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L
L
(in
rosetta.protocols.features
)
last_proposal_density_ratio()
(in
MonteCarloReset
)
load_into_pose()
(in
ResidueTotalScoresFeatures
)
L
(in
rosetta.protocols.features._protocols_features_
)
last_proposal_density_ratio()
(in
MonteCarloTest
)
load_into_pose()
(in
ResidueTypesFeatures
)
L
(in
RamachandranHash
)
last_proposal_density_ratio()
(in
MutateResidue
)
load_into_pose()
(in
RotamerBoltzmannWeightFeatures
)
l1
(in
CDRNameEnum
)
last_proposal_density_ratio()
(in
O2M_MutateMover
)
load_into_pose()
(in
RotamerFeatures
)
l1
(in
rosetta.protocols.antibody._protocols_antibody_
)
last_proposal_density_ratio()
(in
PDBReloadMover
)
load_into_pose()
(in
RotamerRecoveryFeatures
)
l1
(in
rosetta.protocols.antibody
)
last_proposal_density_ratio()
(in
PSSM2BfactorMover
)
load_into_pose()
(in
RuntimeFeatures
)
L1_10_1
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
PackRotamersMover
)
load_into_pose()
(in
SaltBridgeFeatures
)
L1_10_1
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
PackRotamersMoverLazy
)
load_into_pose()
(in
ScoreFunctionFeatures
)
L1_10_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
PeptideStapleMover
)
load_into_pose()
(in
ScoreTypeFeatures
)
L1_10_2
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
PeriodicBoxMover
)
load_into_pose()
(in
ScreeningFeatures
)
L1_10_2
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
ProlineFixMover
)
load_into_pose()
(in
SecondaryStructureSegmentFeatures
)
L1_10_2
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
RandomOmegaFlipMover
)
load_into_pose()
(in
SmotifFeatures
)
L1_11_1
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
RandomTorsionMover
)
load_into_pose()
(in
StructureFeatures
)
L1_11_1
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
RepackSidechainsMover
)
load_into_pose()
(in
StructureScoresFeatures
)
L1_11_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
RepeatPropagationMover
)
load_into_pose()
(in
TaskOperationFeatures
)
L1_11_2
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
ReportEffectivePKA
)
load_into_pose()
(in
TotalScoreFeatures
)
L1_11_2
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
RepulsiveOnlyMover
)
load_into_pose()
(in
TrajectoryMapFeatures
)
L1_11_2
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
ResetBaselineMover
)
load_into_pose()
(in
UnrecognizedAtomFeatures
)
L1_11_3
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
ResidueTypeConstraintMover
)
load_into_pose()
(in
WaterFeatures
)
L1_11_3
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
ReturnSidechainMover
)
load_into_pose()
(in
ConcurrencyTest
)
L1_11_3
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
RingConformationMover
)
load_into_pose()
(in
HelixBundleFeatures
)
L1_12_1
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
RotamerTrialsMinMover
)
load_into_pose()
(in
SandwichFeatures
)
L1_12_1
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
RotamerTrialsMover
)
load_into_pose()
(in
StrandBundleFeatures
)
L1_12_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
RotamerizeMover
)
load_larmord_neighbor_atoms()
(in
RNA_ChemicalShiftPotential
)
L1_12_2
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
SaneMinMover
)
load_larmord_parameters()
(in
RNA_ChemicalShiftPotential
)
L1_12_2
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
ScoreMover
)
load_larmord_reference_shifts()
(in
RNA_ChemicalShiftPotential
)
L1_12_2
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
SequenceProfileMover
)
load_larmord_weights()
(in
RNA_ChemicalShiftPotential
)
L1_12_3
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
SetReturningPackRotamersMover
)
load_lib()
(in
HPool_RMSD
)
L1_12_3
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
SetTorsion
)
load_loop_definitions()
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
L1_12_3
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
ShakeStructureMover
)
load_mergeddb()
(in
LoopHashLibrary
)
L1_13_1
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
ShearMover
)
load_motifs()
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
L1_13_1
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
ShortBackrubMover
)
load_options_from_option_system()
(in
DatabaseJobInputter
)
L1_13_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
SmallMover
)
load_options_from_option_system()
(in
DatabaseJobOutputter
)
L1_13_2
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
SuperimposeMover
)
load_pdb_id_from_file()
(in
PdbIdChunkFilter
)
L1_13_2
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
SwitchChainOrderMover
)
load_perturber_bin_params()
(in
GeneralizedKIC
)
L1_13_2
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
SwitchResidueTypeSetMover
)
load_pose()
(in
ProteinSilentReport
)
L1_14_1
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
TailsScoreMover
)
load_pose_allocate_memory()
(in
TMalign
)
L1_14_1
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
TaskAwareMinMover
)
load_poses()
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
L1_14_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
TorsionDOFMover
)
load_pssm_data()
(in
ReportPSSMDifferences
)
L1_14_2
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
TorsionSetMover
)
load_s_and_l()
(in
rosetta.protocols.jobdist._protocols_jobdist_
)
L1_14_2
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
Tumble
)
load_s_and_l()
(in
rosetta.protocols.stepwise.sampler.protein._protocols_stepwise_sampler_protein_
)
L1_14_2
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
UniformRotationMover
)
load_silent_file()
(in
KClusterData
)
L1_15_1
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
UniformTranslationMover
)
load_silent_files()
(in
KClusterData
)
L1_15_1
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
VirtualRootMover
)
load_tag()
(in
StructureFeatures
)
L1_15_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
ddG
)
load_templates_from_pdbs()
(in
Ab_TemplateInfo
)
L1_15_2
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
AsymFoldandDockMoveRbJumpMover
)
load_trial_number_from_checkpoint()
(in
GenericMonteCarloMover
)
L1_15_2
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
AsymFoldandDockRbTrialMover
)
load_unboundrot()
(in
rosetta.core.pack.dunbrack._core_pack_dunbrack_
)
L1_15_2
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
InitializeByBins
)
LoadDensityMapMover
(in
rosetta.protocols.cryst._protocols_cryst_
)
L1_16_1
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
PerturbByBins
)
LoadDensityMapMoverAP
(in
rosetta.protocols.cryst._protocols_cryst_
)
L1_16_1
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
ChiralMover
)
LoadDensityMapMoverCAP
(in
rosetta.protocols.cryst._protocols_cryst_
)
L1_16_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
HbsPatcher
)
LoadDensityMapMoverCreator
(in
rosetta.protocols.cryst._protocols_cryst_
)
L1_17_1
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
OopDPuckMinusMover
)
LoadDensityMapMoverCreatorAP
(in
rosetta.protocols.cryst._protocols_cryst_
)
L1_17_1
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
OopDPuckPlusMover
)
LoadDensityMapMoverCreatorCAP
(in
rosetta.protocols.cryst._protocols_cryst_
)
L1_17_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
OopMover
)
loader_type()
(in
DatabaseSessionLoaderCreator
)
L1ScoringScheme
(in
rosetta.core.sequence._core_sequence_
)
last_proposal_density_ratio()
(in
OopPatcher
)
loader_type()
(in
ResourceLoaderCreator
)
L1ScoringSchemeAP
(in
rosetta.core.sequence._core_sequence_
)
last_proposal_density_ratio()
(in
OopPuckMinusMover
)
loader_type()
(in
ResidueLoaderCreator
)
L1ScoringSchemeCAP
(in
rosetta.core.sequence._core_sequence_
)
last_proposal_density_ratio()
(in
OopPuckPlusMover
)
loader_type()
(in
SymmDataLoaderCreator
)
l2
(in
CDRNameEnum
)
last_proposal_density_ratio()
(in
OopRandomPuckMover
)
loader_type()
(in
PoseFromPDBLoaderCreator
)
l2
(in
rosetta.protocols.antibody._protocols_antibody_
)
last_proposal_density_ratio()
(in
OopRandomSmallMover
)
loader_type()
(in
SilentFileLoaderCreator
)
l2
(in
rosetta.protocols.antibody
)
last_proposal_density_ratio()
(in
RationalMonteCarlo
)
loader_type()
(in
ElectronDensityLoaderCreator
)
L2_12_1
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
JumpRotamerSidechainMover
)
loader_type()
(in
FiberDiffractionLoaderCreator
)
L2_12_1
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
PerturbChiSidechainMover
)
loader_type()
(in
LoopHashLibraryLoaderCreator
)
L2_12_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
PerturbRotamerSidechainMover
)
loader_type()
(in
LoopsFileLoaderCreator
)
L2_12_2
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
SetChiMover
)
loader_type()
(in
LipoFileLoaderCreator
)
L2_12_2
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
SidechainMCMover
)
loader_type()
(in
SpanFileLoaderCreator
)
L2_12_2
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
SidechainMover
)
loader_type()
(in
SurfaceVectorLoaderCreator
)
L2_8_1
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
SidechainMoverBase
)
loadFiberDiffractionData()
(in
FiberDiffraction
)
L2_8_1
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
DetectSymmetry
)
loadGDB()
(in
GDB
)
L2_8_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
ExtractAsymmetricPoseMover
)
loadPDB()
(in
PDB
)
L2_8_2
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
ExtractAsymmetricUnitMover
)
loadPDB_Entry()
(in
PDB
)
L2_8_2
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
FaSymDockingSlideTogether
)
LoadPDBMover
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
L2_8_2
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
SetupForSymmetryMover
)
LoadPDBMoverAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
L2_8_3
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
SetupNCSMover
)
LoadPDBMoverCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
L2_8_3
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
SymDockingInitialPerturbation
)
LoadPDBMoverCreator
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
L2_8_3
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
SymDockingSlideIntoContact
)
LoadPDBMoverCreatorAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
L2_8_4
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
SymEnergyCutRotamerTrialsMover
)
LoadPDBMoverCreatorCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
L2_8_4
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
SymMinMover
)
LoadUnboundRotMover
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
L2_8_4
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
SymPackRotamersMover
)
LoadUnboundRotMoverAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
L2_8_5
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
SymRotamerTrialsMover
)
LoadUnboundRotMoverCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
L2_8_5
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
SymShakeStructureMover
)
LoadUnboundRotMoverCreator
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
L2_8_5
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
SymmetricRMSMover
)
LoadUnboundRotMoverCreatorAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
l3
(in
CDRNameEnum
)
last_proposal_density_ratio()
(in
TaskAwareSymMinMover
)
LoadUnboundRotMoverCreatorCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
l3
(in
rosetta.protocols.antibody._protocols_antibody_
)
last_proposal_density_ratio()
(in
StepWiseProteinMinimizer
)
loadWeightBias3()
(in
ANN
)
l3
(in
rosetta.protocols.antibody
)
last_proposal_density_ratio()
(in
StepWiseProteinPoseSetup
)
loadWeights()
(in
ANN
)
L3_10_1
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
StepWiseRNA_PoseSetup
)
local2global()
(in
Stub
)
L3_10_1
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
StepWiseConnectionSampler
)
local_name()
(in
FileName
)
L3_10_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
StepWiseMinimizer
)
local_perturb()
(in
BackboneTorsionSampler
)
L3_10_cis7_8_1
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
StepWiseModeler
)
local_pos1()
(in
JumpClaim
)
L3_10_cis7_8_1
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
SideChainCopier
)
local_pos2()
(in
JumpClaim
)
L3_10_cis7_8_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
StepWisePacker
)
local_position()
(in
BBClaim
)
L3_10_cis8_1
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
PolarHydrogenPacker
)
local_position()
(in
LegacyRootClaim
)
L3_10_cis8_1
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
PrecomputedLibraryMover
)
local_positions()
(in
EnvLabelSelector
)
L3_10_cis8_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
StepWiseProteinBackboneSampler
)
local_redock_only()
(in
StepWiseMonteCarloOptions
)
L3_11_1
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
StepWiseProteinCCD_Closer
)
local_rotid_for_rotamer()
(in
FlexbbRotamerSets
)
L3_11_1
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
StepWiseProteinCCD_MultiPoseCloser
)
local_rotid_for_rotamer_on_moltenres()
(in
FlexbbRotamerSets
)
L3_11_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
StepWiseProteinKIC_LoopBridger
)
local_rotid_start_for_moltenres_in_bbconf()
(in
FlexbbRotamerSets
)
L3_11_cis7_1
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
BulgeApplyMover
)
local_variable()
(in
IterativeVectorExpression
)
L3_11_cis7_1
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
BulgeUnApplyMover
)
LocalCoordinateConstraint
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
L3_11_cis7_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
RNA_ChainClosureChecker
)
LocalCoordinateConstraintAP
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
L3_12_1
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
RNA_HelixAssembler
)
LocalCoordinateConstraintCAP
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
L3_12_1
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
O2PrimePacker
)
LocalCoordinateConstraintCreator
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
L3_12_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
MultiPhosphateSampler
)
LocalCoordinateConstraintCreatorAP
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
L3_13_1
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
PhosphateMover
)
LocalCoordinateConstraintCreatorCAP
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
L3_13_1
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
SugarInstantiateMover
)
LocalInserter
(in
rosetta.protocols.loophash._protocols_loophash_
)
L3_13_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
SugarVirtualizeMover
)
LocalInserter_SimpleMin
(in
rosetta.protocols.loophash._protocols_loophash_
)
L3_7_1
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
VirtualSugarJustInTimeInstantiator
)
LocalInserter_SimpleMinAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
L3_7_1
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
VirtualSugarSampler
)
LocalInserter_SimpleMinCAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
L3_7_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
VirtualSugarSamplerFromStringList
)
LocalInserterAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
L3_8_1
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
