Module _protocols_stepwise_modeler_protein_

contains_protein( (Pose)pose) -> bool :
    protocols/stepwise/modeler/protein/util.hh:63

    C++ signature :
        bool contains_protein(core::pose::Pose)

figure_out_protein_modeling_info( (Pose)pose, (int)moving_res, (vector1_Size)moving_res_list) -> None :
    protocols/stepwise/modeler/protein/util.hh:53

    C++ signature :
        void figure_out_protein_modeling_info(core::pose::Pose,unsigned long,utility::vector1<unsigned long, std::allocator<unsigned long> > {lvalue})

get_bridge_res( (Pose)pose, (vector1_Size)moving_res_list) -> vector1_Size :
    protocols/stepwise/modeler/protein/util.hh:57

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > get_bridge_res(core::pose::Pose,utility::vector1<unsigned long, std::allocator<unsigned long> >)

initialize_input_streams( (object)input_streams) -> None :
    protocols/stepwise/modeler/protein/InputStreamWithResidueInfo.hh:38

    C++ signature :
        void initialize_input_streams(utility::vector1<boost::shared_ptr<protocols::stepwise::modeler::protein::InputStreamWithResidueInfo>, std::allocator<boost::shared_ptr<protocols::stepwise::modeler::protein::InputStreamWithResidueInfo> > > {lvalue})

initialize_input_streams_with_residue_info( (object)input_streams_with_residue_info, (vector1_string)pdb_tags, (vector1_string)silent_files_in, (vector1_Size)input_res, (vector1_Size)input_res2) -> None :
    protocols/stepwise/modeler/protein/InputStreamWithResidueInfo.hh:46

    C++ signature :
        void initialize_input_streams_with_residue_info(utility::vector1<boost::shared_ptr<protocols::stepwise::modeler::protein::InputStreamWithResidueInfo>, std::allocator<boost::shared_ptr<protocols::stepwise::modeler::protein::InputStreamWithResidueInfo> > > {lvalue},utility::vector1<std::string, std::allocator<std::string> >,utility::vector1<std::string, std::allocator<std::string> >,utility::vector1<unsigned long, std::allocator<unsigned long> >,utility::vector1<unsigned long, std::allocator<unsigned long> >)

just_protein( (vector1_Size)res_list, (Pose)pose) -> vector1_Size :
    protocols/stepwise/modeler/protein/util.hh:60

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > just_protein(utility::vector1<unsigned long, std::allocator<unsigned long> >,core::pose::Pose)

setup_pose_input_stream( (object)option_s1, (object)option_silent1, (object)option_tags1) -> PoseInputStream :
    protocols/stepwise/modeler/protein/InputStreamWithResidueInfo.hh:52

    C++ signature :
        boost::shared_ptr<core::import_pose::pose_stream::PoseInputStream> setup_pose_input_stream(utility::options::StringVectorOption,utility::options::StringVectorOption,utility::options::StringVectorOption)

setup_protein_backbone_atom_id_map( (Pose)pose_1, (Pose)pose_2, (int)base_res, (int)base_res2, (AtomID_Map_T_core_id_AtomID_T)atom_ID_map) -> None :
    protocols/stepwise/modeler/protein/util.hh:48

    C++ signature :
        void setup_protein_backbone_atom_id_map(core::pose::Pose,core::pose::Pose,unsigned long,unsigned long,core::id::AtomID_Map<core::id::AtomID> {lvalue})

setup_protein_backbone_atom_id_map( (Pose)pose_1, (Pose)pose_2, (int)base_res, (AtomID_Map_T_core_id_AtomID_T)atom_ID_map) -> None :
    protocols/stepwise/modeler/protein/util.hh:40

    C++ signature :
        void setup_protein_backbone_atom_id_map(core::pose::Pose,core::pose::Pose,unsigned long,core::id::AtomID_Map<core::id::AtomID> {lvalue})