BASE_PAIR_MOVE
(in
rosetta.basic
)
metalhash_constraint
(in
rosetta.core.scoring
)
MotifHitsAP
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
MAKE_BASE_PAIR_MOVE
(in
rosetta.basic._basic_
)
metalhash_constraint
(in
rosetta
)
MotifHitsCAP
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
MAKE_BASE_PAIR_MOVE
(in
ProfTag
)
MetalSiteResidue
(in
rosetta.protocols.metal_interface._protocols_metal_interface_
)
MotifHitStats
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
make_base_pair_mutation()
(in
rosetta.protocols.motifs._protocols_motifs_
)
MetalSiteResidueAP
(in
rosetta.protocols.metal_interface._protocols_metal_interface_
)
MotifHitStatsAP
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
MAKE_BASE_STEP_MOVE
(in
rosetta.basic
)
MetalSiteResidueCAP
(in
rosetta.protocols.metal_interface._protocols_metal_interface_
)
MotifHitStatsCAP
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
MAKE_BASE_STEP_MOVE
(in
rosetta.basic._basic_
)
MetaMaxExpression
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
MotifLibrary
(in
rosetta.protocols.motifs._protocols_motifs_
)
MAKE_BASE_STEP_MOVE
(in
ProfTag
)
MetaMaxExpressionAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
MotifLibraryAP
(in
rosetta.protocols.motifs._protocols_motifs_
)
make_chi_move()
(in
JumpRotamerSidechainMover
)
MetaMaxExpressionCAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
MotifLibraryCAP
(in
rosetta.protocols.motifs._protocols_motifs_
)
make_chi_move()
(in
PerturbChiSidechainMover
)
MetaMinExpression
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
MotifMatch
(in
rosetta.protocols.motif_grafting.movers._protocols_motif_grafting_movers_
)
make_chi_move()
(in
PerturbRotamerSidechainMover
)
MetaMinExpressionAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
MotifMatchAP
(in
rosetta.protocols.motif_grafting.movers._protocols_motif_grafting_movers_
)
make_chi_move()
(in
SidechainMoverBase
)
MetaMinExpressionCAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
MotifMatchCAP
(in
rosetta.protocols.motif_grafting.movers._protocols_motif_grafting_movers_
)
make_claim()
(in
EnvClaim
)
MetaPoseEvaluator
(in
rosetta.protocols.evaluation._protocols_evaluation_
)
MotifMatchOverlapReq
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
make_coarse_pose()
(in
rosetta.protocols.farna._protocols_farna_
)
MetaPoseEvaluatorAP
(in
rosetta.protocols.evaluation._protocols_evaluation_
)
motifs
(in
rosetta.protocols
)
make_compatible_with_ROCS_custom_ForceField()
(in
GenPharmacophore
)
MetaPoseEvaluatorCAP
(in
rosetta.protocols.evaluation._protocols_evaluation_
)
MotifScoreFilter
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
make_compound_statement()
(in
rosetta.basic.database._basic_database_
)
MetaPoseInputStream
(in
rosetta.core.import_pose.pose_stream._core_import_pose_pose_stream_
)
MotifScoreFilterAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
make_cut_at_moving_suite()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
MetaPoseInputStreamAP
(in
rosetta.core.import_pose.pose_stream._core_import_pose_pose_stream_
)
MotifScoreFilterCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
make_Cx()
(in
rosetta.protocols.sic_dock._protocols_sic_dock_
)
MetaPoseInputStreamCAP
(in
rosetta.core.import_pose.pose_stream._core_import_pose_pose_stream_
)
MotifScoreFilterCreator
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
make_disjointed_foldtree()
(in
HotspotDisjointedFoldTreeMover
)
method_type()
(in
DunbrackEnergy
)
MotifScoreFilterCreatorAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
make_dna_mutations()
(in
rosetta.protocols.motifs._protocols_motifs_
)
method_type()
(in
CenRotDunEnergy
)
MotifScoreFilterCreatorCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
make_dna_rigid()
(in
rosetta.protocols.relax._protocols_relax_
)
method_type()
(in
HPatchEnergy
)
MotifSearch
(in
rosetta.protocols.motifs._protocols_motifs_
)
make_extended_coarse_pose()
(in
rosetta.protocols.farna._protocols_farna_
)
method_type()
(in
SurfaceEnergy
)
MotifSearchAP
(in
rosetta.protocols.motifs._protocols_motifs_
)
make_hbBasetoAcc_unitvector()
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
method_type()
(in
CarbonHBondEnergy
)
MotifSearchCAP
(in
rosetta.protocols.motifs._protocols_motifs_
)
make_hotspot_foldtree()
(in
rosetta.protocols.protein_interface_design._protocols_protein_interface_design_
)
method_type()
(in
ConstraintsEnergy
)
movable_jumps()
(in
DockMCMCycle
)
make_interface_combos()
(in
InterfaceFeatures
)
method_type()
(in
XtalMLEnergy
)
movable_jumps()
(in
DockingHighRes
)
make_jump()
(in
Jump
)
method_type()
(in
FullatomCustomPairDistanceEnergy
)
movable_jumps()
(in
DockingProtocol
)
make_jump()
(in
RT
)
method_type()
(in
CentroidDisulfideEnergy
)
movable_jumps()
(in
RigidBodyInfo
)
make_local_bb_change()
(in
LocalInserter
)
method_type()
(in
DisulfideMatchingEnergy
)
movable_jumps()
(in
TemperedDocking
)
make_local_bb_change()
(in
LocalInserter_SimpleMin
)
method_type()
(in
FullatomDisulfideEnergy
)
movable_jumps()
(in
InterfaceTaskOperation
)
make_local_bb_change_close_gaps()
(in
LocalInserter
)
method_type()
(in
DNAChiEnergy
)
move()
(in
StepWiseMonteCarlo
)
make_local_bb_change_close_gaps()
(in
LocalInserter_SimpleMin
)
method_type()
(in
DNATorsionEnergy
)
move_all_inserted()
(in
MembraneAbinitio
)
make_local_bb_change_include_cut()
(in
LocalInserter
)
method_type()
(in
FA_ElecEnergy
)
move_atoms_to_collcheck_begin()
(in
LigandConformer
)
make_local_bb_change_include_cut()
(in
LocalInserter_SimpleMin
)
method_type()
(in
FA_ElecEnergyAroAll
)
move_element()
(in
StepWiseMove
)
make_motif_filename()
(in
IRCollection
)
method_type()
(in
FA_ElecEnergyAroAro
)
move_jump_points_away()
(in
TransientCutpointHandler
)
make_move()
(in
BackboneMover
)
method_type()
(in
FA_GrpElecEnergy
)
move_jumps_between_chains()
(in
StepWiseProteinModelerOptions
)
make_move()
(in
ShearMover
)
method_type()
(in
RNA_FA_ElecEnergy
)
move_ligand_and_update_rhos_()
(in
PlaidFingerprint
)
make_move()
(in
SmallMover
)
method_type()
(in
ElecDensAllAtomCenEnergy
)
move_ligand_neighbor_to_desired_position()
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
make_move()
(in
JumpRotamerSidechainMover
)
method_type()
(in
ElecDensCenEnergy
)
move_ligand_to_desired_centroid()
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
make_move()
(in
PerturbChiSidechainMover
)
method_type()
(in
ElecDensEnergy
)
move_map()
(in
LoopMover_Refine_CCD
)
make_move()
(in
PerturbRotamerSidechainMover
)
method_type()
(in
FastDensEnergy
)
move_map()
(in
SaneMinMover
)
make_move()
(in
SidechainMover
)
method_type()
(in
PattersonCorrEnergy
)
move_map_from_loop()
(in
rosetta.protocols.loops._protocols_loops_
)
make_move()
(in
SidechainMoverBase
)
method_type()
(in
ElecDensAtomwiseEnergy
)
move_map_from_loops()
(in
rosetta.protocols.loops._protocols_loops_
)
make_movie()
(in
StepWiseMonteCarloOptions
)
method_type()
(in
AnalyticEtableEnergy
)
move_pose_to_standard_orie()
(in
PocketGrid
)
make_new_symmetric_PackerTask_by_requested_method()
(in
rosetta.core.pack._core_pack_
)
method_type()
(in
BaseEtableEnergy_T_core_scoring_etable_AnalyticEtableEnergy_T
)
move_type()
(in
StepWiseMove
)
make_partially_soft_etable()
(in
ScoringManager
)
method_type()
(in
BaseEtableEnergy_T_core_scoring_etable_TableLookupEtableEnergy_T
)
move_type_from_string()
(in
rosetta.protocols.stepwise.monte_carlo.mover._protocols_stepwise_monte_carlo_mover_
)
make_phosphate_nomenclature_matches_mini()
(in
rosetta.protocols.farna._protocols_farna_
)
method_type()
(in
TableLookupEtableEnergy
)
move_type_string()
(in
StepWiseMasterMover
)
make_points()
(in
rosetta.numeric.kdtree._numeric_kdtree_
)
method_type()
(in
FiberDiffractionEnergy
)
moveable_jump()
(in
rosetta.protocols.farna._protocols_farna_
)
make_pose_from_frags()
(in
rosetta.core.fragment._core_fragment_
)
method_type()
(in
FiberDiffractionEnergyDens
)
MoveBeforeFilter
(in
rosetta.protocols.filters._protocols_filters_
)
make_pose_from_saccharide_sequence()
(in
rosetta.core.pose._core_pose_
)
method_type()
(in
ContextDependentGeometricSolEnergy
)
MoveBeforeFilterAP
(in
rosetta.protocols.filters._protocols_filters_
)
make_pose_from_sequence()
(in
rosetta.core.pose._core_pose_
)
method_type()
(in
ContextIndependentGeometricSolEnergy
)
MoveBeforeFilterCAP
(in
rosetta.protocols.filters._protocols_filters_
)
make_pymol_script()
(in
LayerDesignOperation
)
method_type()
(in
ExactOccludedHbondSolEnergy
)
MoveBeforeFilterCreator
(in
rosetta.protocols.filters._protocols_filters_
)
make_rasmol_format_file()
(in
SelectResiduesByLayer
)
method_type()
(in
OccludedHbondSolEnergy
)
MoveBeforeFilterCreatorAP
(in
rosetta.protocols.filters._protocols_filters_
)
make_residue_mask_symmetric()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
method_type()
(in
OccludedHbondSolEnergy_onebody
)
MoveBeforeFilterCreatorCAP
(in
rosetta.protocols.filters._protocols_filters_
)
make_rot_lib
(in
rosetta.protocols
)
method_type()
(in
HackAroEnergy
)
moved()
(in
SimpleNode
)
make_score_function_consistent_with_symmetric_state_of_pose()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
method_type()
(in
HBondEnergy
)
moved()
(in
EnergyNode
)
make_sec()
(in
TMalign
)
method_type()
(in
DDPscore
)
moveFromStubFrame()
(in
StubGenerator
)
make_semisymmetric_movemap()
(in
SymAtomTreeMinimizer
)
method_type()
(in
LoopCloseEnergy
)
moveIntoStubFrame()
(in
StubGenerator
)
make_sequence_combinations()
(in
rosetta.protocols.dna._protocols_dna_
)
method_type()
(in
FaMPEnvEnergy
)
MoveMap
(in
rosetta.core.kinematics._core_kinematics_
)
make_sequence_shift()
(in
Loops
)
method_type()
(in
FaMPEnvSmoothEnergy
)
movemap
(in
rosetta.protocols.stepwise.modeler
)
make_simple_fold_tree_from_jump_frame()
(in
rosetta.core.fragment._core_fragment_
)
method_type()
(in
FaMPSolvEnergy
)
movemap()
(in
ClassicAbinitio
)
make_single_mutants()
(in
rosetta.protocols.dna._protocols_dna_
)
method_type()
(in
MPCbetaEnergy
)
movemap()
(in
KinematicControl
)
make_specific_mutant()
(in
PointMutScanDriver
)
method_type()
(in
MPEnvEnergy
)
movemap()
(in
MembraneAbinitio
)
make_star_foldtree()
(in
rosetta.protocols.forge.methods._protocols_forge_methods_
)
method_type()
(in
MPLipoEnergy
)
movemap()
(in
DnaInterfaceMinMover
)
make_strand_neighbor_two()
(in
StrandPairingSet
)
method_type()
(in
MPNonHelixPenalty
)
movemap()
(in
Bridge
)
make_stub_scorefxn()
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
method_type()
(in
MPPairEnergy
)
movemap()
(in
BuildInstruction
)
make_subdirs()
(in
rosetta.protocols.dna._protocols_dna_
)
method_type()
(in
MPTMProjPenalty
)
movemap()
(in
BuildManager
)
make_sure_full_model_info_is_setup()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
method_type()
(in
MPTerminiPenalty
)
movemap()
(in
ConnectRight
)
make_symmetric_fibril()
(in
rosetta.protocols.fibril._protocols_fibril_
)
method_type()
(in
BurialEnergy
)
movemap()
(in
GrowLeft
)
make_symmetric_movemap()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
method_type()
(in
CartesianBondedEnergy
)
movemap()
(in
GrowRight
)
make_symmetric_PackerTask_by_truncation()
(in
rosetta.core.pack._core_pack_
)
method_type()
(in
CenHBEnergy
)
movemap()
(in
SegmentRebuild
)
make_symmetric_pdb_info()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
method_type()
(in
CenPairEnergy
)
movemap()
(in
SegmentSwap
)
make_symmetric_pose()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
method_type()
(in
CenRotEnvEnergy
)
movemap()
(in
CCDLoopClosureMover
)
make_symmetric_task()
(in
SymEnergyCutRotamerTrialsMover
)
method_type()
(in
CenRotPairEnergy
)
movemap()
(in
LoopClosure
)
make_symmetric_task()
(in
SymPackRotamersMover
)
method_type()
(in
ChainbreakEnergy
)
movemap()
(in
SlidingWindowLoopClosure
)
make_symmetric_task()
(in
SymRotamerTrialsMover
)
method_type()
(in
ChemicalShiftAnisotropyEnergy
)
movemap()
(in
CartesianMD
)
make_tag()
(in
rosetta.utility._utility_
)
method_type()
(in
ContactOrderEnergy
)
movemap()
(in
MDBase
)
make_tag_with_dashes()
(in
rosetta.utility._utility_
)
method_type()
(in
ContextDependentLRTwoBodyEnergy
)
movemap()
(in
MoveMapMover
)
make_three_fold_symmetry_90_210_330()
(in
MakeRotLibMover
)
method_type()
(in
ContextDependentOneBodyEnergy
)
movemap()
(in
NullMover
)
make_two_fold_symmetry_0_180()
(in
MakeRotLibMover
)
method_type()
(in
ContextDependentTwoBodyEnergy
)
movemap()
(in
BBGaussianMover
)
make_two_fold_symmetry_135_315()
(in
MakeRotLibMover
)
method_type()
(in
ContextIndependentLRTwoBodyEnergy
)
movemap()
(in
BackboneMover
)
make_variants_match()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
method_type()
(in
ContextIndependentOneBodyEnergy
)
movemap()
(in
FragmentMover
)
MakeABEGO_SS_Score
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
ContextIndependentTwoBodyEnergy
)
movemap()
(in
MinMover
)
MakeABEGO_SS_ScoreAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
CustomAtomPairEnergy
)
movemap()
(in
RingConformationMover
)
MakeABEGO_SS_ScoreCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
D2H_SA_Energy
)
movemap()
(in
SymMinMover
)
MakeAmbigCSScore
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
DNA_BaseEnergy
)
movemap_as_OP()
(in
BuildManager
)
MakeAmbigCSScoreAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
DipolarCouplingEnergy
)
movemap_cen()
(in
AnchorMoversData
)
MakeAmbigCSScoreCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
DirectReadoutEnergy
)
movemap_cen_all()
(in
AnchorMoversData
)
MakeAtomPairConstraintsScore
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
DistanceChainbreakEnergy
)
movemap_cen_omegafixed()
(in
AnchorMoversData
)
MakeAtomPairConstraintsScoreAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
EnergyMethod
)
movemap_fa()
(in
AnchorMoversData
)
MakeAtomPairConstraintsScoreCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
EnvEnergy
)
movemap_fa_all()
(in
AnchorMoversData
)
MakeBFactor
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
EnvSmoothEnergy
)
movemap_fa_omegafixed()
(in
AnchorMoversData
)
MakeBFactorAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
Fa_MbenvEnergy
)
movemap_from_blueprint()
(in
FlxbbDesign
)
MakeBFactorCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
Fa_MbsolvEnergy
)
movemap_ptr()
(in
KinematicControl
)
makebinary()
(in
XfoxmScore
)
method_type()
(in
FreeDOF_Energy
)
movemap_torsion_id_begin()
(in
MoveMap
)
MakeBundle
(in
rosetta.protocols.helical_bundle._protocols_helical_bundle_
)
method_type()
(in
GaussianOverlapEnergy
)
movemap_torsion_id_end()
(in
MoveMap
)
MakeBundleAP
(in
rosetta.protocols.helical_bundle._protocols_helical_bundle_
)
method_type()
(in
GenBornEnergy
)
MoveMapAP
(in
rosetta.core.kinematics._core_kinematics_
)
MakeBundleCAP
(in
rosetta.protocols.helical_bundle._protocols_helical_bundle_
)
method_type()
(in
GoapEnergy
)
MoveMapBuilder
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
MakeBundleCreator
(in
rosetta.protocols.helical_bundle._protocols_helical_bundle_
)
method_type()
(in
HybridVDW_Energy
)
MoveMapBuilderAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
MakeBundleCreatorAP
(in
rosetta.protocols.helical_bundle._protocols_helical_bundle_
)
method_type()
(in
IntermolEnergy
)
MoveMapBuilderCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
MakeBundleCreatorCAP
(in
rosetta.protocols.helical_bundle._protocols_helical_bundle_
)
method_type()
(in
LK_BallEnergy
)
MoveMapBuilderLoader
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
MakeBundleHelix
(in
rosetta.protocols.helical_bundle._protocols_helical_bundle_
)
method_type()
(in
LK_PolarNonPolarEnergy
)
MoveMapBuilderLoaderAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
MakeBundleHelixAP
(in
rosetta.protocols.helical_bundle._protocols_helical_bundle_
)
method_type()
(in
LK_hack
)
MoveMapBuilderLoaderCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
MakeBundleHelixCAP
(in
rosetta.protocols.helical_bundle._protocols_helical_bundle_
)
method_type()
(in
LinearChainbreakEnergy
)
MoveMapBuilderLoaderCreator
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
MakeBundleHelixCreator
(in
rosetta.protocols.helical_bundle._protocols_helical_bundle_
)
method_type()
(in
LongRangeTwoBodyEnergy
)
MoveMapBuilderLoaderCreatorAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
MakeBundleHelixCreatorAP
(in
rosetta.protocols.helical_bundle._protocols_helical_bundle_
)
method_type()
(in
MMBondAngleEnergy
)
MoveMapBuilderLoaderCreatorCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
MakeBundleHelixCreatorCAP
(in
rosetta.protocols.helical_bundle._protocols_helical_bundle_
)
method_type()
(in
MMBondLengthEnergy
)
MoveMapCAP
(in
rosetta.core.kinematics._core_kinematics_
)
MakeConstScore
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
MMLJEnergyInter
)
MoveMapMover
(in
rosetta.protocols.moves._protocols_moves_
)
MakeConstScoreAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
MMLJEnergyIntra
)
MoveMapMoverAP
(in
rosetta.protocols.moves._protocols_moves_
)
MakeConstScoreCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
MMTorsionEnergy
)
MoveMapMoverCAP
(in
rosetta.protocols.moves._protocols_moves_
)
MakeCSScore
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
MembraneCbetaEnergy
)
MovePoseToMembraneCenterMover
(in
rosetta.protocols.rigid._protocols_rigid_
)
MakeCSScoreAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
MembraneCenPairEnergy
)
MovePoseToMembraneCenterMoverAP
(in
rosetta.protocols.rigid._protocols_rigid_
)
MakeCSScoreCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
MembraneEnvEnergy
)
MovePoseToMembraneCenterMoverCAP
(in
rosetta.protocols.rigid._protocols_rigid_
)
MakeDihedralConstraintsScore
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
MembraneEnvPenalties
)
Mover
(in
rosetta.protocols.moves._protocols_moves_
)
MakeDihedralConstraintsScoreAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
MembraneEnvSmoothEnergy
)
mover
(in
rosetta.protocols.stepwise.monte_carlo
)
MakeDihedralConstraintsScoreCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
MembraneLipo
)
mover()
(in
DofPassport
)
MakeDisulfideDistance
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
MissingEnergy
)
mover()
(in
DesignTask
)
MakeDisulfideDistanceAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
NMerPSSMEnergy
)
mover()
(in
MoverApplyingMover
)
MakeDisulfideDistanceCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
NMerRefEnergy
)
mover()
(in
TrialMover
)
MakeDisulfideIdentity
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
NMerSVMEnergy
)
mover()
(in
ChangeAndResetFoldTreeMover
)
MakeDisulfideIdentityAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
OmegaTetherEnergy
)
mover()
(in
ContingentAcceptMover
)
MakeDisulfideIdentityCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
OneBodyEnergy
)
mover()
(in
GenericMonteCarloMover
)
MakeFragmentAllAtomCrmsd
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
OtherPoseEnergy
)
mover()
(in
RationalMonteCarlo
)
MakeFragmentAllAtomCrmsdAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
P_AA_Energy
)
Mover_LoopHashRefine
(in
rosetta.protocols.loophash._protocols_loophash_
)
MakeFragmentAllAtomCrmsdCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
P_AA_pp_Energy
)
Mover_LoopHashRefineAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
MakeFragmentChunkCrms
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
PackStatEnergy
)
Mover_LoopHashRefineCAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
MakeFragmentChunkCrmsAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
PairEnergy
)
mover_name()
(in
DomainAssemblyCreator
)
MakeFragmentChunkCrmsCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
PeptideBondEnergy
)
mover_name()
(in
AbscriptLoopCloserCMCreator
)
MakeFragmentCrmsd
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
PoissonBoltzmannEnergy
)
mover_name()
(in
AbscriptMoverCreator
)
MakeFragmentCrmsdAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
ProClosureEnergy
)
mover_name()
(in
ConstraintPreparerCreator
)
MakeFragmentCrmsdCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
ProQ_Energy
)
mover_name()
(in
FragmentCMCreator
)
MakeFragmentCrmsdResDepth
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
RG_Energy_Fast
)
mover_name()
(in
FragmentJumpCMCreator
)
MakeFragmentCrmsdResDepthAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
RG_LocalEnergy
)
mover_name()
(in
RigidChunkCMCreator
)
MakeFragmentCrmsdResDepthCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
RMS_Energy
)
mover_name()
(in
StructPerturberCMCreator
)
MakeFragmentDME
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
Rama2BOffsetEnergy
)
mover_name()
(in
InterfaceAnalyzerMoverCreator
)
MakeFragmentDMEAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
RamachandranEnergy
)
mover_name()
(in
CDRDihedralConstraintMoverCreator
)
MakeFragmentDMECAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
RamachandranEnergy2B
)
mover_name()
(in
ParatopeEpitopeSiteConstraintMoverCreator
)
MakeFragmentScoringMethod
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
ReferenceEnergy
)
mover_name()
(in
ParatopeSiteConstraintMoverCreator
)
MakeFragmentScoringMethodAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
ReferenceEnergyNoncanonical
)
mover_name()
(in
AntibodyDesignMoverCreator
)
MakeFragmentScoringMethodCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
ResidualDipolarCouplingEnergy
)
mover_name()
(in
AntibodyDesignProtocolCreator
)
MakeGunnCostScore
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
ResidualDipolarCouplingEnergy_Rohl
)
mover_name()
(in
MutateFrameworkForClusterCreator
)
MakeGunnCostScoreAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
SA_Energy
)
mover_name()
(in
BackrubMoverCreator
)
MakeGunnCostScoreCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
SecondaryStructureEnergy
)
mover_name()
(in
BackrubProtocolCreator
)
MakeHydrophobicityProfileSimilarity
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
SequenceDependentRefEnergy
)
mover_name()
(in
BackrubSidechainMoverCreator
)
MakeHydrophobicityProfileSimilarityAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
ShortRangeTwoBodyEnergy
)
mover_name()
(in
DbTrajectoryRecorderCreator
)
MakeHydrophobicityProfileSimilarityCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
SmoothCenPairEnergy
)
mover_name()
(in
HamiltonianExchangeCreator
)
MakeHydrophobicitySimilarity
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
SmoothEnvEnergy
)
mover_name()
(in
MetricRecorderCreator
)
MakeHydrophobicitySimilarityAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
SuckerEnergy
)
mover_name()
(in
MetropolisHastingsMoverCreator
)
MakeHydrophobicitySimilarityCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
SymmetricLigandEnergy
)
mover_name()
(in
PDBTrajectoryRecorderCreator
)
MakeInterbondAngleScore
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
TwoBodyEnergy
)
mover_name()
(in
ParallelTemperingCreator
)
MakeInterbondAngleScoreAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
UnfoldedStateEnergy
)
mover_name()
(in
ProgressBarObserverCreator
)
MakeInterbondAngleScoreCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
WaterAdductHBondEnergy
)
mover_name()
(in
SidechainMetropolisHastingsMoverCreator
)
MakeJCoupling
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
WaterAdductIntraEnergy
)
mover_name()
(in
SilentTrajectoryRecorderCreator
)
MakeJCouplingAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
WholeStructureEnergy
)
mover_name()
(in
SimulatedTemperingCreator
)
MakeJCouplingCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
YHHPlanarityEnergy
)
mover_name()
(in
TrialCounterObserverCreator
)
MakeLAMBEGO_Similarity
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
pHEnergy
)
mover_name()
(in
LoopRelaxMoverCreator
)
MakeLAMBEGO_SimilarityAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
SugarBackboneEnergy
)
mover_name()
(in
ContactMapCreator
)
MakeLAMBEGO_SimilarityCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
DFIRE_Energy
)
mover_name()
(in
FitBfactorsMoverCreator
)
MakeMidPhiOut
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
NVscore
)
mover_name()
(in
LoadDensityMapMoverCreator
)
MakeMidPhiOutAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
OrbitalsScore
)
mover_name()
(in
RecomputeDensityMapMoverCreator
)
MakeMidPhiOutCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
HolesEnergy
)
mover_name()
(in
SetCrystWeightMoverCreator
)
MakeMidPsiOut
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
HolesEnergyRes
)
mover_name()
(in
SetRefinementOptionsMoverCreator
)
MakeMidPsiOutAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
SurfEnergy
)
mover_name()
(in
TagPoseWithRefinementStatsMoverCreator
)
MakeMidPsiOutCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
SurfVolEnergy
)
mover_name()
(in
UpdateSolventMoverCreator
)
MakePartialSecondarySimilarity
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
RG_Energy_RNA
)
mover_name()
(in
CreateAngleConstraintCreator
)
MakePartialSecondarySimilarityAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
RNA_BulgeEnergy
)
mover_name()
(in
CreateDistanceConstraintCreator
)
MakePartialSecondarySimilarityCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
RNA_FullAtomStackingEnergy
)
mover_name()
(in
CreateTorsionConstraintCreator
)
MakePCS_FragDistance
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
RNA_FullAtomVDW_BasePhosphate
)
mover_name()
(in
DeclareBondCreator
)
MakePCS_FragDistanceAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
RNA_JR_SuiteEnergy
)
mover_name()
(in
PeptideStubMoverCreator
)
MakePCS_FragDistanceCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
RNA_LJ_BaseEnergy
)
mover_name()
(in
GreedyOptMutationMoverCreator
)
MakePhi
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
RNA_Mg_Energy
)
mover_name()
(in
ParetoOptMutationMoverCreator
)
MakePhiAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
RNA_PairwiseLowResolutionEnergy
)
mover_name()
(in
DesignProteinBackboneAroundDNACreator
)
MakePhiCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
RNA_SugarCloseEnergy
)
mover_name()
(in
DnaInterfaceMinMoverCreator
)
MakePhiPsiRmsd
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
RNA_SuiteEnergy
)
mover_name()
(in
DnaInterfaceMultiStateDesignCreator
)
MakePhiPsiRmsdAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
RNA_TorsionEnergy
)
mover_name()
(in
DnaInterfacePackerCreator
)
MakePhiPsiRmsdCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
RNA_VDW_Energy
)
mover_name()
(in
SeparateDnaFromNonDnaCreator
)
MakePhiPsiSquareWell
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
StackElecEnergy
)
mover_name()
(in
ConformerSwitchMoverCreator
)
MakePhiPsiSquareWellAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
RNA_ChemicalShiftEnergy
)
mover_name()
(in
DockSetupMoverCreator
)
MakePhiPsiSquareWellCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
RNA_ChemicalMappingEnergy
)
mover_name()
(in
DockingInitialPerturbationCreator
)
MakePolyXMover
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
method_type()
(in
RNA_DataBackboneEnergy
)
mover_name()
(in
DockingProtocolCreator
)
MakePolyXMoverAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
method_type()
(in
FastSAXSEnergy
)
mover_name()
(in
TemperedDockingCreator
)
MakePolyXMoverCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
method_type()
(in
SAXSEnergy
)
mover_name()
(in
MPDockingMoverCreator
)
MakePolyXMoverCreator
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
method_type()
(in
symEnergy
)
mover_name()
(in
MPDockingSetupMoverCreator
)
MakePolyXMoverCreatorAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
method_type()
(in
AACompositionEnergy
)
mover_name()
(in
BfactorFittingMoverCreator
)
MakePolyXMoverCreatorCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
method_type()
(in
NatbiasSecondaryStructureEnergy
)
mover_name()
(in
DensityMorphingMoverCreator
)
MakeProfileScore
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
EnsembleEnergy
)
mover_name()
(in
ReportFSCCreator
)
MakeProfileScoreAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
InterchainEnvEnergy
)
mover_name()
(in
ScaleMapIntensitiesCreator
)
MakeProfileScoreBlosum62
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
InterchainPairEnergy
)
mover_name()
(in
SetupForDensityScoringMoverCreator
)
MakeProfileScoreBlosum62AP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
ResidualDipolarCouplingEnergyRigidSegments
)
mover_name()
(in
CoMTrackerCMCreator
)
MakeProfileScoreBlosum62CAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
SpecialRotamerEnergy
)
mover_name()
(in
EnvMoverCreator
)
MakeProfileScoreCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
PCS_Energy
)
mover_name()
(in
ScriptCMCreator
)
MakeProfileScoreDistWeight
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
PcsEnergy
)
mover_name()
(in
ReportToDBCreator
)
MakeProfileScoreDistWeightAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
PCS_Energy_Ts1
)
mover_name()
(in
TrajectoryReportToDBCreator
)
MakeProfileScoreDistWeightCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
PCS_Energy_Ts2
)
mover_name()
(in
BluePrintBDRCreator
)
MakeProfileScoreL1
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
PCS_Energy_Ts3
)
mover_name()
(in
CircularPermutationCreator
)
MakeProfileScoreL1AP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
PCS_Energy_Ts4
)
mover_name()
(in
SheetCstGeneratorCreator
)
MakeProfileScoreL1CAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_type()
(in
PDDFEnergy
)
mover_name()
(in
SetAACompositionPotentialCreator
)
MakeProfileScoreStructL1
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
method_weights()
(in
EnergyMethodOptions
)
mover_name()
(in
SetSecStructEnergiesCreator
)
MakeProfileScoreStructL1AP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
methodname()
(in
Scheduler
)
mover_name()
(in
FlexPepDockingProtocolCreator
)
MakeProfileScoreStructL1CAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
MethodParams
(in
rosetta.protocols.mpi_refinement._protocols_mpi_refinement_
)
mover_name()
(in
FlxbbDesignCreator
)
MakeProfileScoreSubMatrix
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
MethodParamsAP
(in
rosetta.protocols.mpi_refinement._protocols_mpi_refinement_
)
mover_name()
(in
GeneralizedKICCreator
)
MakeProfileScoreSubMatrixAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
MethodParamsCAP
(in
rosetta.protocols.mpi_refinement._protocols_mpi_refinement_
)
mover_name()
(in
AnchoredGraftMoverCreator
)
MakeProfileScoreSubMatrixCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
methods
(in
rosetta.core.scoring
)
mover_name()
(in
CCDEndsGraftMoverCreator
)
MakeProlinePhiScore
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
methods
(in
rosetta.protocols.forge
)
mover_name()
(in
DeleteRegionMoverCreator
)
MakeProlinePhiScoreAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
methods
(in
rosetta.protocols.scoring
)
mover_name()
(in
InsertPoseIntoPoseMoverCreator
)
MakeProlinePhiScoreCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
methods_picked()
(in
Scheduler
)
mover_name()
(in
KeepRegionMoverCreator
)
MakePsi
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
METHYL_GLYCOSIDE
(in
rosetta
)
mover_name()
(in
ReplaceRegionMoverCreator
)
MakePsiAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
METHYL_GLYCOSIDE
(in
rosetta.core.chemical
)
mover_name()
(in
BackboneGridSamplerCreator
)
MakePsiCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
METHYL_GLYCOSIDE
(in
rosetta.core.chemical._core_chemical_
)
mover_name()
(in
BundleGridSamplerCreator
)
MakeRamaScore
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
METHYL_GLYCOSIDE
(in
VariantType
)
mover_name()
(in
FitSimpleHelixCreator
)
MakeRamaScoreAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
METHYLATED_CTERMINUS
(in
rosetta
)
mover_name()
(in
MakeBundleCreator
)
MakeRamaScoreCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
METHYLATED_CTERMINUS
(in
rosetta.core.chemical
)
mover_name()
(in
MakeBundleHelixCreator
)
MakeRDCScore
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
METHYLATED_CTERMINUS
(in
rosetta.core.chemical._core_chemical_
)
mover_name()
(in
PerturbBundleCreator
)
MakeRDCScoreAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
METHYLATED_CTERMINUS
(in
ResidueProperty
)
mover_name()
(in
PerturbBundleHelixCreator
)
MakeRDCScoreCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
METHYLATED_CTERMINUS_VARIANT
(in
rosetta
)
mover_name()
(in
PlaceSurfaceProbeCreator
)
MakeRotLibJob
(in
rosetta.protocols.make_rot_lib._protocols_make_rot_lib_
)
METHYLATED_CTERMINUS_VARIANT
(in
rosetta.core.chemical
)
mover_name()
(in
BackboneTorsionPerturbationCreator
)
MakeRotLibJobAP
(in
rosetta.protocols.make_rot_lib._protocols_make_rot_lib_
)
METHYLATED_CTERMINUS_VARIANT
(in
rosetta.core.chemical._core_chemical_
)
mover_name()
(in
BackboneTorsionSamplerCreator
)
MakeRotLibJobCAP
(in
rosetta.protocols.make_rot_lib._protocols_make_rot_lib_
)
METHYLATED_CTERMINUS_VARIANT
(in
VariantType
)
mover_name()
(in
CartesianSamplerCreator
)
MakeRotLibJobInputter
(in
rosetta.protocols.make_rot_lib._protocols_make_rot_lib_
)
METHYLATED_NTERM_VARIANT
(in
rosetta
)
mover_name()
(in
HybridizeProtocolCreator
)
MakeRotLibJobInputterAP
(in
rosetta.protocols.make_rot_lib._protocols_make_rot_lib_
)
METHYLATED_NTERM_VARIANT
(in
rosetta.core.chemical
)
mover_name()
(in
IdealizeMoverCreator
)
MakeRotLibJobInputterCAP
(in
rosetta.protocols.make_rot_lib._protocols_make_rot_lib_
)
METHYLATED_NTERM_VARIANT
(in
rosetta.core.chemical._core_chemical_
)
mover_name()
(in
AddHydrogensCreator
)
MakeRotLibJobInputterCreator
(in
rosetta.protocols.make_rot_lib._protocols_make_rot_lib_
)
METHYLATED_NTERM_VARIANT
(in
VariantType
)
mover_name()
(in
CompoundTranslateCreator
)
MakeRotLibJobInputterCreatorAP
(in
rosetta.protocols.make_rot_lib._protocols_make_rot_lib_
)
METHYLATION
(in
rosetta
)
mover_name()
(in
ComputeLigandRDFCreator
)
MakeRotLibJobInputterCreatorCAP
(in
rosetta.protocols.make_rot_lib._protocols_make_rot_lib_
)
METHYLATION
(in
rosetta.core.chemical
)
mover_name()
(in
FinalMinimizerCreator
)
MakeRotLibMover
(in
rosetta.protocols.make_rot_lib._protocols_make_rot_lib_
)
METHYLATION
(in
rosetta.core.chemical._core_chemical_
)
mover_name()
(in
GrowLigandCreator
)
MakeRotLibMoverAP
(in
rosetta.protocols.make_rot_lib._protocols_make_rot_lib_
)
METHYLATION
(in
VariantType
)
mover_name()
(in
HighResDockerCreator
)
MakeRotLibMoverCAP
(in
rosetta.protocols.make_rot_lib._protocols_make_rot_lib_
)
metric()
(in
Pose
)
mover_name()
(in
InterfaceScoreCalculatorCreator
)
MakeRotLibOptionsData
(in
rosetta.protocols.make_rot_lib._protocols_make_rot_lib_
)
metric_value_template()
(in
MetricValueGetter
)
mover_name()
(in
LigandDesignCreator
)
MakeRotLibOptionsDataAP
(in
rosetta.protocols.make_rot_lib._protocols_make_rot_lib_
)
MetricRecorder
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
mover_name()
(in
MinimizeBackboneCreator
)
MakeRotLibOptionsDataCAP
(in
rosetta.protocols.make_rot_lib._protocols_make_rot_lib_
)
MetricRecorderAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
mover_name()
(in
RandomConformersCreator
)
MakeRotLibPolymerType
(in
rosetta.protocols.make_rot_lib._protocols_make_rot_lib_
)
MetricRecorderCAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
mover_name()
(in
RotateCreator
)
MakeScoreEValuator
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
MetricRecorderCreator
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
mover_name()
(in
RotatesCreator
)
MakeScoreEValuatorAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
MetricRecorderCreatorAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
mover_name()
(in
SlideTogetherCreator
)
MakeScoreEValuatorCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
MetricRecorderCreatorCAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
mover_name()
(in
StartFromCreator
)
MakeSecondaryIdentity
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
metrics
(in
rosetta.core.pose
)
mover_name()
(in
TransformCreator
)
MakeSecondaryIdentityAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
MetricValueBase
(in
rosetta.basic._basic_
)
mover_name()
(in
TranslateCreator
)
MakeSecondaryIdentityCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
MetricValueBaseAP
(in
rosetta.basic._basic_
)
mover_name()
(in
WriteLigandMolFileCreator
)
MakeSecondarySimilarity
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
MetricValueBaseCAP
(in
rosetta.basic._basic_
)
mover_name()
(in
LoopHashDiversifierCreator
)
MakeSecondarySimilarityAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
MetricValueGetter
(in
rosetta.protocols.toolbox.pose_metric_calculators._protocols_toolbox_pose_metric_calculators_
)
mover_name()
(in
LoopHashMoverWrapperCreator
)
MakeSecondarySimilarityCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
MetricValueGetterAP
(in
rosetta.protocols.toolbox.pose_metric_calculators._protocols_toolbox_pose_metric_calculators_
)
mover_name()
(in
FoldTreeFromLoopsCreator
)
MakeSequenceIdentity
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
MetricValueGetterCAP
(in
rosetta.protocols.toolbox.pose_metric_calculators._protocols_toolbox_pose_metric_calculators_
)
mover_name()
(in
CCDLoopClosureMoverCreator
)
MakeSequenceIdentityAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
metropolis_hastings_mover()