StepWiseMonteCarlo
)
LocalInserterCAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
L3_8_1
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
AddMover
)
LocalPosition
(in
rosetta.core.environment._core_environment_
)
L3_8_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
AddOrDeleteMover
)
LocalPositionAP
(in
rosetta.core.environment._core_environment_
)
L3_8_2
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
DeleteMover
)
LocalPositionCAP
(in
rosetta.core.environment._core_environment_
)
L3_8_2
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
FromScratchMover
)
LocalRelax
(in
rosetta.protocols.relax._protocols_relax_
)
L3_8_2
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
ResampleMover
)
LocalRelaxAP
(in
rosetta.protocols.relax._protocols_relax_
)
L3_8_cis6_1
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
StepWiseMasterMover
)
LocalRelaxCAP
(in
rosetta.protocols.relax._protocols_relax_
)
L3_8_cis6_1
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
RNA_AddDeleteMonteCarlo
)
LocalRelaxCreator
(in
rosetta.protocols.relax._protocols_relax_
)
L3_8_cis6_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
RNA_O2PrimeMover
)
LocalRelaxCreatorAP
(in
rosetta.protocols.relax._protocols_relax_
)
L3_9_1
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
RNA_TorsionMover
)
LocalRelaxCreatorCAP
(in
rosetta.protocols.relax._protocols_relax_
)
L3_9_1
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
JumpStepWiseSampler
)
locate_resource_stream()
(in
ResourceLocator
)
L3_9_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
MC_Comb
)
locate_resource_stream()
(in
DatabaseResourceLocator
)
L3_9_2
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
MC_OneTorsion
)
locate_resource_stream()
(in
FileListResourceLocator
)
L3_9_2
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
NoOpStepWiseSampler
)
locate_resource_stream()
(in
FileSystemResourceLocator
)
L3_9_2
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
StepWiseSamplerAny
)
locate_resource_stream()
(in
NullResourceLocator
)
L3_9_cis6_1
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
StepWiseSamplerComb
)
locate_rosetta_database()
(in
rosetta.core.init._core_init_
)
L3_9_cis6_1
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
StepWiseSamplerOneTorsion
)
location()
(in
KDNode
)
L3_9_cis6_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
StepWiseSamplerOneValue
)
location()
(in
KDPoint
)
L3_9_cis7_1
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
StepWiseSamplerOneValueComb
)
location_in_parent_node()
(in
InvrotTreeNodeBase
)
L3_9_cis7_1
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
StepWiseSamplerSized
)
locator
(in
rosetta.basic.resource_manager
)
L3_9_cis7_1
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
StepWiseSamplerSizedAny
)
locator_tag()
(in
ResourceLocator
)
L3_9_cis7_2
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
StepWiseSamplerSizedComb
)
locator_tag()
(in
DatabaseResourceLocator
)
L3_9_cis7_2
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
CopyDofStepWiseSampler
)
locator_tag()
(in
FileListResourceLocator
)
L3_9_cis7_2
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
ResidueAlternativeStepWiseSampler
)
locator_tag()
(in
FileSystemResourceLocator
)
L3_9_cis7_3
(in
rosetta.protocols.antibody.clusters
)
last_proposal_density_ratio()
(in
ResidueAlternativeStepWiseSamplerComb
)
locator_tag()
(in
NullResourceLocator
)
L3_9_cis7_3
(in
CDRClusterEnum
)
last_proposal_density_ratio()
(in
ResidueListStepWiseSampler
)
locator_type()
(in
ResourceLocatorCreator
)
L3_9_cis7_3
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
last_proposal_density_ratio()
(in
InputStreamStepWiseSampler
)
locator_type()
(in
DatabaseResourceLocatorCreator
)
l4
(in
CDRNameEnum
)
last_proposal_density_ratio()
(in
ProteinBetaAntiParallelStepWiseSampler
)
locator_type()
(in
FileListResourceLocatorCreator
)
l4
(in
rosetta.protocols.antibody._protocols_antibody_
)
last_proposal_density_ratio()
(in
ProteinFragmentStepWiseSampler
)
locator_type()
(in
FileSystemResourceLocatorCreator
)
l4
(in
rosetta.protocols.antibody
)
last_proposal_density_ratio()
(in
ProteinMainChainStepWiseSampler
)
locator_type()
(in
NullResourceLocatorCreator
)
L_AA
(in
rosetta
)
last_proposal_density_ratio()
(in
RigidBodyStepWiseSampler
)
log()
(in
rosetta.numeric._numeric_
)
L_AA
(in
rosetta.core.chemical
)
last_proposal_density_ratio()
(in
RigidBodyStepWiseSamplerWithResidueAlternatives
)
log()
(in
QuotaDebug
)
L_AA
(in
rosetta.core.chemical._core_chemical_
)
last_proposal_density_ratio()
(in
RigidBodyStepWiseSamplerWithResidueList
)
log_angles()
(in
LogFilePerturber
)
L_AA
(in
ResidueProperty
)
last_proposal_density_ratio()
(in
RNA_ChiStepWiseSampler
)
log_error()
(in
TokenSet
)
L_chain_last_loop
(in
rosetta.protocols.antibody
)
last_proposal_density_ratio()
(in
RNA_KIC_Sampler
)
log_lengths()
(in
LogFilePerturber
)
L_chain_last_loop
(in
CDRNameEnum
)
last_proposal_density_ratio()
(in
RNA_KinematicCloser
)
log_torsions()
(in
LogFilePerturber
)
L_chain_last_loop
(in
rosetta.protocols.antibody._protocols_antibody_
)
last_proposal_density_ratio()
(in
RNA_MC_MultiSuite
)
logarithm()
(in
Operator
)
L_CHIRALITY
(in
rosetta.protocols.simple_moves.chiral
)
last_proposal_density_ratio()
(in
RNA_MC_Sugar
)
logdgaussian()
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
L_CHIRALITY
(in
Chirality
)
last_proposal_density_ratio()
(in
RNA_MC_Suite
)
logdgaussian_deriv()
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
L_CHIRALITY
(in
rosetta.protocols.simple_moves.chiral._protocols_simple_moves_chiral_
)
last_proposal_density_ratio()
(in
RNA_NucleosideStepWiseSampler
)
LogFilePerturber
(in
rosetta.protocols.kinematic_closure.perturbers._protocols_kinematic_closure_perturbers_
)
L_SS
(in
rosetta.protocols.comparative_modeling.features
)
last_proposal_density_ratio()
(in
RNA_SugarStepWiseSampler
)
LogFilePerturberAP
(in
rosetta.protocols.kinematic_closure.perturbers._protocols_kinematic_closure_perturbers_
)
L_SS
(in
rosetta.protocols.comparative_modeling.features._protocols_comparative_modeling_features_
)
last_proposal_density_ratio()
(in
RNA_SuiteStepWiseSampler
)
LogFilePerturberCAP
(in
rosetta.protocols.kinematic_closure.perturbers._protocols_kinematic_closure_perturbers_
)
L_SS
(in
SSType
)
last_proposal_density_ratio()
(in
StepWiseCSA_JobDistributor
)
LoggedFragmentMover
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
L_SUGAR
(in
rosetta
)
last_proposal_density_ratio()
(in
StepWiseJobDistributor
)
LoggedFragmentMoverAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
L_SUGAR
(in
rosetta.core.chemical
)
last_proposal_density_ratio()
(in
StepWiseMonteCarloJobDistributor
)
LoggedFragmentMoverCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
L_SUGAR
(in
rosetta.core.chemical._core_chemical_
)
last_proposal_density_ratio()
(in
CentroidRelaxMover
)
logger
(in
rosetta
)
L_SUGAR
(in
ResidueProperty
)
last_proposal_density_ratio()
(in
FullatomRelaxMover
)
logging_support
(in
rosetta
)
label()
(in
LocalPosition
)
last_proposal_density_ratio()
(in
SurfaceDockingProtocol
)
LogicalSelectorAP
(in
rosetta.protocols.pose_selectors._protocols_pose_selectors_'
)
label()
(in
Edge
)
last_proposal_density_ratio()
(in
SurfaceOrientMover
)
LogicalSelectorCAP
(in
rosetta.protocols.pose_selectors._protocols_pose_selectors_'
)
label()
(in
MultiDimensionalHistogram
)
last_proposal_density_ratio()
(in
SymDockBaseProtocol
)
LonePairElectronAffinity
(in
GasteigerAtomTypeData
)
label()
(in
StructPerturberCM
)
last_proposal_density_ratio()
(in
SymDockProtocol
)
LonePairElectronAffinity
(in
Properties
)
label()
(in
JumpClaim
)
last_proposal_density_ratio()
(in
SymDockingHiRes
)
LonePairElectronegativityMulliken
(in
GasteigerAtomTypeData
)
label()
(in
TopologyClaimer
)
last_proposal_density_ratio()
(in
SymDockingLowRes
)
LonePairElectronegativityMulliken
(in
Properties
)
label()
(in
SequenceClaim
)
last_proposal_density_ratio()
(in
SymFoldandDockMoveRbJumpMover
)
LonePairIonizationPotential
(in
GasteigerAtomTypeData
)
label()
(in
SymmetryClaim
)
last_proposal_density_ratio()
(in
SymFoldandDockRbTrialMover
)
LonePairIonizationPotential
(in
Properties
)
label_energy()
(in
PyMOLMover
)
last_proposal_density_ratio()
(in
SymFoldandDockSlideTrialMover
)
long_range_container()
(in
Energies
)
lambda
(in
LightChainTypeEnum
)
last_proposal_density_ratio()
(in
SymInterfaceSidechainMinMover
)
long_range_energies_begin()
(in
ScoreFunction
)
lambda
(in
rosetta.protocols.antibody._protocols_antibody_
)
last_proposal_density_ratio()
(in
SymSidechainMinMover
)
long_range_energies_end()
(in
ScoreFunction
)
lambda
(in
rosetta.protocols.antibody
)
last_proposal_density_ratio()
(in
MPSymDockMover
)
long_range_interactions_exist()
(in
OnTheFlyEdge
)
lambda6
(in
LightChainTypeEnum
)
last_proposal_density_ratio()
(in
AlignPoseToInvrotTreeMover
)
long_range_interactions_exist()
(in
SymmOnTheFlyEdge
)
lambda6
(in
rosetta.protocols.antibody._protocols_antibody_
)
last_proposal_density_ratio()
(in
StoreCombinedStoredTasksMover
)
long_range_type()
(in
ConstraintsEnergy
)
lambda6
(in
rosetta.protocols.antibody
)
last_proposal_density_ratio()
(in
StoreCompoundTaskMover
)
long_range_type()
(in
CentroidDisulfideEnergy
)
LAMBEGO_IO
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
)
last_proposal_density_ratio()
(in
StoreTaskMover
)
long_range_type()
(in
DisulfideMatchingEnergy
)
LAMBEGO_IOAP
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
)
last_proposal_density_ratio()
(in
UnfoldedStateEnergyCalculatorMover
)
long_range_type()
(in
FullatomDisulfideEnergy
)
LAMBEGO_IOCAP
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
)
last_received_from()
(in
WorkUnitBase
)
long_range_type()
(in
ElecDensAllAtomCenEnergy
)
LAMBEGO_Similarity
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
last_residue()
(in
Parameters
)
long_range_type()
(in
ElecDensCenEnergy
)
LAMBEGO_SimilarityAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
last_residue()
(in
BundleParameters
)
long_range_type()
(in
ElecDensEnergy
)
LAMBEGO_SimilarityCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
last_residue()
(in
ClosureProblem
)
long_range_type()
(in
FastDensEnergy
)
landing_atom()
(in
LoopScoreInfo
)
last_residue()
(in
DofClaim
)
long_range_type()
(in
PattersonCorrEnergy
)
landing_domain()
(in
Loop
)
last_run_successful()
(in
GeneralizedKIC
)
long_range_type()
(in
ElecDensAtomwiseEnergy
)
landing_pos()
(in
Loop
)
last_section()
(in
VallLibrary
)
long_range_type()
(in
CartesianBondedEnergy
)
LargeFragWeight
(in
rosetta.protocols.topology_broker.weights._protocols_topology_broker_weights_
)
last_segment_id()
(in
BackrubMover
)
long_range_type()
(in
ContextDependentLRTwoBodyEnergy
)
LargeFragWeightAP
(in
rosetta.protocols.topology_broker.weights._protocols_topology_broker_weights_
)
last_slide_good()
(in
RigidBodyDofTransMover
)
long_range_type()
(in
ContextIndependentLRTwoBodyEnergy
)
LargeFragWeightCAP
(in
rosetta.protocols.topology_broker.weights._protocols_topology_broker_weights_
)
LAST_STAGE
(in
rosetta
)
long_range_type()
(in
GenBornEnergy
)
largest_possible_sequence_sep()
(in
MaxSeqSepConstraintSet
)
LAST_STAGE
(in
rosetta.protocols.abinitio
)
long_range_type()
(in
LongRangeTwoBodyEnergy
)
largestTargetPocketVolume()
(in
PocketGrid
)
LAST_STAGE
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
long_range_type()
(in
PoissonBoltzmannEnergy
)
last()
(in
EdgeList
)
LAST_STAGE
(in
StageID
)
long_range_type()
(in
Rama2BOffsetEnergy
)
last_accept()
(in
MonteCarlo
)
last_start_atom_name()
(in
BackrubMover
)
long_range_type()
(in
DFIRE_Energy
)
last_accepted()
(in
MetropolisHastingsMover
)
last_tested_scores()
(in
GenericMonteCarloMover
)
long_range_type()
(in
RNA_SuiteEnergy
)
last_accepted_pose()
(in
DualMonteCarlo
)
LAST_TYPE
(in
rosetta.core.pose.full_model_info
)
long_range_type()
(in
symEnergy
)
last_accepted_pose()
(in
MonteCarlo
)
LAST_TYPE
(in
FullModelParameterType
)
long_string_rep()
(in
Contact
)
last_accepted_pose()
(in
GenericMonteCarloMover
)
LAST_TYPE
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
longer()
(in
xyzTriple_Real
)
last_accepted_pose()
(in
RationalMonteCarlo
)
last_uniform()
(in
SidechainMover
)
longer()
(in
xyzTriple_SSize
)
last_accepted_score()
(in
DualMonteCarlo
)
last_withinrot()
(in
SidechainMover
)
longer()
(in
xyzTriple_Size
)
last_accepted_score()
(in
MonteCarlo
)
launch_atom()
(in
ClassicMatchAlgorithm
)
longer()
(in
xyzTriple_double
)
last_accepted_score()
(in
GenericMonteCarloMover
)
layer()
(in
SelectResiduesByLayer
)
longer()
(in
xyzTriple_float
)
last_accepted_scores()
(in
GenericMonteCarloMover
)
LayerDesignOperation
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
longer()
(in
xyzVector_Real
)
LAST_ADD_OR_DELETE_CHOICE
(in
rosetta.protocols.stepwise.monte_carlo.mover
)
LayerDesignOperationAP
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
longer()
(in
xyzVector_SSize
)
LAST_ADD_OR_DELETE_CHOICE
(in
rosetta.protocols.stepwise.monte_carlo.mover._protocols_stepwise_monte_carlo_mover_
)
LayerDesignOperationCAP
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
longer()
(in
xyzVector_Size
)
LAST_ADD_OR_DELETE_CHOICE
(in
MoveType
)
LayerDesignOperationCreator
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
longer()
(in
xyzVector_double
)
last_angle()
(in
BackrubMover
)
LayerDesignOperationCreatorAP
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
longer()
(in
xyzVector_float
)
last_apply_failed()
(in
MakeBundle
)
LayerDesignOperationCreatorCAP
(in
rosetta.protocols.flxbb._protocols_flxbb_
)
longer_or_equal()
(in
xyzTriple_Real
)
last_apply_failed()
(in
MakeBundleHelix
)
LayerOperationType
(in
LayerDesignOperation
)
longer_or_equal()
(in
xyzTriple_SSize
)
last_apply_failed()
(in
PerturbBundleHelix
)
LayerSpecificationType
(in
LayerDesignOperation
)
longer_or_equal()
(in
xyzTriple_Size
)
last_assignment()
(in
PackDaemon
)
lazy_ig()
(in
PackerTask
)
longer_or_equal()
(in
xyzTriple_double
)
last_atomdesc
(in
atomitem
)
lazy_ig()
(in
PackerTask_
)
longer_or_equal()
(in
xyzTriple_float
)
last_atomdesc
(in
rosetta.core.scoring.rna.chemical_shift._core_scoring_rna_chemical_shift_
)
LazyEdge
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
longer_or_equal()
(in
xyzVector_Real
)
last_atomdesc
(in
rosetta.core.scoring.rna.chemical_shift
)
LazyEdgeAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
longer_or_equal()
(in
xyzVector_SSize
)
LAST_ATTACHMENT_TYPE
(in
rosetta.protocols.stepwise.monte_carlo.mover
)
LazyEdgeCAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
longer_or_equal()
(in
xyzVector_Size
)
LAST_ATTACHMENT_TYPE
(in
AttachmentType
)
LazyInteractionGraph
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
longer_or_equal()
(in
xyzVector_double
)
LAST_ATTACHMENT_TYPE
(in
rosetta.protocols.stepwise.monte_carlo.mover._protocols_stepwise_monte_carlo_mover_
)
LazyInteractionGraphAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
longer_or_equal()
(in
xyzVector_float
)
last_attempted_mover_idx()
(in
ParsedProtocol
)
LazyInteractionGraphCAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
LongRangeEnergyType
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
last_backbone_atom()
