Module _core_pose_motif_

get_atoms_ala( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:147

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_ala(core::pose::Pose,unsigned long)

get_atoms_ala_downstream( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:168

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_ala_downstream(core::pose::Pose,unsigned long)

get_atoms_arg( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:161

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_arg(core::pose::Pose,unsigned long)

get_atoms_arg_downstream( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:182

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_arg_downstream(core::pose::Pose,unsigned long)

get_atoms_asn( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:158

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_asn(core::pose::Pose,unsigned long)

get_atoms_asn_downstream( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:179

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_asn_downstream(core::pose::Pose,unsigned long)

get_atoms_asp( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:149

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_asp(core::pose::Pose,unsigned long)

get_atoms_asp_downstream( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:170

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_asp_downstream(core::pose::Pose,unsigned long)

get_atoms_cys( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:148

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_cys(core::pose::Pose,unsigned long)

get_atoms_cys_downstream( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:169

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_cys_downstream(core::pose::Pose,unsigned long)

get_atoms_gln( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:160

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_gln(core::pose::Pose,unsigned long)

get_atoms_gln_downstream( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:181

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_gln_downstream(core::pose::Pose,unsigned long)

get_atoms_glu( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:150

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_glu(core::pose::Pose,unsigned long)

get_atoms_glu_downstream( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:171

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_glu_downstream(core::pose::Pose,unsigned long)

get_atoms_gly( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:152

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_gly(core::pose::Pose,unsigned long)

get_atoms_gly_downstream( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:173

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_gly_downstream(core::pose::Pose,unsigned long)

get_atoms_his( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:153

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_his(core::pose::Pose,unsigned long)

get_atoms_his_downstream( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:174

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_his_downstream(core::pose::Pose,unsigned long)

get_atoms_ile( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:154

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_ile(core::pose::Pose,unsigned long)

get_atoms_ile_downstream( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:175

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_ile_downstream(core::pose::Pose,unsigned long)

get_atoms_leu( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:156

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_leu(core::pose::Pose,unsigned long)

get_atoms_leu_downstream( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:177

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_leu_downstream(core::pose::Pose,unsigned long)

get_atoms_lys( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:155

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_lys(core::pose::Pose,unsigned long)

get_atoms_lys_downstream( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:176

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_lys_downstream(core::pose::Pose,unsigned long)

get_atoms_met( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:157

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_met(core::pose::Pose,unsigned long)

get_atoms_met_downstream( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:178

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_met_downstream(core::pose::Pose,unsigned long)

get_atoms_phe( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:151

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_phe(core::pose::Pose,unsigned long)

get_atoms_phe_downstream( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:172

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_phe_downstream(core::pose::Pose,unsigned long)

get_atoms_pro( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:159

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_pro(core::pose::Pose,unsigned long)

get_atoms_pro_downstream( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:180

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_pro_downstream(core::pose::Pose,unsigned long)

get_atoms_ser( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:162

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_ser(core::pose::Pose,unsigned long)

get_atoms_ser_downstream( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:183

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_ser_downstream(core::pose::Pose,unsigned long)

get_atoms_thr( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:163

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_thr(core::pose::Pose,unsigned long)

get_atoms_thr_downstream( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:184

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_thr_downstream(core::pose::Pose,unsigned long)

get_atoms_trp( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:165

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_trp(core::pose::Pose,unsigned long)

get_atoms_trp_downstream( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:186

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_trp_downstream(core::pose::Pose,unsigned long)

get_atoms_tyr( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:166

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_tyr(core::pose::Pose,unsigned long)

get_atoms_tyr_downstream( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:187

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_tyr_downstream(core::pose::Pose,unsigned long)

get_atoms_val( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:164

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_val(core::pose::Pose,unsigned long)

get_atoms_val_downstream( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:185

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_atoms_val_downstream(core::pose::Pose,unsigned long)

get_backbone_reference_frame( (xyzVector_Real)N, (xyzVector_Real)CA, (xyzVector_Real)C) -> xyzTransform_T_double_T :
    core/pose/motif/reference_frames.hh:64

    C++ signature :
        numeric::xyzTransform<double> get_backbone_reference_frame(numeric::xyzVector<double>,numeric::xyzVector<double>,numeric::xyzVector<double>)

get_backbone_reference_frame( (Pose)pose, (int)ir) -> xyzTransform_T_double_T :
    core/pose/motif/reference_frames.hh:36