(in
BackrubMover
)
mover_name()
(in
LoopCMCreator
)
MakeSequenceIdentityCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
metropolis_hastings_mover()
(in
BackrubSidechainMover
)
mover_name()
(in
MatcherMoverCreator
)
MakeSolventAccessibility
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
metropolis_hastings_mover()
(in
ThermodynamicMover
)
mover_name()
(in
ExtractSubposeMoverCreator
)
MakeSolventAccessibilityAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
metropolis_hastings_mover()
(in
BalancedKicMover
)
mover_name()
(in
MatDesGreedyOptMutationMoverCreator
)
MakeSolventAccessibilityCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
metropolis_hastings_mover()
(in
RigidBodyDeterministicSpinMover
)
mover_name()
(in
SchemePlaceMotifsMoverCreator
)
MakeStarTopologyMover
(in
rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
)
metropolis_hastings_mover()
(in
RigidBodyDofPerturbMover
)
mover_name()
(in
SymDofMoverCreator
)
MakeStarTopologyMoverAP
(in
rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
)
metropolis_hastings_mover()
(in
RigidBodyDofRandomTransMover
)
mover_name()
(in
CartesianMDCreator
)
MakeStarTopologyMoverCAP
(in
rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
)
metropolis_hastings_mover()
(in
RigidBodyDofRandomizeMover
)
mover_name()
(in
AddMPLigandMoverCreator
)
MakeStarTopologyMoverCreator
(in
rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
)
metropolis_hastings_mover()
(in
RigidBodyDofSeqPerturbMover
)
mover_name()
(in
AddMembraneMoverCreator
)
MakeStarTopologyMoverCreatorAP
(in
rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
)
metropolis_hastings_mover()
(in
RigidBodyDofSeqRandomizeMover
)
mover_name()
(in
FlipMoverCreator
)
MakeStarTopologyMoverCreatorCAP
(in
rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
)
metropolis_hastings_mover()
(in
RigidBodyDofSeqTransMover
)
mover_name()
(in
MembranePositionFromTopologyMoverCreator
)
MakeTalosSSSimilarity
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
metropolis_hastings_mover()
(in
RigidBodyDofTransMover
)
mover_name()
(in
RotationMoverCreator
)
MakeTalosSSSimilarityAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
metropolis_hastings_mover()
(in
RigidBodyMover
)
mover_name()
(in
SetMembraneCenterMoverCreator
)
MakeTalosSSSimilarityCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
metropolis_hastings_mover()
(in
RigidBodyPerturbMover
)
mover_name()
(in
SetMembraneNormalMoverCreator
)
MakeTorsionBinSimilarity
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
metropolis_hastings_mover()
(in
RigidBodyPerturbNoCenterMover
)
mover_name()
(in
SetMembranePositionMoverCreator
)
MakeTorsionBinSimilarityAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
metropolis_hastings_mover()
(in
RigidBodyPerturbRandomJumpMover
)
mover_name()
(in
TransformIntoMembraneMoverCreator
)
MakeTorsionBinSimilarityCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
metropolis_hastings_mover()
(in
RigidBodyRandomizeMover
)
mover_name()
(in
TranslationMoverCreator
)
manager()
(in
VarLengthBuild
)
metropolis_hastings_mover()
(in
RigidBodySpinMover
)
mover_name()
(in
TranslationRotationMoverCreator
)
manager()
(in
AbstractArchiveBase
)
metropolis_hastings_mover()
(in
RigidBodyTransMover
)
mover_name()
(in
SymmetricAddMembraneMoverCreator
)
manager_type()
(in
JD2ResourceManagerCreator
)
metropolis_hastings_mover()
(in
UniformRigidBodyMover
)
mover_name()
(in
VisualizeEmbeddingMoverCreator
)
manipulate_cut_bias()
(in
FoldandDockClaimer
)
metropolis_hastings_mover()
(in
UniformSphereTransMover
)
mover_name()
(in
VisualizeMembraneMoverCreator
)
manipulate_cut_bias()
(in
MembraneTopologyClaimer
)
metropolis_hastings_mover()
(in
BBConRotMover
)
mover_name()
(in
MotifGraftCreator
)
manipulate_cut_bias()
(in
TopologyClaimer
)
metropolis_hastings_mover()
(in
BBG8T3AMover
)
mover_name()
(in
MotifDnaPackerCreator
)
manual_call()
(in
LoopHashRelaxProtocol
)
metropolis_hastings_mover()
(in
BBGaussianMover
)
mover_name()
(in
DsspMoverCreator
)
map()
(in
CacheableStringFloatMap
)
metropolis_hastings_mover()
(in
BackboneMover
)
mover_name()
(in
IfMoverCreator
)
map()
(in
CacheableStringMap
)
metropolis_hastings_mover()
(in
ShearMover
)
mover_name()
(in
IteratedConvergenceMoverCreator
)
map()
(in
WriteableCacheableMap
)
metropolis_hastings_mover()
(in
SmallMover
)
mover_name()
(in
PyMolMoverCreator
)
map()
(in
CacheableAtomID_MapVector
)
metropolis_hastings_mover()
(in
JumpRotamerSidechainMover
)
mover_name()
(in
RampingMoverCreator
)
map2keyvector()
(in
LigandMotifSearch
)
metropolis_hastings_mover()
(in
PerturbChiSidechainMover
)
mover_name()
(in
RandomMoverCreator
)
map2keyvector()
(in
MotifSearch
)
metropolis_hastings_mover()
(in
PerturbRotamerSidechainMover
)
mover_name()
(in
NcbbDockDesignProtocolCreator
)
map2target()
(in
Template
)
metropolis_hastings_mover()
(in
SidechainMCMover
)
mover_name()
(in
OopCreatorMoverCreator
)
map2template()
(in
Template
)
metropolis_hastings_mover()
(in
SidechainMover
)
mover_name()
(in
OopDockDesignProtocolCreator
)
map_char_pair_Size_Size
(in
rosetta.core._core_
)
metropolis_hastings_mover()
(in
SidechainMoverBase
)
mover_name()
(in
NormalModeMinimizerCreator
)
map_char_to_torsion_bin()
(in
rosetta.core.conformation._core_conformation_
)
MetropolisHastingsMover
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
mover_name()
(in
SetupPoissonBoltzmannPotentialCreator
)
map_constraints_from_original_pose()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
MetropolisHastingsMoverAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
mover_name()
(in
AddChainBreakCreator
)
map_indexing_suite_map_char_pair_Size_Size_entry
(in
rosetta.core._core_
)
MetropolisHastingsMoverCAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
mover_name()
(in
AddSidechainConstraintsToHotspotsCreator
)
map_indexing_suite_map_int_int_entry
(in
rosetta.core._core_
)
MetropolisHastingsMoverCreator
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
mover_name()
(in
BackrubDDMoverCreator
)
map_indexing_suite_map_int_string_entry
(in
rosetta.core._core_
)
MetropolisHastingsMoverCreatorAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
mover_name()
(in
BestHotspotCstMoverCreator
)
map_indexing_suite_map_Real_Real_entry
(in
rosetta.core._core_
)
MetropolisHastingsMoverCreatorCAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
mover_name()
(in
BuildAlaPoseCreator
)
map_indexing_suite_map_Real_string_entry
(in
rosetta.core._core_
)
mg_calculation_annotated_sequence()
(in
RNA_ScoringInfo
)
mover_name()
(in
DesignMinimizeHbondsCreator
)
map_indexing_suite_map_Size_Real_entry
(in
rosetta.core._core_
)
mg_ref
(in
ScoreType
)
mover_name()
(in
DisulfideMoverCreator
)
map_indexing_suite_map_Size_Size_entry
(in
rosetta.core._core_
)
mg_ref
(in
rosetta.core.scoring._core_scoring_
)
mover_name()
(in
DockAndRetrieveSidechainsCreator
)
map_indexing_suite_map_Size_string_entry
(in
rosetta.core._core_
)
mg_ref
(in
rosetta.core.scoring
)
mover_name()
(in
DockWithHotspotMoverCreator
)
map_indexing_suite_map_Size_SymDof_entry
(in
rosetta.core._core_
)
mg_ref
(in
rosetta
)
mover_name()
(in
FavorNativeResiduePreCycleCreator
)
map_indexing_suite_map_SSize_SSize_entry
(in
rosetta.core._core_
)
mid_pos()
(in
SS_Base
)
mover_name()
(in
FavorNonNativeResiduePreCycleCreator
)
map_indexing_suite_map_SSize_string_entry
(in
rosetta.core._core_
)
middle_res()
(in
KinematicMover
)
mover_name()
(in
HotspotDisjointedFoldTreeMoverCreator
)
map_indexing_suite_map_string_int_entry
(in
rosetta.core._core_
)
MidPhiOut
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
mover_name()
(in
HotspotHasherMoverCreator
)
map_indexing_suite_map_string_Real_entry
(in
rosetta.core._core_
)
MidPhiOutAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
mover_name()
(in
InterfaceRecapitulationMoverCreator
)
map_indexing_suite_map_string_Size_entry
(in
rosetta.core._core_
)
MidPhiOutCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
mover_name()
(in
LoopFinderCreator
)
map_indexing_suite_map_string_SSize_entry
(in
rosetta.core._core_
)
midpoint()
(in
Loop
)
mover_name()
(in
LoopLengthChangeCreator
)
map_indexing_suite_map_string_string_entry
(in
rosetta.core._core_
)
MidPsiOut
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
mover_name()
(in
LoopMoverFromCommandLineCreator
)
map_int_int
(in
rosetta.core._core_
)
MidPsiOutAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
mover_name()
(in
LoopOverCreator
)
map_int_string
(in
rosetta.core._core_
)
MidPsiOutCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
mover_name()
(in
LoopRemodelCreator
)
map_of_weighted_scores()
(in
rosetta.core.import_pose.atom_tree_diffs._core_import_pose_atom_tree_diffs_
)
MIN
(in
rosetta.protocols.simple_filters
)
mover_name()
(in
MapHotspotCreator
)
map_pairings2target()
(in
Template
)
MIN
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
mover_name()
(in
PatchdockTransformCreator
)
map_pairings2template()
(in
Template
)
MIN
(in
Operation
)
mover_name()
(in
PeptideStapleDesignMoverCreator
)
map_Real_Real
(in
rosetta.core._core_
)
min()
(in
DOF_ID_Range
)
mover_name()
(in
PlaceOnLoopCreator
)
map_Real_string
(in
rosetta.core._core_
)
min()
(in
TorsionID_Range
)
mover_name()
(in
PlaceSimultaneouslyMoverCreator
)
map_seq1_seq2()
(in
rosetta.core.sequence._core_sequence_
)
min()
(in
rosetta.numeric._numeric_
)
mover_name()
(in
PlaceStubMoverCreator
)
map_Size_Real
(in
rosetta.core._core_
)
min()
(in
xyzTriple_Real
)
mover_name()
(in
PlacementAuctionMoverCreator
)
map_Size_Size
(in
rosetta.core._core_
)
min()
(in
xyzTriple_SSize
)
mover_name()
(in
PlacementMinimizationMoverCreator
)
map_Size_string
(in
rosetta.core._core_
)
min()
(in
xyzTriple_Size
)
mover_name()
(in
PrepackMoverCreator
)
map_Size_SymDof
(in
rosetta.core._core_
)
min()
(in
xyzTriple_double
)
mover_name()
(in
ProteinInterfaceMultiStateDesignMoverCreator
)
map_SSize_SSize
(in
rosetta.core._core_
)
min()
(in
xyzTriple_float
)
mover_name()
(in
RandomMutationCreator
)
map_SSize_string
(in
rosetta.core._core_
)
min()
(in
xyzVector_Real
)
mover_name()
(in
RepackMinimizeCreator
)
map_string_int
(in
rosetta.core._core_
)
min()
(in
xyzVector_SSize
)
mover_name()
(in
SaveAndRetrieveSidechainsCreator
)
map_string_Real
(in
rosetta.core._core_
)
min()
(in
xyzVector_Size
)
mover_name()
(in
SetAtomTreeCreator
)
map_string_Size
(in
rosetta.core._core_
)
min()
(in
xyzVector_double
)
mover_name()
(in
SetTemperatureFactorCreator
)
map_string_SSize
(in
rosetta.core._core_
)
min()
(in
xyzVector_float
)
mover_name()
(in
SetupHotspotConstraintsLoopsMoverCreator
)
map_string_string
(in
rosetta.core._core_
)
min()
(in
RandomGenerator
)
mover_name()
(in
SetupHotspotConstraintsMoverCreator
)
map_string_to_torsion_bin_string()
(in
rosetta.core.conformation._core_conformation_
)
min()
(in
rosetta.utility._utility_
)
mover_name()
(in
ShoveResidueMoverCreator
)
map_symmetric_res_pairs()
(in
SymmetryInfo
)
min_angle()
(in
AngleToVector
)
mover_name()
(in
SpinMoverCreator
)
map_to_CEN()
(in
AmbiguousNMRDistanceConstraint
)
min_atoms()
(in
BackrubMover
)
mover_name()
(in
SubroutineMoverCreator
)
map_torsion_bin_to_char()
(in
rosetta.core.conformation._core_conformation_
)
min_bb()
(in
PrepackMover
)
mover_name()
(in
TaskAwareCstsCreator
)
mapfile_activated()
(in
StepWiseProteinModelerOptions
)
min_bb()
(in
DesignRepackMover
)
mover_name()
(in
TopologyBrokerMoverCreator
)
MapHotspot
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
min_bb_set()
(in
DesignRepackMover
)
mover_name()
(in
TryRotamersCreator
)
MapHotspotAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
min_bbrms()
(in
LoopHashMoverWrapper
)
mover_name()
(in
VLBCreator
)
MapHotspotCAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
min_client_rank()
(in
MPIFileBufJobDistributor
)
mover_name()
(in
IdealizeHelicesMoverCreator
)
MapHotspotCreator
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
min_dis()
(in
DistanceFunc
)
mover_name()
(in
MakeStarTopologyMoverCreator
)
MapHotspotCreatorAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
min_dis()
(in
Coulomb
)
mover_name()
(in
OptimizeThreadingMoverCreator
)
MapHotspotCreatorCAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
min_dis2()
(in
Coulomb
)
mover_name()
(in
AtomCoordinateCstMoverCreator
)
mapping()
(in
SequenceMapping
)
min_dist()
(in
MMLJScore
)
mover_name()
(in
ClassicRelaxCreator
)
mapping_to_alignment()
(in
rosetta.core.sequence._core_sequence_
)
min_heap()
(in
Exemplar
)
mover_name()
(in
FastRelaxCreator
)
mapSHT()
(in
ElectronDensity
)
min_inter_ss_bbrms()
(in
LoopHashDiversifier
)
mover_name()
(in
LocalRelaxCreator
)
mapStringToRecord()
(in
PDB_DReader
)
min_intra_ss_bbrms()
(in
LoopHashDiversifier
)
mover_name()
(in
MPFastRelaxMoverCreator
)
mapto()
(in
Obsolet_NamedAtomPairConstraint
)
min_len_helix()
(in
TorsionFragmentMover
)
mover_name()
(in
RigidBodyPerturbNoCenterMoverCreator
)
maqw
(in
atomitem
)
min_len_strand()
(in
TorsionFragmentMover
)
mover_name()
(in
RigidBodyTransMoverCreator
)
maqw
(in
rosetta.core.scoring.rna.chemical_shift._core_scoring_rna_chemical_shift_
)
min_length()
(in
EnzdesLoopInfo
)
mover_name()
(in
RollMoverCreator
)
maqw
(in
rosetta.core.scoring.rna.chemical_shift
)
min_loop_size()
(in
MultiThreadingMover
)
mover_name()
(in
UniformRigidBodyCMCreator
)
maqx
(in
atomitem
)
min_loop_size()
(in
ThreadingMover
)
mover_name()
(in
UniformRigidBodyMoverCreator
)
maqx
(in
rosetta.core.scoring.rna.chemical_shift._core_scoring_rna_chemical_shift_
)
min_neighbor_sc()
(in
CDRGraftDesignOptions
)
mover_name()
(in
AdditionalOutputWrapperCreator
)
maqx
(in
rosetta.core.scoring.rna.chemical_shift
)
min_options()
(in
DnaInterfaceMinMover
)
mover_name()
(in
MultipleOutputWrapperCreator
)
maqy
(in
atomitem
)
min_options()
(in
MinMover
)
mover_name()
(in
MultiplePoseMoverCreator
)
maqy
(in
rosetta.core.scoring.rna.chemical_shift._core_scoring_rna_chemical_shift_
)
min_options()
(in
SaneMinMover
)
mover_name()
(in
ParsedProtocolCreator
)
maqy
(in
rosetta.core.scoring.rna.chemical_shift
)
min_options()
(in
SymMinMover
)
mover_name()
(in
SavePoseMoverCreator
)
maqz
(in
atomitem
)
min_pack()
(in
rosetta.core.pack._core_pack_
)
mover_name()
(in
RotamerRecoveryMoverCreator
)
maqz
(in
rosetta.core.scoring.rna.chemical_shift._core_scoring_rna_chemical_shift_
)
min_pack_optimize()
(in
rosetta.core.pack._core_pack_
)
mover_name()
(in
CAcstGeneratorCreator
)
maqz
(in
rosetta.core.scoring.rna.chemical_shift
)
min_pack_place_opt_rotamers_on_pose()
(in
rosetta.core.pack._core_pack_
)
mover_name()
(in
CloseFoldCreator
)
mark()
(in
ComparisonGrid
)
min_pack_setup()
(in
rosetta.core.pack._core_pack_
)
mover_name()
(in
CoordinateCstCreator
)
mark()
(in
PocketGrid
)
min_pair_data
(in
rosetta.core.scoring._core_scoring_
)
mover_name()
(in
DefineMovableLoopsCreator
)
mark_as_cancelled()
(in
Batch
)
min_pair_data_type()
(in
AnalyticEtableEnergy
)
mover_name()
(in
GrowPeptidesCreator
)
mark_as_default()
(in
PerturberSet
)
min_pair_data_type()
(in
BaseEtableEnergy_T_core_scoring_etable_AnalyticEtableEnergy_T
)
mover_name()
(in
SeedFoldTreeCreator
)
mark_as_default()
(in
LoopProtocol
)
min_pair_data_type()
(in
BaseEtableEnergy_T_core_scoring_etable_TableLookupEtableEnergy_T
)
mover_name()
(in
SeedSetupMoverCreator
)
mark_as_default()
(in
LoopMoverGroup
)
min_pair_data_type()
(in
TableLookupEtableEnergy
)
mover_name()
(in
SegmentHybridizerCreator
)
mark_as_finished()
(in
Batch
)
min_pos()
(in
FragSet
)
mover_name()
(in
SwapSegmentCreator
)
mark_as_invalid()
(in
Batch
)
min_rb()
(in
CDRGraftDesignOptions
)
mover_name()
(in
AddChainMoverCreator
)
mark_as_processed()
(in
SimulateMPIMessage
)
min_rb()
(in
DesignRepackMover
)
mover_name()
(in
AddConstraintsToCurrentConformationMoverCreator
)
mark_as_test_run()
(in
LoopProtocol
)
min_rb_set()
(in
DesignRepackMover
)
mover_name()
(in
AddJobPairDataCreator
)
mark_atom_espGrid_points()
(in
ElectrostaticpotentialGrid
)
min_residue_count()
(in
ResidueCountFilter
)
mover_name()
(in
AlignChainMoverCreator
)
mark_buried_solvent_points()
(in
ElectrostaticpotentialGrid
)
min_rms()
(in
FastGapMover
)
mover_name()
(in
BBGaussianMoverCreator
)
mark_current_job_id_for_repetition()
(in
FileSystemJobDistributor
)
min_rms()
(in
LoopHashDiversifier
)
mover_name()
(in
BoltzmannRotamerMoverCreator
)
mark_current_job_id_for_repetition()
(in
MPIFileBufJobDistributor
)
min_rms()
(in
LoopHashMoverWrapper
)
mover_name()
(in
ChangeAndResetFoldTreeMoverCreator
)
mark_current_job_id_for_repetition()
(in
MPIWorkPartitionJobDistributor
)
min_rotamers()
(in
rosetta.protocols.make_rot_lib._protocols_make_rot_lib_
)
mover_name()
(in
ClearConstraintsMoverCreator
)
mark_current_job_id_for_repetition()
(in
MPIWorkPoolJobDistributor
)
min_sc()
(in
CDRGraftDesignOptions
)
mover_name()
(in
ConsensusDesignMoverCreator
)
mark_current_job_id_for_repetition()
(in
MSDJobDistributor
)
min_sc()
(in
DesignRepackMover
)
mover_name()
(in
ConstraintSetMoverCreator
)
mark_current_job_id_for_repetition()
(in
ShuffleFileSystemJobDistributor
)
min_sc_set()
(in
DesignRepackMover
)
mover_name()
(in
ContingentAcceptMoverCreator
)
mark_designable()
(in
DatabaseThread
)
min_seq_sep()
(in
AddConstraintsToCurrentConformationMover
)
mover_name()
(in
CoupledMoverCreator
)
mark_energies_computed()
(in
EnergyEdge
)
min_single_data
(in
rosetta.core.scoring._core_scoring_
)
mover_name()
(in
CutChainMoverCreator
)
mark_energies_uncomputed()
(in
EnergyEdge
)
min_single_data_type()
(in
AnalyticEtableEnergy
)
mover_name()
(in
DeleteChainsMoverCreator
)
mark_energy_computed()
(in
DenseNeighborIterator
)
min_single_data_type()
(in
BaseEtableEnergy_T_core_scoring_etable_AnalyticEtableEnergy_T
)
mover_name()
(in
DumpPdbCreator
)
mark_energy_computed()
(in
OneToAllNeighborIterator
)
min_single_data_type()
(in
BaseEtableEnergy_T_core_scoring_etable_TableLookupEtableEnergy_T
)
mover_name()
(in
ExtendedPoseMoverCreator
)
mark_energy_computed()
(in
PeptideBondedNeighborIterator
)
min_single_data_type()
(in
TableLookupEtableEnergy
)
mover_name()
(in
FavorSequenceProfileCreator
)
mark_energy_computed()
(in
ResidueNeighborIterator
)
min_tolerance()
(in
StepWiseBasicOptions
)
mover_name()
(in
FavorSymmetricSequenceCreator
)
mark_energy_computed()
(in
CstResNeighbIterator
)
min_type()
(in
MinimizerOptions
)
mover_name()
(in
FindConsensusSequenceCreator
)
mark_energy_computed()
(in
CentroidDisulfideEnergyContainer
)
min_type()
(in
DnaInterfaceMinMover
)
mover_name()
(in
ForceDisulfidesMoverCreator
)
mark_energy_computed()
(in
CentroidDisulfideNeighborIterator
)
min_type()
(in
RelaxProtocolBase
)
mover_name()
(in
GenericMonteCarloMoverCreator
)
mark_energy_computed()
(in
DisulfResNeighbIterator
)
min_type()
(in
MinMover
)
mover_name()
(in
LoadPDBMoverCreator