(in
ResidueType
)
LazyNode
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
LongRangeTwoBodyEnergy
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
last_backbone_atom()
(in
Residue
)
LazyNodeAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
LongRangeTwoBodyEnergyAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
last_batch_id()
(in
BaseArchiveManager
)
LazyNodeCAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
LongRangeTwoBodyEnergyCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
last_beta3_aa
(in
AA
)
LazyResourceManager
(in
rosetta.basic.resource_manager._basic_resource_manager_
)
look_for_jumps()
(in
rosetta.protocols.stepwise.modeler.rna.sugar._protocols_stepwise_modeler_rna_sugar_
)
last_beta3_aa
(in
rosetta.core.chemical._core_chemical_
)
LazyResourceManagerAP
(in
rosetta.basic.resource_manager._basic_resource_manager_
)
look_for_jumps_to_next()
(in
rosetta.protocols.stepwise.modeler.rna.sugar._protocols_stepwise_modeler_rna_sugar_
)
last_beta3_aa
(in
rosetta.core.chemical
)
LazyResourceManagerCAP
(in
rosetta.basic.resource_manager._basic_resource_manager_
)
look_for_jumps_to_previous()
(in
rosetta.protocols.stepwise.modeler.rna.sugar._protocols_stepwise_modeler_rna_sugar_
)
last_beta3_aa
(in
rosetta
)
LazySilentFileJobInputter
(in
rosetta.protocols.jd2._protocols_jd2_
)
look_for_non_jump_reference_to_next()
(in
rosetta.protocols.stepwise.modeler.rna.sugar._protocols_stepwise_modeler_rna_sugar_
)
LAST_CENTROID_START
(in
IterationStage
)
LazySilentFileJobInputterAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
look_for_non_jump_reference_to_previous()
(in
rosetta.protocols.stepwise.modeler.rna.sugar._protocols_stepwise_modeler_rna_sugar_
)
LAST_CENTROID_START
(in
IterativeBase
)
LazySilentFileJobInputterCAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
look_for_unique_jump_to_moving_res()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
last_controlling_chi()
(in
ResidueType
)
LazySilentFileJobInputterCreator
(in
rosetta.protocols.jd2._protocols_jd2_
)
lookbackMaxRmsd()
(in
VallLookbackFragMover
)
last_D_aa
(in
AA
)
LazySilentFileJobInputterCreatorAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
looks_like_reference_pose()
(in
rosetta.protocols.stepwise.setup._protocols_stepwise_setup_
)
last_D_aa
(in
rosetta.core.chemical._core_chemical_
)
LazySilentFileJobInputterCreatorCAP
(in
rosetta.protocols.jd2._protocols_jd2_
)
lookup()
(in
MMBondAngleLibrary
)
last_D_aa
(in
rosetta.core.chemical
)
LazySilentFilePoseInputStream
(in
rosetta.core.import_pose.pose_stream._core_import_pose_pose_stream_
)
lookup()
(in
MMBondAngleResidueTypeParamSet
)
last_D_aa
(in
rosetta
)
LazySilentFilePoseInputStreamAP
(in
rosetta.core.import_pose.pose_stream._core_import_pose_pose_stream_
)
lookup()
(in
MMBondLengthLibrary
)
last_DNA_aa
(in
AA
)
LazySilentFilePoseInputStreamCAP
(in
rosetta.core.import_pose.pose_stream._core_import_pose_pose_stream_
)
lookup()
(in
MMLJLibrary
)
last_DNA_aa
(in
rosetta.core.chemical._core_chemical_
)
lb()
(in
BoundFunc
)
lookup()
(in
MMTorsionLibrary
)
last_DNA_aa
(in
rosetta.core.chemical
)
lbfgs_iteration_data
(in
rosetta.core.optimization._core_optimization_
)
lookup()
(in
SixDOffsetTree
)
last_DNA_aa
(in
rosetta
)
lbfgs_iteration_dataAP
(in
rosetta.core.optimization._core_optimization_
)
lookup()
(in
LoopHashMap
)
last_end_atom_name()
(in
BackrubMover
)
lbfgs_iteration_dataCAP
(in
rosetta.core.optimization._core_optimization_
)
lookup_angle()
(in
IdealParametersDatabase
)
last_independent_residue()
(in
SymmetryInfo
)
LeapIndex
(in
rosetta.protocols.loophash._protocols_loophash_
)
lookup_angle_legacy()
(in
IdealParametersDatabase
)
last_inner_score_delta_over_temperature()
(in
BackrubMover
)
LeapIndexAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
lookup_idx()
(in
rosetta.core.scoring.rna.data._core_scoring_rna_data_
)
last_inner_score_delta_over_temperature()
(in
BackrubSidechainMover
)
LeapIndexCAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
lookup_length()
(in
IdealParametersDatabase
)
last_inner_score_delta_over_temperature()
(in
ThermodynamicMover
)
LeastNativeLike9merFilter
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
lookup_length_legacy()
(in
IdealParametersDatabase
)
last_inner_score_delta_over_temperature()
(in
BalancedKicMover
)
LeastNativeLike9merFilterAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
lookup_result()
(in
FragmentLookupFilter
)
last_inner_score_delta_over_temperature()
(in
RigidBodyDeterministicSpinMover
)
LeastNativeLike9merFilterCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
lookup_stored_constraints()
(in
RemodelConstraintGenerator
)
last_inner_score_delta_over_temperature()
(in
RigidBodyDofPerturbMover
)
LeastNativeLike9merFilterCreator
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
lookup_three_bond()
(in
MMLJLibrary
)
last_inner_score_delta_over_temperature()
(in
RigidBodyDofRandomTransMover
)
LeastNativeLike9merFilterCreatorAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
lookup_torsion()
(in
IdealParametersDatabase
)
last_inner_score_delta_over_temperature()
(in
RigidBodyDofRandomizeMover
)
LeastNativeLike9merFilterCreatorCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
lookup_torsion_legacy()
(in
IdealParametersDatabase
)
last_inner_score_delta_over_temperature()
(in
RigidBodyDofSeqPerturbMover
)
leave_as_is()
(in
DatabaseThread
)
lookup_withkey()
(in
LoopHashMap
)
last_inner_score_delta_over_temperature()
(in
RigidBodyDofSeqRandomizeMover
)
LeeRichards
(in
rosetta.core.scoring.packstat._core_scoring_packstat_
)
LookupMode
(in
rosetta.protocols.indexed_structure_store.filters._protocols_indexed_structure_store_filters_
)
last_inner_score_delta_over_temperature()
(in
RigidBodyDofSeqTransMover
)
LeeRichardsAP
(in
rosetta.core.scoring.packstat._core_scoring_packstat_
)
Loop
(in
rosetta.core.scoring.loop_graph._core_scoring_loop_graph_
)
last_inner_score_delta_over_temperature()
(in
RigidBodyDofTransMover
)
LeeRichardsCAP
(in
rosetta.core.scoring.packstat._core_scoring_packstat_
)
Loop
(in
rosetta.protocols.fldsgn.topology._protocols_fldsgn_topology_
)
last_inner_score_delta_over_temperature()
(in
RigidBodyMover
)
left
(in
AlignMove
)
Loop
(in
rosetta.protocols.loops._protocols_loops_
)
last_inner_score_delta_over_temperature()
(in
RigidBodyPerturbMover
)
left
(in
rosetta.core.sequence._core_sequence_
)
loop()
(in
LoopCycle
)
last_inner_score_delta_over_temperature()
(in
RigidBodyPerturbNoCenterMover
)
left
(in
rosetta.core.sequence
)
loop()
(in
AnchorMoversData
)
last_inner_score_delta_over_temperature()
(in
RigidBodyPerturbRandomJumpMover
)
left()
(in
ClusteringTreeNode
)
loop()
(in
SS_Info2
)
last_inner_score_delta_over_temperature()
(in
RigidBodyRandomizeMover
)
left_cdf()
(in
Ramachandran2B
)
loop()
(in
CCDLoopClosureMover
)
last_inner_score_delta_over_temperature()
(in
RigidBodySpinMover
)
left_cdf_for_torsion_bin()
(in
Ramachandran2B
)
loop_ang()
(in
ResidueVicinityInfo
)
last_inner_score_delta_over_temperature()
(in
RigidBodyTransMover
)
left_child()
(in
KDNode
)
loop_ang()
(in
ResInteractions
)
last_inner_score_delta_over_temperature()
(in
UniformRigidBodyMover
)
left_handed()
(in
HSSTriplet
)
loop_begin()
(in
KinematicMover
)
last_inner_score_delta_over_temperature()
(in
UniformSphereTransMover
)
left_multiply_by()
(in
Quaternion_Real
)
loop_build
(in
rosetta.protocols
)
last_inner_score_delta_over_temperature()
(in
BBConRotMover
)
left_multiply_by()
(in
Quaternion_double
)
loop_bump_check
(in
filter_type
)
last_inner_score_delta_over_temperature()
(in
BBG8T3AMover
)
left_multiply_by()
(in
Quaternion_float
)
loop_bump_check
(in
rosetta.protocols.generalized_kinematic_closure.filter._protocols_generalized_kinematic_closure_filter_
)
last_inner_score_delta_over_temperature()
(in
BBGaussianMover
)
left_multiply_by_inverse_of()
(in
Quaternion_Real
)
loop_bump_check
(in
rosetta.protocols.generalized_kinematic_closure.filter
)
last_inner_score_delta_over_temperature()
(in
BackboneMover
)
left_multiply_by_inverse_of()
(in
Quaternion_double
)
loop_centroid_relax()
(in
CDRH3Modeler
)
last_inner_score_delta_over_temperature()
(in
ShearMover
)
left_multiply_by_inverse_of()
(in
Quaternion_float
)
loop_close
(in
ScoreType
)
last_inner_score_delta_over_temperature()
(in
SmallMover
)
LEFT_PAREN
(in
rosetta.numeric.expression_parser
)
loop_close
(in
rosetta.core.scoring._core_scoring_
)
last_inner_score_delta_over_temperature()
(in
JumpRotamerSidechainMover
)
LEFT_PAREN
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
loop_close
(in
rosetta.core.scoring
)
last_inner_score_delta_over_temperature()
(in
PerturbChiSidechainMover
)
LEFT_PAREN
(in
TokenType
)
loop_close
(in
rosetta
)
last_inner_score_delta_over_temperature()
(in
PerturbRotamerSidechainMover
)
left_stub_atoms()
(in
ConnectRight
)
loop_close
(in
rosetta.protocols.stepwise.modeler.protein
)
last_inner_score_delta_over_temperature()
(in
SidechainMCMover
)
legacy
(in
SasaRadii
)
LOOP_CLOSURE
(in
rosetta
)
last_inner_score_delta_over_temperature()
(in
SidechainMover
)
legacy
(in
rosetta.core.scoring.sasa._core_scoring_sasa_
)
LOOP_CLOSURE
(in
rosetta.protocols.abinitio
)
last_inner_score_delta_over_temperature()
(in
SidechainMoverBase
)
legacy
(in
rosetta.core.scoring.sasa
)
LOOP_CLOSURE
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
last_inserted_frag_begin()
(in
TorsionFragmentMover
)
legacy
(in
rosetta.protocols.stepwise
)
LOOP_CLOSURE
(in
StageID
)
last_move()
(in
MetropolisHastingsMover
)
LegacyKicSampler
(in
rosetta.protocols.loop_modeling.samplers._protocols_loop_modeling_samplers_
)
loop_closure
(in
rosetta.protocols.loops
)
last_move_succeeded()
(in
KinematicMover
)
LegacyKicSamplerAP
(in
rosetta.protocols.loop_modeling.samplers._protocols_loop_modeling_samplers_
)
loop_cut()
(in
LoopLengthChange
)
last_mutation()
(in
SidechainMover
)
LegacyKicSamplerCAP
(in
rosetta.protocols.loop_modeling.samplers._protocols_loop_modeling_samplers_
)
loop_dih()
(in
ResidueVicinityInfo
)
last_nchi()
(in
SidechainMover
)
LegacyKicSamplerCreator
(in
rosetta.protocols.loop_modeling.samplers._protocols_loop_modeling_samplers_
)
loop_dih()
(in
ResInteractions
)
last_nonempty_bin()
(in
DistanceHistogram
)
LegacyKicSamplerCreatorAP
(in
rosetta.protocols.loop_modeling.samplers._protocols_loop_modeling_samplers_
)
loop_end()
(in
KinematicMover
)
last_proposal_density_ratio()
(in
RotamerDumpMover
)
LegacyKicSamplerCreatorCAP
(in
rosetta.protocols.loop_modeling.samplers._protocols_loop_modeling_samplers_
)
loop_end()
(in
LoopLengthChange
)
last_proposal_density_ratio()
(in
AbrelaxMover
)
LegacyLeapIndex
(in
rosetta.protocols.loophash._protocols_loophash_
)
loop_fa_relax()
(in
CDRH3Modeler
)
last_proposal_density_ratio()
(in
ClassicAbinitio
)
LegacyLeapIndexAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
loop_file_name()
(in
Loops
)
last_proposal_density_ratio()
(in
ConstraintFragmentSampler
)
LegacyLeapIndexCAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
loop_fraction()
(in
SecondaryStructure
)
last_proposal_density_ratio()
(in
DomainAssembly
)
LegacyRootClaim
(in
rosetta.protocols.topology_broker.claims._protocols_topology_broker_claims_
)
loop_frags()
(in
FoldandDockClaimer
)
last_proposal_density_ratio()
(in
DoubleLayerKinematicAbinitio
)
LegacyRootClaimAP
(in
rosetta.protocols.topology_broker.claims._protocols_topology_broker_claims_
)
loop_frags()
(in
MembraneTopologyClaimer
)
last_proposal_density_ratio()
(in
FoldConstraints
)
LegacyRootClaimCAP
(in
rosetta.protocols.topology_broker.claims._protocols_topology_broker_claims_
)
loop_frags()
(in
TopologyClaimer
)
last_proposal_density_ratio()
(in
FragmentSampler
)
Legendre()
(in
SO3coeffs
)
loop_graph
(in
rosetta.core.scoring
)
last_proposal_density_ratio()
(in
JumpingFoldConstraintsWrapper
)
LeGrand
(in
rosetta.core.scoring.sasa
)
loop_id()
(in
SS_Info2
)
last_proposal_density_ratio()
(in
KinematicAbinitio
)
LeGrand
(in
rosetta.core.scoring.sasa._core_scoring_sasa_
)
loop_incident()
(in
Node
)
last_proposal_density_ratio()
(in
KinematicTaskControl
)
LeGrand
(in
SasaMethodEnum
)
loop_index_of_residue()
(in
Loops
)
last_proposal_density_ratio()
(in
LoopJumpFoldCst
)
LeGrandSasa
(in
rosetta.core.scoring.sasa._core_scoring_sasa_
)
loop_info()
(in
EnzdesLoopsFile
)
last_proposal_density_ratio()
(in
MembraneAbinitio
)
LeGrandSasaAP
(in
rosetta.core.scoring.sasa._core_scoring_sasa_
)
loop_length()
(in
PlaceOnLoop
)
last_proposal_density_ratio()
(in
Protocol
)
LeGrandSasaCAP
(in
rosetta.core.scoring.sasa._core_scoring_sasa_
)
loop_local_rmsd()
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
ResolutionSwitcher
)
length
(in
xyzTriple_Real
)
Loop_lt
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
AbscriptLoopCloserCM
)
length
(in
xyzTriple_SSize
)
Loop_ltAP
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
AbscriptMover
)
length
(in
xyzTriple_Size
)
Loop_ltCAP
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
AbscriptStageMover
)
length
(in
xyzTriple_double
)
loop_modeling
(in
rosetta.protocols
)
last_proposal_density_ratio()
(in
ConstraintPreparer
)
length
(in
xyzTriple_float
)
loop_mover
(in
rosetta.protocols.loops
)
last_proposal_density_ratio()
(in
FragmentCM
)
length
(in
xyzVector_Real
)
loop_mover()
(in
LoopRefineInnerCycle
)
last_proposal_density_ratio()
(in
FragmentJumpCM
)
length
(in
xyzVector_SSize
)
loop_mover_fold_tree_constant()
(in
VarLengthBuild
)
last_proposal_density_ratio()
(in
RigidChunkCM
)
length
(in
xyzVector_Size
)
loop_mover_from_tag()
(in
rosetta.protocols.loop_modeling.utilities._protocols_loop_modeling_utilities_
)
last_proposal_density_ratio()
(in
StagePreparer
)
length
(in
xyzVector_double
)
loop_mover_str()
(in
BluePrintBDR
)
last_proposal_density_ratio()
(in
StructPerturberCM
)
length
(in
xyzVector_float
)
loop_mover_str()
(in
VarLengthBuild
)
last_proposal_density_ratio()
(in
InterfaceAnalyzerMover
)
length()
(in
SequenceAnnotation
)
loop_of_residue()
(in
Loops
)
last_proposal_density_ratio()
(in
LoopAnalyzerMover
)
length()
(in
Frame
)
loop_rmsd()
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
PackStatMover
)
length()
(in
LoopScoreInfo
)
loop_rmsd_with_superimpose()
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
AnchoredDesignMover
)
length()
(in
AnnotatedSequence
)
loop_rmsd_with_superimpose_core()
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
AnchoredPerturbMover
)
length()
(in
ChemicalShiftSequence
)
loop_score_info()
(in
LoopGraph
)
last_proposal_density_ratio()
(in
AnchoredRefineMover
)
length()
(in
CompositeSequence
)
loop_size()
(in
Loops
)
last_proposal_density_ratio()
(in
AntibodyModelerProtocol
)
length()
(in
Sequence
)
loop_sizes()
(in
LoopHashDiversifier
)
last_proposal_density_ratio()
(in
CDRsMinPackMin
)
length()
(in
SequenceAlignment
)
loop_sizes()
(in
LoopHashLibraryOptions
)
last_proposal_density_ratio()
(in
CloseOneCDRLoop
)
length()
(in
SequenceCoupling
)
loop_sizes()
(in
LoopHashMoverWrapper
)
last_proposal_density_ratio()
(in
GraftCDRLoopsProtocol
)
length()
(in
SequenceProfile
)
loop_start()
(in
LoopLengthChange
)
last_proposal_density_ratio()
(in
GraftOneCDRLoop
)
length()
(in
IntervalSet_T_double_T
)
loop_str()
(in
FoldTreeFromLoops
)
last_proposal_density_ratio()
