Package rosetta :: Package protocols :: Package fldsgn :: Package potentials :: Package sspot :: Module _protocols_fldsgn_potentials_sspot_
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Module _protocols_fldsgn_potentials_sspot_

Classes [hide private]
  HSPairPotential
secondary structure scoring cut from classic rosetta structure.h/structure.cc
  HSPairPotentialAP
  HSPairPotentialCAP
  NatbiasHelicesSheetPotential
protocols/fldsgn/potentials/sspot/NatbiasHelicesSheetPotential.hh:40
  NatbiasHelicesSheetPotentialAP
  NatbiasHelicesSheetPotentialCAP
  NatbiasHelixPairPotential
protocols/fldsgn/potentials/sspot/NatbiasHelixPairPotential.hh:35
  NatbiasHelixPairPotentialAP
  NatbiasHelixPairPotentialCAP
  NatbiasSecondaryStructureEnergy
NatbiasSecondaryStructureEnergy
  NatbiasSecondaryStructureEnergyAP
  NatbiasSecondaryStructureEnergyCAP
  NatbiasSecondaryStructureEnergyCreator
protocols/fldsgn/potentials/sspot/NatbiasSecondaryStructureEnergyCreator.hh:29
  NatbiasSecondaryStructureEnergyCreatorAP
  NatbiasSecondaryStructureEnergyCreatorCAP
  NatbiasStrandPairPotential
secondary structure scoring cut from classic rosetta structure.h/structure.cc
  NatbiasStrandPairPotentialAP
  NatbiasStrandPairPotentialCAP
  SSPairPotential
secondary structure scoring cut from classic rosetta structure.h/structure.cc
  SSPairPotentialAP
  SSPairPotentialCAP
  __CPP_NatbiasSecondaryStructureEnergyCreator__
  __CPP_NatbiasSecondaryStructureEnergy__
Functions [hide private]
 
get_foldtree_seqsep(...)
get_foldtree_seqsep( (Pose)pose, (int)pos1, (int)pos2 [, (int)gap_size=10]) -> int : identifies the sequence separation along the fold tree add the gap_size (default 10 ) into seqsep when there is chain break between pos1 and pos2
 
spherical(...)
spherical( (xyzVector_Real)a2, (xyzVector_Real)a4, (float)phi, (float)theta, (xyzVector_Real)cen1, (xyzVector_Real)cen2, (xyzVector_Real)v21) -> None : protocols/fldsgn/potentials/sspot/util.hh:43
Variables [hide private]
  __package__ = None
Function Details [hide private]

get_foldtree_seqsep(...)

 

get_foldtree_seqsep( (Pose)pose, (int)pos1, (int)pos2 [, (int)gap_size=10]) -> int :
    identifies the sequence separation along the fold tree
    add the gap_size (default 10 ) into seqsep when there is chain break between pos1 and pos2
    

    C++ signature :
        unsigned long get_foldtree_seqsep(core::pose::Pose,unsigned long,unsigned long [,unsigned long=10])

spherical(...)

 

spherical( (xyzVector_Real)a2, (xyzVector_Real)a4, (float)phi, (float)theta, (xyzVector_Real)cen1, (xyzVector_Real)cen2, (xyzVector_Real)v21) -> None :
    protocols/fldsgn/potentials/sspot/util.hh:43

    C++ signature :
        void spherical(numeric::xyzVector<double>,numeric::xyzVector<double>,double {lvalue},double {lvalue},numeric::xyzVector<double>,numeric::xyzVector<double>,numeric::xyzVector<double>)