Package rosetta :: Package protocols :: Package protein_interface_design :: Package movers :: Module _protocols_protein_interface_design_movers_
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Module _protocols_protein_interface_design_movers_

Classes [hide private]
  AddChainBreak
a mover that sets a chainbreak in a specified position
  AddChainBreakAP
  AddChainBreakCAP
  AddChainBreakCreator
protocols/protein_interface_design/movers/AddChainBreakCreator.hh:24
  AddChainBreakCreatorAP
  AddChainBreakCreatorCAP
  AddSidechainConstraintsToHotspots
protocols/protein_interface_design/movers/AddSidechainConstraintsToHotspots.hh:32
  AddSidechainConstraintsToHotspotsAP
  AddSidechainConstraintsToHotspotsCAP
  AddSidechainConstraintsToHotspotsCreator
protocols/protein_interface_design/movers/AddSidechainConstraintsToHotspotsCreator.hh:25
  AddSidechainConstraintsToHotspotsCreatorAP
  AddSidechainConstraintsToHotspotsCreatorCAP
  BackrubDDMover
protocols/protein_interface_design/movers/BackrubDDMover.hh:35
  BackrubDDMoverAP
  BackrubDDMoverCAP
  BackrubDDMoverCreator
protocols/protein_interface_design/movers/BackrubDDMoverCreator.hh:25
  BackrubDDMoverCreatorAP
  BackrubDDMoverCreatorCAP
  BestHotspotCstMover
remove all HotspotCst's from the pose except the best X
  BestHotspotCstMoverAP
  BestHotspotCstMoverCAP
  BestHotspotCstMoverCreator
protocols/protein_interface_design/movers/BestHotspotCstMoverCreator.hh:25
  BestHotspotCstMoverCreatorAP
  BestHotspotCstMoverCreatorCAP
  BuildAlaPose
designs alanine residues in place of the residue identities at the interface.
  BuildAlaPoseAP
  BuildAlaPoseCAP
  BuildAlaPoseCreator
protocols/protein_interface_design/movers/BuildAlaPoseCreator.hh:25
  BuildAlaPoseCreatorAP
  BuildAlaPoseCreatorCAP
  DesignMinimizeHbonds
used to design a protein to hbond preferentially to a set of target residues on the partner.
  DesignMinimizeHbondsAP
  DesignMinimizeHbondsCAP
  DesignMinimizeHbondsCreator
protocols/protein_interface_design/movers/DesignMinimizeHbondsCreator.hh:25
  DesignMinimizeHbondsCreatorAP
  DesignMinimizeHbondsCreatorCAP
  DisulfideMover
protocols/protein_interface_design/movers/DisulfideMover.hh:48
  DisulfideMoverAP
  DisulfideMoverCAP
  DisulfideMoverCreator
protocols/protein_interface_design/movers/DisulfideMoverCreator.hh:25
  DisulfideMoverCreatorAP
  DisulfideMoverCreatorCAP
  DockAndRetrieveSidechains
protocols/protein_interface_design/movers/DockAndRetrieveSidechains.hh:33
  DockAndRetrieveSidechainsAP
  DockAndRetrieveSidechainsCAP
  DockAndRetrieveSidechainsCreator
protocols/protein_interface_design/movers/DockAndRetrieveSidechainsCreator.hh:25
  DockAndRetrieveSidechainsCreatorAP
  DockAndRetrieveSidechainsCreatorCAP
  DockWithHotspotMover
A mover to mutate a single residue
  DockWithHotspotMoverAP
  DockWithHotspotMoverCAP
  DockWithHotspotMoverCreator
protocols/protein_interface_design/movers/DockWithHotspotMoverCreator.hh:23
  DockWithHotspotMoverCreatorAP
  DockWithHotspotMoverCreatorCAP
  FavorNativeResiduePreCycle
protocols/protein_interface_design/movers/FavorNativeResiduePreCycle.hh:32
  FavorNativeResiduePreCycleAP
  FavorNativeResiduePreCycleCAP
  FavorNativeResiduePreCycleCreator
protocols/protein_interface_design/movers/FavorNativeResiduePreCycleCreator.hh:25