(in
GraftedStemOptimizer
)
length()
(in
SS_Base
)
loop_suites()
(in
LoopGraph
)
last_proposal_density_ratio()
(in
H3CterInsert
)
length()
(in
Interval
)
LoopAnalyzerMover
(in
rosetta.protocols.analysis._protocols_analysis_
)
last_proposal_density_ratio()
(in
H3PerturbCCD
)
length()
(in
SingleFileBuffer
)
LoopAnalyzerMoverAP
(in
rosetta.protocols.analysis._protocols_analysis_
)
last_proposal_density_ratio()
(in
H3RefineCCD
)
length()
(in
BackboneSegment
)
LoopAnalyzerMoverCAP
(in
rosetta.protocols.analysis._protocols_analysis_
)
last_proposal_density_ratio()
(in
LHRepulsiveRamp
)
length()
(in
Loop
)
LoopAnchorFeatures
(in
rosetta.protocols.features._protocols_features_
)
last_proposal_density_ratio()
(in
ModelCDRH3
)
length()
(in
RBResidueRange
)
LoopAnchorFeaturesAP
(in
rosetta.protocols.features._protocols_features_
)
last_proposal_density_ratio()
(in
RefineBetaBarrel
)
length()
(in
SequenceClaim
)
LoopAnchorFeaturesCAP
(in
rosetta.protocols.features._protocols_features_
)
last_proposal_density_ratio()
(in
RefineOneCDRLoop
)
length_dependent_srbb()
(in
HBondOptions
)
LoopAnchorFeaturesCreator
(in
rosetta.protocols.features._protocols_features_
)
last_proposal_density_ratio()
(in
RefineOneCDRLoopCentroid
)
length_dependent_srbb_highscale()
(in
HBondOptions
)
LoopAnchorFeaturesCreatorAP
(in
rosetta.protocols.features._protocols_features_
)
last_proposal_density_ratio()
(in
CDRDihedralConstraintMover
)
length_dependent_srbb_lowscale()
(in
HBondOptions
)
LoopAnchorFeaturesCreatorCAP
(in
rosetta.protocols.features._protocols_features_
)
last_proposal_density_ratio()
(in
ParatopeEpitopeSiteConstraintMover
)
length_dependent_srbb_maxlength()
(in
HBondOptions
)
LoopAP
(in
rosetta.core.scoring.loop_graph._core_scoring_loop_graph_
)
last_proposal_density_ratio()
(in
ParatopeSiteConstraintMover
)
length_dependent_srbb_minlength()
(in
HBondOptions
)
LoopAP
(in
rosetta.protocols.fldsgn.topology._protocols_fldsgn_topology_
)
last_proposal_density_ratio()
(in
AntibodyDesignMover
)
LENGTH_EVENT_COLLECTOR
(in
Enum
)
LoopAP
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
AntibodyDesignProtocol
)
LENGTH_EVENT_COLLECTOR
(in
CacheableObserverType
)
LoopBuild_main()
(in
rosetta.protocols.loop_build._protocols_loop_build_
)
last_proposal_density_ratio()
(in
MutateFrameworkForCluster
)
length_normalized_distance()
(in
CDRCluster
)
LoopBuilder
(in
rosetta.protocols.loop_modeling._protocols_loop_modeling_
)
last_proposal_density_ratio()
(in
AntibodyModeler
)
length_parameters()
(in
ResidueCartBondedParameters
)
LoopBuilderAP
(in
rosetta.protocols.loop_modeling._protocols_loop_modeling_
)
last_proposal_density_ratio()
(in
CDRH3Modeler
)
length_squared
(in
xyzTriple_Real
)
LoopBuilderCAP
(in
rosetta.protocols.loop_modeling._protocols_loop_modeling_
)
last_proposal_density_ratio()
(in
CloseOneMover
)
length_squared
(in
xyzTriple_SSize
)
LoopBuilderCreator
(in
rosetta.protocols.loop_modeling._protocols_loop_modeling_
)
last_proposal_density_ratio()
(in
GraftMover
)
length_squared
(in
xyzTriple_Size
)
LoopBuilderCreatorAP
(in
rosetta.protocols.loop_modeling._protocols_loop_modeling_
)
last_proposal_density_ratio()
(in
GraftOneMover
)
length_squared
(in
xyzTriple_double
)
LoopBuilderCreatorCAP
(in
rosetta.protocols.loop_modeling._protocols_loop_modeling_
)
last_proposal_density_ratio()
(in
LoopRlxMover
)
length_squared
(in
xyzTriple_float
)
LoopBuildMover
(in
rosetta.protocols.loop_build._protocols_loop_build_
)
last_proposal_density_ratio()
(in
BackrubMover
)
length_squared
(in
xyzVector_Real
)
LoopBuildMoverAP
(in
rosetta.protocols.loop_build._protocols_loop_build_
)
last_proposal_density_ratio()
(in
BackrubProtocol
)
length_squared
(in
xyzVector_SSize
)
LoopBuildMoverCAP
(in
rosetta.protocols.loop_build._protocols_loop_build_
)
last_proposal_density_ratio()
(in
BackrubSidechainMover
)
length_squared
(in
xyzVector_Size
)
LoopCAP
(in
rosetta.core.scoring.loop_graph._core_scoring_loop_graph_
)
last_proposal_density_ratio()
(in
CanonicalSamplingMover
)
length_squared
(in
xyzVector_double
)
LoopCAP
(in
rosetta.protocols.fldsgn.topology._protocols_fldsgn_topology_
)
last_proposal_density_ratio()
(in
FixedTemperatureController
)
length_squared
(in
xyzVector_float
)
LoopCAP
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
MetricRecorder
)
length_tolerance()
(in
NumericTraits_T_double_T
)
LoopCloseEnergy
(in
rosetta.core.scoring.loop_graph._core_scoring_loop_graph_
)
last_proposal_density_ratio()
(in
MetropolisHastingsMover
)
length_tolerance()
(in
NumericTraits_T_float_T
)
LoopCloseEnergyAP
(in
rosetta.core.scoring.loop_graph._core_scoring_loop_graph_
)
last_proposal_density_ratio()
(in
ParallelTempering
)
length_tolerance()
(in
NumericTraits_T_long_double_T
)
LoopCloseEnergyCAP
(in
rosetta.core.scoring.loop_graph._core_scoring_loop_graph_
)
last_proposal_density_ratio()
(in
ProgressBarObserver
)
LengthEvent
(in
rosetta.core.conformation.signals._core_conformation_signals_
)
LoopCloseEnergyCreator
(in
rosetta.core.scoring.loop_graph._core_scoring_loop_graph_
)
last_proposal_density_ratio()
(in
SidechainMetropolisHastingsMover
)
LengthEventAP
(in
rosetta.core.conformation.signals._core_conformation_signals_
)
LoopCloseEnergyCreatorAP
(in
rosetta.core.scoring.loop_graph._core_scoring_loop_graph_
)
last_proposal_density_ratio()
(in
SimulatedTempering
)
LengthEventCAP
(in
rosetta.core.conformation.signals._core_conformation_signals_
)
LoopCloseEnergyCreatorCAP
(in
rosetta.core.scoring.loop_graph._core_scoring_loop_graph_
)
last_proposal_density_ratio()
(in
TemperatureController
)
LengthEventCollector
(in
rosetta.core.pose.datacache._core_pose_datacache_
)
LoopClosure
(in
rosetta.protocols.loops.loop_closure.ccd._protocols_loops_loop_closure_ccd_
)
last_proposal_density_ratio()
(in
TemperingBase
)
LengthEventCollectorAP
(in
rosetta.core.pose.datacache._core_pose_datacache_
)
LoopClosureAP
(in
rosetta.protocols.loops.loop_closure.ccd._protocols_loops_loop_closure_ccd_
)
last_proposal_density_ratio()
(in
ThermodynamicMover
)
LengthEventCollectorCAP
(in
rosetta.core.pose.datacache._core_pose_datacache_
)
LoopClosureCAP
(in
rosetta.protocols.loops.loop_closure.ccd._protocols_loops_loop_closure_ccd_
)
last_proposal_density_ratio()
(in
ThermodynamicObserver
)
LengthGen
(in
rosetta.core.fragment.picking_old.vall.gen._core_fragment_picking_old_vall_gen_
)
LoopCM
(in
rosetta.protocols.loops.loop_mover._protocols_loops_loop_mover_
)
last_proposal_density_ratio()
(in
TrialCounterObserver
)
LengthGenAP
(in
rosetta.core.fragment.picking_old.vall.gen._core_fragment_picking_old_vall_gen_
)
LoopCMAP
(in
rosetta.protocols.loops.loop_mover._protocols_loops_loop_mover_
)
last_proposal_density_ratio()
(in
AssignToClustersMover
)
LengthGenCAP
(in
rosetta.core.fragment.picking_old.vall.gen._core_fragment_picking_old_vall_gen_
)
LoopCMCAP
(in
rosetta.protocols.loops.loop_mover._protocols_loops_loop_mover_
)
last_proposal_density_ratio()
(in
ClusterBase
)
let_rigid_body_jumps_move()
(in
rosetta.protocols.farna._protocols_farna_
)
LoopCMCreator
(in
rosetta.protocols.loops.loop_mover._protocols_loops_loop_mover_
)
last_proposal_density_ratio()
(in
ClusterPhilStyle
)
level()
(in
HierarchicalLevel
)
LoopCMCreatorAP
(in
rosetta.protocols.loops.loop_mover._protocols_loops_loop_mover_
)
last_proposal_density_ratio()
(in
ClusterPhilStyle_Loop
)
level_2_grid_coord()
(in
FixedTemperatureController
)
LoopCMCreatorCAP
(in
rosetta.protocols.loops.loop_mover._protocols_loops_loop_mover_
)
last_proposal_density_ratio()
(in
ClusterPhilStyle_PoseReporter
)
level_2_grid_coord()
(in
HamiltonianExchange
)
LoopConfiguration
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
EnsembleConstraints
)
level_2_grid_coord()
(in
ParallelTempering
)
LoopCycle
(in
rosetta.core.scoring.loop_graph._core_scoring_loop_graph_
)
last_proposal_density_ratio()
(in
EnsembleConstraints_Simple
)
level_2_grid_coord()
(in
SimulatedTempering
)
LoopCycleAP
(in
rosetta.core.scoring.loop_graph._core_scoring_loop_graph_
)
last_proposal_density_ratio()
(in
GatherPosesMover
)
level_2_grid_coord()
(in
TemperatureController
)
LoopCycleCAP
(in
rosetta.core.scoring.loop_graph._core_scoring_loop_graph_
)
last_proposal_density_ratio()
(in
CoarseRNA_LoopCloser
)
level_2_grid_coord()
(in
TemperingBase
)
loopdb_range()
(in
LoopHashLibrary
)
last_proposal_density_ratio()
(in
ExtraThreadingMover
)
level_find()
(in
HierarchicalLevel
)
LoopFilter
(in
rosetta.protocols.loop_modeling.utilities._protocols_loop_modeling_utilities_
)
last_proposal_density_ratio()
(in
LoopRelaxMover
)
level_radius()
(in
HierarchicalLevel
)
LoopFilterAP
(in
rosetta.protocols.loop_modeling.utilities._protocols_loop_modeling_utilities_
)
last_proposal_density_ratio()
(in
LoopRelaxThreadingMover
)
level_size()
(in
HierarchicalLevel
)
LoopFilterCAP
(in
rosetta.protocols.loop_modeling.utilities._protocols_loop_modeling_utilities_
)
last_proposal_density_ratio()
(in
MultiThreadingMover
)
LexicographicalIterator
(in
rosetta.utility._utility_
)
LoopFinder
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
PartialThreadingMover
)
LexicographicalIteratorAP
(in
rosetta.utility._utility_
)
loopfinder()
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
RecoverSideChainsMover
)
LexicographicalIteratorCAP
(in
rosetta.utility._utility_
)
LoopFinderAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
StealLigandMover
)
LHRepulsiveRamp
(in
rosetta.protocols.antibody._protocols_antibody_
)
LoopFinderCAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
StealSideChainsMover
)
LHRepulsiveRampAP
(in
rosetta.protocols.antibody._protocols_antibody_
)
LoopFinderCreator
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
ThreadingMover
)
LHRepulsiveRampCAP
(in
rosetta.protocols.antibody._protocols_antibody_
)
LoopFinderCreatorAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
ContactMap
)
lib()
(in
Sparta
)
LoopFinderCreatorCAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
FitBfactorsMover
)
LIB_FULL_PATH
(in
rosetta.basic
)
LoopFromFileData
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
LoadDensityMapMover
)
LIB_FULL_PATH
(in
rosetta.basic._basic_
)
LoopFromFileDataAP
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
RecomputeDensityMapMover
)
LIB_FULL_PATH
(in
ProfTag
)
LoopFromFileDataCAP
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
SetCrystWeightMover
)
lib_full_path()
(in
HierarchicalLevel
)
LoopGraph
(in
rosetta.core.scoring.loop_graph._core_scoring_loop_graph_
)
last_proposal_density_ratio()
(in
SetRefinementOptionsMover
)
lib_full_path()
(in
rosetta.protocols.canonical_sampling.mc_convergence_checks._protocols_canonical_sampling_mc_convergence_checks_
)
LoopGraphAP
(in
rosetta.core.scoring.loop_graph._core_scoring_loop_graph_
)
last_proposal_density_ratio()
(in
TagPoseWithRefinementStatsMover
)
Librarian_T_core_fragment_picking_old_vall_scores_VallFragmentScore_core_fragment_picking_old_vall_eval_VallFragmentEval_core_fragment_picking_old_vall_gen_VallFragmentGen_core_fragment_picking_old_vall_VallLibrary_T
(in
rosetta.core.fragment.picking_old.concepts._core_fragment_picking_old_concepts_
)
LoopGraphCAP
(in
rosetta.core.scoring.loop_graph._core_scoring_loop_graph_
)
last_proposal_density_ratio()
(in
UpdateSolventMover
)
Librarian_T_core_fragment_picking_old_vall_scores_VallFragmentScore_core_fragment_picking_old_vall_eval_VallFragmentEval_core_fragment_picking_old_vall_gen_VallFragmentGen_core_fragment_picking_old_vall_VallLibrary_TAP
(in
rosetta.core.fragment.picking_old.concepts._core_fragment_picking_old_concepts_
)
loophash
(in
rosetta.protocols
)
last_proposal_density_ratio()
(in
CreateAngleConstraint
)
Librarian_T_core_fragment_picking_old_vall_scores_VallFragmentScore_core_fragment_picking_old_vall_eval_VallFragmentEval_core_fragment_picking_old_vall_gen_VallFragmentGen_core_fragment_picking_old_vall_VallLibrary_TCAP
(in
rosetta.core.fragment.picking_old.concepts._core_fragment_picking_old_concepts_
)
loophash_main()
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
CreateDistanceConstraint
)
Librarian_VallFragmentScore_VallFragmentEval_VallFragmentGen_VallLibrary
(in
rosetta.core.fragment.picking_old.concepts._core_fragment_picking_old_concepts_
)
LoopHashDiversifier
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
CreateTorsionConstraint
)
Librarian_VallFragmentScore_VallFragmentEval_VallFragmentGen_VallLibraryAP
(in
rosetta.core.fragment.picking_old.concepts._core_fragment_picking_old_concepts_
)
LoopHashDiversifierAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
DeclareBond
)
Librarian_VallFragmentScore_VallFragmentEval_VallFragmentGen_VallLibraryCAP
(in
rosetta.core.fragment.picking_old.concepts._core_fragment_picking_old_concepts_
)
LoopHashDiversifierCAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
PeptideStubMover
)
library()
(in
FragLib
)
LoopHashDiversifierCreator
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
ddGMover
)
library()
(in
MotifLibrary
)
LoopHashDiversifierCreatorAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
GreedyOptMutationMover
)
library_size()
(in
DiscreteRandomizer
)
LoopHashDiversifierCreatorCAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
ParetoOptMutationMover
)
library_size()
(in
EntityRandomizer
)
LoopHashLibrary
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
DesignProteinBackboneAroundDNA
)
library_size()
(in
Mutate1Randomizer
)
LoopHashLibraryAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
DnaInterfaceMinMover
)
library_size()
(in
PositionSpecificRandomizer
)
LoopHashLibraryCAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
DnaInterfaceMultiStateDesign
)
Library_T_core_fragment_picking_old_vall_VallSections_T
(in
rosetta.core.fragment.picking_old.concepts._core_fragment_picking_old_concepts_
)
LoopHashLibraryLoader
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
DnaInterfacePacker
)
Library_T_core_fragment_picking_old_vall_VallSections_TAP
(in
rosetta.core.fragment.picking_old.concepts._core_fragment_picking_old_concepts_
)
LoopHashLibraryLoaderAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
SeparateDnaFromNonDna
)
Library_T_core_fragment_picking_old_vall_VallSections_TCAP
(in
rosetta.core.fragment.picking_old.concepts._core_fragment_picking_old_concepts_
)
LoopHashLibraryLoaderCAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
ConformerSwitchMover
)
Library_VallSections
(in
rosetta.core.fragment.picking_old.concepts._core_fragment_picking_old_concepts_
)
LoopHashLibraryLoaderCreator
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
DockMCMCycle
)
Library_VallSectionsAP
(in
rosetta.core.fragment.picking_old.concepts._core_fragment_picking_old_concepts_
)
LoopHashLibraryLoaderCreatorAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
DockMCMProtocol
)
Library_VallSectionsCAP
(in
rosetta.core.fragment.picking_old.concepts._core_fragment_picking_old_concepts_
)
LoopHashLibraryLoaderCreatorCAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
DockMinMover
)
libsvm
(in
rosetta.utility
)
LoopHashLibraryOptions
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
DockSetupMover
)
lig_rigid_body_confs()
(in
EnzdesCacheableObserver
)
LoopHashLibraryOptionsAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