)
mark_energy_computed()
(in
DisulfideMatchingEnergyContainer
)
min_type()
(in
SymMinMover
)
mover_name()
(in
LoadUnboundRotMoverCreator
)
mark_energy_computed()
(in
DisulfideMatchingNeighborIterator
)
min_type()
(in
StepWiseBasicOptions
)
mover_name()
(in
MSDMoverCreator
)
mark_energy_computed()
(in
FullatomDisulfideEnergyContainer
)
min_val()
(in
Polynomial_1d
)
mover_name()
(in
MakePolyXMoverCreator
)
mark_energy_uncomputed()
(in
DenseNeighborIterator
)
min_value()
(in
PSSM2BfactorMover
)
mover_name()
(in
MembraneTopologyCreator
)
mark_energy_uncomputed()
(in
OneToAllNeighborIterator
)
MinExpression
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
mover_name()
(in
MinMoverCreator
)
mark_energy_uncomputed()
(in
PeptideBondedNeighborIterator
)
MinExpressionAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
mover_name()
(in
MinPackMoverCreator
)
mark_energy_uncomputed()
(in
ResidueNeighborIterator
)
MinExpressionCAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
mover_name()
(in
MonteCarloRecoverCreator
)
mark_energy_uncomputed()
(in
CstResNeighbIterator
)
mini_pose()
(in
ChunkSet
)
mover_name()
(in
MonteCarloResetCreator
)
mark_energy_uncomputed()
(in
CentroidDisulfideEnergyContainer
)
mini_pose_list()
(in
BasePairStepLibrary
)
mover_name()
(in
MonteCarloTestCreator
)
mark_energy_uncomputed()
(in
CentroidDisulfideNeighborIterator
)
MinimalistFlexbbEdge
(in
rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
)
mover_name()
(in
MutateResidueCreator
)
mark_energy_uncomputed()
(in
DisulfResNeighbIterator
)
MinimalistFlexbbEdgeAP
(in
rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
)
mover_name()
(in
PDBReloadMoverCreator
)
mark_energy_uncomputed()
(in
DisulfideMatchingEnergyContainer
)
MinimalistFlexbbEdgeCAP
(in
rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
)
mover_name()
(in
PSSM2BfactorMoverCreator
)
mark_energy_uncomputed()
(in
DisulfideMatchingNeighborIterator
)
MinimalistFlexbbInteractionGraph
(in
rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
)
mover_name()
(in
PackRotamersMoverCreator
)
mark_energy_uncomputed()
(in
FullatomDisulfideEnergyContainer
)
MinimalistFlexbbInteractionGraphAP
(in
rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
)
mover_name()
(in
PackRotamersMoverLazyCreator
)
mark_entity_as_unimportant()
(in
DaemonSet
)
MinimalistFlexbbInteractionGraphCAP
(in
rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
)
mover_name()
(in
PeriodicBoxMoverCreator
)
mark_entity_as_unimportant()
(in
PackDaemon
)
MinimalistFlexbbNode
(in
rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
)
mover_name()
(in
RandomOmegaFlipMoverCreator
)
mark_incomplete()
(in
ResConnID
)
MinimalistFlexbbNodeAP
(in
rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
)
mover_name()
(in
RandomTorsionMoverCreator
)
mark_job_tag_as_complete()
(in
LazyResourceManager
)
MinimalistFlexbbNodeCAP
(in
rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
)
mover_name()
(in
RepackSidechainsMoverCreator
)
mark_last_entity_as_important()
(in
DaemonSet
)
MinimalRotamer
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
mover_name()
(in
RepeatPropagationMoverCreator
)
mark_last_entity_as_important()
(in
PackDaemon
)
MinimalRotamerAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
mover_name()
(in
ReportEffectivePKACreator
)
mark_leave_as_is()
(in
DatabaseThread
)
MinimalRotamerCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
mover_name()
(in
ResetBaselineMoverCreator
)
mark_protein_espGrid_points()
(in
ElectrostaticpotentialGrid
)
minimization_graph()
(in
Energies
)
mover_name()
(in
ResidueTypeConstraintMoverCreator
)
mark_residue_moved()
(in
ResidueCoordinateChangeList
)
minimization_score_function()
(in
ddGMover
)
mover_name()
(in
RingConformationMoverCreator
)
mark_structure_as_sampled()
(in
StructureFeatures
)
MinimizationEdge
(in
rosetta.core.scoring._core_scoring_
)
mover_name()
(in
RotamerTrialsMinMoverCreator
)
mark_tags()
(in
KClusterData
)
MinimizationEdgeAP
(in
rosetta.core.scoring._core_scoring_
)
mover_name()
(in
RotamerTrialsMoverCreator
)
markChangedResid()
(in
VallLookbackFragMover
)
MinimizationEdgeCAP
(in
rosetta.core.scoring._core_scoring_
)
mover_name()
(in
SaneMinMoverCreator
)
markDepth()
(in
PocketGrid
)
MinimizationGraph
(in
rosetta.core.scoring._core_scoring_
)
mover_name()
(in
ScoreMoverCreator
)
markEdgeDepth()
(in
PocketGrid
)
MinimizationGraphAP
(in
rosetta.core.scoring._core_scoring_
)
mover_name()
(in
SequenceProfileMoverCreator
)
markOneEdgeDepth()
(in
PocketGrid
)
MinimizationGraphCAP
(in
rosetta.core.scoring._core_scoring_
)
mover_name()
(in
SetTorsionCreator
)
markPocketDepth()
(in
PocketGrid
)
MinimizationNode
(in
rosetta.core.scoring._core_scoring_
)
mover_name()
(in
ShearMoverCreator
)
Martin
(in
rosetta.protocols.antibody
)
MinimizationNodeAP
(in
rosetta.core.scoring._core_scoring_
)
mover_name()
(in
ShortBackrubMoverCreator
)
Martin
(in
CDRDefinitionEnum
)
MinimizationNodeCAP
(in
rosetta.core.scoring._core_scoring_
)
mover_name()
(in
SmallMoverCreator
)
Martin
(in
rosetta.protocols.antibody._protocols_antibody_
)
MinimizationRefiner
(in
rosetta.protocols.loop_modeling.refiners._protocols_loop_modeling_refiners_
)
mover_name()
(in
SuperimposeMoverCreator
)
marx
(in
atomitem
)
MinimizationRefinerAP
(in
rosetta.protocols.loop_modeling.refiners._protocols_loop_modeling_refiners_
)
mover_name()
(in
SwitchChainOrderMoverCreator
)
marx
(in
rosetta.core.scoring.rna.chemical_shift._core_scoring_rna_chemical_shift_
)
MinimizationRefinerCAP
(in
rosetta.protocols.loop_modeling.refiners._protocols_loop_modeling_refiners_
)
mover_name()
(in
SwitchResidueTypeSetMoverCreator
)
marx
(in
rosetta.core.scoring.rna.chemical_shift
)
MinimizationRefinerCreator
(in
rosetta.protocols.loop_modeling.refiners._protocols_loop_modeling_refiners_
)
mover_name()
(in
TaskAwareMinMoverCreator
)
mary
(in
atomitem
)
MinimizationRefinerCreatorAP
(in
rosetta.protocols.loop_modeling.refiners._protocols_loop_modeling_refiners_
)
mover_name()
(in
TumbleCreator
)
mary
(in
rosetta.core.scoring.rna.chemical_shift._core_scoring_rna_chemical_shift_
)
MinimizationRefinerCreatorCAP
(in
rosetta.protocols.loop_modeling.refiners._protocols_loop_modeling_refiners_
)
mover_name()
(in
VirtualRootMoverCreator
)
mary
(in
rosetta.core.scoring.rna.chemical_shift
)
minimize
(in
MinTypeEnum
)
mover_name()
(in
ddGCreator
)
marz
(in
atomitem
)
minimize
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
mover_name()
(in
InitializeByBinsCreator
)
marz
(in
rosetta.core.scoring.rna.chemical_shift._core_scoring_rna_chemical_shift_
)
minimize
(in
rosetta.protocols.antibody.design
)
mover_name()
(in
PerturbByBinsCreator
)
marz
(in
rosetta.core.scoring.rna.chemical_shift
)
minimize()
(in
LigandMotifSearch
)
mover_name()
(in
JumpRotamerSidechainMoverCreator
)
mask()
(in
SetupForDensityScoringMover
)
minimize()
(in
MotifSearch
)
mover_name()
(in
PerturbChiSidechainMoverCreator
)
maskResidues()
(in
ElectronDensity
)
minimize_after_delete()
(in
DeleteMover
)
mover_name()
(in
PerturbRotamerSidechainMoverCreator
)
Mass
(in
Element
)
minimize_after_delete()
(in
StepWiseMonteCarloOptions
)
mover_name()
(in
SetChiMoverCreator
)
Mass
(in
Properties
)
minimize_all()
(in
PlaceSimultaneouslyMover
)
mover_name()
(in
SidechainMCMoverCreator
)
mass()
(in
ResidueType
)
minimize_all_rotamers()
(in
MakeRotLibMover
)
mover_name()
(in
SidechainMoverCreator
)
mass()
(in
rosetta.core.pose._core_pose_
)
minimize_all_sampled_floating_bases()
(in
rosetta.protocols.stepwise.modeler.rna.sugar._protocols_stepwise_modeler_rna_sugar_
)
mover_name()
(in
DetectSymmetryMoverCreator
)
master()
(in
ConformationKinWriter
)
minimize_and_score_native_pose()
(in
StepWiseRNA_ModelerOptions
)
mover_name()
(in
ExtractAsymmetricPoseMoverCreator
)
master()
(in
ResidueKinWriter
)
minimize_and_score_sugar()
(in
StepWiseRNA_ModelerOptions
)
mover_name()
(in
ExtractAsymmetricUnitMoverCreator
)
master()
(in
ResidueKinemageWriter
)
minimize_backbone()
(in
MoveMapBuilder
)
mover_name()
(in
SetupForSymmetryMoverCreator
)
master()
(in
WorkUnit
)
minimize_bond_angles()
(in
RelaxProtocolBase
)
mover_name()
(in
SetupNCSMoverCreator
)
MASTER_PROCESS_NEW_STRUCTURES
(in
rosetta.basic
)
minimize_bond_lengths()
(in
RelaxProtocolBase
)
mover_name()
(in
SymMinMoverCreator
)
MASTER_PROCESS_NEW_STRUCTURES
(in
rosetta.basic._basic_
)
minimize_cartesian
(in
MinTypeEnum
)
mover_name()
(in
SymPackRotamersMoverCreator
)
MASTER_PROCESS_NEW_STRUCTURES
(in
ProfTag
)
minimize_cartesian
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
mover_name()
(in
SymRotamerTrialsMoverCreator
)
master_weight()
(in
EnergiesData
)
minimize_cartesian
(in
rosetta.protocols.antibody.design
)
mover_name()
(in
TaskAwareSymMinMoverCreator
)
master_weight_vector()
(in
DecomposeAndReweightEnergiesCalculator
)
minimize_cdrs()
(in
AntibodyDesignModeler
)
mover_name()
(in
SymDockProtocolCreator
)
match
(in
rosetta.protocols
)
minimize_conformation()
(in
VIP_Mover
)
mover_name()
(in
SymFoldandDockMoveRbJumpMoverCreator
)
MATCH_AA
(in
rosetta.core.scoring.motif
)
minimize_in_whole_structure_context()
(in
DunbrackEnergy
)
mover_name()
(in
SymFoldandDockRbTrialMoverCreator
)
MATCH_AA
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
minimize_in_whole_structure_context()
(in
CenRotDunEnergy
)
mover_name()
(in
SymFoldandDockSlideTrialMoverCreator
)
MATCH_AA
(in
MotifMatchOverlapReq
)
minimize_in_whole_structure_context()
(in
HPatchEnergy
)
mover_name()
(in
MPSymDockMoverCreator
)
match_aa1()
(in
ResPairMotifQuery
)
minimize_in_whole_structure_context()
(in
SurfaceEnergy
)
mover_name()
(in
StoreCombinedStoredTasksMoverCreator
)
match_aa2()
(in
ResPairMotifQuery
)
minimize_in_whole_structure_context()
(in
CarbonHBondEnergy
)
mover_name()
(in
StoreCompoundTaskMoverCreator
)
MATCH_ALL
(in
rosetta.protocols.farna
)
minimize_in_whole_structure_context()
(in
ConstraintsEnergy
)
mover_name()
(in
StoreTaskMoverCreator
)
MATCH_ALL
(in
rosetta.protocols.farna._protocols_farna_
)
minimize_in_whole_structure_context()
(in
XtalMLEnergy
)
mover_stopping_condition()
(in
GenericMonteCarloMover
)
MATCH_ALL
(in
_RNA_MatchType_
)
minimize_in_whole_structure_context()
(in
FullatomCustomPairDistanceEnergy
)
mover_weight()
(in
TopologyClaimer
)
MATCH_ANY
(in
rosetta.core.scoring.motif
)
minimize_in_whole_structure_context()
(in
CentroidDisulfideEnergy
)
MoverAP
(in
rosetta.protocols.moves._protocols_moves_
)
MATCH_ANY
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
minimize_in_whole_structure_context()
(in
DisulfideMatchingEnergy
)
MoverApplyingMover
(in
rosetta.protocols.moves._protocols_moves_
)
MATCH_ANY
(in
MotifMatchOverlapReq
)
minimize_in_whole_structure_context()
(in
FullatomDisulfideEnergy
)
MoverApplyingMoverAP
(in
rosetta.protocols.moves._protocols_moves_
)
match_chi_rmsd()
(in
ResPairMotifQuery
)
minimize_in_whole_structure_context()
(in
DNAChiEnergy
)
MoverApplyingMoverCAP
(in
rosetta.protocols.moves._protocols_moves_
)
match_dspos1
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
DNATorsionEnergy
)
MoverCAP
(in
rosetta.protocols.moves._protocols_moves_
)
match_dspos1AP
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
FA_ElecEnergy
)
MoverContainer
(in
rosetta.protocols.moves._protocols_moves_
)
match_dspos1CAP
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
FA_ElecEnergyAroAll
)
MoverContainerAP
(in
rosetta.protocols.moves._protocols_moves_
)
match_enzdes_util
(in
rosetta.protocols.toolbox
)
minimize_in_whole_structure_context()
(in
FA_ElecEnergyAroAro
)
MoverContainerCAP
(in
rosetta.protocols.moves._protocols_moves_
)
MATCH_EXACT
(in
rosetta.protocols.farna
)
minimize_in_whole_structure_context()
(in
FA_GrpElecEnergy
)
MoverCreator
(in
rosetta.protocols.moves._protocols_moves_
)
MATCH_EXACT
(in
rosetta.protocols.farna._protocols_farna_
)
minimize_in_whole_structure_context()
(in
RNA_FA_ElecEnergy
)
MoverCreatorAP
(in
rosetta.protocols.moves._protocols_moves_
)
MATCH_EXACT
(in
_RNA_MatchType_
)
minimize_in_whole_structure_context()
(in
ElecDensAllAtomCenEnergy
)
MoverCreatorCAP
(in
rosetta.protocols.moves._protocols_moves_
)
match_fragment()
(in
ElectronDensity
)
minimize_in_whole_structure_context()
(in
ElecDensCenEnergy
)
MoverFactory
(in
rosetta.protocols.moves._protocols_moves_
)
match_groups_dshits()
(in
CloudPDBWriter
)
minimize_in_whole_structure_context()
(in
ElecDensEnergy
)
MoverFactoryAP
(in
rosetta.protocols.moves._protocols_moves_
)
match_groups_ushits()
(in
CloudPDBWriter
)
minimize_in_whole_structure_context()
(in
FastDensEnergy
)
MoverFactoryCAP
(in
rosetta.protocols.moves._protocols_moves_
)
match_has_been_output()
(in
MatchOutputTracker
)
minimize_in_whole_structure_context()
(in
PattersonCorrEnergy
)
MoverForPoseList
(in
rosetta.protocols.moves._protocols_moves_
)
MATCH_HYDROPHOBICITY
(in
rosetta.core.scoring.motif
)
minimize_in_whole_structure_context()
(in
ElecDensAtomwiseEnergy
)
MoverForPoseListAP
(in
rosetta.protocols.moves._protocols_moves_
)
MATCH_HYDROPHOBICITY
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
minimize_in_whole_structure_context()
(in
AnalyticEtableEnergy
)
MoverForPoseListCAP
(in
rosetta.protocols.moves._protocols_moves_
)
MATCH_HYDROPHOBICITY
(in
MotifMatchOverlapReq
)
minimize_in_whole_structure_context()
(in
BaseEtableEnergy_T_core_scoring_etable_AnalyticEtableEnergy_T
)
moverkey()
(in
FragmentJumpCM
)
match_lite_equals
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
BaseEtableEnergy_T_core_scoring_etable_TableLookupEtableEnergy_T
)
moverkey()
(in
JumpSampleData
)
match_lite_equalsAP
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
TableLookupEtableEnergy
)
MoverList
(in
rosetta.protocols.wum._protocols_wum_
)
match_lite_equalsCAP
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
FiberDiffractionEnergy
)
MoverListAP
(in
rosetta.protocols.wum._protocols_wum_
)
match_lite_hasher
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
FiberDiffractionEnergyDens
)
MoverListCAP
(in
rosetta.protocols.wum._protocols_wum_
)
match_lite_hasherAP
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
ContextDependentGeometricSolEnergy
)
movers
(in
rosetta.protocols.denovo_design
)
match_lite_hasherCAP
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
ContextIndependentGeometricSolEnergy
)
movers
(in
rosetta.protocols.hotspot_hashing
)
match_possible_for_hit_geometry()
(in
OccupiedSpaceHash
)
minimize_in_whole_structure_context()
(in
ExactOccludedHbondSolEnergy
)
movers
(in
rosetta.protocols.motif_grafting
)
match_processing_successful()
(in
MatchProcessor
)
minimize_in_whole_structure_context()
(in
OccludedHbondSolEnergy
)
movers
(in
rosetta.protocols.protein_interface_design
)
match_radius()
(in
ResPairMotifQuery
)
minimize_in_whole_structure_context()
(in
OccludedHbondSolEnergy_onebody
)
movers()
(in
MoverContainer
)
MATCH_ROTAMER
(in
rosetta.core.scoring.motif
)
minimize_in_whole_structure_context()
(in
HackAroEnergy
)
MoverStatistics
(in
rosetta.protocols.moves._protocols_moves_
)
MATCH_ROTAMER
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
minimize_in_whole_structure_context()
(in
HBondEnergy
)
MoverStatisticsAP
(in
rosetta.protocols.moves._protocols_moves_
)
MATCH_ROTAMER
(in
MotifMatchOverlapReq
)
minimize_in_whole_structure_context()
(in
DDPscore
)
MoverStatisticsCAP
(in
rosetta.protocols.moves._protocols_moves_
)
match_score()
(in
SimpleScoringScheme
)
minimize_in_whole_structure_context()
(in
LoopCloseEnergy
)
MoverStatus
(in
rosetta.protocols.moves._protocols_moves_
)
match_ss1()
(in
ResPairMotifQuery
)
minimize_in_whole_structure_context()
(in
FaMPEnvEnergy
)
moves
(in
rosetta.protocols
)
match_ss2()
(in
ResPairMotifQuery
)
minimize_in_whole_structure_context()
(in
FaMPEnvSmoothEnergy
)
moves_residue()
(in
Frame
)
match_variants()
(in
ResidueSelector
)
minimize_in_whole_structure_context()
(in
FaMPSolvEnergy
)
moves_residue()
(in
JumpingFrame
)
match_variants()
(in
ProtectedConformation
)
minimize_in_whole_structure_context()
(in
MPCbetaEnergy
)
moves_residue()
(in
NonContinuousFrame
)
MATCH_YR
(in
rosetta.protocols.farna
)
minimize_in_whole_structure_context()
(in
MPEnvEnergy
)
MoveType
(in
rosetta.protocols.stepwise.monte_carlo.mover._protocols_stepwise_monte_carlo_mover_
)
MATCH_YR
(in
rosetta.protocols.farna._protocols_farna_
)
minimize_in_whole_structure_context()
(in
MPLipoEnergy
)
moving_partition_res()
(in
MultiPhosphateSampler
)
MATCH_YR
(in
_RNA_MatchType_
)
minimize_in_whole_structure_context()
(in
MPNonHelixPenalty
)
moving_partition_res()
(in
RigidBodyStepWiseSampler
)
matchCentroidPose()
(in
ElectronDensity
)
minimize_in_whole_structure_context()
(in
MPPairEnergy
)
moving_res()
(in
StepWiseBasicWorkingParameters
)
MatchCollisionFilter
(in
rosetta.protocols.match.output._protocols_match_output_
)
minimize_in_whole_structure_context()
(in
MPTMProjPenalty
)
moving_res()
(in
StepWiseMove
)
MatchCollisionFilterAP
(in
rosetta.protocols.match.output._protocols_match_output_
)
minimize_in_whole_structure_context()
(in
MPTerminiPenalty
)
moving_res()
(in
RigidBodyStepWiseSampler
)
MatchCollisionFilterCAP
(in
rosetta.protocols.match.output._protocols_match_output_
)
minimize_in_whole_structure_context()
(in
BurialEnergy
)
moving_residue_at_origin()
(in
RigidBodyStepWiseSampler
)
MatchConsolidator
(in
rosetta.protocols.match.output._protocols_match_output_
)
minimize_in_whole_structure_context()
(in
CartesianBondedEnergy
)
Mpair
(in
rosetta
)
MatchConsolidatorAP
(in
rosetta.protocols.match.output._protocols_match_output_
)
minimize_in_whole_structure_context()
(in
CenHBEnergy
)
Mpair
(in
rosetta.core.scoring
)
MatchConsolidatorCAP
(in
rosetta.protocols.match.output._protocols_match_output_
)
minimize_in_whole_structure_context()
(in
CenPairEnergy
)
Mpair
(in
rosetta.core.scoring._core_scoring_
)
MatchConstraintFileInfo
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
minimize_in_whole_structure_context()
(in
CenRotEnvEnergy
)
Mpair
(in
ScoreType
)
MatchConstraintFileInfoAP
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
minimize_in_whole_structure_context()
(in
CenRotPairEnergy
)
MPCbeta
(in
rosetta
)
MatchConstraintFileInfoCAP
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
minimize_in_whole_structure_context()
(in
ChainbreakEnergy
)
MPCbeta
(in
rosetta.core.scoring
)
MatchConstraintFileInfoList
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
minimize_in_whole_structure_context()
(in
ChemicalShiftAnisotropyEnergy
)
MPCbeta
(in
rosetta.core.scoring._core_scoring_
)
MatchConstraintFileInfoListAP
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
minimize_in_whole_structure_context()
(in
ContactOrderEnergy
)
MPCbeta
(in
ScoreType
)
MatchConstraintFileInfoListCAP
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
