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Package rosetta :: Package core :: Package fragment :: Module _core_fragment_ :: Class DownJumpSRFD
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Class DownJumpSRFD

       object --+        
                |        
      ??.instance --+    
                    |    
SingleResidueFragData --+
                        |
                       DownJumpSRFD

core/fragment/JumpSRFD.hh:124

Instance Methods [hide private]
 
__init__(...)
__init__( (object)arg1 [, (str)sequence='X']) -> None : core/fragment/JumpSRFD.hh:129
 
apply(...)
apply( (DownJumpSRFD)arg1, (Pose), (int)intra_frame_pos, (Frame)) -> bool : the seq_pos is hijacked for the rt_nr
 
apply_ss(...)
apply_ss( (DownJumpSRFD)arg1, (str), (int), (Frame)) -> bool : core/fragment/JumpSRFD.hh:173
 
clone(...)
clone( (DownJumpSRFD)arg1) -> SingleResidueFragData : clone
 
create(...)
create( (DownJumpSRFD)arg1) -> SingleResidueFragData : create a new instance of this object
 
is_applicable(...)
is_applicable( (DownJumpSRFD)arg1, (MoveMap), (int)pos, (Frame)) -> bool : core/fragment/JumpSRFD.hh:177
 
is_compatible(...)
is_compatible( (DownJumpSRFD)arg1, (SingleResidueFragData)) -> bool : core/fragment/JumpSRFD.hh:176
 
read(...)
read( (DownJumpSRFD)arg1, (std_istream)in) -> None : core/fragment/JumpSRFD.hh:231
 
read_data(...)
read_data( (DownJumpSRFD)arg1, (std_istream)) -> None : Default implementation: noop
 
secstruct(...)
secstruct( (DownJumpSRFD)arg1) -> str : core/fragment/SingleResidueFragData.hh:132
 
set_jump(...)
set_jump( (DownJumpSRFD)arg1, (RT)setting) -> None : set value of jump
 
set_standard_stub_atoms(...)
set_standard_stub_atoms( (DownJumpSRFD)arg1) -> None : core/fragment/JumpSRFD.hh:167
 
set_stub_atoms(...)
set_stub_atoms( (DownJumpSRFD)arg1, (vector1_string)downstream, (vector1_string)upstream) -> None : core/fragment/JumpSRFD.hh:163
 
show(...)
show( (DownJumpSRFD)arg1, (OStream)out) -> None : core/fragment/JumpSRFD.hh:228
 
steal(...)
steal( (DownJumpSRFD)arg1, (Pose), (int)pos, (Frame)) -> bool : core/fragment/JumpSRFD.hh:175
 
type(...)
type( (DownJumpSRFD)arg1) -> str : core/fragment/JumpSRFD.hh:219

Inherited from SingleResidueFragData: __reduce__, __str__, sequence, set_sequence

Inherited from unreachable.instance: __new__

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __subclasshook__

Static Methods [hide private]
str :
_static_type_name()
core/fragment/JumpSRFD.hh:223
Class Variables [hide private]

Inherited from SingleResidueFragData: __instance_size__

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(...)
(Constructor)

  

__init__( (object)arg1 [, (str)sequence='X']) -> None :
    core/fragment/JumpSRFD.hh:129

    C++ signature :
        void __init__(_object* [,char='X'])

__init__( (object)arg1, (DownJumpSRFD)) -> None :
    core/fragment/JumpSRFD.hh:124

    C++ signature :
        void __init__(_object*,core::fragment::DownJumpSRFD)

__init__( (object)arg1, (RT)rt, (vector1_string)downstream_stub_atoms, (vector1_string)upstream_stub_atoms, (str)sequence) -> None :
    core/fragment/JumpSRFD.hh:135

    C++ signature :
        void __init__(_object*,core::kinematics::RT,utility::vector1<std::string, std::allocator<std::string> >,utility::vector1<std::string, std::allocator<std::string> >,char)
Overrides: object.__init__

_static_type_name()
Static Method

  
    core/fragment/JumpSRFD.hh:223

    C++ signature :
        std::string _static_type_name()
Returns: str :
Overrides: SingleResidueFragData._static_type_name

apply(...)

  

apply( (DownJumpSRFD)arg1, (Pose), (int)intra_frame_pos, (Frame)) -> bool :
    the seq_pos is hijacked for the rt_nr
    

    C++ signature :
        bool apply(core::fragment::DownJumpSRFD {lvalue},core::pose::Pose {lvalue},unsigned long,core::fragment::Frame)

apply( (DownJumpSRFD)arg1, (Pose), (int)intra_frame_pos, (Frame)) -> bool :

    C++ signature :
        bool apply(DownJumpSRFD_exposer_callback {lvalue},core::pose::Pose {lvalue},unsigned long,core::fragment::Frame)

apply( (DownJumpSRFD)arg1, (MoveMap), (Pose), (int)intra_frame_pos, (Frame)) -> bool :
    core/fragment/JumpSRFD.hh:172