DockingEnsemblePrepackProtocol
)
LIGAND
(in
rosetta
)
LoopHashLibraryOptionsCAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
DockingHighRes
)
LIGAND
(in
rosetta.core.chemical
)
LoopHashLibraryOptionsCreator
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
DockingHighResLegacy
)
LIGAND
(in
rosetta.core.chemical._core_chemical_
)
LoopHashLibraryOptionsCreatorAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
DockingInitialPerturbation
)
LIGAND
(in
ResidueProperty
)
LoopHashLibraryOptionsCreatorCAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
DockingLowRes
)
ligand_docking
(in
rosetta.protocols
)
LoopHashMap
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
DockingLowResEnsemble
)
Ligand_info
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
LoopHashMapAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
DockingPrepackProtocol
)
Ligand_infoAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
LoopHashMapCAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
DockingProtocol
)
Ligand_infoCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
LoopHashMoverWrapper
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
DockingSlideIntoContact
)
ligand_options
(in
rosetta.protocols.ligand_docking
)
LoopHashMoverWrapperAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
EllipsoidalRandomizationMover
)
LigandArea
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
LoopHashMoverWrapperCAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
FaDockingSlideIntoContact
)
LigandAreaAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
LoopHashMoverWrapperCreator
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
InterfaceSidechainMinMover
)
LigandAreaCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
LoopHashMoverWrapperCreatorAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
SidechainMinMover
)
LigandAreaLoader
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
LoopHashMoverWrapperCreatorCAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
TemperedDocking
)
LigandAreaLoaderAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
LoopHashRelaxProtocol
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
MPDockingMover
)
LigandAreaLoaderCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
LoopHashRelaxProtocolAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
MPDockingSetupMover
)
LigandAreaLoaderCreator
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
LoopHashRelaxProtocolCAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
SaneDockingProtocol
)
LigandAreaLoaderCreatorAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
LoopHashSampler
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
AddAssemblyConstraints
)
LigandAreaLoaderCreatorCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
LoopHashSamplerAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
AssembleLinkerMover
)
LigandBaseProtocol
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
LoopHashSamplerCAP
(in
rosetta.protocols.loophash._protocols_loophash_
)
last_proposal_density_ratio()
(in
CombineChainsMover
)
LigandBaseProtocolAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
LoopJumpFoldCst
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
last_proposal_density_ratio()
(in
PostDockAssemblyScorer
)
LigandBaseProtocolCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
LoopJumpFoldCstAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
last_proposal_density_ratio()
(in
BfactorFittingMover
)
LigandConformer
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
LoopJumpFoldCstCAP
(in
rosetta.protocols.abinitio._protocols_abinitio_
)
last_proposal_density_ratio()
(in
DensityMorphingMover
)
LigandConformerAP
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
LoopLengthChange
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
ReportFSC
)
LigandConformerBuilder
(in
rosetta.protocols.match.downstream._protocols_match_downstream_
)
LoopLengthChangeAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
ScaleMapIntensities
)
LigandConformerBuilderAP
(in
rosetta.protocols.match.downstream._protocols_match_downstream_
)
LoopLengthChangeCAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
SetupForDensityScoringMover
)
LigandConformerBuilderCAP
(in
rosetta.protocols.match.downstream._protocols_match_downstream_
)
LoopLengthChangeCreator
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
ClientMover
)
LigandConformerCAP
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
LoopLengthChangeCreatorAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
CoMTrackerCM
)
LigandDesign
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
LoopLengthChangeCreatorCAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
EnvMover
)
LigandDesignAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
LoopModeler
(in
rosetta.protocols.loop_modeling._protocols_loop_modeling_
)
last_proposal_density_ratio()
(in
ScriptCM
)
LigandDesignCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
LoopModelerAP
(in
rosetta.protocols.loop_modeling._protocols_loop_modeling_
)
last_proposal_density_ratio()
(in
MultipleDomainMover
)
LigandDesignCreator
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
LoopModelerCAP
(in
rosetta.protocols.loop_modeling._protocols_loop_modeling_
)
last_proposal_density_ratio()
(in
RNA_DeNovoProtocol
)
LigandDesignCreatorAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
LoopModelerCreator
(in
rosetta.protocols.loop_modeling._protocols_loop_modeling_
)
last_proposal_density_ratio()
(in
RNA_FragmentMover
)
LigandDesignCreatorCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
LoopModelerCreatorAP
(in
rosetta.protocols.loop_modeling._protocols_loop_modeling_
)
last_proposal_density_ratio()
(in
RNA_LoopCloser
)
LigandDockProtocol
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
LoopModelerCreatorCAP
(in
rosetta.protocols.loop_modeling._protocols_loop_modeling_
)
last_proposal_density_ratio()
(in
RNA_Minimizer
)
LigandDockProtocolAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
LoopmodelWrapper
(in
rosetta.protocols.loop_build._protocols_loop_build_
)
last_proposal_density_ratio()
(in
RNA_Relaxer
)
LigandDockProtocolCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
LoopmodelWrapperAP
(in
rosetta.protocols.loop_build._protocols_loop_build_
)
last_proposal_density_ratio()
(in
ReportToDB
)
LigandMinusProteinPlus
(in
FunctionSign
)
LoopmodelWrapperCAP
(in
rosetta.protocols.loop_build._protocols_loop_build_
)
last_proposal_density_ratio()
(in
TrajectoryReportToDB
)
LigandMinusProteinPlus
(in
RDFBase
)
LoopmodelWrapperCreator
(in
rosetta.protocols.loop_build._protocols_loop_build_
)
last_proposal_density_ratio()
(in
SetupForFibrilMover
)
LigandMotifSearch
(in
rosetta.protocols.motifs._protocols_motifs_
)
LoopmodelWrapperCreatorAP
(in
rosetta.protocols.loop_build._protocols_loop_build_
)
last_proposal_density_ratio()
(in
BluePrintBDR
)
LigandMotifSearchAP
(in
rosetta.protocols.motifs._protocols_motifs_
)
LoopmodelWrapperCreatorCAP
(in
rosetta.protocols.loop_build._protocols_loop_build_
)
last_proposal_density_ratio()
(in
CircularPermutation
)
LigandMotifSearchCAP
(in
rosetta.protocols.motifs._protocols_motifs_
)
LoopMover
(in
rosetta.protocols.loop_modeling._protocols_loop_modeling_
)
last_proposal_density_ratio()
(in
MatchResiduesMover
)
LigandPlusProteinMinus
(in
FunctionSign
)
LoopMover
(in
rosetta.protocols.loops.loop_mover._protocols_loops_loop_mover_
)
last_proposal_density_ratio()
(in
SheetConstraintsRCG
)
LigandPlusProteinMinus
(in
RDFBase
)
LoopMover_Perturb_CCD
(in
rosetta.protocols.loops.loop_mover.perturb._protocols_loops_loop_mover_perturb_
)
last_proposal_density_ratio()
(in
SetAACompositionPotential
)
light_chain_type_enum_to_string()
(in
AntibodyEnumManager
)
LoopMover_Perturb_CCDAP
(in
rosetta.protocols.loops.loop_mover.perturb._protocols_loops_loop_mover_perturb_
)
last_proposal_density_ratio()
(in
SetSecStructEnergies
)
light_chain_type_is_present()
(in
AntibodyEnumManager
)
LoopMover_Perturb_CCDCAP
(in
rosetta.protocols.loops.loop_mover.perturb._protocols_loops_loop_mover_perturb_
)
last_proposal_density_ratio()
(in
FlexPacker
)
light_chain_type_string_to_enum()
(in
AntibodyEnumManager
)
LoopMover_Perturb_CCDCreator
(in
rosetta.protocols.loops.loop_mover.perturb._protocols_loops_loop_mover_perturb_
)
last_proposal_density_ratio()
(in
FlexPepDockingAbInitio
)
LightChainTypeEnum
(in
rosetta.protocols.antibody._protocols_antibody_
)
LoopMover_Perturb_CCDCreatorAP
(in
rosetta.protocols.loops.loop_mover.perturb._protocols_loops_loop_mover_perturb_
)
last_proposal_density_ratio()
(in
FlexPepDockingLowRes
)
LightChainTypeEnum_start
(in
rosetta.protocols.antibody
)
LoopMover_Perturb_CCDCreatorCAP
(in
rosetta.protocols.loops.loop_mover.perturb._protocols_loops_loop_mover_perturb_
)
last_proposal_density_ratio()
(in
FlexPepDockingProtocol
)
LightChainTypeEnum_start
(in
LightChainTypeEnum
)
LoopMover_Perturb_KIC
(in
rosetta.protocols.loops.loop_mover.perturb._protocols_loops_loop_mover_perturb_
)
last_proposal_density_ratio()
(in
FloppyTailMover
)
LightChainTypeEnum_start
(in
rosetta.protocols.antibody._protocols_antibody_
)
LoopMover_Perturb_KICAP
(in
rosetta.protocols.loops.loop_mover.perturb._protocols_loops_loop_mover_perturb_
)
last_proposal_density_ratio()
(in
FlxbbDesign
)
LightChainTypeEnum_total
(in
rosetta.protocols.antibody
)
LoopMover_Perturb_KICCAP
(in
rosetta.protocols.loops.loop_mover.perturb._protocols_loops_loop_mover_perturb_
)
last_proposal_density_ratio()
(in
FlxbbDesignPack
)
LightChainTypeEnum_total
(in
LightChainTypeEnum
)
LoopMover_Perturb_KICCreator
(in
rosetta.protocols.loops.loop_mover.perturb._protocols_loops_loop_mover_perturb_
)
last_proposal_density_ratio()
(in
InterlockAroma
)
LightChainTypeEnum_total
(in
rosetta.protocols.antibody._protocols_antibody_
)
LoopMover_Perturb_KICCreatorAP
(in
rosetta.protocols.loops.loop_mover.perturb._protocols_loops_loop_mover_perturb_
)
last_proposal_density_ratio()
(in
BDR
)
limit()
(in
TopOutFunc
)
LoopMover_Perturb_KICCreatorCAP
(in
rosetta.protocols.loops.loop_mover.perturb._protocols_loops_loop_mover_perturb_
)
last_proposal_density_ratio()
(in
VarLengthBuild
)
limit()
(in
SetupNCSMover
)
LoopMover_Perturb_QuickCCD
(in
rosetta.protocols.loops.loop_mover.perturb._protocols_loops_loop_mover_perturb_
)
last_proposal_density_ratio()
(in
RemodelConstraintGenerator
)
limit()
(in
SilentStructStore
)
LoopMover_Perturb_QuickCCD_Moves
(in
rosetta.protocols.loops.loop_mover.perturb._protocols_loops_loop_mover_perturb_
)
last_proposal_density_ratio()
(in
NonlocalFrags
)
limit_groups()
(in
ClusterBase
)
LoopMover_Perturb_QuickCCD_MovesAP
(in
rosetta.protocols.loops.loop_mover.perturb._protocols_loops_loop_mover_perturb_
)
last_proposal_density_ratio()
(in
TorsionFragmentMover
)
limit_groupsize()
(in
ClusterBase
)
LoopMover_Perturb_QuickCCD_MovesCAP
(in
rosetta.protocols.loops.loop_mover.perturb._protocols_loops_loop_mover_perturb_
)
last_proposal_density_ratio()
(in
GeneralizedKIC
)
limit_groupsize()
(in
ClusterBase
)
LoopMover_Perturb_QuickCCD_MovesCreator
(in
rosetta.protocols.loops.loop_mover.perturb._protocols_loops_loop_mover_perturb_
)
last_proposal_density_ratio()
(in
AnchoredGraftMover
)
limit_to_positions()
(in
ConservativeDesignOperation
)
LoopMover_Perturb_QuickCCD_MovesCreatorAP
(in
rosetta.protocols.loops.loop_mover.perturb._protocols_loops_loop_mover_perturb_
)
last_proposal_density_ratio()
(in
CCDEndsGraftMover
)
limit_total_structures()
(in
ClusterBase
)
LoopMover_Perturb_QuickCCD_MovesCreatorCAP
(in
rosetta.protocols.loops.loop_mover.perturb._protocols_loops_loop_mover_perturb_
)
last_proposal_density_ratio()
(in
GraftMoverBase
)
LimitAromaChi2_RotamerSetOperation
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
LoopMover_Perturb_QuickCCDAP
(in
rosetta.protocols.loops.loop_mover.perturb._protocols_loops_loop_mover_perturb_
)
last_proposal_density_ratio()
(in
DeleteRegionMover
)
LimitAromaChi2_RotamerSetOperationAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
LoopMover_Perturb_QuickCCDCAP
(in
rosetta.protocols.loops.loop_mover.perturb._protocols_loops_loop_mover_perturb_
)
last_proposal_density_ratio()
(in
InsertPoseIntoPoseMover
)
LimitAromaChi2_RotamerSetOperationCAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
LoopMover_Perturb_QuickCCDCreator
(in
rosetta.protocols.loops.loop_mover.perturb._protocols_loops_loop_mover_perturb_
)
last_proposal_density_ratio()
(in
KeepRegionMover
)
LimitAromaChi2Operation
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
LoopMover_Perturb_QuickCCDCreatorAP
(in
rosetta.protocols.loops.loop_mover.perturb._protocols_loops_loop_mover_perturb_
)
last_proposal_density_ratio()
(in
ReplaceRegionMover
)
LimitAromaChi2OperationAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
LoopMover_Perturb_QuickCCDCreatorCAP
(in
rosetta.protocols.loops.loop_mover.perturb._protocols_loops_loop_mover_perturb_
)
last_proposal_density_ratio()
(in
BackboneGridSampler
)
LimitAromaChi2OperationCAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
LoopMover_Refine_Backrub
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
BundleGridSampler
)
LimitAromaChi2OperationCreator
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
LoopMover_Refine_BackrubAP
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
FitSimpleHelix
)
LimitAromaChi2OperationCreatorAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
LoopMover_Refine_BackrubCAP
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
MakeBundle
)
LimitAromaChi2OperationCreatorCAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
LoopMover_Refine_BackrubCreator
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
MakeBundleHelix
)
LimitHitsPerRotamerFilter
(in
rosetta.protocols.match.output._protocols_match_output_
)
LoopMover_Refine_BackrubCreatorAP
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
PerturbBundle
)
LimitHitsPerRotamerFilterAP
(in
rosetta.protocols.match.output._protocols_match_output_
)
LoopMover_Refine_BackrubCreatorCAP
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
PerturbBundleHelix
)
LimitHitsPerRotamerFilterCAP
(in
rosetta.protocols.match.output._protocols_match_output_
)
LoopMover_Refine_CCD
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
BackboneTorsionPerturbation
)
Line
(in
rosetta.core.sequence._core_sequence_
)
LoopMover_Refine_CCDAP
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
BackboneTorsionSampler
)
LineAP
(in
rosetta.core.sequence._core_sequence_
)
LoopMover_Refine_CCDCAP
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
CartesianHybridize
)
linear
(in
InterpolationType
)
LoopMover_Refine_CCDCreator
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
CartesianSampler
)
linear
(in
rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
)
LoopMover_Refine_CCDCreatorAP
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
ChunkTrialMover
)
linear
(in
rosetta.protocols.canonical_sampling
)
LoopMover_Refine_CCDCreatorCAP
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
DomainAssembly
)
linear_algebra
(in
rosetta.numeric
)
LoopMover_Refine_KIC
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
FoldTreeHybridize
)
linear_chainbreak
(in
ScoreType
