Package rosetta :: Package protocols :: Package match :: Package upstream :: Module _protocols_match_upstream_

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Module _protocols_match_upstream_

Classes

[hide private]

BuildSet
Still sketchy on this class.

BuildSetAP

BuildSetCAP

ChiStrategy
protocols/match/upstream/ProteinUpstreamBuilder.fwd.hh:24

DunbrackSCSampler
Basic class for sidechain sampling that pulls data from the Dunbrack rotamer library.

DunbrackSCSamplerAP

DunbrackSCSamplerCAP

FullChiSampleSet
protocols/match/upstream/ProteinUpstreamBuilder.hh:337

FullChiSampleSetAP

FullChiSampleSetCAP

OriginalBackboneBuildPoint
protocols/match/upstream/OriginalScaffoldBuildPoint.hh:93

OriginalBackboneBuildPointAP

OriginalBackboneBuildPointCAP

ProteinBackboneBuildPoint
protocols/match/upstream/OriginalScaffoldBuildPoint.hh:45

ProteinBackboneBuildPointAP

ProteinBackboneBuildPointCAP

ProteinSCSampler
protocols/match/upstream/ProteinSCSampler.hh:37

ProteinSCSamplerAP

ProteinSCSamplerCAP

ProteinUpstreamBuilder
protocols/match/upstream/ProteinUpstreamBuilder.hh:431

ProteinUpstreamBuilderAP

ProteinUpstreamBuilderCAP

SampleStrategyData
This class holds all of the data associated with the logic for generating extra samples for a particular chi angle.

SampleStrategyDataAP

SampleStrategyDataCAP

ScaffoldBuildPoint
protocols/match/upstream/ScaffoldBuildPoint.hh:43

ScaffoldBuildPointAP

ScaffoldBuildPointCAP

UpstreamBuilder
protocols/match/upstream/UpstreamBuilder.hh:43

UpstreamBuilderAP

UpstreamBuilderCAP

UpstreamResTypeGeometry
A simple class that describes the geometry for a particular residue type.

UpstreamResTypeGeometryAP

UpstreamResTypeGeometryCAP

UpstreamResidueProcessor
protocols/match/upstream/UpstreamBuilder.hh:130

UpstreamResidueProcessorAP

UpstreamResidueProcessorCAP

__CPP_DunbrackSCSampler__

__CPP_OriginalBackboneBuildPoint__

__CPP_ProteinSCSampler__

__CPP_ProteinUpstreamBuilder__

__CPP_ScaffoldBuildPoint__

__CPP_UpstreamBuilder__

__CPP_UpstreamResidueProcessor__

Variables

[hide private]

__package__ = None

follow_EX_flags = rosetta.protocols.match.upstream._protocols_...

no_samples = rosetta.protocols.match.upstream._protocols_match...

nonrotameric_chi_sample_wi_nrchi_bin = rosetta.protocols.match...

nonrotameric_chi_sample_wi_nrchi_bin_to_lower_boundary = roset...

rotameric_chi_mimic_EX_flags = rosetta.protocols.match.upstrea...

rotameric_chi_partition_sd_range = rosetta.protocols.match.ups...

rotameric_chi_step_by_value = rosetta.protocols.match.upstream...

rotameric_chi_step_wi_sd_range = rosetta.protocols.match.upstr...

Variables Details

[hide private]

follow_EX_flags

Value:

rosetta.protocols.match.upstream._protocols_match_upstream_.ChiStrateg
y.follow_EX_flags

no_samples

Value:

rosetta.protocols.match.upstream._protocols_match_upstream_.ChiStrateg
y.no_samples

nonrotameric_chi_sample_wi_nrchi_bin

Value:

rosetta.protocols.match.upstream._protocols_match_upstream_.ChiStrateg
y.nonrotameric_chi_sample_wi_nrchi_bin

nonrotameric_chi_sample_wi_nrchi_bin_to_lower_boundary

Value:

rosetta.protocols.match.upstream._protocols_match_upstream_.ChiStrateg
y.nonrotameric_chi_sample_wi_nrchi_bin_to_lower_boundary

rotameric_chi_mimic_EX_flags

Value:

rosetta.protocols.match.upstream._protocols_match_upstream_.ChiStrateg
y.rotameric_chi_mimic_EX_flags

rotameric_chi_partition_sd_range

Value:

rosetta.protocols.match.upstream._protocols_match_upstream_.ChiStrateg
y.rotameric_chi_partition_sd_range

rotameric_chi_step_by_value

Value:

rosetta.protocols.match.upstream._protocols_match_upstream_.ChiStrateg
y.rotameric_chi_step_by_value

rotameric_chi_step_wi_sd_range

Value:

rosetta.protocols.match.upstream._protocols_match_upstream_.ChiStrateg
y.rotameric_chi_step_wi_sd_range