Module _protocols_helical_bundle_

align_mainchain_atoms( (Pose)pose, (Pose)ref_pose, (int)helix_start, (int)helix_end) -> None :
    Align mainchain atoms of pose to ref_pose mainchain atoms.
    

    C++ signature :
        void align_mainchain_atoms(core::pose::Pose {lvalue},core::pose::Pose,unsigned long,unsigned long)

align_mainchain_atoms_of_residue_range( (Pose)pose, (Pose)ref_pose, (int)helix_start, (int)helix_end) -> None :
    Align mainchain atoms of pose to ref_pose mainchain atoms,
    moving ONLY the residues involved in the alignment.
    

    C++ signature :
        void align_mainchain_atoms_of_residue_range(core::pose::Pose {lvalue},core::pose::Pose,unsigned long,unsigned long)

copy_helix_bondangles( (Pose)pose, (Pose)ref_pose, (int)helix_start, (int)helix_end) -> None :
    Copy backbone bond angle values from one pose, where helix mainchain atom coordinates have been
    set with the Crick equations, to another with ideal geometry.
    

    C++ signature :
        void copy_helix_bondangles(core::pose::Pose {lvalue},core::pose::Pose,unsigned long,unsigned long)

copy_helix_bondlengths( (Pose)pose, (Pose)ref_pose, (int)helix_start, (int)helix_end) -> None :
    Copy backbone bond length values from one pose, where helix mainchain atom coordinates have been
    set with the Crick equations, to another with ideal geometry.
    

    C++ signature :
        void copy_helix_bondlengths(core::pose::Pose {lvalue},core::pose::Pose,unsigned long,unsigned long)

copy_helix_dihedrals( (Pose)pose, (Pose)ref_pose, (int)helix_start, (int)helix_end) -> None :
    Copy backbone dihedral values from one pose, where helix mainchain atom coordinates have been
    set with the Crick equations, to another with ideal geometry.
    

    C++ signature :
        void copy_helix_dihedrals(core::pose::Pose {lvalue},core::pose::Pose,unsigned long,unsigned long)

generate_atom_positions( (object)outvector, (Pose)helixpose, (int)helix_start, (int)helix_end, (float)r0, (float)omega0, (float)delta_omega0, (float)delta_t, (float)z1_offset, (float)z0_offset, (bool)invert_helix, (vector1_Real)r1, (float)omega1, (float)z1, (vector1_Real)delta_omega1, (float)delta_omega1_all, (vector1_Real)delta_z1, (bool)failed) -> None :
    Generate the x,y,z coordinates of the mainchain atoms using the Crick equations.
    Coordinates will be returned as a vector of vectors of xyzVectors.  The outer
    index will refer to residue number, and the inner index will refer to atom number.
    Returns failed=true if coordinates could not be generated, false otherwise.
    

    C++ signature :
        void generate_atom_positions(utility::vector1<utility::vector1<numeric::xyzVector<double>, std::allocator<numeric::xyzVector<double> > >, std::allocator<utility::vector1<numeric::xyzVector<double>, std::allocator<numeric::xyzVector<double> > > > > {lvalue},core::pose::Pose,unsigned long,unsigned long,double,double,double,double,double,double,bool,utility::vector1<double, std::allocator<double> >,double,double,utility::vector1<double, std::allocator<double> >,double,utility::vector1<double, std::allocator<double> >,bool {lvalue})

place_atom_positions( (Pose)pose, (object)atom_positions, (int)helix_start, (int)helix_end) -> None :
    Place the helix mainchain atoms based on the Crick equations.
    

    C++ signature :
        void place_atom_positions(core::pose::Pose {lvalue},utility::vector1<utility::vector1<numeric::xyzVector<double>, std::allocator<numeric::xyzVector<double> > >, std::allocator<utility::vector1<numeric::xyzVector<double>, std::allocator<numeric::xyzVector<double> > > > >,unsigned long,unsigned long)

read_minor_helix_params( (str)filename, (vector1_Real)r1, (float)omega1, (float)z1, (vector1_Real)delta_omega1, (vector1_Real)delta_z1) -> None :
    protocols/helical_bundle/util.hh:57

    C++ signature :
        void read_minor_helix_params(std::string,utility::vector1<double, std::allocator<double> > {lvalue},double {lvalue},double {lvalue},utility::vector1<double, std::allocator<double> > {lvalue},utility::vector1<double, std::allocator<double> > {lvalue})

write_minor_helix_params( (str)filename, (vector1_Real)r1, (float)omega1, (float)z1, (vector1_Real)delta_omega1, (vector1_Real)delta_z1) -> None :
    protocols/helical_bundle/util.hh:48

    C++ signature :
        void write_minor_helix_params(std::string,utility::vector1<double, std::allocator<double> >,double,double,utility::vector1<double, std::allocator<double> >,utility::vector1<double, std::allocator<double> >)

bgsh_delta_omega0

Value:

rosetta.protocols.helical_bundle._protocols_helical_bundle_.DoFType.bg sh_delta_omega0

bgsh_delta_omega1

Value:

rosetta.protocols.helical_bundle._protocols_helical_bundle_.DoFType.bg sh_delta_omega1

bgsh_delta_t

Value:

rosetta.protocols.helical_bundle._protocols_helical_bundle_.DoFType.bg sh_delta_t

bgsh_omega0

Value:

rosetta.protocols.helical_bundle._protocols_helical_bundle_.DoFType.bg sh_omega0

bgsh_r0

Value:

rosetta.protocols.helical_bundle._protocols_helical_bundle_.DoFType.bg sh_r0

bgsh_undefined_dof

Value:

rosetta.protocols.helical_bundle._protocols_helical_bundle_.DoFType.bg sh_undefined_dof

bgsh_z0_offset

Value:

rosetta.protocols.helical_bundle._protocols_helical_bundle_.DoFType.bg sh_z0_offset

bgsh_z1_offset

Value:

rosetta.protocols.helical_bundle._protocols_helical_bundle_.DoFType.bg sh_z1_offset

pt_gaussian

Value:

rosetta.protocols.helical_bundle._protocols_helical_bundle_.PertType.p t_gaussian

pt_undefined_perturbation

Value:

rosetta.protocols.helical_bundle._protocols_helical_bundle_.PertType.p t_undefined_perturbation

pt_uniform

Value:

rosetta.protocols.helical_bundle._protocols_helical_bundle_.PertType.p t_uniform