)
LoopMover_Refine_KICAP
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
HybridizeProtocol
)
linear_chainbreak
(in
rosetta.core.scoring._core_scoring_
)
LoopMover_Refine_KICCAP
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
InsertChunkMover
)
linear_chainbreak
(in
rosetta.core.scoring
)
LoopMover_Refine_KICCreator
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
MRMover
)
linear_chainbreak
(in
rosetta
)
LoopMover_Refine_KICCreatorAP
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
WeightedFragmentSmoothTrialMover
)
linear_chainbreak()
(in
rosetta.protocols.forge.methods._protocols_forge_methods_
)
LoopMover_Refine_KICCreatorCAP
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
WeightedFragmentTrialMover
)
linear_interpolate()
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
LoopMover_SlidingWindow
(in
rosetta.protocols.loop_build._protocols_loop_build_
)
last_proposal_density_ratio()
(in
IdealizeMover
)
LinearChainbreakEnergy
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
LoopMover_SlidingWindowAP
(in
rosetta.protocols.loop_build._protocols_loop_build_
)
last_proposal_density_ratio()
(in
BalancedKicMover
)
LinearChainbreakEnergyAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
LoopMover_SlidingWindowCAP
(in
rosetta.protocols.loop_build._protocols_loop_build_
)
last_proposal_density_ratio()
(in
KicMover
)
LinearChainbreakEnergyCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
LoopMover_SlidingWindowCreator
(in
rosetta.protocols.loop_build._protocols_loop_build_
)
last_proposal_density_ratio()
(in
AddHydrogen
)
LinearChainbreakEnergyCreator
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
LoopMover_SlidingWindowCreatorAP
(in
rosetta.protocols.loop_build._protocols_loop_build_
)
last_proposal_density_ratio()
(in
AddHydrogens
)
LinearChainbreakEnergyCreatorAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
LoopMover_SlidingWindowCreatorCAP
(in
rosetta.protocols.loop_build._protocols_loop_build_
)
last_proposal_density_ratio()
(in
CompoundTranslate
)
LinearChainbreakEnergyCreatorCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
LoopMoverAP
(in
rosetta.protocols.loop_modeling._protocols_loop_modeling_
)
last_proposal_density_ratio()
(in
ComputeLigandRDF
)
LinearFunc
(in
rosetta.protocols.moves._protocols_moves_
)
LoopMoverAP
(in
rosetta.protocols.loops.loop_mover._protocols_loops_loop_mover_
)
last_proposal_density_ratio()
(in
FinalMinimizer
)
LinearFuncAP
(in
rosetta.protocols.moves._protocols_moves_
)
LoopMoverCAP
(in
rosetta.protocols.loop_modeling._protocols_loop_modeling_
)
last_proposal_density_ratio()
(in
GrowLigand
)
LinearFuncCAP
(in
rosetta.protocols.moves._protocols_moves_
)
LoopMoverCAP
(in
rosetta.protocols.loops.loop_mover._protocols_loops_loop_mover_
)
last_proposal_density_ratio()
(in
HighResDocker
)
LinearFunction
(in
rosetta.numeric.interpolation.spline._numeric_interpolation_spline_
)
LoopMoverFactory
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
InterfaceScoreCalculator
)
LinearFunctionAP
(in
rosetta.numeric.interpolation.spline._numeric_interpolation_spline_
)
LoopMoverFactoryAP
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
LigandDesign
)
LinearFunctionCAP
(in
rosetta.numeric.interpolation.spline._numeric_interpolation_spline_
)
LoopMoverFactoryCAP
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
MinimizeBackbone
)
linearize_fold_tree()
(in
rosetta.core.kinematics._core_kinematics_
)
LoopMoverFromCommandLine
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
MinimizeLigand
)
LinearMemEdge
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
LoopMoverFromCommandLineAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
RandomConformerMover
)
LinearMemEdgeAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
LoopMoverFromCommandLineCAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
RandomConformers
)
LinearMemEdgeCAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
LoopMoverFromCommandLineCreator
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
RigidSearchMover
)
LinearMemNode
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
LoopMoverFromCommandLineCreatorAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
Rotate
)
LinearMemNodeAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
LoopMoverFromCommandLineCreatorCAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
Rotates
)
LinearMemNodeCAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
LoopMoverGroup
(in
rosetta.protocols.loop_modeling.utilities._protocols_loop_modeling_utilities_
)
last_proposal_density_ratio()
(in
SlideTogether
)
LinearMemoryInteractionGraph
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
LoopMoverGroupAP
(in
rosetta.protocols.loop_modeling.utilities._protocols_loop_modeling_utilities_
)
last_proposal_density_ratio()
(in
StartFrom
)
LinearMemoryInteractionGraphAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
LoopMoverGroupCAP
(in
rosetta.protocols.loop_modeling.utilities._protocols_loop_modeling_utilities_
)
last_proposal_density_ratio()
(in
TetherLigand
)
LinearMemoryInteractionGraphCAP
(in
rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
)
LoopOver
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
Transform
)
LinearPenaltyFunction
(in
rosetta.core.scoring.func._core_scoring_func_
)
LoopOverAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
Translate
)
LinearPenaltyFunctionAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
LoopOverCAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
UnconstrainedTorsionsMover
)
LinearPenaltyFunctionCAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
LoopOverCreator
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
WriteLigandMolFile
)
LineCAP
(in
rosetta.core.sequence._core_sequence_
)
LoopOverCreatorAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
LoopBuildMover
)
LineMinimizationAlgorithm
(in
rosetta.core.optimization._core_optimization_
)
LoopOverCreatorCAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
LoopmodelWrapper
)
LineMinimizationAlgorithmAP
(in
rosetta.core.optimization._core_optimization_
)
LoopPivots
(in
rosetta.protocols.kinematic_closure.pivot_pickers._protocols_kinematic_closure_pivot_pickers_
)
last_proposal_density_ratio()
(in
LoopBuilder
)
LineMinimizationAlgorithmCAP
(in
rosetta.core.optimization._core_optimization_
)
LoopPivotsAP
(in
rosetta.protocols.kinematic_closure.pivot_pickers._protocols_kinematic_closure_pivot_pickers_
)
last_proposal_density_ratio()
(in
LoopModeler
)
linenum()
(in
ResidueIndexDescriptionFromFile
)
LoopPivotsCAP
(in
rosetta.protocols.kinematic_closure.pivot_pickers._protocols_kinematic_closure_pivot_pickers_
)
last_proposal_density_ratio()
(in
LoopMover
)
Link
(in
rosetta.utility.signals._utility_signals_
)
LoopProtocol
(in
rosetta.protocols.loop_modeling._protocols_loop_modeling_
)
last_proposal_density_ratio()
(in
LoopProtocol
)
link_cache()
(in
WorkUnit
)
LoopProtocolAP
(in
rosetta.protocols.loop_modeling._protocols_loop_modeling_
)
last_proposal_density_ratio()
(in
MinimizationRefiner
)
link_torsion_vectors()
(in
MinimizerMap
)
LoopProtocolCAP
(in
rosetta.protocols.loop_modeling._protocols_loop_modeling_
)
last_proposal_density_ratio()
(in
RepackingRefiner
)
link_torsion_vectors()
(in
SymMinimizerMap
)
LoopProtocolCreator
(in
rosetta.protocols.loop_modeling._protocols_loop_modeling_
)
last_proposal_density_ratio()
(in
RotamerTrialsRefiner
)
link_vectors()
(in
DOF_Node
)
LoopProtocolCreatorAP
(in
rosetta.protocols.loop_modeling._protocols_loop_modeling_
)
last_proposal_density_ratio()
(in
LegacyKicSampler
)
LinkageType
(in
rosetta.core.scoring.carbohydrates._core_scoring_carbohydrates_
)
LoopProtocolCreatorCAP
(in
rosetta.protocols.loop_modeling._protocols_loop_modeling_
)
last_proposal_density_ratio()
(in
AcceptanceCheck
)
LinkAP
(in
rosetta.utility.signals._utility_signals_
)
LoopRefineInnerCycle
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
LoopFilter
)
LinkCAP
(in
rosetta.utility.signals._utility_signals_
)
LoopRefineInnerCycleAP
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
LoopMoverGroup
)
linker_count2score()
(in
rosetta.protocols.sic_dock._protocols_sic_dock_
)
LoopRefineInnerCycleCAP
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
PrepareForCentroid
)
LinkerScore
(in
rosetta.protocols.sic_dock._protocols_sic_dock_
)
LoopRefineInnerCycleContainer
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
PrepareForFullatom
)
LinkerScoreAP
(in
rosetta.protocols.sic_dock._protocols_sic_dock_
)
LoopRefineInnerCycleContainerAP
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
FastGapMover
)
LinkerScoreCAP
(in
rosetta.protocols.sic_dock._protocols_sic_dock_
)
LoopRefineInnerCycleContainerCAP
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
LoopHashDiversifier
)
linkExemplarsThroughSolvent()
(in
PocketGrid
)
LoopRefineInnerCycleContainerCreator
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
LoopHashLibrary
)
LinkInformation
(in
rosetta.core.io.pdb._core_io_pdb_
)
LoopRefineInnerCycleContainerCreatorAP
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
LoopHashMoverWrapper
)
LinkInformationAP
(in
rosetta.core.io.pdb._core_io_pdb_
)
LoopRefineInnerCycleContainerCreatorCAP
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
LoopHashRelaxProtocol
)
LinkInformationCAP
(in
rosetta.core.io.pdb._core_io_pdb_
)
LoopRefineInnerCycleFactory
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
Mover_LoopHashRefine
)
LinkResidues
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
LoopRefineInnerCycleFactoryAP
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
FoldTreeFromLoops
)
LinkResiduesAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
LoopRefineInnerCycleFactoryCAP
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
CCDLoopClosureMover
)
LinkResiduesCAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
LoopRefineInnerCycleName
(in
rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
)
last_proposal_density_ratio()
(in
FASelectSlidingWindowLoopClosure
)
LinkResiduesCreator
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
LoopRelaxMover
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
last_proposal_density_ratio()
(in
SlidingWindowLoopClosure
)
LinkResiduesCreatorAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
LoopRelaxMoverAP
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
last_proposal_density_ratio()
(in
WidthFirstSlidingWindowLoopClosure
)
LinkResiduesCreatorCAP
(in
rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
)
LoopRelaxMoverCAP
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
last_proposal_density_ratio()
(in
KinematicMover
)
LinkUnit
(in
rosetta.utility.signals._utility_signals_
)
LoopRelaxMoverCreator
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
last_proposal_density_ratio()
(in
KinematicWrapper
)
LinkUnitAP
(in
rosetta.utility.signals._utility_signals_
)
LoopRelaxMoverCreatorAP
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
last_proposal_density_ratio()
(in
LoopCM
)
LinkUnitCAP
(in
rosetta.utility.signals._utility_signals_
)
LoopRelaxMoverCreatorCAP
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
last_proposal_density_ratio()
(in
LoopRefineInnerCycle
)
linmem_ig()
(in
PackerTask
)
LoopRelaxThreadingMover
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
last_proposal_density_ratio()
(in
LoopRefineInnerCycleContainer
)
linmem_ig()
(in
PackerTask_
)
LoopRelaxThreadingMoverAP
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
last_proposal_density_ratio()
(in
RepackTrial
)
linmem_ig_history_size()
(in
PackerTask
)
LoopRelaxThreadingMoverCAP
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
last_proposal_density_ratio()
(in
ShearMinCCDTrial
)
linmem_ig_history_size()
(in
PackerTask_
)
LoopRemodel
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
SmallMinCCDTrial
)
LIPID
(in
rosetta
)
LoopRemodelAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
MakeRotLibMover
)
LIPID
(in
rosetta.core.chemical
)
LoopRemodelCAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
MatcherMover
)
LIPID
(in
rosetta.core.chemical._core_chemical_
)
LoopRemodelCreator
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
ExtractSubposeMover
)
LIPID
(in
ResidueProperty
)
LoopRemodelCreatorAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
MatDesGreedyOptMutationMover
)
lipid_acc_data()
(in
MembraneInfo
)
LoopRemodelCreatorCAP
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
last_proposal_density_ratio()
(in
SchemePlaceMotifsMover
)
lipid_burial()
(in
LipidAccInfo
)
loopres_atom_names()
(in
ResInteractions
)
last_proposal_density_ratio()
(in
SymDofMover
)
lipid_exposure()
(in
LipidAccInfo
)
loopres_atoms()
(in
ResidueVicinityInfo
)
last_proposal_density_ratio()
(in
CartesianMD
)
LipidAccInfo
(in
rosetta.core.conformation.membrane._core_conformation_membrane_
)
loopres_base2_atom_names()
(in
ResInteractions
)
last_proposal_density_ratio()
(in
MDBase
)
LipidAccInfoAP
(in
rosetta.core.conformation.membrane._core_conformation_membrane_
)
loopres_base2_atoms()
(in
ResidueVicinityInfo
)
last_proposal_density_ratio()
(in
MedalExchangeMover
)
LipidAccInfoCAP
(in
rosetta.core.conformation.membrane._core_conformation_membrane_
)
loopres_base_atom_names()
(in
ResInteractions
)
last_proposal_density_ratio()
(in
MedalMover
)
LipidBurial()
(in
MembraneTopology
)
loopres_base_atoms()
(in
ResidueVicinityInfo
)
last_proposal_density_ratio()
(in
AddMPLigandMover
)
LipidExposure()
(in
MembraneTopology
)
LoopResult
(in
rosetta.protocols.loops.loop_mover._protocols_loops_loop_mover_
)
last_proposal_density_ratio()
(in
AddMembraneMover
)
LipoDefined()
(in
MembraneTopology
)
LoopRlxMover
(in
rosetta.protocols.antibody_legacy._protocols_antibody_legacy_
)
last_proposal_density_ratio()
(in
FlipMover
)
LipoFileLoader
(in
rosetta.protocols.membrane.io._protocols_membrane_io_
)
LoopRlxMoverAP
(in
rosetta.protocols.antibody_legacy._protocols_antibody_legacy_
)
last_proposal_density_ratio()
(in
MembranePositionFromTopologyMover
)
LipoFileLoaderAP
(in
rosetta.protocols.membrane.io._protocols_membrane_io_
)
LoopRlxMoverCAP
(in
rosetta.protocols.antibody_legacy._protocols_antibody_legacy_
)
last_proposal_density_ratio()
(in
RandomPositionRotationMover
)
LipoFileLoaderCAP
(in
rosetta.protocols.membrane.io._protocols_membrane_io_
)
LoopRmsdEvaluator
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
last_proposal_density_ratio()
(in
RandomPositionTranslationMover
)
LipoFileLoaderCreator
(in
rosetta.protocols.membrane.io._protocols_membrane_io_
)
LoopRmsdEvaluatorAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
last_proposal_density_ratio()
(in
RotationMover
)
LipoFileLoaderCreatorAP
(in
rosetta.protocols.membrane.io._protocols_membrane_io_
)
LoopRmsdEvaluatorCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
last_proposal_density_ratio()
(in
SetMembraneCenterMover
)
LipoFileLoaderCreatorCAP
(in
rosetta.protocols.membrane.io._protocols_membrane_io_
)
loops
(in
rosetta.protocols
)
last_proposal_density_ratio()
(in
SetMembraneNormalMover
)
LipoFileOptions
(in
rosetta.protocols.membrane.io._protocols_membrane_io_
)
Loops
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
SetMembranePositionMover