  FavorNativeResiduePreCycleCreatorAP
  FavorNativeResiduePreCycleCreatorCAP
  FavorNonNativeResiduePreCycle
protocols/protein_interface_design/movers/FavorNonNativeResiduePreCycle.hh:32
  FavorNonNativeResiduePreCycleAP
  FavorNonNativeResiduePreCycleCAP
  FavorNonNativeResiduePreCycleCreator
protocols/protein_interface_design/movers/FavorNonNativeResiduePreCycleCreator.hh:25
  FavorNonNativeResiduePreCycleCreatorAP
  FavorNonNativeResiduePreCycleCreatorCAP
  HotspotDisjointedFoldTreeMover
protocols/protein_interface_design/movers/HotspotDisjointedFoldTreeMover.hh:34
  HotspotDisjointedFoldTreeMoverAP
  HotspotDisjointedFoldTreeMoverCAP
  HotspotDisjointedFoldTreeMoverCreator
protocols/protein_interface_design/movers/HotspotDisjointedFoldTreeMoverCreator.hh:25
  HotspotDisjointedFoldTreeMoverCreatorAP
  HotspotDisjointedFoldTreeMoverCreatorCAP
  HotspotHasherMover
protocols/protein_interface_design/movers/HotspotHasherMover.hh:31
  HotspotHasherMoverAP
  HotspotHasherMoverCAP
  HotspotHasherMoverCreator
protocols/protein_interface_design/movers/HotspotHasherMoverCreator.hh:25
  HotspotHasherMoverCreatorAP
  HotspotHasherMoverCreatorCAP
  InterfaceRecapitulationMover
a pure virtual base class for movers which redesign and repack the interface
  InterfaceRecapitulationMoverAP
  InterfaceRecapitulationMoverCAP
  InterfaceRecapitulationMoverCreator
protocols/protein_interface_design/movers/InterfaceRecapitulationMoverCreator.hh:25
  InterfaceRecapitulationMoverCreatorAP
  InterfaceRecapitulationMoverCreatorCAP
  LoopFinder
protocols/protein_interface_design/movers/LoopFinder.hh:40
  LoopFinderAP
  LoopFinderCAP
  LoopFinderCreator
protocols/protein_interface_design/movers/LoopFinderCreator.hh:25
  LoopFinderCreatorAP
  LoopFinderCreatorCAP
  LoopLengthChange
designs alanine residues in place of the residue identities at the interface.
  LoopLengthChangeAP
  LoopLengthChangeCAP
  LoopLengthChangeCreator
protocols/protein_interface_design/movers/LoopLengthChangeCreator.hh:25
  LoopLengthChangeCreatorAP
  LoopLengthChangeCreatorCAP
  LoopMoverFromCommandLine
protocols/protein_interface_design/movers/LoopMoverFromCommandLine.hh:38
  LoopMoverFromCommandLineAP
  LoopMoverFromCommandLineCAP
  LoopMoverFromCommandLineCreator
protocols/protein_interface_design/movers/LoopMoverFromCommandLineCreator.hh:24
  LoopMoverFromCommandLineCreatorAP
  LoopMoverFromCommandLineCreatorCAP
  LoopOver
essentially the same as the WhileMover but allows parsing and cloning.
  LoopOverAP
  LoopOverCAP
  LoopOverCreator
protocols/protein_interface_design/movers/LoopOverCreator.hh:25
  LoopOverCreatorAP
  LoopOverCreatorCAP
  LoopRemodel
protocols/protein_interface_design/movers/LoopRemodel.hh:39
  LoopRemodelAP
  LoopRemodelCAP
  LoopRemodelCreator
protocols/protein_interface_design/movers/LoopRemodelCreator.hh:25
  LoopRemodelCreatorAP
  LoopRemodelCreatorCAP
  MapHotspot
protocols/protein_interface_design/movers/MapHotspot.hh:34
  MapHotspotAP
  MapHotspotCAP
  MapHotspotCreator
protocols/protein_interface_design/movers/MapHotspotCreator.hh:25
  MapHotspotCreatorAP
  MapHotspotCreatorCAP
  PatchdockTransform
wrapper around protocols::protein_interface_design::PatchdockReader class.
  PatchdockTransformAP
  PatchdockTransformCAP
  PatchdockTransformCreator
protocols/protein_interface_design/movers/PatchdockTransformCreator.hh:25
