Class ConstantLengthFragSet

__init__( (object)arg1, (int)frag_length) -> None :
    core/fragment/ConstantLengthFragSet.hh:71

    C++ signature :
        void __init__(_object*,unsigned long)

__init__( (object)arg1, (ConstantLengthFragSet)) -> None :
    A set of fragments that contains fragments of a constant length read
    in from a fragment file.
    this object is a simple implementation of the FragSet
    for custom fragments, check out https://robetta.bakerlab.org/fragmentsubmit.jsp
    example:
        ninemers = ConstantLengthFragSet(9)
        ninemers.read_fragment_file("test9_fragments")
    See also:
        Pose
        ClassicFragmentMover
    

    C++ signature :
        void __init__(_object*,core::fragment::ConstantLengthFragSet)

__init__( (object)arg1, (int)frag_length, (str)filename) -> None :
    core/fragment/ConstantLengthFragSet.hh:75

    C++ signature :
        void __init__(_object*,unsigned long,std::string)

__init__( (object)arg1) -> None :

    C++ signature :
        void __init__(_object*)

__init__( (object)arg1, (FragSet)fragments) -> None :
    core/fragment/ConstantLengthFragSet.hh:81

    C++ signature :
        void __init__(_object*,core::fragment::FragSet)

Overrides: object.__init__

begin( (ConstantLengthFragSet)arg1) -> ConstFrameIterator :
    iterate over contents
    

    C++ signature :
        core::fragment::ConstFrameIterator begin(core::fragment::ConstantLengthFragSet {lvalue})

Overrides: FragSet.begin

clone( (ConstantLengthFragSet)arg1) -> FragSet :
    core/fragment/ConstantLengthFragSet.hh:83

    C++ signature :
        boost::shared_ptr<core::fragment::FragSet> clone(core::fragment::ConstantLengthFragSet {lvalue})

Overrides: FragSet.clone

empty( (ConstantLengthFragSet)arg1) -> bool :
    core/fragment/ConstantLengthFragSet.hh:146

    C++ signature :
        bool empty(core::fragment::ConstantLengthFragSet {lvalue})

Overrides: FragSet.empty

empty_clone( (ConstantLengthFragSet)arg1) -> FragSet :
    core/fragment/ConstantLengthFragSet.hh:88

    C++ signature :
        boost::shared_ptr<core::fragment::FragSet> empty_clone(core::fragment::ConstantLengthFragSet {lvalue})

Overrides: FragSet.empty_clone

end( (ConstantLengthFragSet)arg1) -> ConstFrameIterator :
    core/fragment/ConstantLengthFragSet.hh:140

    C++ signature :
        core::fragment::ConstFrameIterator end(core::fragment::ConstantLengthFragSet {lvalue})

Overrides: FragSet.end

nonconst_begin( (ConstantLengthFragSet)arg1) -> FrameIterator :
    core/fragment/ConstantLengthFragSet.hh:143

    C++ signature :
        core::fragment::FrameIterator nonconst_begin(core::fragment::ConstantLengthFragSet {lvalue})

Overrides: FragSet.nonconst_begin

nonconst_end( (ConstantLengthFragSet)arg1) -> FrameIterator :
    core/fragment/ConstantLengthFragSet.hh:144

    C++ signature :
        core::fragment::FrameIterator nonconst_end(core::fragment::ConstantLengthFragSet {lvalue})

Overrides: FragSet.nonconst_end

overlapping_with_region( (ConstantLengthFragSet)arg1, (MoveMap)mm, (int)start, (int)end, (int)min_overlap, (int)min_length, (FrameList)frames) -> int :
    returns the number and list of all fragment alignment frames that somehow overlap with the given region
    (also allows those frames that start before the region and reach into it)
    

    C++ signature :
        unsigned long overlapping_with_region(core::fragment::ConstantLengthFragSet {lvalue},core::kinematics::MoveMap,unsigned long,unsigned long,unsigned long,unsigned long,core::fragment::FrameList {lvalue})

Overrides: FragSet.overlapping_with_region

read_fragment_file( (ConstantLengthFragSet)arg1, (str)filename [, (int)top25=0 [, (int)ncopies=1 [, (bool)bAnnotation=False]]]) -> None :
    Loads the contents of  <filename>  into the ConstantLengthFragSet
    example:
        ninemers.read_fragment_file("test9_fragments")
    See also:
        ConstantLengthFragSet
        Pose
        Pose.omega
        Pose.phi
        Pose.psi
        ClassicFragmentMover
    

    C++ signature :
        void read_fragment_file(core::fragment::ConstantLengthFragSet {lvalue},std::string [,unsigned long=0 [,unsigned long=1 [,bool=False]]])

read_fragment_stream( (ConstantLengthFragSet)arg1, (object)data [, (int)top25=0 [, (int)ncopies=1 [, (bool)bAnnotation=False]]]) -> None :
    core/fragment/ConstantLengthFragSet.hh:106

    C++ signature :
        void read_fragment_stream(core::fragment::ConstantLengthFragSet {lvalue},utility::io::izstream {lvalue} [,unsigned long=0 [,unsigned long=1 [,bool=False]]])

region( (ConstantLengthFragSet)arg1, (MoveMap)mm, (int)start, (int)end, (int), (int), (FrameList)frames) -> int :
    there is only one Frame per position, end / max_overlap are ignored
    

    C++ signature :
        unsigned long region(core::fragment::ConstantLengthFragSet {lvalue},core::kinematics::MoveMap,unsigned long,unsigned long,unsigned long,unsigned long,core::fragment::FrameList {lvalue})

Overrides: FragSet.region