)
LipoFileOptionsAP
(in
rosetta.protocols.membrane.io._protocols_membrane_io_
)
loops()
(in
LoopCycle
)
last_proposal_density_ratio()
(in
TransformIntoMembraneMover
)
LipoFileOptionsCAP
(in
rosetta.protocols.membrane.io._protocols_membrane_io_
)
loops()
(in
AnchorMoversData
)
last_proposal_density_ratio()
(in
TranslationMover
)
LipoFileOptionsCreator
(in
rosetta.protocols.membrane.io._protocols_membrane_io_
)
loops()
(in
LoopRelaxMover
)
last_proposal_density_ratio()
(in
TranslationRotationMover
)
LipoFileOptionsCreatorAP
(in
rosetta.protocols.membrane.io._protocols_membrane_io_
)
loops()
(in
ThreadingJob
)
last_proposal_density_ratio()
(in
SymmetricAddMembraneMover
)
LipoFileOptionsCreatorCAP
(in
rosetta.protocols.membrane.io._protocols_membrane_io_
)
loops()
(in
SS_Info2
)
last_proposal_density_ratio()
(in
VisualizeEmbeddingMover
)
lipsfile()
(in
AddMembraneMover
)
loops()
(in
FoldTreeFromLoops
)
last_proposal_density_ratio()
(in
VisualizeMembraneMover
)
list()
(in
Hairpins
)
loops()
(in
GuardedLoopsFromFile
)
last_proposal_density_ratio()
(in
ZincHeterodimerMover
)
list_dir()
(in
rosetta.utility.file._utility_file_
)
loops()
(in
Loops
)
last_proposal_density_ratio()
(in
MotifGraftMover
)
list_pools()
(in
QuotaCollector
)
loops()
(in
LoopMover
)
last_proposal_density_ratio()
(in
MotifDnaPacker
)
list_valid_PyMOL_colors()
(in
rosetta.PyMolLink
)
loops()
(in
RestrictToLoops
)
last_proposal_density_ratio()
(in
CompositionMover
)
listener_tag_to_name()
(in
rosetta.basic.message_listening._basic_message_listening_
)
loops_are_closed()
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
last_proposal_density_ratio()
(in
CycleMover
)
listener_tags
(in
rosetta.basic.message_listening._basic_message_listening_
)
loops_around_residues()
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
CyclicMover
)
LITERAL
(in
rosetta.numeric.expression_parser
)
loops_buns_polar_calc_name()
(in
BDR
)
last_proposal_density_ratio()
(in
DsspMover
)
LITERAL
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
loops_definers
(in
rosetta.protocols.loops
)
last_proposal_density_ratio()
(in
FilterMover
)
LITERAL
(in
TokenType
)
loops_file_data()
(in
LoopRelaxMover
)
last_proposal_density_ratio()
(in
FilterReporterMover
)
literal_value()
(in
ArithmeticASTValue
)
loops_file_data()
(in
GuardedLoopsFromFile
)
last_proposal_density_ratio()
(in
IfMover
)
LiteralExpression
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
loops_from_alignment()
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
last_proposal_density_ratio()
(in
IteratedConvergenceMover
)
LiteralExpressionAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
loops_from_string()
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
JumpOutMover
)
LiteralExpressionCAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
loops_from_transitive_alignments()
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
last_proposal_density_ratio()
(in
MCShowMover
)
LiteralToken
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
loops_set_chainbreak_weight()
(in
rosetta.protocols.loops.loop_mover._protocols_loops_loop_mover_
)
last_proposal_density_ratio()
(in
MonteCarloUtil
)
LiteralTokenAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
loops_set_move_map()
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
MoveMapMover
)
LiteralTokenCAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
LoopsAP
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
Mover
)
LJ
(in
rosetta.core.scoring.sasa
)
LoopsCAP
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
MoverApplyingMover
)
LJ
(in
rosetta.core.scoring.sasa._core_scoring_sasa_
)
LoopScoreInfo
(in
rosetta.core.scoring.loop_graph._core_scoring_loop_graph_
)
last_proposal_density_ratio()
(in
MoverContainer
)
LJ
(in
SasaRadii
)
LoopScoreInfoAP
(in
rosetta.core.scoring.loop_graph._core_scoring_loop_graph_
)
last_proposal_density_ratio()
(in
MoverForPoseList
)
lj_cutoff()
(in
MatchCollisionFilter
)
LoopScoreInfoCAP
(in
rosetta.core.scoring.loop_graph._core_scoring_loop_graph_
)
last_proposal_density_ratio()
(in
NullMover
)
lj_radius()
(in
AtomType
)
LoopsDatabaseDefiner
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
PDBDumpMover
)
lj_radius()
(in
MMAtomType
)
LoopsDatabaseDefinerAP
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
ProfilerMover
)
lj_radius()
(in
Etable
)
LoopsDatabaseDefinerCAP
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
PyMolMover
)
lj_three_bond_radius()
(in
MMAtomType
)
LoopsDatabaseDefinerCreator
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
RampingMover
)
lj_three_bond_wdepth()
(in
MMAtomType
)
LoopsDatabaseDefinerCreatorAP
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
RandomMover
)
lj_wdepth()
(in
AtomType
)
LoopsDatabaseDefinerCreatorCAP
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
RepeatMover
)
lj_wdepth()
(in
MMAtomType
)
LoopsDefiner
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
SequenceMover
)
lj_wdepth()
(in
Etable
)
LoopsDefinerAP
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
StructureRestrictor
)
ljatr()
(in
Etable
)
LoopsDefinerCAP
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
TrialMover
)
ljrep()
(in
Etable
)
LoopsDefinerCreator
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
VectorPoseMover
)
lk_ball
(in
ScoreType
)
LoopsDefinerCreatorAP
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
WhileMover
)
lk_ball
(in
rosetta.core.scoring._core_scoring_
)
LoopsDefinerCreatorCAP
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
StructAvrgMover
)
lk_ball
(in
rosetta.core.scoring
)
LoopsDefinerFactory
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
NcbbDockDesignProtocol
)
lk_ball
(in
rosetta
)
LoopsDefinerFactoryAP
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
OopCreatorMover
)
lk_ball_iso
(in
ScoreType
)
LoopsDefinerFactoryCAP
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
OopDockDesignProtocol
)
lk_ball_iso
(in
rosetta.core.scoring._core_scoring_
)
LoopsDefinerLoader
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
CartesianNormalModeMover
)
lk_ball_iso
(in
rosetta.core.scoring
)
LoopsDefinerLoaderAP
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
NormalModeMinimizer
)
lk_ball_iso
(in
rosetta
)
LoopsDefinerLoaderCAP
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
NormalModeRelaxMover
)
LK_BALL_POSE_INFO
(in
Enum
)
LoopsDefinerLoaderCreator
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
TorsionNormalModeMover
)
LK_BALL_POSE_INFO
(in
CacheableDataType
)
LoopsDefinerLoaderCreatorAP
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
SetupPoissonBoltzmannPotential
)
lk_ball_wtd
(in
ScoreType
)
LoopsDefinerLoaderCreatorCAP
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
AddChainBreak
)
lk_ball_wtd
(in
rosetta.core.scoring._core_scoring_
)
LoopsExplicitDefiner
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
AddSidechainConstraintsToHotspots
)
lk_ball_wtd
(in
rosetta.core.scoring
)
LoopsExplicitDefinerAP
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
BackrubDDMover
)
lk_ball_wtd
(in
rosetta
)
LoopsExplicitDefinerCAP
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
BestHotspotCstMover
)
LK_BallEnergy
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
LoopsExplicitDefinerCreator
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
BuildAlaPose
)
LK_BallEnergyAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
LoopsExplicitDefinerCreatorAP
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
DesignMinimizeHbonds
)
LK_BallEnergyCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
LoopsExplicitDefinerCreatorCAP
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
DisulfideMover
)
LK_BallEnergyCreator
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
LoopsFileData
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
DockAndRetrieveSidechains
)
LK_BallEnergyCreatorAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
LoopsFileDataAP
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
DockWithHotspotMover
)
LK_BallEnergyCreatorCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
LoopsFileDataCAP
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
FavorNativeResiduePreCycle
)
lk_costheta
(in
ScoreType
)
LoopsFileDefiner
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
FavorNonNativeResiduePreCycle
)
lk_costheta
(in
rosetta.core.scoring._core_scoring_
)
LoopsFileDefinerAP
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
HotspotDisjointedFoldTreeMover
)
lk_costheta
(in
rosetta.core.scoring
)
LoopsFileDefinerCAP
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
HotspotHasherMover
)
lk_costheta
(in
rosetta
)
LoopsFileDefinerCreator
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
InterfaceRecapitulationMover
)
lk_dgfree()
(in
AtomType
)
LoopsFileDefinerCreatorAP
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
LoopFinder
)
lk_dgfree()
(in
Etable
)
LoopsFileDefinerCreatorCAP
(in
rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
)
last_proposal_density_ratio()
(in
LoopLengthChange
)
lk_hack
(in
ScoreType
)
LoopsFileFallbackConfiguration
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
LoopMoverFromCommandLine
)
lk_hack
(in
rosetta.core.scoring._core_scoring_
)
LoopsFileFallbackConfigurationAP
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
LoopOver
)
lk_hack
(in
rosetta.core.scoring
)
LoopsFileFallbackConfigurationCAP
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
LoopRemodel
)
LK_hack
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
LoopsFileFallbackConfigurationCreator
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
MapHotspot
)
lk_hack
(in
rosetta
)
LoopsFileFallbackConfigurationCreatorAP
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
PatchdockTransform
)
LK_hackAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
LoopsFileFallbackConfigurationCreatorCAP
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
PeptideStapleDesignMover
)
LK_hackCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
LoopsFileIO
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
PlaceOnLoop
)
LK_hackCreator
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
LoopsFileIOAP
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
PlaceSimultaneouslyMover
)
LK_hackCreatorAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
LoopsFileIOCAP
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
PlaceStubMover
)
LK_hackCreatorCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
LoopsFileLoader
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
PlacementAuctionMover
)
lk_inv_lambda2()
(in
Etable
)
LoopsFileLoaderAP
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
PlacementMinimizationMover
)
lk_lambda()
(in
AtomType
)
LoopsFileLoaderCAP
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
PrepackMover
)
lk_lambda()
(in
Etable
)
LoopsFileLoaderCreator
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
ProteinInterfaceMultiStateDesignMover
)
lk_nonpolar
(in
ScoreType
)
LoopsFileLoaderCreatorAP
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
RandomMutation
)
lk_nonpolar
(in
rosetta.core.scoring._core_scoring_
)
LoopsFileLoaderCreatorCAP
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
RepackMinimize
)
lk_nonpolar
(in
rosetta.core.scoring
)
LoopsFileOptions
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
SaveAndRetrieveSidechains
)
lk_nonpolar
(in
rosetta
)
LoopsFileOptionsAP
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
SetAtomTree
)
lk_nonpolar_intra_RNA
(in
ScoreType
)
LoopsFileOptionsCAP
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
SetTemperatureFactor
)
lk_nonpolar_intra_RNA
(in
rosetta.core.scoring._core_scoring_
)
LoopsFileOptionsCreator
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
SetupHotspotConstraintsLoopsMover
)
lk_nonpolar_intra_RNA
(in
rosetta.core.scoring
)
LoopsFileOptionsCreatorAP
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
SetupHotspotConstraintsMover
)
lk_nonpolar_intra_RNA
(in
rosetta
)
LoopsFileOptionsCreatorCAP
(in
rosetta.protocols.loops._protocols_loops_
)
last_proposal_density_ratio()
(in
ShoveResidueMover
)
lk_polar
(in
ScoreType
)
loopstring_to_loopregions()
(in
rosetta.protocols.mpi_refinement._protocols_mpi_refinement_
)
last_proposal_density_ratio()
(in
SpinMover
)
lk_polar
(in
rosetta.core.scoring._core_scoring_
)
loopstring_to_loopvector()
(in
rosetta.protocols.mpi_refinement._protocols_mpi_refinement_
)
last_proposal_density_ratio()
(in
SubroutineMover
)
lk_polar
(in
rosetta.core.scoring
)
low_energy_conformers_are_known()
(in
RingConformerSet
)
last_proposal_density_ratio()
(in
TaskAwareCsts
)
lk_polar
(in
rosetta
)
low_temp()
(in
PackerTask
)
last_proposal_density_ratio()
(in
TopologyBrokerMover
)
lk_polar_intra_RNA
(in
ScoreType
)
low_temp()
(in
PackerTask_
)
last_proposal_density_ratio()
(in
TryRotamers
)
lk_polar_intra_RNA
(in
rosetta.core.scoring._core_scoring_
)
lower()
(in
HyperRectangle
)
last_proposal_density_ratio()
(in
VLB
)
lk_polar_intra_RNA
(in
rosetta.core.scoring
)
lower()
(in
Torsion
)
last_proposal_density_ratio()
(in
AutoRBMover
)
lk_polar_intra_RNA
(in
rosetta
)
lower()
(in
DeltaFilter
)
last_proposal_density_ratio()
(in
FragInsertAndAlignMover
)
lk_PolarNonPolar_pair_nblist
(in
rosetta.core.scoring._core_scoring_
)
lower()
(in
SelectByDeltaScoreOperation
)
last_proposal_density_ratio()
(in
GaussianRBSegmentMover
)
lk_PolarNonPolar_pair_nblist
(in
min_pair_data
)
lower_bound()
(in
PoissonBoltzmannPotential
)
last_proposal_density_ratio()
(in
HelicalGaussianMover
)
lk_PolarNonPolar_pair_nblist
(in
rosetta.core.scoring
)
lower_bound()
(in
DisulfideEntropyFilter
)
last_proposal_density_ratio()
(in
IdealizeHelicesMover
)
lk_PolarNonPolar_pair_nblist
(in
rosetta
)
lower_chain()
(in
RestrictToInterfaceVectorOperation
)
last_proposal_density_ratio()
(in
MakeStarTopologyMover
)
LK_PolarNonPolarEnergy
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
lower_connect()
(in
ResidueType
)
last_proposal_density_ratio()
(in
OptimizeThreadingMover
)
LK_PolarNonPolarEnergyAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
lower_connect()
(in
Residue
)
last_proposal_density_ratio()
(in
RBSegmentMover
)
LK_PolarNonPolarEnergyCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
lower_connect_angle_params()
(in
ResidueCartBondedParameters
)
last_proposal_density_ratio()
(in
RBSegmentRelax
)
LK_PolarNonPolarEnergyCreator
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
lower_connect_atom()
(in
ResidueType
)
last_proposal_density_ratio()
(in
SequenceShiftMover
)
LK_PolarNonPolarEnergyCreatorAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
lower_connect_atom()
(in
Residue
)
last_proposal_density_ratio()
(in
StrandTwistingMover
)
LK_PolarNonPolarEnergyCreatorCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
lower_connect_id()
(in
ResidueType
)
last_proposal_density_ratio()
(in
AtomCoordinateCstMover
)
lk_volume()
(in
AtomType
)
lower_edge_list_begin()
(in
Node
)
last_proposal_density_ratio()
(in
CentroidRelax
)
lk_volume()
(in
Etable
)
lower_edge_list_end()
(in
Node
)
last_proposal_density_ratio()
(in
ClassicRelax
)
lkb_res_data
(in
rosetta.core.scoring._core_scoring_
)
lower_neighbor_id()
(in