minimize_in_whole_structure_context()
(in
ContextDependentLRTwoBodyEnergy
)
MPCbetaEnergy
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MatchCounter
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
ContextDependentOneBodyEnergy
)
MPCbetaEnergyAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MatchCounterAP
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
ContextDependentTwoBodyEnergy
)
MPCbetaEnergyCAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MatchCounterCAP
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
ContextIndependentLRTwoBodyEnergy
)
MPCbetaEnergyCreator
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
matched_tags()
(in
SilentFileData
)
minimize_in_whole_structure_context()
(in
ContextIndependentOneBodyEnergy
)
MPCbetaEnergyCreatorAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
Matcher
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
ContextIndependentTwoBodyEnergy
)
MPCbetaEnergyCreatorCAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MatcherAP
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
CustomAtomPairEnergy
)
MPDockingMover
(in
rosetta.protocols.docking.membrane._protocols_docking_membrane_
)
MatcherCAP
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
D2H_SA_Energy
)
MPDockingMoverAP
(in
rosetta.protocols.docking.membrane._protocols_docking_membrane_
)
MatcherMover
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
DNA_BaseEnergy
)
MPDockingMoverCAP
(in
rosetta.protocols.docking.membrane._protocols_docking_membrane_
)
MatcherMoverAP
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
DipolarCouplingEnergy
)
MPDockingMoverCreator
(in
rosetta.protocols.docking.membrane._protocols_docking_membrane_
)
MatcherMoverCAP
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
DirectReadoutEnergy
)
MPDockingMoverCreatorAP
(in
rosetta.protocols.docking.membrane._protocols_docking_membrane_
)
MatcherMoverCreator
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
DistanceChainbreakEnergy
)
MPDockingMoverCreatorCAP
(in
rosetta.protocols.docking.membrane._protocols_docking_membrane_
)
MatcherMoverCreatorAP
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
EnergyMethod
)
MPDockingSetupMover
(in
rosetta.protocols.docking.membrane._protocols_docking_membrane_
)
MatcherMoverCreatorCAP
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
EnvEnergy
)
MPDockingSetupMoverAP
(in
rosetta.protocols.docking.membrane._protocols_docking_membrane_
)
MatcherOutputStats
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
EnvSmoothEnergy
)
MPDockingSetupMoverCAP
(in
rosetta.protocols.docking.membrane._protocols_docking_membrane_
)
MatcherOutputStatsAP
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
Fa_MbenvEnergy
)
MPDockingSetupMoverCreator
(in
rosetta.protocols.docking.membrane._protocols_docking_membrane_
)
MatcherOutputStatsCAP
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
Fa_MbsolvEnergy
)
MPDockingSetupMoverCreatorAP
(in
rosetta.protocols.docking.membrane._protocols_docking_membrane_
)
MatcherTask
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
FreeDOF_Energy
)
MPDockingSetupMoverCreatorCAP
(in
rosetta.protocols.docking.membrane._protocols_docking_membrane_
)
MatcherTaskAP
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
GaussianOverlapEnergy
)
MPEnv
(in
rosetta
)
MatcherTaskCAP
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
GenBornEnergy
)
MPEnv
(in
rosetta.core.scoring
)
matches()
(in
CstEnergyContainer
)
minimize_in_whole_structure_context()
(in
GoapEnergy
)
MPEnv
(in
rosetta.core.scoring._core_scoring_
)
matches_residue_type()
(in
LKB_ResidueInfo
)
minimize_in_whole_structure_context()
(in
HybridVDW_Energy
)
MPEnv
(in
ScoreType
)
MatchEvaluator
(in
rosetta.protocols.match.output._protocols_match_output_
)
minimize_in_whole_structure_context()
(in
IntermolEnergy
)
MPEnvEnergy
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MatchEvaluatorAP
(in
rosetta.protocols.match.output._protocols_match_output_
)
minimize_in_whole_structure_context()
(in
LK_BallEnergy
)
MPEnvEnergyAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MatchEvaluatorCAP
(in
rosetta.protocols.match.output._protocols_match_output_
)
minimize_in_whole_structure_context()
(in
LK_PolarNonPolarEnergy
)
MPEnvEnergyCAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MatchFilter
(in
rosetta.protocols.match.output._protocols_match_output_
)
minimize_in_whole_structure_context()
(in
LK_hack
)
MPEnvEnergyCreator
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MatchFilterAP
(in
rosetta.protocols.match.output._protocols_match_output_
)
minimize_in_whole_structure_context()
(in
LinearChainbreakEnergy
)
MPEnvEnergyCreatorAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MatchFilterCAP
(in
rosetta.protocols.match.output._protocols_match_output_
)
minimize_in_whole_structure_context()
(in
LongRangeTwoBodyEnergy
)
MPEnvEnergyCreatorCAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MatchGrafter
(in
rosetta.protocols.metal_interface._protocols_metal_interface_
)
minimize_in_whole_structure_context()
(in
MMBondAngleEnergy
)
MPFastRelaxMover
(in
rosetta.protocols.relax.membrane._protocols_relax_membrane_
)
MatchGrafterAP
(in
rosetta.protocols.metal_interface._protocols_metal_interface_
)
minimize_in_whole_structure_context()
(in
MMBondLengthEnergy
)
MPFastRelaxMoverAP
(in
rosetta.protocols.relax.membrane._protocols_relax_membrane_
)
MatchGrafterCAP
(in
rosetta.protocols.metal_interface._protocols_metal_interface_
)
minimize_in_whole_structure_context()
(in
MMLJEnergyInter
)
MPFastRelaxMoverCAP
(in
rosetta.protocols.relax.membrane._protocols_relax_membrane_
)
MatchGrouper
(in
rosetta.protocols.match.output._protocols_match_output_
)
minimize_in_whole_structure_context()
(in
MMLJEnergyIntra
)
MPFastRelaxMoverCreator
(in
rosetta.protocols.relax.membrane._protocols_relax_membrane_
)
MatchGrouperAP
(in
rosetta.protocols.match.output._protocols_match_output_
)
minimize_in_whole_structure_context()
(in
MMTorsionEnergy
)
MPFastRelaxMoverCreatorAP
(in
rosetta.protocols.relax.membrane._protocols_relax_membrane_
)
MatchGrouperCAP
(in
rosetta.protocols.match.output._protocols_match_output_
)
minimize_in_whole_structure_context()
(in
MembraneCbetaEnergy
)
MPFastRelaxMoverCreatorCAP
(in
rosetta.protocols.relax.membrane._protocols_relax_membrane_
)
MatchOutputter
(in
rosetta.protocols.match.output._protocols_match_output_
)
minimize_in_whole_structure_context()
(in
MembraneCenPairEnergy
)
mphbond()
(in
HBondOptions
)
MatchOutputterAP
(in
rosetta.protocols.match.output._protocols_match_output_
)
minimize_in_whole_structure_context()
(in
MembraneEnvEnergy
)
MPI_FILE_BUF
(in
rosetta.basic
)
MatchOutputterCAP
(in
rosetta.protocols.match.output._protocols_match_output_
)
minimize_in_whole_structure_context()
(in
MembraneEnvPenalties
)
MPI_FILE_BUF
(in
rosetta.basic._basic_
)
MatchOutputTracker
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
MembraneEnvSmoothEnergy
)
MPI_FILE_BUF
(in
ProfTag
)
MatchOutputTrackerAP
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
MembraneLipo
)
mpi_finalize()
(in
JobDistributor
)
MatchOutputTrackerCAP
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
MissingEnergy
)
mpi_finalize()
(in
MPIWorkPoolJobDistributor
)
matchPointFast()
(in
ElectronDensity
)
minimize_in_whole_structure_context()
(in
NMerPSSMEnergy
)
MPI_GATHER_BARRIER
(in
rosetta.basic
)
matchPose()
(in
ElectronDensity
)
minimize_in_whole_structure_context()
(in
NMerRefEnergy
)
MPI_GATHER_BARRIER
(in
rosetta.basic._basic_
)
matchPoseToPatterson()
(in
ElectronDensity
)
minimize_in_whole_structure_context()
(in
NMerSVMEnergy
)
MPI_GATHER_BARRIER
(in
ProfTag
)
MatchPositionModifier
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
OmegaTetherEnergy
)
mpi_init()
(in
rosetta
)
MatchPositionModifierAP
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
OneBodyEnergy
)
MPI_JD2_WAITS_FOR_ARCHIVE
(in
rosetta.basic
)
MatchPositionModifierCAP
(in
rosetta.protocols.match._protocols_match_
)
minimize_in_whole_structure_context()
(in
OtherPoseEnergy
)
MPI_JD2_WAITS_FOR_ARCHIVE
(in
rosetta.basic._basic_
)
MatchProcessor
(in
rosetta.protocols.match.output._protocols_match_output_
)
minimize_in_whole_structure_context()
(in
P_AA_Energy
)
MPI_JD2_WAITS_FOR_ARCHIVE
(in
ProfTag
)
MatchProcessorAP
(in
rosetta.protocols.match.output._protocols_match_output_
)
minimize_in_whole_structure_context()
(in
P_AA_pp_Energy
)
MPI_LoopHashRefine
(in
rosetta.protocols.loophash._protocols_loophash_
)
MatchProcessorCAP
(in
rosetta.protocols.match.output._protocols_match_output_
)
minimize_in_whole_structure_context()
(in
PackStatEnergy
)
MPI_LoopHashRefine_Emperor
(in
rosetta.protocols.loophash._protocols_loophash_
)
matchRes()
(in
ElectronDensity
)
minimize_in_whole_structure_context()
(in
PairEnergy
)
MPI_LoopHashRefine_EmperorAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
matchResFast()
(in
ElectronDensity
)
minimize_in_whole_structure_context()
(in
PeptideBondEnergy
)
MPI_LoopHashRefine_EmperorCAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
MatchResidues
(in
rosetta.protocols.fldsgn._protocols_fldsgn_
)
minimize_in_whole_structure_context()
(in
PoissonBoltzmannEnergy
)
MPI_LoopHashRefine_Master
(in
rosetta.protocols.loophash._protocols_loophash_
)
MatchResiduesAP
(in
rosetta.protocols.fldsgn._protocols_fldsgn_
)
minimize_in_whole_structure_context()
(in
ProClosureEnergy
)
MPI_LoopHashRefine_MasterAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
MatchResiduesCAP
(in
rosetta.protocols.fldsgn._protocols_fldsgn_
)
minimize_in_whole_structure_context()
(in
ProQ_Energy
)
MPI_LoopHashRefine_MasterCAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
MatchResiduesMover
(in
rosetta.protocols.fldsgn._protocols_fldsgn_
)
minimize_in_whole_structure_context()
(in
RG_Energy_Fast
)
MPI_LoopHashRefineAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
MatchResiduesMoverAP
(in
rosetta.protocols.fldsgn._protocols_fldsgn_
)
minimize_in_whole_structure_context()
(in
RG_LocalEnergy
)
MPI_LoopHashRefineCAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
MatchResiduesMoverCAP
(in
rosetta.protocols.fldsgn._protocols_fldsgn_
)
minimize_in_whole_structure_context()
(in
RMS_Energy
)
MPI_MASTER_BCAST_COORDS
(in
rosetta.basic
)
MatchResiduesMoverCreator
(in
rosetta.protocols.fldsgn._protocols_fldsgn_
)
minimize_in_whole_structure_context()
(in
Rama2BOffsetEnergy
)
MPI_MASTER_BCAST_COORDS
(in
rosetta.basic._basic_
)
MatchResiduesMoverCreatorAP
(in
rosetta.protocols.fldsgn._protocols_fldsgn_
)
minimize_in_whole_structure_context()
(in
RamachandranEnergy
)
MPI_MASTER_BCAST_COORDS
(in
ProfTag
)
MatchResiduesMoverCreatorCAP
(in
rosetta.protocols.fldsgn._protocols_fldsgn_
)
minimize_in_whole_structure_context()
(in
RamachandranEnergy2B
)
MPI_MASTER_BCAST_NEW_COMM_SIZE
(in
rosetta.basic
)
MatchScoreWriter
(in
rosetta.protocols.match.output._protocols_match_output_
)
minimize_in_whole_structure_context()
(in
ReferenceEnergy
)
MPI_MASTER_BCAST_NEW_COMM_SIZE
(in
rosetta.basic._basic_
)
MatchScoreWriterAP
(in
rosetta.protocols.match.output._protocols_match_output_
)
minimize_in_whole_structure_context()
(in
ReferenceEnergyNoncanonical
)
MPI_MASTER_BCAST_NEW_COMM_SIZE
(in
ProfTag
)
MatchScoreWriterCAP
(in
rosetta.protocols.match.output._protocols_match_output_
)
minimize_in_whole_structure_context()
(in
ResidualDipolarCouplingEnergy
)
MPI_MASTER_BCAST_NEW_POOL_RANKS
(in
rosetta.basic
)
matdes
(in
rosetta.protocols
)
minimize_in_whole_structure_context()
(in
ResidualDipolarCouplingEnergy_Rohl
)
MPI_MASTER_BCAST_NEW_POOL_RANKS
(in
rosetta.basic._basic_
)
MatDesGreedyOptMutationMover
(in
rosetta.protocols.matdes._protocols_matdes_
)
minimize_in_whole_structure_context()
(in
SA_Energy
)
MPI_MASTER_BCAST_NEW_POOL_RANKS
(in
ProfTag
)
MatDesGreedyOptMutationMoverAP
(in
rosetta.protocols.matdes._protocols_matdes_
)
minimize_in_whole_structure_context()
(in
SecondaryStructureEnergy
)
MPI_MASTER_BCAST_NUM_STRUCTURES_TO_ADD
(in
rosetta.basic
)
MatDesGreedyOptMutationMoverCAP
(in
rosetta.protocols.matdes._protocols_matdes_
)
minimize_in_whole_structure_context()
(in
SequenceDependentRefEnergy
)
MPI_MASTER_BCAST_NUM_STRUCTURES_TO_ADD
(in
rosetta.basic._basic_
)
MatDesGreedyOptMutationMoverCreator
(in
rosetta.protocols.matdes._protocols_matdes_
)
minimize_in_whole_structure_context()
(in
ShortRangeTwoBodyEnergy
)
MPI_MASTER_BCAST_NUM_STRUCTURES_TO_ADD
(in
ProfTag
)
MatDesGreedyOptMutationMoverCreatorAP
(in
rosetta.protocols.matdes._protocols_matdes_
)
minimize_in_whole_structure_context()
(in
SmoothCenPairEnergy
)
MPI_MASTER_BCAST_WINNING_RANKS
(in
rosetta.basic
)
MatDesGreedyOptMutationMoverCreatorCAP
(in
rosetta.protocols.matdes._protocols_matdes_
)
minimize_in_whole_structure_context()
(in
SmoothEnvEnergy
)
MPI_MASTER_BCAST_WINNING_RANKS
(in
rosetta.basic._basic_
)
MatDesPointMutationCalculator
(in
rosetta.protocols.matdes._protocols_matdes_
)
minimize_in_whole_structure_context()
(in
SuckerEnergy
)
MPI_MASTER_BCAST_WINNING_RANKS
(in
ProfTag
)
MatDesPointMutationCalculatorAP
(in
rosetta.protocols.matdes._protocols_matdes_
)
minimize_in_whole_structure_context()
(in
SymmetricLigandEnergy
)
MPI_MASTER_BCAST_WINNING_STRUCTURES
(in
rosetta.basic
)
MatDesPointMutationCalculatorCAP
(in
rosetta.protocols.matdes._protocols_matdes_
)
minimize_in_whole_structure_context()
(in
TwoBodyEnergy
)
MPI_MASTER_BCAST_WINNING_STRUCTURES
(in
rosetta.basic._basic_
)
matrix()
(in
LAMBEGO_IO
)
minimize_in_whole_structure_context()
(in
UnfoldedStateEnergy
)
MPI_MASTER_BCAST_WINNING_STRUCTURES
(in
ProfTag
)
matrix()
(in
TorsionBinIO
)
minimize_in_whole_structure_context()
(in
WaterAdductHBondEnergy
)
MPI_NOTIFY_ARCHIVE
(in
rosetta.basic
)
matrix3f_to_xyzMatrix()
(in
RepeatParameterFilter
)
minimize_in_whole_structure_context()
(in
WaterAdductIntraEnergy
)
MPI_NOTIFY_ARCHIVE
(in
rosetta.basic._basic_
)
matrix_finalized()
(in
BinTransitionData
)
minimize_in_whole_structure_context()
(in
WholeStructureEnergy
)
MPI_NOTIFY_ARCHIVE
(in
ProfTag
)
matrix_initialized()
(in
BinTransitionData
)
minimize_in_whole_structure_context()
(in
YHHPlanarityEnergy
)
mpi_npes()
(in
rosetta.protocols.wum._protocols_wum_
)
MatrixMult()
(in
rosetta.numeric.model_quality._numeric_model_quality_
)
minimize_in_whole_structure_context()
(in
pHEnergy
)
mpi_nprocs()
(in
SimulateMPI
)
MatrixScoringScheme
(in
rosetta.core.sequence._core_sequence_
)
minimize_in_whole_structure_context()
(in
SugarBackboneEnergy
)
mpi_nprocs()
(in
SimulateMPIData
)
MatrixScoringSchemeAP
(in
rosetta.core.sequence._core_sequence_
)
minimize_in_whole_structure_context()
(in
DFIRE_Energy
)
mpi_nprocs()
(in
rosetta.utility._utility_
)
MatrixScoringSchemeCAP
(in
rosetta.core.sequence._core_sequence_
)
minimize_in_whole_structure_context()
(in
NVscore
)
MPI_POOL_MASTER_THINKS
(in
rosetta.basic
)
MAX
(in
rosetta.protocols.simple_filters
)
minimize_in_whole_structure_context()
(in
OrbitalsScore
)
MPI_POOL_MASTER_THINKS
(in
rosetta.basic._basic_
)
MAX
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
minimize_in_whole_structure_context()
(in
HolesEnergy
)
MPI_POOL_MASTER_THINKS
(in
ProfTag
)
MAX
(in
Operation
)
minimize_in_whole_structure_context()
(in
HolesEnergyRes
)
MPI_POOL_SLAVE_THINKS
(in
rosetta.basic
)
max()
(in
DOF_ID_Range
)
minimize_in_whole_structure_context()
(in
SurfEnergy
)
MPI_POOL_SLAVE_THINKS
(in
rosetta.basic._basic_
)
max()
(in
TorsionID_Range
)
minimize_in_whole_structure_context()
(in
SurfVolEnergy
)
MPI_POOL_SLAVE_THINKS
(in
ProfTag
)
max()
(in
rosetta.numeric._numeric_
)
minimize_in_whole_structure_context()
(in
RG_Energy_RNA
)
mpi_rank()
(in
rosetta.protocols.wum._protocols_wum_
)
max()
(in
xyzTriple_Real
)
minimize_in_whole_structure_context()
(in
RNA_BulgeEnergy
)
mpi_rank()
(in
SimulateMPI
)
max()
(in
xyzTriple_SSize
)
minimize_in_whole_structure_context()
(in
RNA_FullAtomStackingEnergy
)
mpi_rank()
(in
rosetta.utility._utility_
)
max()
(in
xyzTriple_Size
)
minimize_in_whole_structure_context()
(in
RNA_FullAtomVDW_BasePhosphate
)
MPI_Refine_Emperor
(in
rosetta.protocols.mpi_refinement._protocols_mpi_refinement_
)
max()
(in
xyzTriple_double
)
minimize_in_whole_structure_context()
(in
RNA_JR_SuiteEnergy
)
MPI_Refine_EmperorAP
(in
rosetta.protocols.mpi_refinement._protocols_mpi_refinement_
)
max()
(in
xyzTriple_float
)
minimize_in_whole_structure_context()
(in
RNA_LJ_BaseEnergy
)
MPI_Refine_EmperorCAP
(in
rosetta.protocols.mpi_refinement._protocols_mpi_refinement_
)
max()
(in
xyzVector_Real
)
minimize_in_whole_structure_context()
(in
RNA_Mg_Energy
)
MPI_Refine_Master
(in
rosetta.protocols.mpi_refinement._protocols_mpi_refinement_
)
max()
(in
xyzVector_SSize
)
minimize_in_whole_structure_context()
(in
RNA_PairwiseLowResolutionEnergy
)
MPI_Refine_MasterAP
(in
rosetta.protocols.mpi_refinement._protocols_mpi_refinement_
)
max()
(in
xyzVector_Size
)
minimize_in_whole_structure_context()
(in
RNA_SugarCloseEnergy
)
MPI_Refine_MasterCAP
(in
rosetta.protocols.mpi_refinement._protocols_mpi_refinement_
)
max()
(in
xyzVector_double
)
minimize_in_whole_structure_context()
(in
RNA_SuiteEnergy
)
mpi_refinement
(in
rosetta.protocols
)
max()
(in
xyzVector_float
)
minimize_in_whole_structure_context()
(in
RNA_TorsionEnergy
)
MPI_Refinement
(in
rosetta.protocols.mpi_refinement._protocols_mpi_refinement_
)
max()
(in
RandomGenerator
)
minimize_in_whole_structure_context()
(in
RNA_VDW_Energy
)
MPI_RefinementAP
(in
rosetta.protocols.mpi_refinement._protocols_mpi_refinement_
)
max()
(in
rosetta.utility._utility_
)
minimize_in_whole_structure_context()
(in
StackElecEnergy
)
MPI_RefinementCAP
(in
rosetta.protocols.mpi_refinement._protocols_mpi_refinement_
)
max_angle()
(in
AngleToVector
)
minimize_in_whole_structure_context()
(in
RNA_ChemicalShiftEnergy
)
MPI_SEND_ACCEPTED
(in
rosetta.basic
)
max_angle_disp()
(in
BackrubSegment
)
minimize_in_whole_structure_context()
(in
RNA_ChemicalMappingEnergy
)
MPI_SEND_ACCEPTED
(in
rosetta.basic._basic_
)
max_angle_disp_4()
(in
BackrubMover
)
minimize_in_whole_structure_context()
(in
RNA_DataBackboneEnergy
)
MPI_SEND_ACCEPTED
(in
ProfTag
)
max_angle_disp_7()
(in
BackrubMover
)
minimize_in_whole_structure_context()
(in
FastSAXSEnergy
)
MPI_SEND_UPDATE
(in
rosetta.basic
)
max_angle_disp_slope()
(in
BackrubMover
)
minimize_in_whole_structure_context()
(in
SAXSEnergy
)
MPI_SEND_UPDATE
(in
rosetta.basic._basic_
)
max_atom_radius()
(in
RotamerDots
)
minimize_in_whole_structure_context()
(in
symEnergy
)
MPI_SEND_UPDATE
(in
ProfTag
)
max_atom_types()
(in
HolesParams
)
minimize_in_whole_structure_context()
(in
AACompositionEnergy
)
MPI_SLAVE_REPORT_NEW_COORDS
(in
rosetta.basic
)
max_atomic_interaction_cutoff()
(in
ScoreFunction
)
minimize_in_whole_structure_context()
(in
