Module _core_pose_symmetry_

extract_asymmetric_unit( (Pose)pose_in, (Pose)pose_out [, (bool)with_virtual_atoms=True]) -> None :
    extract the asu from a pose... unlike previous function symmetric clones are thrown out
    

    C++ signature :
        void extract_asymmetric_unit(core::pose::Pose,core::pose::Pose {lvalue} [,bool=True])

extract_asymmetric_unit_pdb_info( (Pose)pose, (PDBInfo)pdb_info_src, (PDBInfo)pdb_info_target) -> None :
    core/pose/symmetry/util.hh:106

    C++ signature :
        void extract_asymmetric_unit_pdb_info(core::pose::Pose,boost::shared_ptr<core::pose::PDBInfo const>,boost::shared_ptr<core::pose::PDBInfo>)

find_new_symmetric_jump_residues( (Pose)pose) -> None :
    core/pose/symmetry/util.hh:121

    C++ signature :
        void find_new_symmetric_jump_residues(core::pose::Pose {lvalue})

find_symmetric_basejump_anchor( (Pose)pose) -> int :
    core/pose/symmetry/util.hh:118

    C++ signature :
        int find_symmetric_basejump_anchor(core::pose::Pose {lvalue})

get_asymmetric_pose_copy_from_symmetric_pose( (Pose)pose) -> Pose :
    core/pose/symmetry/util.hh:90

    C++ signature :
        core::pose::Pose get_asymmetric_pose_copy_from_symmetric_pose(core::pose::Pose)

get_buildingblock_and_neighbor_subs( (Pose)pose_in, (vector1_Size)intra_subs) -> Pose :
    core/pose/symmetry/util.hh:148

    C++ signature :
        core::pose::Pose get_buildingblock_and_neighbor_subs(core::pose::Pose,utility::vector1<unsigned long, std::allocator<unsigned long> >)

get_component_lower_bound( (Pose)pose, (str)c) -> int :
    core/pose/symmetry/util.hh:254

    C++ signature :
        unsigned long get_component_lower_bound(core::pose::Pose,char)

get_component_of_residue( (Pose)pose, (int)ir) -> str :
    core/pose/symmetry/util.hh:256

    C++ signature :
        char get_component_of_residue(core::pose::Pose,unsigned long)

get_component_upper_bound( (Pose)pose, (str)c) -> int :
    core/pose/symmetry/util.hh:255

    C++ signature :
        unsigned long get_component_upper_bound(core::pose::Pose,char)

get_full_intracomponent_and_neighbor_resis( (Pose)pose, (str)sym_dof_name [, (float)contact_dist=10.0]) -> vector1_Size :
    core/pose/symmetry/util.hh:164

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > get_full_intracomponent_and_neighbor_resis(core::pose::Pose,std::string [,double=10.0])

get_full_intracomponent_and_neighbor_subpose( (Pose)pose, (str)sym_dof_name [, (float)contact_dist=10.0]) -> Pose :
    core/pose/symmetry/util.hh:161

    C++ signature :
        core::pose::Pose get_full_intracomponent_and_neighbor_subpose(core::pose::Pose,std::string [,double=10.0])

get_full_intracomponent_and_neighbor_subs( (Pose)pose, (str)sym_dof_name [, (float)contact_dist=10.0]) -> vector1_string :
    core/pose/symmetry/util.hh:158

    C++ signature :
        utility::vector1<std::string, std::allocator<std::string> > get_full_intracomponent_and_neighbor_subs(core::pose::Pose,std::string [,double=10.0])

get_full_intracomponent_neighbor_resis( (Pose)pose, (str)sym_dof_name [, (float)contact_dist=10.0]) -> vector1_Size :
    core/pose/symmetry/util.hh:179

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > get_full_intracomponent_neighbor_resis(core::pose::Pose,std::string [,double=10.0])

get_full_intracomponent_neighbor_subpose( (Pose)pose, (str)sym_dof_name [, (float)contact_dist=10.0]) -> Pose :
    core/pose/symmetry/util.hh:176

    C++ signature :
        core::pose::Pose get_full_intracomponent_neighbor_subpose(core::pose::Pose,std::string [,double=10.0])

get_full_intracomponent_neighbor_subs( (Pose)pose, (str)sym_dof_name [, (float)contact_dist=10.0]) -> vector1_string :
    core/pose/symmetry/util.hh:173

    C++ signature :
        utility::vector1<std::string, std::allocator<std::string> > get_full_intracomponent_neighbor_subs(core::pose::Pose,std::string [,double=10.0])

get_full_intracomponent_resis( (Pose)pose, (str)sym_dof_name) -> vector1_Size :
    core/pose/symmetry/util.hh:170