    C++ signature :
        bool apply(core::fragment::DownJumpSRFD {lvalue},core::kinematics::MoveMap,core::pose::Pose {lvalue},unsigned long,core::fragment::Frame)

apply( (DownJumpSRFD)arg1, (MoveMap), (Pose), (int)intra_frame_pos, (Frame)) -> bool :

    C++ signature :
        bool apply(DownJumpSRFD_exposer_callback {lvalue},core::kinematics::MoveMap,core::pose::Pose {lvalue},unsigned long,core::fragment::Frame)

apply( (DownJumpSRFD)arg1, (Pose), (int)) -> bool :
    core/fragment/JumpSRFD.hh:182

    C++ signature :
        bool apply(core::fragment::DownJumpSRFD {lvalue},core::pose::Pose {lvalue},unsigned long)

apply( (DownJumpSRFD)arg1, (Pose), (int)) -> bool :

    C++ signature :
        bool apply(DownJumpSRFD_exposer_callback {lvalue},core::pose::Pose {lvalue},unsigned long)

apply( (DownJumpSRFD)arg1, (MoveMap), (Pose), (int)) -> bool :
    for DownJumpSRFD this function should never be called, instead use Frame version
    always false
    @warning will trigger a false runtime assert
    

    C++ signature :
        bool apply(core::fragment::DownJumpSRFD {lvalue},core::kinematics::MoveMap,core::pose::Pose {lvalue},unsigned long)

apply( (DownJumpSRFD)arg1, (MoveMap), (Pose), (int)) -> bool :

    C++ signature :
        bool apply(DownJumpSRFD_exposer_callback {lvalue},core::kinematics::MoveMap,core::pose::Pose {lvalue},unsigned long)
Overrides: SingleResidueFragData.apply

apply_ss(...)

  

apply_ss( (DownJumpSRFD)arg1, (str), (int), (Frame)) -> bool :
    core/fragment/JumpSRFD.hh:173

    C++ signature :
        bool apply_ss(core::fragment::DownJumpSRFD {lvalue},std::string {lvalue},unsigned long,core::fragment::Frame)

apply_ss( (DownJumpSRFD)arg1, (str), (int), (Frame)) -> bool :

    C++ signature :
        bool apply_ss(DownJumpSRFD_exposer_callback {lvalue},std::string {lvalue},unsigned long,core::fragment::Frame)

apply_ss( (DownJumpSRFD)arg1, (str), (int)) -> bool :
    core/fragment/JumpSRFD.hh:193

    C++ signature :
        bool apply_ss(core::fragment::DownJumpSRFD {lvalue},std::string {lvalue},unsigned long)

apply_ss( (DownJumpSRFD)arg1, (str), (int)) -> bool :

    C++ signature :
        bool apply_ss(DownJumpSRFD_exposer_callback {lvalue},std::string {lvalue},unsigned long)
Overrides: SingleResidueFragData.apply_ss

clone(...)

  

clone( (DownJumpSRFD)arg1) -> SingleResidueFragData :
    clone
    

    C++ signature :
        boost::shared_ptr<core::fragment::SingleResidueFragData> clone(core::fragment::DownJumpSRFD {lvalue})

clone( (DownJumpSRFD)arg1) -> SingleResidueFragData :

    C++ signature :
        boost::shared_ptr<core::fragment::SingleResidueFragData> clone(DownJumpSRFD_exposer_callback {lvalue})
Overrides: SingleResidueFragData.clone

create(...)

  

create( (DownJumpSRFD)arg1) -> SingleResidueFragData :
    create a new instance of this object
    

    C++ signature :
        boost::shared_ptr<core::fragment::SingleResidueFragData> create(core::fragment::DownJumpSRFD {lvalue})

create( (DownJumpSRFD)arg1) -> SingleResidueFragData :

    C++ signature :
        boost::shared_ptr<core::fragment::SingleResidueFragData> create(DownJumpSRFD_exposer_callback {lvalue})
Overrides: SingleResidueFragData.create

is_applicable(...)

  

is_applicable( (DownJumpSRFD)arg1, (MoveMap), (int)pos, (Frame)) -> bool :
    core/fragment/JumpSRFD.hh:177

    C++ signature :
        bool is_applicable(core::fragment::DownJumpSRFD {lvalue},core::kinematics::MoveMap,unsigned long,core::fragment::Frame)

is_applicable( (DownJumpSRFD)arg1, (MoveMap), (int)pos, (Frame)) -> bool :

    C++ signature :
        bool is_applicable(DownJumpSRFD_exposer_callback {lvalue},core::kinematics::MoveMap,unsigned long,core::fragment::Frame)

is_applicable( (DownJumpSRFD)arg1, (MoveMap), (int)) -> bool :
    core/fragment/JumpSRFD.hh:206

    C++ signature :
        bool is_applicable(core::fragment::DownJumpSRFD {lvalue},core::kinematics::MoveMap,unsigned long)

is_applicable( (DownJumpSRFD)arg1, (MoveMap), (int)) -> bool :

    C++ signature :
        bool is_applicable(DownJumpSRFD_exposer_callback {lvalue},core::kinematics::MoveMap,unsigned long)
Overrides: SingleResidueFragData.is_applicable

is_compatible(...)