NatbiasSecondaryStructureEnergy
)
MPI_SLAVE_REPORT_NEW_COORDS
(in
rosetta.basic._basic_
)
max_atomic_interaction_distance()
(in
ScoreFunctionInfo
)
minimize_in_whole_structure_context()
(in
EnsembleEnergy
)
MPI_SLAVE_REPORT_NEW_COORDS
(in
ProfTag
)
max_atoms()
(in
BackrubMover
)
minimize_in_whole_structure_context()
(in
InterchainEnvEnergy
)
MPI_SLAVE_REPORT_SIZES
(in
rosetta.basic
)
max_bbrms()
(in
LoopHashMoverWrapper
)
minimize_in_whole_structure_context()
(in
InterchainPairEnergy
)
MPI_SLAVE_REPORT_SIZES
(in
rosetta.basic._basic_
)
max_ca_dis2()
(in
ResPairMotifQuery
)
minimize_in_whole_structure_context()
(in
ResidualDipolarCouplingEnergyRigidSegments
)
MPI_SLAVE_REPORT_SIZES
(in
ProfTag
)
max_cache_size()
(in
HierarchicalLevel
)
minimize_in_whole_structure_context()
(in
SpecialRotamerEnergy
)
MPI_SYNC_POOL_DIFF
(in
rosetta.basic
)
max_cb_cb_dist()
(in
PlacementAuctionMover
)
minimize_in_whole_structure_context()
(in
PCS_Energy
)
MPI_SYNC_POOL_DIFF
(in
rosetta.basic._basic_
)
max_connpoints_for_residue()
(in
CPDataCorrespondence
)
minimize_in_whole_structure_context()
(in
PcsEnergy
)
MPI_SYNC_POOL_DIFF
(in
ProfTag
)
max_context_neighbor_cutoff()
(in
ScoreFunctionInfo
)
minimize_in_whole_structure_context()
(in
PCS_Energy_Ts1
)
mpi_tags
(in
rosetta.protocols.jd2._protocols_jd2_
)
max_cycles()
(in
CCDLoopClosureMover
)
minimize_in_whole_structure_context()
(in
PCS_Energy_Ts2
)
MPI_WorkUnitManager
(in
rosetta.protocols.wum._protocols_wum_
)
max_dis()
(in
CarbonHBondPotential
)
minimize_in_whole_structure_context()
(in
PCS_Energy_Ts3
)
MPI_WorkUnitManager_Slave
(in
rosetta.protocols.wum._protocols_wum_
)
max_dis()
(in
DistanceFunc
)
minimize_in_whole_structure_context()
(in
PCS_Energy_Ts4
)
MPI_WorkUnitManager_SlaveAP
(in
rosetta.protocols.wum._protocols_wum_
)
max_dis()
(in
Etable
)
minimize_in_whole_structure_context()
(in
PDDFEnergy
)
MPI_WorkUnitManager_SlaveCAP
(in
rosetta.protocols.wum._protocols_wum_
)
max_dis()
(in
Coulomb
)
minimize_interface()
(in
AntibodyDesignModeler
)
MPI_WorkUnitManagerAP
(in
rosetta.protocols.wum._protocols_wum_
)
max_dis()
(in
GoapEnergy
)
minimize_no_bb()
(in
PlaceSimultaneouslyMover
)
MPI_WorkUnitManagerCAP
(in
rosetta.protocols.wum._protocols_wum_
)
max_dis2()
(in
CarbonHBondEnergy
)
minimize_rotamer()
(in
MakeRotLibMover
)
MPIArchiveJobDistributor
(in
rosetta.protocols.jd2.archive._protocols_jd2_archive_
)
max_dis2()
(in
Coulomb
)
minimize_single_res()
(in
ResampleMover
)
MPIArchiveJobDistributorAP
(in
rosetta.protocols.jd2.archive._protocols_jd2_archive_
)
max_dist()
(in
ShortestPathInFoldTree
)
minimize_single_res_frequency()
(in
StepWiseMonteCarloOptions
)
MPIArchiveJobDistributorCAP
(in
rosetta.protocols.jd2.archive._protocols_jd2_archive_
)
max_dist()
(in
MMLJEnergyTable
)
minimize_tensors_fix_from_PCS_data()
(in
PcsEnergy
)
MPIBARRIER
(in
rosetta.basic
)
max_dist_squared()
(in
RNA_ChainClosableGeometryChecker
)
minimize_tensors_from_PCS_data()
(in
PCS_Energy
)
MPIBARRIER
(in
rosetta.basic._basic_
)
max_distance()
(in
AddConstraintsToCurrentConformationMover
)
minimize_tensors_from_PCS_data()
(in
PcsEnergy
)
MPIBARRIER
(in
ProfTag
)
max_distance()
(in
RigidBodyStepWiseSamplerValueRange
)
minimize_tensors_from_PCS_data()
(in
PCS_Energy_Ts1
)
MPIBARRIER_BEGIN
(in
rosetta.basic
)
max_frag_len()
(in
FragmentPicker
)
minimize_tensors_from_PCS_data()
(in
PCS_Energy_Ts2
)
MPIBARRIER_BEGIN
(in
rosetta.basic._basic_
)
max_frag_length()
(in
FragSet
)
minimize_tensors_from_PCS_data()
(in
PCS_Energy_Ts3
)
MPIBARRIER_BEGIN
(in
ProfTag
)
max_gap_percentage()
(in
SequenceAlignment
)
minimize_tensors_from_PCS_data()
(in
PCS_Energy_Ts4
)
MPIBARRIER_END
(in
rosetta.basic
)
max_generations()
(in
GeneticAlgorithmBase
)
minimize_tensors_from_PCS_data_with_svd()
(in
PcsEnergy
)
MPIBARRIER_END
(in
rosetta.basic._basic_
)
max_heavy_heavy_cutoff()
(in
Etable
)
minimize_tolerance()
(in
MinimizerOptions
)
MPIBARRIER_END
(in
ProfTag
)
max_heavy_hydrogen_cutoff()
(in
Etable
)
minimize_toward_stub()
(in
PlaceOnLoop
)
MPICANONICALSAMPLING
(in
rosetta.basic
)
max_hydrogen_hydrogen_cutoff()
(in
Etable
)
minimize_with_constraints()
(in
SymShakeStructureMover
)
MPICANONICALSAMPLING
(in
rosetta.basic._basic_
)
max_hydrogen_lj_radius()
(in
Etable
)
minimize_with_constraints()
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
MPICANONICALSAMPLING
(in
ProfTag
)
max_inner_cycles()
(in
LoopMover_Refine_CCD
)
MinimizeBackbone
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
MPICOMMCREATION
(in
rosetta.basic
)
max_inter_ss_bbrms()
(in
LoopHashDiversifier
)
MinimizeBackboneAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
MPICOMMCREATION
(in
rosetta.basic._basic_
)
max_intra_ss_bbrms()
(in
LoopHashDiversifier
)
MinimizeBackboneCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
MPICOMMCREATION
(in
ProfTag
)
max_iter()
(in
MinimizerOptions
)
MinimizeBackboneCreator
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
MpiFileBuffer
(in
rosetta.protocols.jd2._protocols_jd2_
)
max_iter()
(in
DnaInterfaceMinMover
)
MinimizeBackboneCreatorAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
MpiFileBufferAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
max_iter()
(in
RelaxProtocolBase
)
MinimizeBackboneCreatorCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
MpiFileBufferCAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
max_iter()
(in
MinMover
)
MinimizeHotspots()
(in
MapHotspot
)
MPIFileBufJobDistributor
(in
rosetta.protocols.jd2._protocols_jd2_
)
max_iter()
(in
SymMinMover
)
MinimizeLigand
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
MPIFileBufJobDistributorAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
max_length()
(in
EnzdesLoopInfo
)
MinimizeLigandAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
MPIFileBufJobDistributorCAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
max_linear_chainbreak()
(in
BluePrintBDR
)
MinimizeLigandCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
MPIH_ADD_FIRST_STRUCTURE
(in
rosetta.basic
)
max_linear_chainbreak()
(in
BDR
)
Minimizer
(in
rosetta.core.optimization._core_optimization_
)
MPIH_ADD_FIRST_STRUCTURE
(in
rosetta.basic._basic_
)
max_linear_chainbreak()
(in
VarLengthBuild
)
minimizer_options()
(in
SmallMinCCDTrial
)
MPIH_ADD_FIRST_STRUCTURE
(in
ProfTag
)
max_missing_weight()
(in
StepWiseMonteCarloOptions
)
minimizer_rename_tag()
(in
StepWiseRNA_ModelerOptions
)
MPIH_EVAL_AGAINST_NBR
(in
rosetta.basic
)
max_non_hydrogen_lj_radius()
(in
Etable
)
MinimizerAP
(in
rosetta.core.optimization._core_optimization_
)
MPIH_EVAL_AGAINST_NBR
(in
rosetta.basic._basic_
)
max_nstruct()
(in
LoopHashMoverWrapper
)
MinimizerCAP
(in
rosetta.core.optimization._core_optimization_
)
MPIH_EVAL_AGAINST_NBR
(in
ProfTag
)
max_ntries()
(in
StepWiseSampleAndScreen
)
MinimizerMap
(in
rosetta.core.optimization._core_optimization_
)
MPIH_EVAL_CHECK_PROGRESS
(in
rosetta.basic
)
max_path_length()
(in
AveragePathLengthFilter
)
MinimizerMapAP
(in
rosetta.core.optimization._core_optimization_
)
MPIH_EVAL_CHECK_PROGRESS
(in
rosetta.basic._basic_
)
max_per_move_torsion_delta_per_residue()
(in
CCDLoopClosureMover
)
MinimizerMapBase
(in
rosetta.core.kinematics._core_kinematics_
)
MPIH_EVAL_CHECK_PROGRESS
(in
ProfTag
)
max_pools()
(in
QuotaDebug
)
MinimizerMapBaseAP
(in
rosetta.core.kinematics._core_kinematics_
)
MPIH_EVAL_COMMUNICATE_NEW
(in
rosetta.basic
)
max_population_size()
(in
GeneticAlgorithmBase
)
MinimizerMapBaseCAP
(in
rosetta.core.kinematics._core_kinematics_
)
MPIH_EVAL_COMMUNICATE_NEW
(in
rosetta.basic._basic_
)
max_pos()
(in
FragSet
)
MinimizerMapCAP
(in
rosetta.core.optimization._core_optimization_
)
MPIH_EVAL_COMMUNICATE_NEW
(in
ProfTag
)
max_rad()
(in
rosetta.core.scoring.packstat._core_scoring_packstat_
)
MinimizerOptions
(in
rosetta.core.optimization._core_optimization_
)
MPIH_PREPARE_WRITE_STRUCTURES
(in
rosetta.basic
)
max_rama_score_increase()
(in
RamaCheckBase
)
MinimizerOptionsAP
(in
rosetta.core.optimization._core_optimization_
)
MPIH_PREPARE_WRITE_STRUCTURES
(in
rosetta.basic._basic_
)
max_residue_count()
(in
ResidueCountFilter
)
MinimizerOptionsCAP
(in
rosetta.core.optimization._core_optimization_
)
MPIH_PREPARE_WRITE_STRUCTURES
(in
ProfTag
)
max_rms()
(in
FastGapMover
)
minimum_sampling_probability()
(in
Ramachandran
)
MPIH_UPDATE_EVAL
(in
rosetta.basic
)
max_rms()
(in
LoopHashDiversifier
)
minimum_sampling_probability()
(in
Ramachandran2B
)
MPIH_UPDATE_EVAL
(in
rosetta.basic._basic_
)
max_rms()
(in
LoopHashMoverWrapper
)
MiniPose
(in
rosetta.core.pose._core_pose_
)
MPIH_UPDATE_EVAL
(in
ProfTag
)
max_rotbump_energy()
(in
PackerTask
)
MiniPoseAP
(in
rosetta.core.pose._core_pose_
)
MPIH_WRITE_STRUCT
(in
rosetta.basic
)
max_rotbump_energy()
(in
PackerTask_
)
MiniPoseCAP
(in
rosetta.core.pose._core_pose_
)
MPIH_WRITE_STRUCT
(in
rosetta.basic._basic_
)
max_sample_iterations()
(in
KinematicPerturber
)
MiniRelax
(in
rosetta.protocols.relax._protocols_relax_
)
MPIH_WRITE_STRUCT
(in
ProfTag
)
max_samples()
(in
BackboneGridSampler
)
MiniRelaxAP
(in
rosetta.protocols.relax._protocols_relax_
)
MPIJobDistributor()
(in
rosetta
)
max_samples()
(in
BundleGridSampler
)
MiniRelaxCAP
(in
rosetta.protocols.relax._protocols_relax_
)
MPIMultiCommJobDistributor
(in
rosetta.protocols.jd2._protocols_jd2_
)
max_score()
(in
XformScore
)
minirosetta_svn_url()
(in
rosetta.core._core_
)
MPIMultiCommJobDistributorAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
max_separation_dist_to_target_atom()
(in
AtomAngleSecMatchRPE
)
minirosetta_svn_version()
(in
rosetta.core._core_
)
MPIMultiCommJobDistributorCAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
max_separation_dist_to_target_atom()
(in
AtomDihedralSecMatchRPE
)
MinMover
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MPIMultistateFitnessFunction
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
max_separation_dist_to_target_atom()
(in
AtomDistanceSecMatchRPE
)
MINMOVER_APPLY
(in
rosetta.basic
)
MPIMultistateFitnessFunctionAP
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
max_separation_dist_to_target_atom()
(in
AtomGeometrySecMatchRPE
)
MINMOVER_APPLY
(in
rosetta.basic._basic_
)
MPIMultistateFitnessFunctionCAP
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
max_separation_dist_to_target_atom()
(in
GeometrySecMatchRPE
)
MINMOVER_APPLY
(in
ProfTag
)
MPIPOOLCOMMUNICATION
(in
rosetta.basic
)
max_separation_dist_to_target_atom()
(in
ScoringSecMatchRPE
)
MinMoverAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MPIPOOLCOMMUNICATION
(in
rosetta.basic._basic_
)
max_separation_dist_to_target_atom()
(in
SecMatchResiduePairEvaluator
)
MinMoverCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MPIPOOLCOMMUNICATION
(in
ProfTag
)
max_seq_sep()
(in
MaxSeqSepConstraintSet
)
MinMoverCreator
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MPIWorkPartitionJobDistributor
(in
rosetta.protocols.jd2._protocols_jd2_
)
max_struct()
(in
CombinePoseMover
)
MinMoverCreatorAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MPIWorkPartitionJobDistributorAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
max_struct_try()
(in
CombinePoseMover
)
MinMoverCreatorCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MPIWorkPartitionJobDistributorCAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
max_total_torsion_delta_per_residue()
(in
CCDLoopClosureMover
)
MinMultiHarmonicFunc
(in
rosetta.core.scoring.func._core_scoring_func_
)
MPIWorkPoolJobDistributor
(in
rosetta.protocols.jd2._protocols_jd2_
)
max_tries()
(in
FilterMover
)
MinMultiHarmonicFuncAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
MPIWorkPoolJobDistributorAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
max_tries_multiplier_for_ccd()
(in
StepWiseBasicOptions
)
MinMultiHarmonicFuncCAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
MPIWorkPoolJobDistributorCAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
max_val()
(in
Polynomial_1d
)
MinPackMover
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MPLipo
(in
rosetta
)
max_valence_electrons_sp()
(in
ElectronConfiguration
)
MinPackMoverAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MPLipo
(in
rosetta.core.scoring
)
max_value()
(in
PSSM2BfactorMover
)
MinPackMoverCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MPLipo
(in
rosetta.core.scoring._core_scoring_
)
max_values()
(in
KDPointList
)
MinPackMoverCreator
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MPLipo
(in
ScoreType
)
MaxAngularMomentumQuantumNumber
(in
AngularMomentumQuantumNumber
)
MinPackMoverCreatorAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MPLipoEnergy
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MaxAngularMomentumQuantumNumber
(in
ElectronConfiguration
)
MinPackMoverCreatorCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MPLipoEnergyAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
maxcycles()
(in
IteratedConvergenceMover
)
MinScoreScoreFunction
(in
rosetta.core.scoring._core_scoring_
)
MPLipoEnergyCAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MaxExpression
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
MinScoreScoreFunctionAP
(in
rosetta.core.scoring._core_scoring_
)
MPLipoEnergyCreator
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MaxExpressionAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
MinScoreScoreFunctionCAP
(in
rosetta.core.scoring._core_scoring_
)
MPLipoEnergyCreatorAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MaxExpressionCAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
mintype()
(in
CDRGraftDesignOptions
)
MPLipoEnergyCreatorCAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
maxNominalRes()
(in
ElectronDensity
)
MinTypeEnum
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
MPNonHelix
(in
rosetta
)
MaxPrincipleQuantumNumber
(in
ElectronConfiguration
)
MinTypeEnum_total
(in
rosetta.protocols.antibody.design
)
MPNonHelix
(in
rosetta.core.scoring
)
MaxPrincipleQuantumNumber
(in
PrincipalQuantumNumber
)
MinTypeEnum_total
(in
MinTypeEnum
)
MPNonHelix
(in
rosetta.core.scoring._core_scoring_
)
maxrad()
(in
QuaternionGrid
)
MinTypeEnum_total
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
MPNonHelix
(in
ScoreType
)
MaxSeqSepConstraintSet
(in
rosetta.protocols.constraints_additional._protocols_constraints_additional_
)
mismatch_score()
(in
SimpleScoringScheme
)
MPNonHelixPenalty
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MaxSeqSepConstraintSetAP
(in
rosetta.protocols.constraints_additional._protocols_constraints_additional_
)
missing_dens_as_jump()
(in
FileDataOptions
)
MPNonHelixPenaltyAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MaxSeqSepConstraintSetCAP
(in
rosetta.protocols.constraints_additional._protocols_constraints_additional_
)
missing_in_pose()
(in
EnzConstraintParameters
)
MPNonHelixPenaltyCAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
maxsub()
(in
rosetta.numeric.model_quality._numeric_model_quality_
)
missing_in_pose()
(in
EnzdesCstParamCache
)
MPNonHelixPenaltyCreator
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
maxtrials()
(in
GenericMonteCarloMover
)
missing_O2prime()
(in
rosetta.core.io.pdb._core_io_pdb_
)
MPNonHelixPenaltyCreatorAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
Mbhbond()
(in
HBondOptions
)
missing_res
(in
ScoreType
)
MPNonHelixPenaltyCreatorCAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
mc()
(in
ClassicAbinitio
)
missing_res
(in
rosetta.core.scoring._core_scoring_
)
mpose()
(in
MotifHit
)
mc()
(in
MembraneAbinitio
)
missing_res
(in
rosetta.core.scoring
)
mposeptr()
(in
MotifHit
)
mc()
(in
LoopClosure
)
missing_res
(in
rosetta
)
MPPair
(in
rosetta
)
mc()
(in
LoopRefineInnerCycle
)
missing_residues()
(in
LoopGraph
)
MPPair
(in
rosetta.core.scoring
)
MC()
(in
DualMonteCarlo
)
MissingDensityToJumpMover
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MPPair
(in
rosetta.core.scoring._core_scoring_
)
mc()
(in
TrialMover
)
MissingDensityToJumpMoverAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MPPair
(in
ScoreType
)
MC_ACCEPT
(in
rosetta.basic
)
MissingDensityToJumpMoverCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MPPairEnergy
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MC_ACCEPT
(in
rosetta.basic._basic_
)
MissingEnergy
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MPPairEnergyAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MC_ACCEPT
(in
ProfTag
)
MissingEnergyAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MPPairEnergyCAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
mc_accepted()
(in
MonteCarlo
)
MissingEnergyCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MPPairEnergyCreator
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
mc_accepted_string()
(in
MonteCarlo
)
MissingEnergyCreator
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MPPairEnergyCreatorAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
mc_accpeted()
(in
GenericMonteCarloMover
)
MissingEnergyCreatorAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MPPairEnergyCreatorCAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MC_Comb
(in
rosetta.protocols.stepwise.sampler._protocols_stepwise_sampler_
)
MissingEnergyCreatorCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MPSymDockMover
(in
rosetta.protocols.symmetric_docking.membrane._protocols_symmetric_docking_membrane_
)
MC_CombAP
(in
rosetta.protocols.stepwise.sampler._protocols_stepwise_sampler_
)
MixtureFunc
(in
rosetta.core.scoring.func._core_scoring_func_
)
MPSymDockMoverAP
(in
rosetta.protocols.symmetric_docking.membrane._protocols_symmetric_docking_membrane_
)
MC_CombCAP
(in
rosetta.protocols.stepwise.sampler._protocols_stepwise_sampler_
)
MixtureFuncAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
MPSymDockMoverCAP
(in
rosetta.protocols.symmetric_docking.membrane._protocols_symmetric_docking_membrane_
)
mc_convergence_checks
(in
rosetta.protocols.canonical_sampling
)
MixtureFuncCAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
MPSymDockMoverCreator
(in
rosetta.protocols.symmetric_docking.membrane._protocols_symmetric_docking_membrane_
)
mc_convergence_checks
(in
rosetta.protocols.moves
)
MKDIR()
(in
rosetta.protocols.sparta._protocols_sparta_
)
MPSymDockMoverCreatorAP
(in
rosetta.protocols.symmetric_docking.membrane._protocols_symmetric_docking_membrane_
)
MC_ONE_TORSION
(in
rosetta.protocols.stepwise.sampler
)
Mlipo
(in
rosetta
)
MPSymDockMoverCreatorCAP
(in
rosetta.protocols.symmetric_docking.membrane._protocols_symmetric_docking_membrane_
)
MC_ONE_TORSION
(in
rosetta.protocols.stepwise.sampler._protocols_stepwise_sampler_
)
Mlipo
(in
rosetta.core.scoring
)
MPTermini
(in
rosetta
)
MC_ONE_TORSION
(in
StepWiseSamplerType
)
Mlipo
(in
rosetta.core.scoring._core_scoring_
)
MPTermini
(in
rosetta.core.scoring
)