    C++ signature :
        numeric::xyzTransform<double> get_backbone_reference_frame(core::pose::Pose,unsigned long)

get_backbone_reference_frame_atomids( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:128

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_backbone_reference_frame_atomids(core::pose::Pose,unsigned long)

get_backbone_reference_frame_atomids_with_downstream( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:134

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_backbone_reference_frame_atomids_with_downstream(core::pose::Pose,unsigned long)

get_cterminal_peptide_bond_reference_frame( (xyzVector_Real)O, (xyzVector_Real)C, (xyzVector_Real)CA) -> xyzTransform_T_double_T :
    core/pose/motif/reference_frames.hh:76

    C++ signature :
        numeric::xyzTransform<double> get_cterminal_peptide_bond_reference_frame(numeric::xyzVector<double>,numeric::xyzVector<double>,numeric::xyzVector<double>)

get_cterminal_peptide_bond_reference_frame( (Pose)pose, (int)ir) -> xyzTransform_T_double_T :
    core/pose/motif/reference_frames.hh:46

    C++ signature :
        numeric::xyzTransform<double> get_cterminal_peptide_bond_reference_frame(core::pose::Pose,unsigned long)

get_cterminal_peptide_bond_reference_frame_atomids( (Pose)pose, (int)ir [, (bool)extra=False]) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:105

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_cterminal_peptide_bond_reference_frame_atomids(core::pose::Pose,unsigned long [,bool=False])

get_frame_ala( (Pose)pose, (int)ir) -> xyzTransform_T_double_T :
    core/pose/motif/reference_frames.hh:79

    C++ signature :
        numeric::xyzTransform<double> get_frame_ala(core::pose::Pose,unsigned long)

get_frame_arg( (Pose)pose, (int)ir) -> xyzTransform_T_double_T :
    core/pose/motif/reference_frames.hh:93

    C++ signature :
        numeric::xyzTransform<double> get_frame_arg(core::pose::Pose,unsigned long)

get_frame_asn( (Pose)pose, (int)ir) -> xyzTransform_T_double_T :
    core/pose/motif/reference_frames.hh:90

    C++ signature :
        numeric::xyzTransform<double> get_frame_asn(core::pose::Pose,unsigned long)

get_frame_asp( (Pose)pose, (int)ir) -> xyzTransform_T_double_T :
    core/pose/motif/reference_frames.hh:81

    C++ signature :
        numeric::xyzTransform<double> get_frame_asp(core::pose::Pose,unsigned long)

get_frame_cys( (Pose)pose, (int)ir) -> xyzTransform_T_double_T :
    core/pose/motif/reference_frames.hh:80

    C++ signature :
        numeric::xyzTransform<double> get_frame_cys(core::pose::Pose,unsigned long)

get_frame_gln( (Pose)pose, (int)ir) -> xyzTransform_T_double_T :
    core/pose/motif/reference_frames.hh:92

    C++ signature :
        numeric::xyzTransform<double> get_frame_gln(core::pose::Pose,unsigned long)

get_frame_glu( (Pose)pose, (int)ir) -> xyzTransform_T_double_T :
    core/pose/motif/reference_frames.hh:82

    C++ signature :
        numeric::xyzTransform<double> get_frame_glu(core::pose::Pose,unsigned long)

get_frame_gly( (Pose)pose, (int)ir) -> xyzTransform_T_double_T :
    core/pose/motif/reference_frames.hh:84

    C++ signature :
        numeric::xyzTransform<double> get_frame_gly(core::pose::Pose,unsigned long)

get_frame_his( (Pose)pose, (int)ir) -> xyzTransform_T_double_T :
    core/pose/motif/reference_frames.hh:85

    C++ signature :
        numeric::xyzTransform<double> get_frame_his(core::pose::Pose,unsigned long)

get_frame_ile( (Pose)pose, (int)ir) -> xyzTransform_T_double_T :
    core/pose/motif/reference_frames.hh:86

    C++ signature :
        numeric::xyzTransform<double> get_frame_ile(core::pose::Pose,unsigned long)

get_frame_leu( (Pose)pose, (int)ir) -> xyzTransform_T_double_T :
    core/pose/motif/reference_frames.hh:88

    C++ signature :
        numeric::xyzTransform<double> get_frame_leu(core::pose::Pose,unsigned long)

get_frame_lys( (Pose)pose, (int)ir) -> xyzTransform_T_double_T :
    core/pose/motif/reference_frames.hh:87