  PatchdockTransformCreatorAP
  PatchdockTransformCreatorCAP
  PeptideStapleDesignMover
Introduces a peptide staple (ala G.
  PeptideStapleDesignMoverAP
  PeptideStapleDesignMoverCAP
  PeptideStapleDesignMoverCreator
protocols/protein_interface_design/movers/PeptideStapleDesignMoverCreator.hh:25
  PeptideStapleDesignMoverCreatorAP
  PeptideStapleDesignMoverCreatorCAP
  PlaceOnLoop
protocols/protein_interface_design/movers/PlaceOnLoop.hh:41
  PlaceOnLoopAP
  PlaceOnLoopCAP
  PlaceOnLoopCreator
protocols/protein_interface_design/movers/PlaceOnLoopCreator.hh:25
  PlaceOnLoopCreatorAP
  PlaceOnLoopCreatorCAP
  PlaceSimultaneouslyMover
choose a stub based on mc sampling, and place it on the pose.
  PlaceSimultaneouslyMoverAP
  PlaceSimultaneouslyMoverCAP
  PlaceSimultaneouslyMoverCreator
protocols/protein_interface_design/movers/PlaceSimultaneouslyMoverCreator.hh:25
  PlaceSimultaneouslyMoverCreatorAP
  PlaceSimultaneouslyMoverCreatorCAP
  PlaceStubMover
choose a stub based on mc sampling, and place it on the pose.
  PlaceStubMoverAP
  PlaceStubMoverCAP
  PlaceStubMoverCreator
protocols/protein_interface_design/movers/PlaceStubMoverCreator.hh:25
  PlaceStubMoverCreatorAP
  PlaceStubMoverCreatorCAP
  PlacementAuctionMover
protocols/protein_interface_design/movers/PlacementAuctionMover.hh:42
  PlacementAuctionMoverAP
  PlacementAuctionMoverCAP
  PlacementAuctionMoverCreator
protocols/protein_interface_design/movers/PlacementAuctionMoverCreator.hh:25
  PlacementAuctionMoverCreatorAP
  PlacementAuctionMoverCreatorCAP
  PlacementMinimizationMover
a simple rb-minimization in a bb-stub constraint biased forcefield.
  PlacementMinimizationMoverAP
  PlacementMinimizationMoverCAP
  PlacementMinimizationMoverCreator
protocols/protein_interface_design/movers/PlacementMinimizationMoverCreator.hh:25
  PlacementMinimizationMoverCreatorAP
  PlacementMinimizationMoverCreatorCAP
  PrepackMover
protocols/protein_interface_design/movers/PrepackMover.hh:34
  PrepackMoverAP
  PrepackMoverCAP
  PrepackMoverCreator
protocols/protein_interface_design/movers/PrepackMoverCreator.hh:25
  PrepackMoverCreatorAP
  PrepackMoverCreatorCAP
  ProteinInterfaceMultiStateDesignMover
wraps protein-interface specific considerations around the general multistate design / genetic algorithm framework
  ProteinInterfaceMultiStateDesignMoverAP
  ProteinInterfaceMultiStateDesignMoverCAP
  ProteinInterfaceMultiStateDesignMoverCreator
protocols/protein_interface_design/movers/ProteinInterfaceMultiStateDesignMoverCreator.hh:25
  ProteinInterfaceMultiStateDesignMoverCreatorAP
  ProteinInterfaceMultiStateDesignMoverCreatorCAP
  RandomMutation
designs alanine residues in place of the residue identities at the interface.
  RandomMutationAP
  RandomMutationCAP
  RandomMutationCreator
protocols/protein_interface_design/movers/RandomMutationCreator.hh:25
  RandomMutationCreatorAP
  RandomMutationCreatorCAP
  RepackMinimize
One round of design/repacking followed by interface sc/bb and rigid-body minimization
  RepackMinimizeAP
  RepackMinimizeCAP
  RepackMinimizeCreator
protocols/protein_interface_design/movers/RepackMinimizeCreator.hh:25
  RepackMinimizeCreatorAP
  RepackMinimizeCreatorCAP
  SaveAndRetrieveSidechains
saves a pose and reapplies its sequence and rotamers at a later stage.