MC_OneTorsion
(in
rosetta.protocols.stepwise.sampler._protocols_stepwise_sampler_
)
Mlipo
(in
ScoreType
)
MPTermini
(in
rosetta.core.scoring._core_scoring_
)
MC_OneTorsionAP
(in
rosetta.protocols.stepwise.sampler._protocols_stepwise_sampler_
)
mm
(in
rosetta.core.scoring
)
MPTermini
(in
ScoreType
)
MC_OneTorsionCAP
(in
rosetta.protocols.stepwise.sampler._protocols_stepwise_sampler_
)
mm()
(in
PrepackMover
)
MPTerminiPenalty
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MC_StepWiseSampler
(in
rosetta.protocols.stepwise.sampler._protocols_stepwise_sampler_
)
mm_atom_name()
(in
Residue
)
MPTerminiPenaltyAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MC_StepWiseSamplerAP
(in
rosetta.protocols.stepwise.sampler._protocols_stepwise_sampler_
)
mm_atom_set()
(in
MMLJLibrary
)
MPTerminiPenaltyCAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MC_StepWiseSamplerCAP
(in
rosetta.protocols.stepwise.sampler._protocols_stepwise_sampler_
)
mm_atom_type()
(in
ResidueType
)
MPTerminiPenaltyCreator
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MCA
(in
rosetta.protocols.moves._protocols_moves_
)
mm_atom_type()
(in
MMEnergyTableAtom
)
MPTerminiPenaltyCreatorAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MCA_accepted_score_beat_last
(in
rosetta
)
mm_atom_type_index()
(in
Atom
)
MPTerminiPenaltyCreatorCAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MCA_accepted_score_beat_last
(in
rosetta.protocols.moves
)
mm_atom_type_name()
(in
Adduct
)
MPTMProj
(in
rosetta
)
MCA_accepted_score_beat_last
(in
MCA
)
mm_atom_type_set()
(in
ChemicalManager
)
MPTMProj
(in
rosetta.core.scoring
)
MCA_accepted_score_beat_last
(in
rosetta.protocols.moves._protocols_moves_
)
mm_atom_type_set()
(in
ResidueTypeSet
)
MPTMProj
(in
rosetta.core.scoring._core_scoring_
)
MCA_accepted_score_beat_low
(in
rosetta
)
mm_atom_type_set_tag()
(in
ResidueLoaderOptions
)
MPTMProj
(in
ScoreType
)
MCA_accepted_score_beat_low
(in
rosetta.protocols.moves
)
mm_bend
(in
ScoreType
)
MPTMProjPenalty
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MCA_accepted_score_beat_low
(in
MCA
)
mm_bend
(in
rosetta.core.scoring._core_scoring_
)
MPTMProjPenaltyAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MCA_accepted_score_beat_low
(in
rosetta.protocols.moves._protocols_moves_
)
mm_bend
(in
rosetta.core.scoring
)
MPTMProjPenaltyCAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MCA_accepted_thermally
(in
rosetta
)
mm_bend
(in
rosetta
)
MPTMProjPenaltyCreator
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MCA_accepted_thermally
(in
rosetta.protocols.moves
)
mm_bond_angle_residue_type_param_set()
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MPTMProjPenaltyCreatorAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MCA_accepted_thermally
(in
MCA
)
mm_bondangle_library()
(in
MMBondAngleResidueTypeParamSet
)
MPTMProjPenaltyCreatorCAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
MCA_accepted_thermally
(in
rosetta.protocols.moves._protocols_moves_
)
mm_lj_energy_inter_method
(in
EnergyMethods
)
MRMover
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
MCA_rejected
(in
rosetta
)
mm_lj_energy_inter_method
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MRMoverAP
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
MCA_rejected
(in
rosetta.protocols.moves
)
mm_lj_energy_inter_method
(in
rosetta.core.scoring.methods
)
MRMoverCAP
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
MCA_rejected
(in
MCA
)
mm_lj_inter_atr
(in
ScoreType
)
MS_SUCCESS
(in
rosetta
)
MCA_rejected
(in
rosetta.protocols.moves._protocols_moves_
)
mm_lj_inter_atr
(in
rosetta.core.scoring._core_scoring_
)
MS_SUCCESS
(in
rosetta.protocols.moves
)
MCAligner
(in
rosetta.core.sequence._core_sequence_
)
mm_lj_inter_atr
(in
rosetta.core.scoring
)
MS_SUCCESS
(in
rosetta.protocols.moves._protocols_moves_
)
MCAlignerAP
(in
rosetta.core.sequence._core_sequence_
)
mm_lj_inter_atr
(in
rosetta
)
MS_SUCCESS
(in
MoverStatus
)
MCAlignerCAP
(in
rosetta.core.sequence._core_sequence_
)
mm_lj_inter_rep
(in
ScoreType
)
msa()
(in
PackingScoreResData
)
Mcbeta
(in
rosetta
)
mm_lj_inter_rep
(in
rosetta.core.scoring._core_scoring_
)
MSDJobDistributor
(in
rosetta.protocols.jd2._protocols_jd2_
)
Mcbeta
(in
rosetta.core.scoring
)
mm_lj_inter_rep
(in
rosetta.core.scoring
)
MSDJobDistributorAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
Mcbeta
(in
rosetta.core.scoring._core_scoring_
)
mm_lj_inter_rep
(in
rosetta
)
MSDJobDistributorCAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
Mcbeta
(in
ScoreType
)
mm_lj_intra_atr
(in
ScoreType
)
MSDMover
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
mcfi()
(in
MatchConstraintFileInfoList
)
mm_lj_intra_atr
(in
rosetta.core.scoring._core_scoring_
)
MSDMoverAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
mcfi_list()
(in
EnzConstraintIO
)
mm_lj_intra_atr
(in
rosetta.core.scoring
)
MSDMoverCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
mcfi_lists_size()
(in
EnzConstraintIO
)
mm_lj_intra_atr
(in
rosetta
)
MSDMoverCreator
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
mcfis_for_upstream_restype()
(in
MatchConstraintFileInfoList
)
mm_lj_intra_rep
(in
ScoreType
)
MSDMoverCreatorAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MCShowMover
(in
rosetta.protocols.moves._protocols_moves_
)
mm_lj_intra_rep
(in
rosetta.core.scoring._core_scoring_
)
MSDMoverCreatorCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MCShowMoverAP
(in
rosetta.protocols.moves._protocols_moves_
)
mm_lj_intra_rep
(in
rosetta.core.scoring
)
msg()
(in
EXCN_InvalidFoldTree
)
MCShowMoverCAP
(in
rosetta.protocols.moves._protocols_moves_
)
mm_lj_intra_rep
(in
rosetta
)
msg()
(in
EXCN_Base
)
md
(in
rosetta.protocols
)
mm_lj_library()
(in
MMLJScore
)
msg()
(in
EXCN_Msg_Exception
)
MD_Angle
(in
rosetta.protocols.cartesian._protocols_cartesian_
)
mm_lj_score()
(in
MMLJEnergyTable
)
msg_type()
(in
SimulateMPIMessage
)
MD_AngleAP
(in
rosetta.protocols.cartesian._protocols_cartesian_
)
mm_name()
(in
Atom
)
mstype_from_name()
(in
rosetta.protocols.moves._protocols_moves_
)
MD_AngleCAP
(in
rosetta.protocols.cartesian._protocols_cartesian_
)
mm_stretch
(in
ScoreType
)
mt19937_RG
(in
rosetta.numeric.random._numeric_random_
)
MD_Bond
(in
rosetta.protocols.cartesian._protocols_cartesian_
)
mm_stretch
(in
rosetta.core.scoring._core_scoring_
)
mt19937_RGAP
(in
rosetta.numeric.random._numeric_random_
)
MD_BondAP
(in
rosetta.protocols.cartesian._protocols_cartesian_
)
mm_stretch
(in
rosetta.core.scoring
)
mt19937_RGCAP
(in
rosetta.numeric.random._numeric_random_
)
MD_BondCAP
(in
rosetta.protocols.cartesian._protocols_cartesian_
)
mm_stretch
(in
rosetta
)
mu()
(in
BBDepCartBondedParameters
)
MD_HarmonicDihedral
(in
rosetta.protocols.cartesian._protocols_cartesian_
)
mm_twist
(in
ScoreType
)
mu()
(in
BBIndepCartBondedParameters
)
MD_HarmonicDihedralAP
(in
rosetta.protocols.cartesian._protocols_cartesian_
)
mm_twist
(in
rosetta.core.scoring._core_scoring_
)
mu()
(in
CartBondedParameters
)
MD_HarmonicDihedralCAP
(in
rosetta.protocols.cartesian._protocols_cartesian_
)
mm_twist
(in
rosetta.core.scoring
)
multi_cool_annealer()
(in
PackerTask
)
MDBase
(in
rosetta.protocols.md._protocols_md_
)
mm_twist
(in
rosetta
)
multi_cool_annealer()
(in
PackerTask_
)
MDBaseAP
(in
rosetta.protocols.md._protocols_md_
)
mm_type()
(in
Atom
)
multi_cool_annealer_history_size()
(in
PackerTask
)
MDBaseCAP
(in
rosetta.protocols.md._protocols_md_
)
MMAtomType
(in
rosetta.core.chemical._core_chemical_
)
multi_cool_annealer_history_size()
(in
PackerTask_
)
MDscheduleData
(in
rosetta.protocols.md._protocols_md_
)
MMAtomTypeAP
(in
rosetta.core.chemical._core_chemical_
)
multi_fast_relax()
(in
AbrelaxApplication
)
MDscheduleDataAP
(in
rosetta.protocols.md._protocols_md_
)
MMAtomTypeCAP
(in
rosetta.core.chemical._core_chemical_
)
multi_origin_list()
(in
FingerprintBase
)
MDscheduleDataCAP
(in
rosetta.protocols.md._protocols_md_
)
MMAtomTypeSet
(in
rosetta.core.chemical._core_chemical_
)
multi_relative()
(in
Operator
)
mean()
(in
rosetta.numeric._numeric_
)
MMAtomTypeSetAP
(in
rosetta.core.chemical._core_chemical_
)
multi_use()
(in
SaveAndRetrieveSidechains
)
mean_and_stdev()
(in
rosetta.protocols.mpi_refinement._protocols_mpi_refinement_
)
MMAtomTypeSetCAP
(in
rosetta.core.chemical._core_chemical_
)
multicomp()
(in
InterfacePackingFilter
)
mean_squared_error()
(in
MultiDimensionalHistogram
)
MMBondAngleEnergy
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
multicomp()
(in
OligomericAverageDegreeFilter
)
measure_bp_specificities()
(in
DnaInterfacePacker
)
MMBondAngleEnergyAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
multicomp()
(in
ShapeComplementarityFilter
)
measure_rotamer_recovery()
(in
RRComparer
)
MMBondAngleEnergyCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MultiConstraint
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
measure_rotamer_recovery()
(in
RRComparerAutomorphicRMSD
)
MMBondAngleEnergyCreator
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MultiConstraintAP
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
measure_rotamer_recovery()
(in
RRComparerChiDiff
)
MMBondAngleEnergyCreatorAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MultiConstraintCAP
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
measure_rotamer_recovery()
(in
RRComparerElecDensDiff
)
MMBondAngleEnergyCreatorCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MultiConstraintCreator
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
measure_rotamer_recovery()
(in
RRComparerRotBins
)
MMBondAngleLibrary
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MultiConstraintCreatorAP
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
measure_sequence_recovery()
(in
SequenceComparison
)
MMBondAngleLibraryAP
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MultiConstraintCreatorCAP
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
measure_sp3acc_BAH_from_hvy()
(in
HBondOptions
)
MMBondAngleLibraryCAP
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MultiCoolAnnealer
(in
rosetta.core.pack.annealer._core_pack_annealer_
)
measure_specificities()
(in
DnaInterfacePacker
)
MMBondAngleResidueTypeParam
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MultiCoolAnnealerAP
(in
rosetta.core.pack.annealer._core_pack_annealer_
)
measure_specificity()
(in
DnaInterfacePacker
)
MMBondAngleResidueTypeParamAP
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MultiCoolAnnealerCAP
(in
rosetta.core.pack.annealer._core_pack_annealer_
)
medal
(in
rosetta.protocols
)
MMBondAngleResidueTypeParamCAP
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MultiDimensionalHistogram
(in
rosetta.numeric._numeric_
)
MedalExchangeMover
(in
rosetta.protocols.medal._protocols_medal_
)
MMBondAngleResidueTypeParamSet
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MultiDimensionalHistogramAP
(in
rosetta.numeric._numeric_
)
MedalExchangeMoverAP
(in
rosetta.protocols.medal._protocols_medal_
)
MMBondAngleResidueTypeParamSetAP
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MultiDimensionalHistogramCAP
(in
rosetta.numeric._numeric_
)
MedalExchangeMoverCAP
(in
rosetta.protocols.medal._protocols_medal_
)
MMBondAngleResidueTypeParamSetCAP
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
Multifunc
(in
rosetta.core.optimization._core_optimization_
)
MedalMover
(in
rosetta.protocols.medal._protocols_medal_
)
MMBondAngleScore
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MultifuncAP
(in
rosetta.core.optimization._core_optimization_
)
MedalMoverAP
(in
rosetta.protocols.medal._protocols_medal_
)
MMBondAngleScoreAP
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MultifuncCAP
(in
rosetta.core.optimization._core_optimization_
)
MedalMoverCAP
(in
rosetta.protocols.medal._protocols_medal_
)
MMBondAngleScoreCAP
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MultiObjective
(in
rosetta.protocols.mpi_refinement._protocols_mpi_refinement_
)
median()
(in
rosetta.numeric._numeric_
)
MMBondLengthEnergy
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MultiObjectiveAP
(in
rosetta.protocols.mpi_refinement._protocols_mpi_refinement_
)
median()
(in
ReplicateFilter
)
MMBondLengthEnergyAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MultiObjectiveCAP
(in
rosetta.protocols.mpi_refinement._protocols_mpi_refinement_
)
MEM
(in
rosetta.core.conformation.membrane._core_conformation_membrane_
)
MMBondLengthEnergyCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MultiPhosphateSampler
(in
rosetta.protocols.stepwise.modeler.rna.phosphate._protocols_stepwise_modeler_rna_phosphate_
)
mem_all_atom_rmsd_no_super()
(in
rosetta.protocols.membrane._protocols_membrane_
)
MMBondLengthEnergyCreator
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MultiPhosphateSamplerAP
(in
rosetta.protocols.stepwise.modeler.rna.phosphate._protocols_stepwise_modeler_rna_phosphate_
)
mem_all_atom_rmsd_with_super()
(in
rosetta.protocols.membrane._protocols_membrane_
)
MMBondLengthEnergyCreatorAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MultiPhosphateSamplerCAP
(in
rosetta.protocols.stepwise.modeler.rna.phosphate._protocols_stepwise_modeler_rna_phosphate_
)
mem_bb_rmsd_no_super()
(in
rosetta.protocols.membrane._protocols_membrane_
)
MMBondLengthEnergyCreatorCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MULTIPLE_POSE_INFO
(in
Enum
)
mem_bb_rmsd_with_super()
(in
rosetta.protocols.membrane._protocols_membrane_
)
MMBondLengthLibrary
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MULTIPLE_POSE_INFO
(in
CacheableDataType
)
mem_cbeta_2TM_den12()
(in
MembraneData
)
MMBondLengthLibraryAP
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MultipleDomainMover
(in
rosetta.protocols.farna._protocols_farna_
)
mem_cbeta_2TM_den6()
(in
MembraneData
)
MMBondLengthLibraryCAP
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MultipleDomainMoverAP
(in
rosetta.protocols.farna._protocols_farna_
)
mem_cbeta_4TM_den12()
(in
MembraneData
)
MMBondLengthScore
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MultipleDomainMoverCAP
(in
rosetta.protocols.farna._protocols_farna_
)
mem_cbeta_4TM_den6()
(in
MembraneData
)
MMBondLengthScoreAP
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MultipleOutputWrapper
(in
rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
)
mem_cbeta_den12()
(in
MembraneData
)
MMBondLengthScoreCAP
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MultipleOutputWrapperAP
(in
rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
)
mem_cbeta_den6()
(in
MembraneData
)
MMEnergyTableAtom
(in
rosetta.core.scoring.mm.mmtrie._core_scoring_mm_mmtrie_
)
MultipleOutputWrapperCAP
(in
rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
)
mem_env_log10()
(in
MembraneData
)
MMEnergyTableAtomAP
(in
rosetta.core.scoring.mm.mmtrie._core_scoring_mm_mmtrie_
)
MultipleOutputWrapperCreator
(in
rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
)
mem_env_log6()
(in
MembraneData
)
MMEnergyTableAtomCAP
(in
rosetta.core.scoring.mm.mmtrie._core_scoring_mm_mmtrie_
)
MultipleOutputWrapperCreatorAP
(in
rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
)
mem_foot_print()
(in
LoopHashLibrary
)
MMLJEnergyInter
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MultipleOutputWrapperCreatorCAP
(in
rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
)
mem_foot_print()
(in
LoopHashMap
)
MMLJEnergyInterAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MultiplePoseMover
(in
rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
)
mem_foot_print()
(in
WorkUnitQueue
)
MMLJEnergyInterCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MultiplePoseMoverAP
(in
rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
)
mem_footprint()
(in
PDBSilentStruct
)
MMLJEnergyInterCreator
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MultiplePoseMoverCAP
(in
rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
)
mem_footprint()
(in
BinarySilentStruct
)
MMLJEnergyInterCreatorAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MultiplePoseMoverCreator
(in
rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
)
mem_footprint()
(in
RNA_SilentStruct
)
MMLJEnergyInterCreatorCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MultiplePoseMoverCreatorAP
(in
rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
)
mem_footprint()
(in
RigidBodySilentStruct
)
MMLJEnergyIntra
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MultiplePoseMoverCreatorCAP
(in
rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
)
mem_footprint()
(in
ScoreFileSilentStruct
)
MMLJEnergyIntraAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MultipleSigmoids
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
mem_footprint()
(in
ScoreJumpFileSilentStruct
)
MMLJEnergyIntraCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MultipleSigmoidsAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
mem_footprint()
(in
SilentStruct
)
MMLJEnergyIntraCreator
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MultipleSigmoidsCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
mem_footprint()
(in
WorkUnit_LoopHash
)
MMLJEnergyIntraCreatorAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MultipleSigmoidsFilterCreator
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
mem_footprint()
(in
WorkUnit_CombinePose
)
MMLJEnergyIntraCreatorCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MultipleSigmoidsFilterCreatorAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
mem_footprint()
(in
WorkUnit_FragInsert
)
MMLJEnergyTable
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MultipleSigmoidsFilterCreatorCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
mem_footprint()
(in
WorkUnit_KicCloser
)
MMLJEnergyTableAP
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
multiplicity()
(in
AmbiguousNMRDistanceConstraint
)
mem_footprint()
(in
WorkUnit_LoopHash
)
MMLJEnergyTableCAP
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MULTIPLY_SYMBOL
(in
rosetta.numeric.expression_parser
)
mem_footprint()
(in
WorkUnit_MD
)
MMLJLibrary
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MULTIPLY_SYMBOL
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
mem_footprint()
(in
WorkUnit_NormalMode
)
MMLJLibraryAP
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MULTIPLY_SYMBOL
(in
TokenType
)
mem_footprint()
(in
WorkUnit_PartialAbinitio
)
MMLJLibraryCAP
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MultiplyExpression
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
mem_footprint()
(in
WorkUnit_RamaPerturber
)
MMLJScore
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MultiplyExpressionAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
mem_footprint()
(in
WorkUnit_Relax
)
MMLJScoreAP
