Package rosetta :: Package protocols :: Package analysis :: Module _protocols_analysis_

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Module _protocols_analysis_

Classes

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InterfaceAnalyzerMover
Class for analyzing interfaces of a pose.

InterfaceAnalyzerMoverAP

InterfaceAnalyzerMoverCAP

InterfaceAnalyzerMoverCreator
protocols/analysis/InterfaceAnalyzerMoverCreator.hh:22

InterfaceAnalyzerMoverCreatorAP

InterfaceAnalyzerMoverCreatorCAP

InterfaceData
All interface data.

InterfaceDataAP

InterfaceDataCAP

InterfaceRegion
protocols/analysis/InterfaceAnalyzerMover.hh:41

LoopAnalyzerMover
protocols/analysis/LoopAnalyzerMover.hh:35

LoopAnalyzerMoverAP

LoopAnalyzerMoverCAP

PackStatMover
protocols/analysis/PackStatMover.hh:33

PackStatMoverAP

PackStatMoverCAP

PeptideDeriverBasicStreamOutputter
outputs a Peptiderive report to a stream in a basic, easily parsable format

PeptideDeriverBasicStreamOutputterAP

PeptideDeriverBasicStreamOutputterCAP

PeptideDeriverEntryType
an enum specifying the type of peptide entry, when calling PeptideDeriverOuputter::peptide_entry()

PeptideDeriverFilter
implementation of the Peptiderive protocol - given a pose, it evaluates the binding energy of linear stretches, of given lengths, and indicates which of these contributes more than others to the interaction energy.

PeptideDeriverFilterAP

PeptideDeriverFilterCAP

PeptideDeriverFilterCreator
protocols/analysis/PeptideDeriverFilterCreator.hh:28

PeptideDeriverFilterCreatorAP

PeptideDeriverFilterCreatorCAP

PeptideDeriverMarkdownStreamOutputter
outputs a Markdown formatted Peptiderive report to a stream

PeptideDeriverMarkdownStreamOutputterAP

PeptideDeriverMarkdownStreamOutputterCAP

PeptideDeriverOutputter
an abstract base class for handling calculation outputs from PeptideDeriverFilter Since PeptideDeriverFilter might have a set of outputs for each residue, for each chain in each chain-pair, outputting is quite elaborate.

PeptideDeriverOutputterAP

PeptideDeriverOutputterCAP

PeptideDeriverOutputterContainer
a container class which holds a list of PeptideDeriverOutputter instances and delegates calls to those.

PeptideDeriverOutputterContainerAP

PeptideDeriverOutputterContainerCAP

PeptideDeriverPoseOutputter
outputs poses at different points of the Peptiderive protocol, according to the given set of options

PeptideDeriverPoseOutputterAP

PeptideDeriverPoseOutputterCAP

PeptideDeriverReportFormat
the output format that PeptideDeriverFilter reports in

PerResidueInterfaceData
All per residue interface data and residue averages.

PerResidueInterfaceDataAP

PerResidueInterfaceDataCAP

__CPP_InterfaceAnalyzerMoverCreator__

__CPP_InterfaceAnalyzerMover__

__CPP_LoopAnalyzerMover__

__CPP_PackStatMover__

__CPP_PeptideDeriverBasicStreamOutputter__

__CPP_PeptideDeriverFilterCreator__

__CPP_PeptideDeriverFilter__

__CPP_PeptideDeriverMarkdownStreamOutputter__

__CPP_PeptideDeriverOutputterContainer__

__CPP_PeptideDeriverOutputter__

__CPP_PeptideDeriverPoseOutputter__

Variables

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ET_BEST_CYCLIC = rosetta.protocols.analysis._protocols_analysi...

ET_BEST_LINEAR = rosetta.protocols.analysis._protocols_analysi...

ET_GENERAL = rosetta.protocols.analysis._protocols_analysis_.P...

PRF_BASIC = rosetta.protocols.analysis._protocols_analysis_.Pe...

PRF_MARKDOWN = rosetta.protocols.analysis._protocols_analysis_...

__package__ = None

side1 = rosetta.protocols.analysis._protocols_analysis_.Interf...

side2 = rosetta.protocols.analysis._protocols_analysis_.Interf...

total = rosetta.protocols.analysis._protocols_analysis_.Interf...

Variables Details

[hide private]

ET_BEST_CYCLIC

Value:

rosetta.protocols.analysis._protocols_analysis_.PeptideDeriverEntryTyp
e.ET_BEST_CYCLIC

ET_BEST_LINEAR

Value:

rosetta.protocols.analysis._protocols_analysis_.PeptideDeriverEntryTyp
e.ET_BEST_LINEAR

ET_GENERAL

Value:

rosetta.protocols.analysis._protocols_analysis_.PeptideDeriverEntryTyp
e.ET_GENERAL

PRF_BASIC

Value:

rosetta.protocols.analysis._protocols_analysis_.PeptideDeriverReportFo
rmat.PRF_BASIC

PRF_MARKDOWN

Value:

rosetta.protocols.analysis._protocols_analysis_.PeptideDeriverReportFo
rmat.PRF_MARKDOWN

side1

Value:

rosetta.protocols.analysis._protocols_analysis_.InterfaceRegion.side1

side2

Value:

rosetta.protocols.analysis._protocols_analysis_.InterfaceRegion.side2

total

Value:

rosetta.protocols.analysis._protocols_analysis_.InterfaceRegion.total