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > get_full_intracomponent_resis(core::pose::Pose,std::string)

get_full_intracomponent_subpose( (Pose)pose, (str)sym_dof_name) -> Pose :
    core/pose/symmetry/util.hh:167

    C++ signature :
        core::pose::Pose get_full_intracomponent_subpose(core::pose::Pose,std::string)

get_full_intracomponent_subs( (Pose)pose, (str)jname) -> vector1_string :
    core/pose/symmetry/util.hh:261

    C++ signature :
        utility::vector1<std::string, std::allocator<std::string> > get_full_intracomponent_subs(core::pose::Pose,std::string)

get_intracomponent_and_interneighbor_resis( (Pose)pose, (str)sym_dof_name [, (float)contact_dist=10.0]) -> vector1_Size :
    core/pose/symmetry/util.hh:227

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > get_intracomponent_and_interneighbor_resis(core::pose::Pose,std::string [,double=10.0])

get_intracomponent_and_interneighbor_subpose( (Pose)pose, (str)sym_dof_name [, (float)contact_dist=10.0]) -> Pose :
    core/pose/symmetry/util.hh:224

    C++ signature :
        core::pose::Pose get_intracomponent_and_interneighbor_subpose(core::pose::Pose,std::string [,double=10.0])

get_intracomponent_and_interneighbor_subs( (Pose)pose, (str)sym_dof_name [, (float)contact_dist=10.0]) -> vector1_string :
    core/pose/symmetry/util.hh:221

    C++ signature :
        utility::vector1<std::string, std::allocator<std::string> > get_intracomponent_and_interneighbor_subs(core::pose::Pose,std::string [,double=10.0])

get_intracomponent_and_intraneighbor_resis( (Pose)pose, (str)sym_dof_name [, (float)contact_dist=10.0]) -> vector1_Size :
    core/pose/symmetry/util.hh:218

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > get_intracomponent_and_intraneighbor_resis(core::pose::Pose,std::string [,double=10.0])

get_intracomponent_and_intraneighbor_subpose( (Pose)pose, (str)sym_dof_name [, (float)contact_dist=10.0]) -> Pose :
    core/pose/symmetry/util.hh:215

    C++ signature :
        core::pose::Pose get_intracomponent_and_intraneighbor_subpose(core::pose::Pose,std::string [,double=10.0])

get_intracomponent_and_intraneighbor_subs( (Pose)pose, (str)sym_dof_name [, (float)contact_dist=10.0]) -> vector1_string :
    core/pose/symmetry/util.hh:212

    C++ signature :
        utility::vector1<std::string, std::allocator<std::string> > get_intracomponent_and_intraneighbor_subs(core::pose::Pose,std::string [,double=10.0])

get_intracomponent_and_neighbor_resis( (Pose)pose, (str)sym_dof_name [, (float)contact_dist=10.0]) -> vector1_Size :
    core/pose/symmetry/util.hh:191

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > get_intracomponent_and_neighbor_resis(core::pose::Pose,std::string [,double=10.0])

get_intracomponent_and_neighbor_subpose( (Pose)pose, (str)sym_dof_name [, (float)contact_dist=10.0]) -> Pose :
    core/pose/symmetry/util.hh:188

    C++ signature :
        core::pose::Pose get_intracomponent_and_neighbor_subpose(core::pose::Pose,std::string [,double=10.0])

get_intracomponent_and_neighbor_subs( (Pose)pose, (str)sym_dof_name [, (float)contact_dist=10.0]) -> vector1_string :
    core/pose/symmetry/util.hh:185

    C++ signature :
        utility::vector1<std::string, std::allocator<std::string> > get_intracomponent_and_neighbor_subs(core::pose::Pose,std::string [,double=10.0])

get_intracomponent_resis( (Pose)pose, (str)sym_dof_name [, (float)contact_dist=10.0]) -> vector1_Size :
    core/pose/symmetry/util.hh:200

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > get_intracomponent_resis(core::pose::Pose,std::string [,double=10.0])

get_intracomponent_subpose( (Pose)pose, (str)sym_dof_name [, (float)contact_dist=10.0]) -> Pose :
    core/pose/symmetry/util.hh:197

    C++ signature :
        core::pose::Pose get_intracomponent_subpose(core::pose::Pose,std::string [,double=10.0])

get_intracomponent_subs( (Pose)pose, (str)sym_dof_name [, (float)contact_dist=10.0]) -> vector1_string :
    core/pose/symmetry/util.hh:194