    C++ signature :
        numeric::xyzTransform<double> get_frame_lys(core::pose::Pose,unsigned long)

get_frame_met( (Pose)pose, (int)ir) -> xyzTransform_T_double_T :
    core/pose/motif/reference_frames.hh:89

    C++ signature :
        numeric::xyzTransform<double> get_frame_met(core::pose::Pose,unsigned long)

get_frame_phe( (Pose)pose, (int)ir) -> xyzTransform_T_double_T :
    core/pose/motif/reference_frames.hh:83

    C++ signature :
        numeric::xyzTransform<double> get_frame_phe(core::pose::Pose,unsigned long)

get_frame_pro( (Pose)pose, (int)ir) -> xyzTransform_T_double_T :
    core/pose/motif/reference_frames.hh:91

    C++ signature :
        numeric::xyzTransform<double> get_frame_pro(core::pose::Pose,unsigned long)

get_frame_ser( (Pose)pose, (int)ir) -> xyzTransform_T_double_T :
    core/pose/motif/reference_frames.hh:94

    C++ signature :
        numeric::xyzTransform<double> get_frame_ser(core::pose::Pose,unsigned long)

get_frame_thr( (Pose)pose, (int)ir) -> xyzTransform_T_double_T :
    core/pose/motif/reference_frames.hh:95

    C++ signature :
        numeric::xyzTransform<double> get_frame_thr(core::pose::Pose,unsigned long)

get_frame_trp( (Pose)pose, (int)ir) -> xyzTransform_T_double_T :
    core/pose/motif/reference_frames.hh:97

    C++ signature :
        numeric::xyzTransform<double> get_frame_trp(core::pose::Pose,unsigned long)

get_frame_tyr( (Pose)pose, (int)ir) -> xyzTransform_T_double_T :
    core/pose/motif/reference_frames.hh:98

    C++ signature :
        numeric::xyzTransform<double> get_frame_tyr(core::pose::Pose,unsigned long)

get_frame_val( (Pose)pose, (int)ir) -> xyzTransform_T_double_T :
    core/pose/motif/reference_frames.hh:96

    C++ signature :
        numeric::xyzTransform<double> get_frame_val(core::pose::Pose,unsigned long)

get_nterminal_peptide_bond_reference_frame( (xyzVector_Real)H, (xyzVector_Real)N, (xyzVector_Real)CA) -> xyzTransform_T_double_T :
    core/pose/motif/reference_frames.hh:70

    C++ signature :
        numeric::xyzTransform<double> get_nterminal_peptide_bond_reference_frame(numeric::xyzVector<double>,numeric::xyzVector<double>,numeric::xyzVector<double>)

get_nterminal_peptide_bond_reference_frame( (Pose)pose, (int)ir) -> xyzTransform_T_double_T :
    core/pose/motif/reference_frames.hh:41

    C++ signature :
        numeric::xyzTransform<double> get_nterminal_peptide_bond_reference_frame(core::pose::Pose,unsigned long)

get_nterminal_peptide_bond_reference_frame_atomids( (Pose)pose, (int)ir [, (bool)extra=False]) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:111

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_nterminal_peptide_bond_reference_frame_atomids(core::pose::Pose,unsigned long [,bool=False])

get_peptide_bond_reference_frame( (Pose)pose, (int)ir, (bool)n_or_c) -> xyzTransform_T_double_T :
    core/pose/motif/reference_frames.hh:53

    C++ signature :
        numeric::xyzTransform<double> get_peptide_bond_reference_frame(core::pose::Pose,unsigned long,bool)

get_peptide_bond_reference_frame_atomids( (Pose)pose, (int)ir, (bool)n_or_c [, (bool)extra=False]) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:119

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_peptide_bond_reference_frame_atomids(core::pose::Pose,unsigned long,bool [,bool=False])

get_sidechain_reference_frame( (Pose)pose, (int)ir) -> xyzTransform_T_double_T :
    core/pose/motif/reference_frames.hh:31

    C++ signature :
        numeric::xyzTransform<double> get_sidechain_reference_frame(core::pose::Pose,unsigned long)

get_sidechain_reference_frame_atomids( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:140

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_sidechain_reference_frame_atomids(core::pose::Pose,unsigned long)

get_sidechain_reference_frame_atomids_with_downstream( (Pose)pose, (int)ir) -> vector1_AtomID :
    core/pose/motif/reference_frames.hh:145

    C++ signature :
        utility::vector1<core::id::AtomID, std::allocator<core::id::AtomID> > get_sidechain_reference_frame_atomids_with_downstream(core::pose::Pose,unsigned long)