Module _protocols_ncbb_

calculate_statistics( (__CPP_Job__)curr_job, (Pose)pose, (__CPP_ScoreFunction__)score_fxn) -> None :
    protocols/ncbb/util.hh:109

    C++ signature :
        void calculate_statistics(boost::shared_ptr<protocols::jd2::Job>,core::pose::Pose,boost::shared_ptr<core::scoring::ScoreFunction>)

init_common_options( (Tag)tag, (DataMap)data, (__CPP_ScoreFunction__)score_fxn_, (float)mc_temp_, (float)pert_mc_temp_, (float)pert_dock_rot_mag_, (float)pert_dock_trans_mag_, (float)pert_pep_small_temp_, (float)pert_pep_small_H_, (float)pert_pep_small_L_, (float)pert_pep_small_E_, (float)pert_pep_shear_temp_, (float)pert_pep_shear_H_, (float)pert_pep_shear_L_, (float)pert_pep_shear_E_, (int)pert_pep_num_rep_, (int)pert_num_, (int)dock_design_loop_num_, (bool)no_design_, (bool)final_design_min_, (bool)use_soft_rep_, (bool)mc_initial_pose_, (bool)pymol_, (bool)keep_history_) -> None :
    protocols/ncbb/util.hh:118

    C++ signature :
        void init_common_options(boost::shared_ptr<utility::tag::Tag const>,basic::datacache::DataMap {lvalue},boost::shared_ptr<core::scoring::ScoreFunction>,double {lvalue},double {lvalue},double {lvalue},double {lvalue},double {lvalue},double {lvalue},double {lvalue},double {lvalue},double {lvalue},double {lvalue},double {lvalue},double {lvalue},unsigned long {lvalue},unsigned long {lvalue},unsigned long {lvalue},bool {lvalue},bool {lvalue},bool {lvalue},bool {lvalue},bool {lvalue},bool {lvalue})

ncbb_design_main_loop( (int)loop_num, (int)pert_num, (Pose)pose, (__CPP_TrialMover__)pert_trial, (vector1_Size)designable_positions, (int)pep_start, (int)pep_end, (__CPP_TaskAwareMinMover__)desn_ta_min, (__CPP_ScoreFunction__)score_fxn, (__CPP_MonteCarlo__)mc) -> None :
    protocols/ncbb/util.hh:106

    C++ signature :
        void ncbb_design_main_loop(unsigned long,unsigned long,core::pose::Pose,boost::shared_ptr<protocols::moves::TrialMover>,utility::vector1<unsigned long, std::allocator<unsigned long> >,unsigned long,unsigned long,boost::shared_ptr<protocols::simple_moves::TaskAwareMinMover>,boost::shared_ptr<core::scoring::ScoreFunction>,boost::shared_ptr<protocols::moves::MonteCarlo>)

    protocols/ncbb/util.hh:115

    C++ signature :
        void setup_filter_stats()

Returns: None :

setup_pert_foldtree( (Pose)pose) -> None :
    protocols/ncbb/util.hh:112

    C++ signature :
        void setup_pert_foldtree(core::pose::Pose {lvalue})