    C++ signature :
        utility::vector1<std::string, std::allocator<std::string> > get_intracomponent_subs(core::pose::Pose,std::string [,double=10.0])

get_jump_name_to_components( (Pose)pose, (str)jname) -> vector1_char :
    core/pose/symmetry/util.hh:258

    C++ signature :
        utility::vector1<char, std::allocator<char> > get_jump_name_to_components(core::pose::Pose,std::string)

get_jump_name_to_subunits( (Pose)pose, (str)jname) -> vector1_Size :
    core/pose/symmetry/util.hh:259

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > get_jump_name_to_subunits(core::pose::Pose,std::string)

get_neighbor_resis( (Pose)pose, (str)sym_dof_name [, (float)contact_dist=10.0]) -> vector1_Size :
    core/pose/symmetry/util.hh:209

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > get_neighbor_resis(core::pose::Pose,std::string [,double=10.0])

get_neighbor_subpose( (Pose)pose, (str)sym_dof_name [, (float)contact_dist=10.0]) -> Pose :
    core/pose/symmetry/util.hh:206

    C++ signature :
        core::pose::Pose get_neighbor_subpose(core::pose::Pose,std::string [,double=10.0])

get_neighbor_subs( (Pose)pose, (str)sym_dof_name [, (float)contact_dist=10.0]) -> vector1_string :
    core/pose/symmetry/util.hh:203

    C++ signature :
        utility::vector1<std::string, std::allocator<std::string> > get_neighbor_subs(core::pose::Pose,std::string [,double=10.0])

get_resis( (Pose)pose, (vector1_string)subs) -> vector1_Size :
    core/pose/symmetry/util.hh:155

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > get_resis(core::pose::Pose,utility::vector1<std::string, std::allocator<std::string> >)

get_resnum_to_subunit_component( (Pose)pose, (int)resnum) -> str :
    core/pose/symmetry/util.hh:260

    C++ signature :
        std::string get_resnum_to_subunit_component(core::pose::Pose,unsigned long)

get_subpose( (Pose)pose, (vector1_string)subs) -> Pose :
    core/pose/symmetry/util.hh:152

    C++ signature :
        core::pose::Pose get_subpose(core::pose::Pose,utility::vector1<std::string, std::allocator<std::string> >)

get_subunit_name_to_component( (Pose)pose, (str)vname) -> str :
    core/pose/symmetry/util.hh:257

    C++ signature :
        char get_subunit_name_to_component(core::pose::Pose,std::string)

get_sym_aware_jump_num( (Pose)pose, (int)jump_num) -> int :
    core/pose/symmetry/util.hh:237

    C++ signature :
        int get_sym_aware_jump_num(core::pose::Pose,unsigned long)

get_symdof_subunits( (Pose)pose, (str)jname) -> vector1_Size :
    core/pose/symmetry/util.hh:249

    C++ signature :
        utility::vector1<unsigned long, std::allocator<unsigned long> > get_symdof_subunits(core::pose::Pose,std::string)

get_symm_axis( (Pose)pose) -> xyzVector_Real :
    core/pose/symmetry/util.hh:128

    C++ signature :
        numeric::xyzVector<double> get_symm_axis(core::pose::Pose {lvalue})

intracomponent_contact( (Pose)pose, (str)sym_dof_name [, (float)contact_dist=10.0]) -> bool :
    core/pose/symmetry/util.hh:182

    C++ signature :
        bool intracomponent_contact(core::pose::Pose,std::string [,double=10.0])

is_multicomponent( (Pose)pose) -> bool :
    core/pose/symmetry/util.hh:252

    C++ signature :
        bool is_multicomponent(core::pose::Pose)

is_singlecomponent( (Pose)pose) -> bool :
    core/pose/symmetry/util.hh:253

    C++ signature :
        bool is_singlecomponent(core::pose::Pose)

is_symmetric( (Energies)energies) -> bool :
    core/pose/symmetry/util.hh:45

    C++ signature :
        bool is_symmetric(core::scoring::Energies)

is_symmetric( (ScoreFunction)scorefxn) -> bool :
    core/pose/symmetry/util.hh:42

    C++ signature :
        bool is_symmetric(core::scoring::ScoreFunction)

is_symmetric( (Pose)pose) -> bool :
    core/pose/symmetry/util.hh:39

    C++ signature :
        bool is_symmetric(core::pose::Pose)

jump_num_sym_dof( (Pose)pose, (int)jnum) -> str :
    core/pose/symmetry/util.hh:246