  SaveAndRetrieveSidechainsAP
  SaveAndRetrieveSidechainsCAP
  SaveAndRetrieveSidechainsCreator
protocols/protein_interface_design/movers/SaveAndRetrieveSidechainsCreator.hh:25
  SaveAndRetrieveSidechainsCreatorAP
  SaveAndRetrieveSidechainsCreatorCAP
  SetAtomTree
a mover that sets a user-defined atom tree
  SetAtomTreeAP
  SetAtomTreeCAP
  SetAtomTreeCreator
protocols/protein_interface_design/movers/SetAtomTreeCreator.hh:25
  SetAtomTreeCreatorAP
  SetAtomTreeCreatorCAP
  SetTemperatureFactor
Set the temperature (b-)factor column in the PDB according to som filter's value.
  SetTemperatureFactorAP
  SetTemperatureFactorCAP
  SetTemperatureFactorCreator
protocols/protein_interface_design/movers/SetTemperatureFactorCreator.hh:25
  SetTemperatureFactorCreatorAP
  SetTemperatureFactorCreatorCAP
  SetupHotspotConstraintsLoopsMover
protocols/protein_interface_design/movers/SetupHotspotConstraintsLoopsMover.hh:33
  SetupHotspotConstraintsLoopsMoverAP
  SetupHotspotConstraintsLoopsMoverCAP
  SetupHotspotConstraintsLoopsMoverCreator
protocols/protein_interface_design/movers/SetupHotspotConstraintsLoopsMoverCreator.hh:25
  SetupHotspotConstraintsLoopsMoverCreatorAP
  SetupHotspotConstraintsLoopsMoverCreatorCAP
  SetupHotspotConstraintsMover
protocols/protein_interface_design/movers/SetupHotspotConstraintsMover.hh:31
  SetupHotspotConstraintsMoverAP
  SetupHotspotConstraintsMoverCAP
  SetupHotspotConstraintsMoverCreator
protocols/protein_interface_design/movers/SetupHotspotConstraintsMoverCreator.hh:25
  SetupHotspotConstraintsMoverCreatorAP
  SetupHotspotConstraintsMoverCreatorCAP
  ShoveResidueMover
protocols/protein_interface_design/movers/ShoveResidueMover.hh:30
  ShoveResidueMoverAP
  ShoveResidueMoverCAP
  ShoveResidueMoverCreator
protocols/protein_interface_design/movers/ShoveResidueMoverCreator.hh:25
  ShoveResidueMoverCreatorAP
  ShoveResidueMoverCreatorCAP
  SingletonBase_T_core_chemical_ChemicalManager_T
SingletonBase is meant to serve as a base class for singleton classes in Rosetta handling the initialization of the singleton in a thread-safe way.
  SingletonBase_T_core_chemical_ChemicalManager_TAP
  SingletonBase_T_core_chemical_ChemicalManager_TCAP
  SpinMover
protocols/protein_interface_design/movers/SpinMover.hh:30
  SpinMoverAP
  SpinMoverCAP
  SpinMoverCreator
protocols/protein_interface_design/movers/SpinMoverCreator.hh:25
  SpinMoverCreatorAP
  SpinMoverCreatorCAP
  SubroutineMover
protocols/protein_interface_design/movers/SubroutineMover.hh:33
  SubroutineMoverAP
  SubroutineMoverCAP
  SubroutineMoverCreator
protocols/protein_interface_design/movers/SubroutineMoverCreator.hh:25
  SubroutineMoverCreatorAP
  SubroutineMoverCreatorCAP
  TaskAwareCsts
applies csts (currently only coordinate csts) to every designable position in pose according to taskoperations
  TaskAwareCstsAP
  TaskAwareCstsCAP
  TaskAwareCstsCreator
protocols/protein_interface_design/movers/TaskAwareCstsCreator.hh:25
  TaskAwareCstsCreatorAP
  TaskAwareCstsCreatorCAP
  TopologyBrokerMover
designs alanine residues in place of the residue identities at the interface.
  TopologyBrokerMoverAP
  TopologyBrokerMoverCAP
  TopologyBrokerMoverCreator
protocols/protein_interface_design/movers/TopologyBrokerMoverCreator.hh:23
  TopologyBrokerMoverCreatorAP