DenseNeighborConstIterator
)
last_proposal_density_ratio()
(in
FastRelax
)
lkb_res_data
(in
min_single_data
)
lower_neighbor_id()
(in
DenseNeighborIterator
)
last_proposal_density_ratio()
(in
LocalRelax
)
lkb_res_data
(in
rosetta.core.scoring
)
lower_neighbor_id()
(in
OneToAllNeighborConstIterator
)
last_proposal_density_ratio()
(in
MiniRelax
)
lkb_res_data
(in
rosetta
)
lower_neighbor_id()
(in
OneToAllNeighborIterator
)
last_proposal_density_ratio()
(in
RelaxProtocolBase
)
LKB_ResidueInfo
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
lower_neighbor_id()
(in
PeptideBondedNeighborConstIterator
)
last_proposal_density_ratio()
(in
MPFastRelaxMover
)
LKB_ResidueInfoAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
lower_neighbor_id()
(in
PeptideBondedNeighborIterator
)
last_proposal_density_ratio()
(in
MembraneCenterPerturbationMover
)
LKB_ResidueInfoCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
lower_neighbor_id()
(in
ResidueNeighborConstIterator
)
last_proposal_density_ratio()
(in
MembraneNormalPerturbationMover
)
LKB_ResiduesInfo
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
lower_neighbor_id()
(in
ResidueNeighborIterator
)
last_proposal_density_ratio()
(in
MovePoseToMembraneCenterMover
)
LKB_ResiduesInfoAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
lower_neighbor_id()
(in
CstResNeighbConstIterator
)
last_proposal_density_ratio()
(in
RigidBodyDeterministicSpinMover
)
LKB_ResiduesInfoCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
lower_neighbor_id()
(in
CstResNeighbIterator
)
last_proposal_density_ratio()
(in
RigidBodyDofPerturbMover
)
lkb_respair_data
(in
rosetta.core.scoring._core_scoring_
)
lower_neighbor_id()
(in
CentroidDisulfideEnergyContainer
)
last_proposal_density_ratio()
(in
RigidBodyDofRandomTransMover
)
lkb_respair_data
(in
min_pair_data
)
lower_neighbor_id()
(in
CentroidDisulfideNeighborConstIterator
)
last_proposal_density_ratio()
(in
RigidBodyDofRandomizeMover
)
lkb_respair_data
(in
rosetta.core.scoring
)
lower_neighbor_id()
(in
CentroidDisulfideNeighborIterator
)
last_proposal_density_ratio()
(in
RigidBodyDofSeqPerturbMover
)
lkb_respair_data
(in
rosetta
)
lower_neighbor_id()
(in
DisulfResNeighbConstIterator
)
last_proposal_density_ratio()
(in
RigidBodyDofSeqRandomizeMover
)
lm_control_struct
(in
rosetta.numeric.nls._numeric_nls_
)
lower_neighbor_id()
(in
DisulfResNeighbIterator
)
last_proposal_density_ratio()
(in
RigidBodyDofSeqTransMover
)
lm_control_structAP
(in
rosetta.numeric.nls._numeric_nls_
)
lower_neighbor_id()
(in
DisulfideMatchingEnergyContainer
)
last_proposal_density_ratio()
(in
RigidBodyDofTransMover
)
lm_control_structCAP
(in
rosetta.numeric.nls._numeric_nls_
)
lower_neighbor_id()
(in
DisulfideMatchingNeighborConstIterator
)
last_proposal_density_ratio()
(in
RigidBodyMotionMover
)
lm_enorm()
(in
rosetta.numeric.nls._numeric_nls_
)
lower_neighbor_id()
(in
DisulfideMatchingNeighborIterator
)
last_proposal_density_ratio()
(in
RigidBodyMover
)
lm_index()
(in
SO3coeffs
)
lower_neighbor_id()
(in
FullatomDisulfideEnergyContainer
)
last_proposal_density_ratio()
(in
RigidBodyPerturbMover
)
lm_printout_std()
(in
rosetta.numeric.nls._numeric_nls_
)
LOWER_TERMINUS
(in
rosetta
)
last_proposal_density_ratio()
(in
RigidBodyPerturbNoCenterMover
)
lm_status_struct
(in
rosetta.numeric.nls._numeric_nls_
)
LOWER_TERMINUS
(in
rosetta.core.chemical
)
last_proposal_density_ratio()
(in
RigidBodyPerturbRandomJumpMover
)
lm_status_structAP
(in
rosetta.numeric.nls._numeric_nls_
)
LOWER_TERMINUS
(in
rosetta.core.chemical._core_chemical_
)
last_proposal_density_ratio()
(in
RigidBodyRandomizeMover
)
lm_status_structCAP
(in
rosetta.numeric.nls._numeric_nls_
)
LOWER_TERMINUS
(in
ResidueProperty
)
last_proposal_density_ratio()
(in
RigidBodySpinMover
)
LnExpression
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
LOWER_TERMINUS_VARIANT
(in
rosetta
)
last_proposal_density_ratio()
(in
RigidBodyTransMover
)
LnExpressionAP
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
LOWER_TERMINUS_VARIANT
(in
rosetta.core.chemical
)
last_proposal_density_ratio()
(in
RollMover
)
LnExpressionCAP
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
LOWER_TERMINUS_VARIANT
(in
rosetta.core.chemical._core_chemical_
)
last_proposal_density_ratio()
(in
RotateJumpAxisMover
)
load()
(in
RotData
)
LOWER_TERMINUS_VARIANT
(in
VariantType
)
last_proposal_density_ratio()
(in
UniformRigidBodyCM
)
load_bin_params()
(in
BinTransitionCalculator
)
lower_threshold()
(in
InterfacePackingFilter
)
last_proposal_density_ratio()
(in
UniformRigidBodyMover
)
load_bin_params()
(in
GeneralizedKICfilter
)
lower_threshold()
(in
DesignableResiduesFilter
)
last_proposal_density_ratio()
(in
UniformSphereTransMover
)
load_bin_params()
(in
GeneralizedKICperturber
)
lower_value()
(in
PerturbBundleOptions
)
last_proposal_density_ratio()
(in
WholeBodyRotationMover
)
load_binary()
(in
APCluster
)
LOWERTERM_TRUNC
(in
rosetta
)
last_proposal_density_ratio()
(in
WholeBodyTranslationMover
)
load_build_position_data()
(in
rosetta.protocols.motifs._protocols_motifs_
)
LOWERTERM_TRUNC
(in
rosetta.core.chemical
)
last_proposal_density_ratio()
(in
AdditionalOutputWrapper
)
load_checkpoint()
(in
rosetta.protocols.dna._protocols_dna_
)
LOWERTERM_TRUNC
(in
rosetta.core.chemical._core_chemical_
)
last_proposal_density_ratio()
(in
MultipleOutputWrapper
)
load_component_weights()
(in
rosetta.protocols.optimize_weights._protocols_optimize_weights_
)
LOWERTERM_TRUNC
(in
ResidueProperty
)
last_proposal_density_ratio()
(in
MultiplePoseMover
)
load_conformation()
(in
ProteinResidueConformationFeatures
)
LOWERTERM_TRUNC_VARIANT
(in
rosetta
)
last_proposal_density_ratio()
(in
ParsedProtocol
)
load_conformation()
(in
ResidueConformationFeatures
)
LOWERTERM_TRUNC_VARIANT
(in
rosetta.core.chemical
)
last_proposal_density_ratio()
(in
SavePoseMover
)
load_data()
(in
DataLoader
)
LOWERTERM_TRUNC_VARIANT
(in
rosetta.core.chemical._core_chemical_
)
last_proposal_density_ratio()
(in
RotamerRecoveryMover
)
load_data()
(in
FragSetLoader
)
LOWERTERM_TRUNC_VARIANT
(in
VariantType
)
last_proposal_density_ratio()
(in
CAcstGenerator
)
load_data()
(in
MonteCarloLoader
)
lowest_delta_torsion_selector
(in
rosetta.protocols.generalized_kinematic_closure.selector._protocols_generalized_kinematic_closure_selector_
)
last_proposal_density_ratio()
(in
CloseFold
)
load_data()
(in
ResidueSelectorLoader
)
lowest_delta_torsion_selector
(in
selector_type
)
last_proposal_density_ratio()
(in
CoordinateCst
)
load_data()
(in
ScoreFunctionLoader
)
lowest_delta_torsion_selector
(in
rosetta.protocols.generalized_kinematic_closure.selector
)
last_proposal_density_ratio()
(in
DefineMovableLoops
)
load_data()
(in
TaskOperationLoader
)
lowest_energy_selector
(in
rosetta.protocols.generalized_kinematic_closure.selector._protocols_generalized_kinematic_closure_selector_
)
last_proposal_density_ratio()
(in
GrowPeptides
)
load_data()
(in
InterfaceBuilderLoader
)
lowest_energy_selector
(in
selector_type
)
last_proposal_density_ratio()
(in
SeedFoldTree
)
load_data()
(in
LigandAreaLoader
)
lowest_energy_selector
(in
rosetta.protocols.generalized_kinematic_closure.selector
)
last_proposal_density_ratio()
(in
SeedSetupMover
)
load_data()
(in
MoveMapBuilderLoader
)
lowest_rmsd_selector
(in
rosetta.protocols.generalized_kinematic_closure.selector._protocols_generalized_kinematic_closure_selector_
)
last_proposal_density_ratio()
(in
SegmentHybridizer
)
load_data()
(in
LoopsDefinerLoader
)
lowest_rmsd_selector
(in
selector_type
)
last_proposal_density_ratio()
(in
SwapSegment
)
load_db()
(in
LoopHashLibrary
)
lowest_rmsd_selector
(in
rosetta.protocols.generalized_kinematic_closure.selector
)
last_proposal_density_ratio()
(in
EvaluatedTrialMover
)
load_decoys()
(in
ArchiveBase
)
lowest_score()
(in
DualMonteCarlo
)
last_proposal_density_ratio()
(in
AddCavitiesMover
)
load_dna_design_defs_from_file()
(in
rosetta.protocols.dna._protocols_dna_
)
lowest_score()
(in
MonteCarlo
)
last_proposal_density_ratio()
(in
AddChainMover
)
load_dna_design_defs_from_options()
(in
rosetta.protocols.dna._protocols_dna_
)
lowest_score()
(in
GenericMonteCarloMover
)
last_proposal_density_ratio()
(in
AddConstraintsToCurrentConformationMover
)
load_dna_design_defs_from_strings()
(in
rosetta.protocols.dna._protocols_dna_
)
lowest_score_pose()
(in
DualMonteCarlo
)
last_proposal_density_ratio()
(in
AddJobPairData
)
load_fastsax_spectrum()
(in
rosetta.core.scoring.saxs._core_scoring_saxs_
)
lowest_score_pose()
(in
MonteCarlo
)
last_proposal_density_ratio()
(in
AlignChainMover
)
load_ff()
(in
FormFactorManager
)
lowest_score_pose()
(in
GenericMonteCarloMover
)
last_proposal_density_ratio()
(in
BBConRotMover
)
load_ff_from_db()
(in
FormFactorManager
)
lowest_score_pose()
(in
RationalMonteCarlo
)
last_proposal_density_ratio()
(in
BBG8T3AMover
)
load_filter_bin_params()
(in
GeneralizedKIC
)
lowest_scores()
(in
GenericMonteCarloMover
)
last_proposal_density_ratio()
(in
BBGaussianMover
)
load_form_factors()
(in
rosetta.core.scoring.saxs._core_scoring_saxs_
)
lowres_reference_energy()
(in
DockingEnsemble
)
last_proposal_density_ratio()
(in
BackboneMover
)
load_fragment_lookup()
(in
StructureStoreManager
)
lowval()
(in
AtomGeometrySecMatchRPE
)
last_proposal_density_ratio()
(in
BoltzmannRotamerMover
)
LOAD_HIERARCHY
(in
rosetta.basic
)
lr()
(in
PseudoBond
)
last_proposal_density_ratio()
(in
ChainSplitMover
)
LOAD_HIERARCHY
(in
rosetta.basic._basic_
)
LR_AtomData
(in
rosetta.core.scoring.packstat._core_scoring_packstat_
)
last_proposal_density_ratio()
(in
ChangeAndResetFoldTreeMover
)
LOAD_HIERARCHY
(in
ProfTag
)
LR_AtomDataAP
(in
rosetta.core.scoring.packstat._core_scoring_packstat_
)
last_proposal_density_ratio()
(in
ClearConstraintsMover
)
load_into_pose()
(in
AntibodyFeatures
)
LR_AtomDataCAP
(in
rosetta.core.scoring.packstat._core_scoring_packstat_
)
last_proposal_density_ratio()
(in
CombinePoseMover
)
load_into_pose()
(in
CDRClusterFeatures
)
lr_conn_id()
(in
PseudoBond
)
last_proposal_density_ratio()
(in
ConsensusDesignMover
)
load_into_pose()
(in
AtomAtomPairFeatures
)
LR_MP_AtomData
(in
rosetta.core.scoring.packstat._core_scoring_packstat_
)
last_proposal_density_ratio()
(in
ConstrainToIdealMover
)
load_into_pose()
(in
AtomInResidueAtomInResiduePairFeatures
)
LR_MP_AtomDataAP
(in
rosetta.core.scoring.packstat._core_scoring_packstat_
)
last_proposal_density_ratio()
(in
ConstraintSetMover
)
load_into_pose()
(in
AtomTypesFeatures
)
LR_MP_AtomDataCAP
(in
rosetta.core.scoring.packstat._core_scoring_packstat_
)
last_proposal_density_ratio()
(in
ContingentAcceptMover
)
load_into_pose()
(in
BetaTurnDetectionFeatures
)
lr_resconnid()
(in
PseudoBond
)
last_proposal_density_ratio()
(in
CopyDofMover
)
load_into_pose()
(in
ChargeChargeFeatures
)
LREnergyContainer
(in
rosetta.core.scoring._core_scoring_
)
last_proposal_density_ratio()
(in
CoupledMover
)
load_into_pose()
(in
DdGFeatures
)
LREnergyContainerAP
(in
rosetta.core.scoring._core_scoring_
)
last_proposal_density_ratio()
(in
CutChainMover
)
load_into_pose()
(in
FeaturesReporter
)
LREnergyContainerCAP
(in
rosetta.core.scoring._core_scoring_
)
last_proposal_density_ratio()
(in
CyclizationMover
)
load_into_pose()
(in
GeometricSolvationFeatures
)
LRmsdFilter
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
last_proposal_density_ratio()
(in
DME_FilterMover
)
load_into_pose()
(in
HBondFeatures
)
LRmsdFilterAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
last_proposal_density_ratio()
(in
DeleteChainsMover
)
load_into_pose()
(in
HBondParameterFeatures
)
LRmsdFilterCAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
last_proposal_density_ratio()
(in
DesignRepackMover
)
load_into_pose()
(in
HelixCapFeatures
)
LRmsdFilterCreator
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
last_proposal_density_ratio()
(in
DisulfideInsertionMover
)
load_into_pose()
(in
InterfaceFeatures
)
LRmsdFilterCreatorAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
last_proposal_density_ratio()
(in
DumpPdb
)
load_into_pose()
(in
JobDataFeatures
)
LRmsdFilterCreatorCAP
(in
rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
)
last_proposal_density_ratio()
(in
EnergyCutRotamerTrialsMinMover
)
load_into_pose()
(in
LoopAnchorFeatures
)
lshift128()
(in
rosetta.numeric.random._numeric_random_
)
last_proposal_density_ratio()
(in
EnergyCutRotamerTrialsMover
)
load_into_pose()
(in
OrbitalsFeatures
)
LSMSearchPattern
(in
rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_
)
last_proposal_density_ratio()
(in
ExtendedPoseMover
)
load_into_pose()
(in
PairFeatures
)
LSMSearchPatternAP
(in
rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_
)
last_proposal_density_ratio()
(in
FavorSequenceProfile
)
load_into_pose()
(in
PdbDataFeatures
)
LSMSearchPatternCAP
(in
rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_
)
last_proposal_density_ratio()
(in
FavorSymmetricSequence
)
load_into_pose()
(in
PoseCommentsFeatures
)
lt_dih()
(in
ResidueVicinityInfo
)
last_proposal_density_ratio()
(in
FindConsensusSequence
)
load_into_pose()
(in
PoseConformationFeatures
)
lt_dih()
(in
ResInteractions
)
last_proposal_density_ratio()
(in
ForceDisulfidesMover
)
load_into_pose()
(in
ProteinBackboneAtomAtomPairFeatures
)
LT_Expression
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
last_proposal_density_ratio()
(in
GenericMonteCarloMover
)
load_into_pose()
(in
ProteinBackboneTorsionAngleFeatures
)
LT_ExpressionAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
last_proposal_density_ratio()
(in
GreenPacker
)
load_into_pose()
(in
ProteinBondGeometryFeatures
)
LT_ExpressionCAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
last_proposal_density_ratio()
(in
LoadPDBMover
)
load_into_pose()
(in
ProteinRMSDFeatures
)
LTE_Expression
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
last_proposal_density_ratio()
(in
LoadUnboundRotMover
)
load_into_pose()
(in
ProteinRMSDNoSuperpositionFeatures
)
LTE_ExpressionAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
last_proposal_density_ratio()
(in
MSDMover
)
load_into_pose()
(in
ProteinResidueConformationFeatures
)
LTE_ExpressionCAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
last_proposal_density_ratio()
(in
MakePolyXMover
)
load_into_pose()
(in
RadiusOfGyrationFeatures
)
lua
(in
rosetta.utility
)
last_proposal_density_ratio()
(in
MembraneTopology
)
load_into_pose()
(in
ResidueBurialFeatures
)
LuaIterator
(in
rosetta.utility.lua._utility_lua_
)
last_proposal_density_ratio()
(in
MinMover
)
load_into_pose()
(in
ResidueConformationFeatures
)
LuaIteratorAP
(in
rosetta.utility.lua._utility_lua_
)
last_proposal_density_ratio()
(in
MinPackMover
)
load_into_pose()
(in
ResidueFeatures
)
LuaIteratorCAP
(in
rosetta.utility.lua._utility_lua_
)
last_proposal_density_ratio()
(in
MissingDensityToJumpMover
)
load_into_pose()
(in
ResidueGridScoresFeatures
)
LuaObject
(in
rosetta.utility.lua._utility_lua_
)
last_proposal_density_ratio()
(in
ModifyVariantTypeMover
)
load_into_pose()
(in
ResidueScoresFeatures
)
LuaObjectAP
(in
rosetta.utility.lua._utility_lua_
)
last_proposal_density_ratio()
(in
MonteCarloRecover
)
load_into_pose()
(in
ResidueSecondaryStructureFeatures
)
LuaObjectCAP
(in
rosetta.utility.lua._utility_lua_
)
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