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MultiplyExpressionCAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
mem_footprint()
(in
WorkUnit_Sampler
)
MMLJScoreCAP
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MultiProbePerSphereAccumulator
(in
rosetta.core.scoring.packstat._core_scoring_packstat_
)
mem_footprint()
(in
WorkUnit_bbGauss
)
MMTorsionEnergy
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MultiProbePerSphereAccumulatorAP
(in
rosetta.core.scoring.packstat._core_scoring_packstat_
)
mem_footprint()
(in
WorkUnit_BatchRelax
)
MMTorsionEnergyAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MultiProbePerSphereAccumulatorCAP
(in
rosetta.core.scoring.packstat._core_scoring_packstat_
)
mem_footprint()
(in
WorkUnit_BatchRelax_and_PostRescore
)
MMTorsionEnergyCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MultiProbePoseAccumulator
(in
rosetta.core.scoring.packstat._core_scoring_packstat_
)
mem_footprint()
(in
DatabaseEntryWorkUnit
)
MMTorsionEnergyCreator
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MultiProbePoseAccumulatorAP
(in
rosetta.core.scoring.packstat._core_scoring_packstat_
)
mem_footprint()
(in
SilentStructStore
)
MMTorsionEnergyCreatorAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MultiProbePoseAccumulatorCAP
(in
rosetta.core.scoring.packstat._core_scoring_packstat_
)
mem_footprint()
(in
WorkUnitBase
)
MMTorsionEnergyCreatorCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
multistate_design
(in
rosetta.protocols
)
mem_footprint()
(in
WorkUnit_MoverWrapper
)
MMTorsionLibrary
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MultistateAggregateFunction
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
mem_footprint()
(in
WorkUnit_SilentStructStore
)
MMTorsionLibraryAP
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MultistateAggregateFunctionAP
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
mem_footprint()
(in
WorkUnit_Wait
)
MMTorsionLibraryCAP
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MultistateAggregateFunctionCAP
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
mem_pair_log()
(in
MembraneData
)
MMTorsionScore
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MultistateFitnessFunction
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
mem_stats()
(in
WorkUnitQueue
)
MMTorsionScoreAP
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MultiStateFitnessFunctionAP
(in
rosetta.protocols.multistate_design._protocols_multistate_design_'
)
memb_etable
(in
rosetta.core.scoring
)
MMTorsionScoreCAP
(in
rosetta.core.scoring.mm._core_scoring_mm_
)
MultistateFitnessFunctionAP
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
memb_etable()
(in
ScoringManager
)
mmtrie
(in
rosetta.core.scoring.mm
)
MultiStateFitnessFunctionCAP
(in
rosetta.protocols.multistate_design._protocols_multistate_design_'
)
Membed_init()
(in
MembranePotential
)
MNBRAK()
(in
BrentLineMinimization
)
MultistateFitnessFunctionCAP
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
Member()
(in
Permute
)
mod()
(in
rosetta.numeric._numeric_
)
MultiTemperatureTrialCounter
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
member_constraints()
(in
MultiConstraint
)
mode()
(in
SymUnsatHbondFilter
)
MultiTemperatureTrialCounterAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
MEMBRANE
(in
rosetta
)
mode()
(in
NormalMode
)
MultiTemperatureTrialCounterCAP
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
MEMBRANE
(in
rosetta.core.chemical
)
mode()
(in
ParsedProtocol
)
MultiThreadingMover
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
MEMBRANE
(in
rosetta.core.chemical._core_chemical_
)
mode()
(in
TaskAwareScoreTypeFilter
)
MultiThreadingMoverAP
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
MEMBRANE
(in
ResidueProperty
)
mode()
(in
StoreCompoundTaskMover
)
MultiThreadingMoverCAP
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
membrane
(in
rosetta.core.conformation
)
model_count()
(in
TrajectoryRecorder
)
multivec2poseBfacts()
(in
BfactorMultifunc
)
membrane
(in
rosetta.core.scoring
)
model_h3()
(in
CDRH3Modeler
)
multMatrix()
(in
rosetta.numeric.kinematic_closure._numeric_kinematic_closure_
)
membrane
(in
rosetta.protocols.docking
)
model_quality
(in
rosetta.numeric
)
multstubs()
(in
rosetta.protocols.sic_dock._protocols_sic_dock_
)
membrane
(in
rosetta.protocols
)
model_tag()
(in
StepWiseMonteCarlo
)
multTransMatrix()
(in
rosetta.numeric.kinematic_closure._numeric_kinematic_closure_
)
membrane
(in
rosetta.protocols.relax
)
ModelCDRH3
(in
rosetta.protocols.antibody._protocols_antibody_
)
MUST_CONTROL
(in
rosetta.protocols.environment.claims
)
membrane
(in
rosetta.protocols.symmetric_docking
)
ModelCDRH3AP
(in
rosetta.protocols.antibody._protocols_antibody_
)
MUST_CONTROL
(in
ClaimStrength
)
membrane()
(in
ImportPoseOptions
)
ModelCDRH3CAP
(in
rosetta.protocols.antibody._protocols_antibody_
)
MUST_CONTROL
(in
PrioSubtype
)
membrane_axis()
(in
rosetta.protocols.membrane.geometry._protocols_membrane_geometry_
)
modeler
(in
rosetta.protocols.stepwise.legacy
)
MUST_CONTROL
(in
ControlStrength
)
membrane_center()
(in
MembraneInfo
)
modeler
(in
rosetta.protocols.stepwise
)
MUST_CONTROL
(in
rosetta.protocols.environment.claims._protocols_environment_claims_
)
MEMBRANE_EMBED
(in
Enum
)
modeler_starting_pose_data_list()
(in
rosetta.protocols.stepwise.modeler.rna.sugar._protocols_stepwise_modeler_rna_sugar_
)
must_switch_bins()
(in
GeneralizedKICperturber
)
MEMBRANE_EMBED
(in
CacheableDataType
)
modeler_sugar()
(in
VirtualSugarJustInTimeInstantiator
)
must_switch_bins()
(in
PerturbByBins
)
MEMBRANE_FAEMBED
(in
Enum
)
modeler_sugar_at_chain_break()
(in
VirtualSugarJustInTimeInstantiator
)
MUT_COMPLEXES_LIST_FILE
(in
DDG_Bind_File_Index
)
MEMBRANE_FAEMBED
(in
CacheableDataType
)
modeler_sugar_at_five_prime()
(in
rosetta.protocols.stepwise.sampler.rna._protocols_stepwise_sampler_rna_
)
MUT_COMPLEXES_LIST_FILE
(in
DDGBindOptEData
)
Membrane_FAEmbed
(in
rosetta.core.scoring._core_scoring_
)
modeler_sugar_at_three_prime()
(in
rosetta.protocols.stepwise.sampler.rna._protocols_stepwise_sampler_rna_
)
mut_residue()
(in
MutationData
)
Membrane_FAEmbed_from_pose()
(in
rosetta.core.scoring._core_scoring_
)
models()
(in
PairingStatEntry
)
MUT_UNBOUNDS_LIST_FILE
(in
DDG_Bind_File_Index
)
Membrane_FAEmbed_from_pose()
(in
Fa_MbenvEnergy
)
modeltag()
(in
PDBInfo
)
MUT_UNBOUNDS_LIST_FILE
(in
DDGBindOptEData
)
Membrane_FAEmbed_from_pose()
(in
Fa_MbsolvEnergy
)
modifiable()
(in
CompoundFilter
)
Mutant
(in
rosetta.protocols.pmut_scan._protocols_pmut_scan_
)
Membrane_FAEmbedAP
(in
rosetta.core.scoring._core_scoring_
)
modifiable()
(in
ResId
)
mutant_score_components()
(in
ddGMover
)
Membrane_FAEmbedCAP
(in
rosetta.core.scoring._core_scoring_
)
modifiable()
(in
ParsedProtocol
)
MutantAP
(in
rosetta.protocols.pmut_scan._protocols_pmut_scan_
)
Membrane_FAPotential
(in
rosetta.core.scoring._core_scoring_
)
modifiable()
(in
AtomicContactFilter
)
MutantCAP
(in
rosetta.protocols.pmut_scan._protocols_pmut_scan_
)
Membrane_FAPotentialAP
(in
rosetta.core.scoring._core_scoring_
)
modified2original_interval_endpoints()
(in
BuildManager
)
MutantPosition
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
Membrane_FAPotentialCAP
(in
rosetta.core.scoring._core_scoring_
)
modified2original_intervals()
(in
BuildManager
)
MutantPositionAP
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
membrane_info()
(in
Conformation
)
modified_i2p_defined()
(in
BuildManager
)
MutantPositionCAP
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
membrane_jump()
(in
MembraneInfo
)
modified_i2p_new()
(in
BuildManager
)
mutants_begin()
(in
PointMutScanDriver
)
membrane_normal()
(in
MembraneInfo
)
modified_i2p_preexisting()
(in
BuildManager
)
mutants_end()
(in
PointMutScanDriver
)
membrane_normal_to_length_15()
(in
rosetta.protocols.membrane.geometry._protocols_membrane_geometry_
)
modified_i2p_undefined()
(in
BuildManager
)
mutate()
(in
DiscreteRandomizer
)
MEMBRANE_POTENTIAL
(in
Enum
)
modified_interval2movemap()
(in
BuildManager
)
mutate()
(in
EntityRandomizer
)
MEMBRANE_POTENTIAL
(in
CacheableDataType
)
modified_match_positions()
(in
AddAllPositionsMPM
)
mutate()
(in
Mutate1Randomizer
)
membrane_rsd_num()
(in
MembraneInfo
)
modified_match_positions()
(in
BfactorMPM
)
mutate()
(in
PositionSpecificRandomizer
)
membrane_steepness()
(in
MembraneInfo
)
modified_match_positions()
(in
MatchPositionModifier
)
Mutate1Randomizer
(in
rosetta.protocols.genetic_algorithm._protocols_genetic_algorithm_
)
membrane_thickness()
(in
MembraneInfo
)
modified_match_positions()
(in
NumNeighborsMPM
)
Mutate1RandomizerAP
(in
rosetta.protocols.genetic_algorithm._protocols_genetic_algorithm_
)
MEMBRANE_TOPOLOGY
(in
Enum
)
modified_match_positions()
(in
RemoveNorCTermMPM
)
Mutate1RandomizerCAP
(in
rosetta.protocols.genetic_algorithm._protocols_genetic_algorithm_
)
MEMBRANE_TOPOLOGY
(in
CacheableDataType
)
modified_match_positions()
(in
SecondaryStructureMPM
)
mutate_and_relax()
(in
PointMutationCalculator
)
MembraneAbinitio
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
modified_match_positions()
(in
TaskOperationMPM
)
mutate_and_relax()
(in
MatDesPointMutationCalculator
)
MembraneAbinitioAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
modify()
(in
BuildInstruction
)
mutate_loops_for_search()
(in
rosetta.protocols.motifs._protocols_motifs_
)
MembraneAbinitioCAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
modify()
(in
BuildManager
)
mutate_position()
(in
rosetta.core.pose.rna._core_pose_rna_
)
MembraneCbetaEnergy
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
modify_after_jump()
(in
ProteinInterfaceDesignOperation
)
mutate_position_vector_for_search()
(in
rosetta.protocols.motifs._protocols_motifs_
)
MembraneCbetaEnergyAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
modify_atom_properties_from_command_line()
(in
rosetta.core.chemical._core_chemical_
)
mutate_res_if_allowed()
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
MembraneCbetaEnergyCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
modify_before_jump()
(in
ProteinInterfaceDesignOperation
)
MutateFrameworkForCluster
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
MembraneCbetaEnergyCreator
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
modify_impl()
(in
RelativeConnectRight
)
MutateFrameworkForClusterAP
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
MembraneCbetaEnergyCreatorAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
modify_pose_build_resids_from_endes_input()
(in
MatcherTask
)
MutateFrameworkForClusterCAP
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
MembraneCbetaEnergyCreatorCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
modify_relative_filters_pdb_names()
(in
Operator
)
MutateFrameworkForClusterCreator
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
MembraneCenPairEnergy
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
modify_ResId_based_object()
(in
rosetta.protocols.moves._protocols_moves_
)
MutateFrameworkForClusterCreatorAP
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
MembraneCenPairEnergyAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
modify_task()
(in
TaskFactory
)
MutateFrameworkForClusterCreatorCAP
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
MembraneCenPairEnergyCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
modify_unselected_residues()
(in
SelectResiduesWithinChainOperation
)
MutateResidue
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MembraneCenPairEnergyCreator
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
modify_was_successful()
(in
BuildInstruction
)
MutateResidueAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MembraneCenPairEnergyCreatorAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
ModifyAnnealer
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
MutateResidueCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MembraneCenPairEnergyCreatorCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
ModifyAnnealerAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
MutateResidueCreator
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MembraneCenterPerturbationMover
(in
rosetta.protocols.rigid._protocols_rigid_
)
ModifyAnnealerCAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
MutateResidueCreatorAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MembraneCenterPerturbationMoverAP
(in
rosetta.protocols.rigid._protocols_rigid_
)
ModifyAnnealerCreator
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
MutateResidueCreatorCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
MembraneCenterPerturbationMoverCAP
(in
rosetta.protocols.rigid._protocols_rigid_
)
ModifyAnnealerCreatorAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
MUTATION
(in
CompoundToken
)
MembraneData
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
ModifyAnnealerCreatorCAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
MUTATION
(in
HeaderInformation
)
MembraneDataAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
ModifyVariantTypeMover
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
mutation_label()
(in
ddGMover
)
MembraneDataCAP
(in
rosetta.core.scoring.membrane._core_scoring_membrane_
)
ModifyVariantTypeMoverAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
mutation_rate()
(in
DiscreteRandomizer
)
MembraneEmbed
(in
rosetta.core.scoring._core_scoring_
)
ModifyVariantTypeMoverCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
mutation_rate()
(in
EntityRandomizer
)
MembraneEmbed_from_pose()
(in
rosetta.core.scoring._core_scoring_
)
ModifyVariantTypeMoverCreator
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
mutation_rate()
(in
Mutate1Randomizer
)
MembraneEmbed_from_pose()
(in
Fa_MbenvEnergy
)
ModifyVariantTypeMoverCreatorAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
mutation_rate()
(in
PositionSpecificRandomizer
)
MembraneEmbedAP
(in
rosetta.core.scoring._core_scoring_
)
ModifyVariantTypeMoverCreatorCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
mutation_string()
(in
MutationData
)
MembraneEmbedCAP
(in
rosetta.core.scoring._core_scoring_
)
modp()
(in
rosetta.numeric.kinematic_closure._numeric_kinematic_closure_
)
mutation_string_PDB_numbering()
(in
MutationData
)
MembraneEnvEnergy
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
modrf()
(in
rosetta.numeric.kinematic_closure._numeric_kinematic_closure_
)
mutation_threshold()
(in
SequenceRecoveryFilter
)
MembraneEnvEnergyAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
modules
(in
rosetta.protocols.elscripts
)
mutation_threshold()
(in
MutationsFilter
)
MembraneEnvEnergyCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MOL_ID
(in
CompoundToken
)
MutationData
(in
rosetta.protocols.pmut_scan._protocols_pmut_scan_
)
MembraneEnvEnergyCreator
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MOL_ID
(in
HeaderInformation
)
MutationDataAP
(in
rosetta.protocols.pmut_scan._protocols_pmut_scan_
)
MembraneEnvEnergyCreatorAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MolarMassFilter
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
MutationDataCAP
(in
rosetta.protocols.pmut_scan._protocols_pmut_scan_
)
MembraneEnvEnergyCreatorCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MolarMassFilterAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
mutations()
(in
SequenceRecoveryFilter
)
MembraneEnvPenalties
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MolarMassFilterCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
mutations()
(in
MutationsFilter
)
MembraneEnvPenaltiesAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MolarMassFilterCreator
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
mutations_begin()
(in
Mutant
)
MembraneEnvPenaltiesCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MolarMassFilterCreatorAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
mutations_end()
(in
Mutant
)
MembraneEnvPenaltiesCreator
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MolarMassFilterCreatorCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
MutationSetDesignOperation
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
MembraneEnvPenaltiesCreatorAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MolecularDynamics
(in
rosetta.protocols.cartesian._protocols_cartesian_
)
MutationSetDesignOperationAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
MembraneEnvPenaltiesCreatorCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MolecularDynamicsAP
(in
rosetta.protocols.cartesian._protocols_cartesian_
)
MutationSetDesignOperationCAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
MembraneEnvSmoothEnergy
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MolecularDynamicsCAP
(in
rosetta.protocols.cartesian._protocols_cartesian_
)
MutationsFilter
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
MembraneEnvSmoothEnergyAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MolecularMassFilter
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
MutationsFilterAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
MembraneEnvSmoothEnergyCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MolecularMassFilterAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
MutationsFilterCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
MembraneEnvSmoothEnergyCreator
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MolecularMassFilterCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
MutationsFilterCreator
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
MembraneEnvSmoothEnergyCreatorAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MolecularMassFilterCreator
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
MutationsFilterCreatorAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
MembraneEnvSmoothEnergyCreatorCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
MolecularMassFilterCreatorAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
MutationsFilterCreatorCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
MembraneInfo
(in
rosetta.core.conformation.membrane._core_conformation_membrane_
)
MolecularMassFilterCreatorCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
my_residue_pair_energy()
(in
DirectReadoutEnergy
)
MembraneInfoAP
(in
rosetta.core.conformation.membrane._core_conformation_membrane_
)
MolecularSurfaceCalculator
(in
rosetta.core.scoring.sc._core_scoring_sc_
)
mysql
(in
e
)
MembraneInfoCAP
(in
rosetta.core.conformation.membrane._core_conformation_membrane_
)
MolecularSurfaceCalculatorAP
(in
rosetta.core.scoring.sc._core_scoring_sc_
)
mysql
(in
DatabaseMode
)
MembraneJump
(in
rosetta.protocols.jumping._protocols_jumping_
)
MolecularSurfaceCalculatorCAP
(in
rosetta.core.scoring.sc._core_scoring_sc_
)
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