  TopologyBrokerMoverCreatorCAP
  TryRotamers
protocols/protein_interface_design/movers/TryRotamers.hh:33
  TryRotamersAP
  TryRotamersCAP
  TryRotamersCreator
protocols/protein_interface_design/movers/TryRotamersCreator.hh:25
  TryRotamersCreatorAP
  TryRotamersCreatorCAP
  VLB
user interface for YAB's Variable Length Build.
  VLBAP
  VLBCAP
  VLBCreator
protocols/protein_interface_design/movers/VLBCreator.hh:25
  VLBCreatorAP
  VLBCreatorCAP
  __CPP_AddChainBreakCreator__
  __CPP_AddChainBreak__
  __CPP_AddSidechainConstraintsToHotspotsCreator__
  __CPP_AddSidechainConstraintsToHotspots__
  __CPP_BackrubDDMoverCreator__
  __CPP_BackrubDDMover__
  __CPP_BestHotspotCstMoverCreator__
  __CPP_BestHotspotCstMover__
  __CPP_BuildAlaPoseCreator__
  __CPP_BuildAlaPose__
  __CPP_DesignMinimizeHbondsCreator__
  __CPP_DesignMinimizeHbonds__
  __CPP_DisulfideMoverCreator__
  __CPP_DisulfideMover__
  __CPP_DockAndRetrieveSidechainsCreator__
  __CPP_DockAndRetrieveSidechains__
  __CPP_DockWithHotspotMoverCreator__
  __CPP_DockWithHotspotMover__
  __CPP_FavorNativeResiduePreCycleCreator__
  __CPP_FavorNativeResiduePreCycle__
  __CPP_FavorNonNativeResiduePreCycleCreator__
  __CPP_FavorNonNativeResiduePreCycle__
  __CPP_HotspotDisjointedFoldTreeMoverCreator__
  __CPP_HotspotDisjointedFoldTreeMover__
  __CPP_HotspotHasherMoverCreator__
  __CPP_HotspotHasherMover__
  __CPP_InterfaceRecapitulationMoverCreator__
  __CPP_InterfaceRecapitulationMover__
  __CPP_LoopFinderCreator__
  __CPP_LoopFinder__
  __CPP_LoopLengthChangeCreator__
  __CPP_LoopLengthChange__
  __CPP_LoopMoverFromCommandLineCreator__
  __CPP_LoopMoverFromCommandLine__
  __CPP_LoopOverCreator__
  __CPP_LoopOver__
  __CPP_LoopRemodelCreator__
  __CPP_LoopRemodel__
  __CPP_MapHotspotCreator__
  __CPP_MapHotspot__
  __CPP_PatchdockTransformCreator__
  __CPP_PatchdockTransform__
  __CPP_PeptideStapleDesignMoverCreator__
  __CPP_PeptideStapleDesignMover__
  __CPP_PlaceOnLoopCreator__
  __CPP_PlaceOnLoop__
  __CPP_PlaceSimultaneouslyMoverCreator__
  __CPP_PlaceSimultaneouslyMover__
  __CPP_PlaceStubMoverCreator__
  __CPP_PlaceStubMover__
  __CPP_PlacementAuctionMoverCreator__
  __CPP_PlacementAuctionMover__
  __CPP_PlacementMinimizationMoverCreator__
  __CPP_PlacementMinimizationMover__
  __CPP_PrepackMoverCreator__
  __CPP_PrepackMover__
  __CPP_ProteinInterfaceMultiStateDesignMoverCreator__
  __CPP_ProteinInterfaceMultiStateDesignMover__
  __CPP_RandomMutationCreator__
  __CPP_RandomMutation__
  __CPP_RepackMinimizeCreator__
  __CPP_RepackMinimize__
  __CPP_SaveAndRetrieveSidechainsCreator__
  __CPP_SaveAndRetrieveSidechains__
  __CPP_SetAtomTreeCreator__
  __CPP_SetAtomTree__
  __CPP_SetTemperatureFactorCreator__
  __CPP_SetTemperatureFactor__
  __CPP_SetupHotspotConstraintsLoopsMoverCreator__
  __CPP_SetupHotspotConstraintsLoopsMover__
  __CPP_SetupHotspotConstraintsMoverCreator__
  __CPP_SetupHotspotConstraintsMover__
  __CPP_ShoveResidueMoverCreator__
  __CPP_ShoveResidueMover__
  __CPP_SpinMoverCreator__
  __CPP_SpinMover__
  __CPP_SubroutineMoverCreator__
  __CPP_SubroutineMover__
  __CPP_TaskAwareCstsCreator__
  __CPP_TaskAwareCsts__
  __CPP_TopologyBrokerMoverCreator__
  __CPP_TopologyBrokerMover__
  __CPP_TryRotamersCreator__
  __CPP_TryRotamers__
  __CPP_VLBCreator__
  __CPP_VLB__
Functions [hide private]
 