  

is_compatible( (DownJumpSRFD)arg1, (SingleResidueFragData)) -> bool :
    core/fragment/JumpSRFD.hh:176

    C++ signature :
        bool is_compatible(core::fragment::DownJumpSRFD {lvalue},core::fragment::SingleResidueFragData)

is_compatible( (DownJumpSRFD)arg1, (SingleResidueFragData)) -> bool :

    C++ signature :
        bool is_compatible(DownJumpSRFD_exposer_callback {lvalue},core::fragment::SingleResidueFragData)
Overrides: SingleResidueFragData.is_compatible

read(...)

  

read( (DownJumpSRFD)arg1, (std_istream)in) -> None :
    core/fragment/JumpSRFD.hh:231

    C++ signature :
        void read(core::fragment::DownJumpSRFD {lvalue},std::istream {lvalue})

read( (DownJumpSRFD)arg1, (std_istream)in) -> None :

    C++ signature :
        void read(DownJumpSRFD_exposer_callback {lvalue},std::istream {lvalue})

read_data(...)

  

read_data( (DownJumpSRFD)arg1, (std_istream)) -> None :
    Default implementation: noop
    

    C++ signature :
        void read_data(core::fragment::DownJumpSRFD {lvalue},std::istream {lvalue})

read_data( (DownJumpSRFD)arg1, (std_istream)) -> None :

    C++ signature :
        void read_data(DownJumpSRFD_exposer_callback {lvalue},std::istream {lvalue})
Overrides: SingleResidueFragData.read_data

secstruct(...)

  

secstruct( (DownJumpSRFD)arg1) -> str :
    core/fragment/SingleResidueFragData.hh:132

    C++ signature :
        char secstruct(core::fragment::DownJumpSRFD {lvalue})

secstruct( (DownJumpSRFD)arg1) -> str :

    C++ signature :
        char secstruct(DownJumpSRFD_exposer_callback {lvalue})
Overrides: SingleResidueFragData.secstruct

set_jump(...)

  

set_jump( (DownJumpSRFD)arg1, (RT)setting) -> None :
    set value of jump
    

    C++ signature :
        void set_jump(core::fragment::DownJumpSRFD {lvalue},core::kinematics::RT)

set_standard_stub_atoms(...)

  

set_standard_stub_atoms( (DownJumpSRFD)arg1) -> None :
    core/fragment/JumpSRFD.hh:167

    C++ signature :
        void set_standard_stub_atoms(core::fragment::DownJumpSRFD {lvalue})

set_stub_atoms(...)

  

set_stub_atoms( (DownJumpSRFD)arg1, (vector1_string)downstream, (vector1_string)upstream) -> None :
    core/fragment/JumpSRFD.hh:163

    C++ signature :
        void set_stub_atoms(core::fragment::DownJumpSRFD {lvalue},utility::vector1<std::string, std::allocator<std::string> >,utility::vector1<std::string, std::allocator<std::string> >)

show(...)

  

show( (DownJumpSRFD)arg1, (OStream)out) -> None :
    core/fragment/JumpSRFD.hh:228

    C++ signature :
        void show(core::fragment::DownJumpSRFD {lvalue},std::ostream {lvalue})

show( (DownJumpSRFD)arg1, (OStream)out) -> None :

    C++ signature :
        void show(DownJumpSRFD_exposer_callback {lvalue},std::ostream {lvalue})
Overrides: SingleResidueFragData.show

steal(...)

  

steal( (DownJumpSRFD)arg1, (Pose), (int)pos, (Frame)) -> bool :
    core/fragment/JumpSRFD.hh:175

    C++ signature :
        bool steal(core::fragment::DownJumpSRFD {lvalue},core::pose::Pose,unsigned long,core::fragment::Frame)

steal( (DownJumpSRFD)arg1, (Pose), (int)pos, (Frame)) -> bool :

    C++ signature :
        bool steal(DownJumpSRFD_exposer_callback {lvalue},core::pose::Pose,unsigned long,core::fragment::Frame)

steal( (DownJumpSRFD)arg1, (Pose), (int)) -> bool :
    core/fragment/JumpSRFD.hh:199

    C++ signature :
        bool steal(core::fragment::DownJumpSRFD {lvalue},core::pose::Pose,unsigned long)

steal( (DownJumpSRFD)arg1, (Pose), (int)) -> bool :

    C++ signature :
        bool steal(DownJumpSRFD_exposer_callback {lvalue},core::pose::Pose,unsigned long)
Overrides: SingleResidueFragData.steal

type(...)

  

type( (DownJumpSRFD)arg1) -> str :
    core/fragment/JumpSRFD.hh:219

    C++ signature :
        std::string type(core::fragment::DownJumpSRFD {lvalue})

type( (DownJumpSRFD)arg1) -> str :

    C++ signature :
        std::string type(DownJumpSRFD_exposer_callback {lvalue})
Overrides: SingleResidueFragData.type

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