Module _protocols_toolbox_pose_manipulation_

add_chainbreaks_according_to_jumps( (Pose)pose) -> None :
    Florian Richter( floric@u.washington.edu), nov 11
    adds chainbreak residue types depending on fold tree jumps
    

    C++ signature :
        void add_chainbreaks_according_to_jumps(core::pose::Pose {lvalue})

construct_poly_XXX_pose( (str)aa, (Pose)pose, (vector1_Size)positions, (bool)keep_pro, (bool)keep_gly, (bool)keep_disulfide_cys) -> None :
    Nobuyasu Koga ( nobuyasu@uw.edu ), Oct 09
    puts in XXX residues at the positions specified in the 'positions' input array
    

    C++ signature :
        void construct_poly_XXX_pose(std::string,core::pose::Pose {lvalue},utility::vector1<unsigned long, std::allocator<unsigned long> >,bool,bool,bool)

construct_poly_ala_pose( (Pose)pose, (vector1_Size)positions, (bool)keep_pro, (bool)keep_gly, (bool)keep_disulfide_cys) -> None :
    Florian Richter( floric@u.washington.edu) , june 08
    puts in ala residues at the positions specified in the 'positions' input array
    

    C++ signature :
        void construct_poly_ala_pose(core::pose::Pose {lvalue},utility::vector1<unsigned long, std::allocator<unsigned long> >,bool,bool,bool)

construct_poly_uniq_restype_pose( (Pose)pose, (vector1_Size)positions, (ResidueType)restype, (bool)keep_pro, (bool)keep_gly, (bool)keep_disulfide_cys) -> None :
    Possu Huang ( possu@uw.edu)
    allows construction of a polymer of any residue type
    

    C++ signature :
        void construct_poly_uniq_restype_pose(core::pose::Pose {lvalue},utility::vector1<unsigned long, std::allocator<unsigned long> >,core::chemical::ResidueType,bool,bool,bool)

remove_chainbreaks_according_to_jumps( (Pose)pose) -> None :
    Florian Richter( floric@u.washington.edu), nov 11
    removes chainbreak residue types depending on fold tree jumps
    

    C++ signature :
        void remove_chainbreaks_according_to_jumps(core::pose::Pose {lvalue})

remove_non_protein_residues( (Pose)pose) -> None :
    Florian Richter( floric@u.washington.edu) , aug 08
    deletes all nonprotein residues from a pose
    

    C++ signature :
        void remove_non_protein_residues(core::pose::Pose {lvalue})

superimpose_pose_on_subset_CA( (Pose)pose, (Pose)ref_pose, (vector1_Size)positions [, (int)offset=0]) -> float :
    Florian Richter( floric@u.washington.edu) , sep 08
    superimposes one pose onto the other at the positions specified and
    with the offset specified
    

    C++ signature :
        double superimpose_pose_on_subset_CA(core::pose::Pose {lvalue},core::pose::Pose,utility::vector1<unsigned long, std::allocator<unsigned long> > [,int=0])