add_coordinate_constraints(...)
add_coordinate_constraints( (Pose)pose, (Residue)source, (int)host_chain, (int)resnum, (float)coord_sdev, (__CPP_HarmonicFunc__)coord_cst_func) -> object : protocols/protein_interface_design/movers/PlaceUtils.hh:52
 
find_nearest_residue_to_coord(...)
find_nearest_residue_to_coord( (Pose)pose, (xyzVector_Real)coord, (int)host_chain) -> int : find the nearest residue to a coordinate
 
generate_taskfactory_and_add_task_awareness(...)
generate_taskfactory_and_add_task_awareness( (Tag)tag, (object)movers, (DataMap)data, (__CPP_TaskFactory__)task_factory) -> None : protocols/protein_interface_design/movers/PlaceUtils.hh:55
ScoreFunction :
make_stub_scorefxn()
protocols/protein_interface_design/movers/PlaceUtils.hh:67
 
nearest_atom_for_constraint(...)
nearest_atom_for_constraint( (Residue)residue) -> str : protocols/protein_interface_design/movers/PlaceUtils.hh:57
 
parse_stub_sets(...)
parse_stub_sets( (Tag)tag, (Pose)pose, (int)host_chain, (DataMap)data) -> object : a utility function for parsing stubset information from a tag
 
test_res_res_aln(...)
test_res_res_aln( (Residue)res1, (Residue)res2, (float)C_N_angle, (float)CB_CA_angle) -> bool : protocols/protein_interface_design/movers/PlaceUtils.hh:45
Variables [hide private]
  __package__ = None
Function Details [hide private]

add_coordinate_constraints(...)

 

add_coordinate_constraints( (Pose)pose, (Residue)source, (int)host_chain, (int)resnum, (float)coord_sdev, (__CPP_HarmonicFunc__)coord_cst_func) -> object :
    protocols/protein_interface_design/movers/PlaceUtils.hh:52

    C++ signature :
        utility::vector1<boost::shared_ptr<core::scoring::constraints::Constraint const>, std::allocator<boost::shared_ptr<core::scoring::constraints::Constraint const> > > add_coordinate_constraints(core::pose::Pose {lvalue},core::conformation::Residue,unsigned long,unsigned long,double,boost::shared_ptr<core::scoring::func::HarmonicFunc> {lvalue})

find_nearest_residue_to_coord(...)

 

find_nearest_residue_to_coord( (Pose)pose, (xyzVector_Real)coord, (int)host_chain) -> int :
    find the nearest residue to a coordinate
    

    C++ signature :
        unsigned long find_nearest_residue_to_coord(core::pose::Pose,numeric::xyzVector<double>,unsigned long)

generate_taskfactory_and_add_task_awareness(...)

 

generate_taskfactory_and_add_task_awareness( (Tag)tag, (object)movers, (DataMap)data, (__CPP_TaskFactory__)task_factory) -> None :
    protocols/protein_interface_design/movers/PlaceUtils.hh:55

    C++ signature :
        void generate_taskfactory_and_add_task_awareness(boost::shared_ptr<utility::tag::Tag const>,std::map<std::string const, boost::shared_ptr<protocols::moves::Mover>, std::less<std::string const>, std::allocator<std::pair<std::string const, boost::shared_ptr<protocols::moves::Mover> > > >,basic::datacache::DataMap {lvalue},boost::shared_ptr<core::pack::task::TaskFactory> {lvalue})

make_stub_scorefxn()

 
    protocols/protein_interface_design/movers/PlaceUtils.hh:67

    C++ signature :
        boost::shared_ptr<core::scoring::ScoreFunction> make_stub_scorefxn()

Returns: ScoreFunction :

nearest_atom_for_constraint(...)

 

nearest_atom_for_constraint( (Residue)residue) -> str :
    protocols/protein_interface_design/movers/PlaceUtils.hh:57

    C++ signature :
        std::string nearest_atom_for_constraint(core::conformation::Residue)

parse_stub_sets(...)

 

parse_stub_sets( (Tag)tag, (Pose)pose, (int)host_chain, (DataMap)data) -> object :
    a utility function for parsing stubset information from a tag
    

    C++ signature :
        utility::vector1<std::pair<boost::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::pair<boost::shared_ptr<protocols::hotspot_hashing::HotspotStub>, unsigned long> >, std::allocator<std::pair<boost::shared_ptr<protocols::hotspot_hashing::HotspotStubSet>, std::pair<boost::shared_ptr<protocols::hotspot_hashing::HotspotStub>, unsigned long> > > > parse_stub_sets(boost::shared_ptr<utility::tag::Tag const>,core::pose::Pose,unsigned long,basic::datacache::DataMap)

test_res_res_aln(...)

 

test_res_res_aln( (Residue)res1, (Residue)res2, (float)C_N_angle, (float)CB_CA_angle) -> bool :
    protocols/protein_interface_design/movers/PlaceUtils.hh:45

    C++ signature :
        bool test_res_res_aln(core::conformation::Residue,core::conformation::Residue,double {lvalue},double {lvalue})