    C++ signature :
        std::string jump_num_sym_dof(core::pose::Pose,unsigned long)

make_asymmetric_pose( (Pose)pose) -> None :
    core/pose/symmetry/util.hh:80

    C++ signature :
        void make_asymmetric_pose(core::pose::Pose {lvalue})

make_residue_mask_symmetric( (Pose)p, (vector1_bool)msk) -> None :
    core/pose/symmetry/util.hh:231

    C++ signature :
        void make_residue_mask_symmetric(core::pose::Pose,utility::vector1<bool, std::allocator<bool> > {lvalue})

make_score_function_consistent_with_symmetric_state_of_pose( (Pose)pose, (__CPP_ScoreFunction__)scorefxn) -> None :
    core/pose/symmetry/util.hh:54

    C++ signature :
        void make_score_function_consistent_with_symmetric_state_of_pose(core::pose::Pose,boost::shared_ptr<core::scoring::ScoreFunction> {lvalue})

make_symmetric_movemap( (Pose)pose, (MoveMap)movemap) -> None :
    core/pose/symmetry/util.hh:112

    C++ signature :
        void make_symmetric_movemap(core::pose::Pose,core::kinematics::MoveMap {lvalue})

make_symmetric_pdb_info( (Pose)pose, (PDBInfo)pdb_info_src, (PDBInfo)pdb_info_target) -> None :
    core/pose/symmetry/util.hh:98

    C++ signature :
        void make_symmetric_pdb_info(core::pose::Pose,boost::shared_ptr<core::pose::PDBInfo>,boost::shared_ptr<core::pose::PDBInfo>)

make_symmetric_pose( (Pose)pose [, (str)symmdef_file='']) -> None :
    core/pose/symmetry/util.hh:75

    C++ signature :
        void make_symmetric_pose(core::pose::Pose {lvalue} [,std::string=''])

make_symmetric_pose( (Pose)pose, (SymmData)symmdata) -> None :
    core/pose/symmetry/util.hh:69

    C++ signature :
        void make_symmetric_pose(core::pose::Pose {lvalue},core::conformation::symmetry::SymmData {lvalue})

make_symmetric_pose( (Pose)pose, (SymmetryInfo)symmetry_info) -> None :
    core/pose/symmetry/util.hh:63

    C++ signature :
        void make_symmetric_pose(core::pose::Pose {lvalue},core::conformation::symmetry::SymmetryInfo)

partition_by_symm_jumps( (vector1_int)jump_numbers, (FoldTree)ft, (SymmetryInfo)symm_info, (object)partner1) -> None :
    core/pose/symmetry/util.hh:144

    C++ signature :
        void partition_by_symm_jumps(utility::vector1<int, std::allocator<int> >,core::kinematics::FoldTree,boost::shared_ptr<core::conformation::symmetry::SymmetryInfo const>,ObjexxFCL::FArray1D<bool> {lvalue})

rotate_anchor_to_x_axis( (Pose)pose) -> None :
    core/pose/symmetry/util.hh:124

    C++ signature :
        void rotate_anchor_to_x_axis(core::pose::Pose {lvalue})

sealed_symmetric_fold_tree( (Pose)pose) -> FoldTree :
    core/pose/symmetry/util.hh:234

    C++ signature :
        core::kinematics::FoldTree sealed_symmetric_fold_tree(core::pose::Pose {lvalue})

set_asymm_unit_fold_tree( (Pose)p, (FoldTree)f) -> None :
    core/pose/symmetry/util.hh:136

    C++ signature :
        void set_asymm_unit_fold_tree(core::pose::Pose {lvalue},core::kinematics::FoldTree)

sym_dof_jump_num( (Pose)pose, (str)jname) -> int :
    core/pose/symmetry/util.hh:243

    C++ signature :
        int sym_dof_jump_num(core::pose::Pose,std::string)

sym_dof_names( (Pose)pose) -> vector1_string :
    core/pose/symmetry/util.hh:240

    C++ signature :
        utility::vector1<std::string, std::allocator<std::string> > sym_dof_names(core::pose::Pose)

symmetric_components( (Pose)pose) -> vector1_char :
    core/pose/symmetry/util.hh:251

    C++ signature :
        utility::vector1<char, std::allocator<char> > symmetric_components(core::pose::Pose)

symmetrize_fold_tree( (Pose)p, (FoldTree)f) -> None :
    core/pose/symmetry/util.hh:133

    C++ signature :
        void symmetrize_fold_tree(core::pose::Pose,core::kinematics::FoldTree {lvalue})

symmetry_info( (Pose)pose) -> SymmetryInfo :
    core/pose/symmetry/util.hh:57

    C++ signature :
        boost::shared_ptr<core::conformation::symmetry::SymmetryInfo const> symmetry_info(core::pose::Pose)