rosetta.protocols.branch_angle._protocols_branch_angle

Module _protocols_branch_angle_

Classes

BranchAngleOptimizer
protocols/branch_angle/BranchAngleOptimizer.hh:53

BranchCoef1
a class to store coefficients for branching angle optimization around a single atom atom with three bonded neighbors

BranchCoef1AP

BranchCoef1CAP

BranchCoef2
a class to store coefficients for branching angle optimization around a single atom atom with three bonded neighbors

BranchCoef2AP

BranchCoef2CAP

BranchParam1
a class to store bond angle energy parameters around a single atom atom with three bonded neighbors

BranchParam1AP

BranchParam1CAP

BranchParam2
a class to store bond angle energy parameters around a single atom atom with four bonded neighbors

BranchParam2AP

BranchParam2CAP

Functions

[hide private]

branching_atomid1(...)
branching_atomid1( (Pose)pose, (AtomID)main_atomid1, (AtomID)center_atomid, (AtomID)main_atomid2, (AtomID)branch_atomid1) -> None : get 1 branching atom

branching_atomids2(...)
branching_atomids2( (Pose)pose, (AtomID)main_atomid1, (AtomID)center_atomid, (AtomID)main_atomid2, (AtomID)branch_atomid1, (AtomID)branch_atomid2) -> None : get 2 branching atoms ordered according their torsion offsets

get_branching_atoms2(...)
get_branching_atoms2( (Atom)main_atom2, (Atom)branch_atom1, (Atom)branch_atom2) -> None : get 2 siblings of an atom ordered according their torsion offsets

Variables

[hide private]

__package__ = None

Function Details

[hide private]

branching_atomid1(...)


branching_atomid1( (Pose)pose, (AtomID)main_atomid1, (AtomID)center_atomid, (AtomID)main_atomid2, (AtomID)branch_atomid1) -> None :
    get 1 branching atom
    

    C++ signature :
        void branching_atomid1(core::pose::Pose,core::id::AtomID,core::id::AtomID,core::id::AtomID,core::id::AtomID {lvalue})

branching_atomids2(...)


branching_atomids2( (Pose)pose, (AtomID)main_atomid1, (AtomID)center_atomid, (AtomID)main_atomid2, (AtomID)branch_atomid1, (AtomID)branch_atomid2) -> None :
    get 2 branching atoms ordered according their torsion offsets
    

    C++ signature :
        void branching_atomids2(core::pose::Pose,core::id::AtomID,core::id::AtomID,core::id::AtomID,core::id::AtomID {lvalue},core::id::AtomID {lvalue})

get_branching_atoms2(...)


get_branching_atoms2( (Atom)main_atom2, (Atom)branch_atom1, (Atom)branch_atom2) -> None :
    get 2 siblings of an atom ordered according their torsion offsets
    

    C++ signature :
        void get_branching_atoms2(boost::shared_ptr<core::kinematics::tree::Atom const>,boost::shared_ptr<core::kinematics::tree::Atom const> {lvalue},boost::shared_ptr<core::kinematics::tree::Atom const> {lvalue})