Module Hierarchy

• rosetta: (c) Copyright Rosetta Commons Member Institutions.
  • rosetta.PyMolLink: (c) Copyright Rosetta Commons Member Institutions.
  • rosetta.basic
    • rosetta.basic._basic_
    • rosetta.basic.database
      • rosetta.basic.database._basic_database_
      • rosetta.basic.database.insert_statement_generator
        • rosetta.basic.database.insert_statement_generator._basic_database_insert_statement_generator_
      • rosetta.basic.database.schema_generator
        • rosetta.basic.database.schema_generator._basic_database_schema_generator_
    • rosetta.basic.datacache
      • rosetta.basic.datacache._basic_datacache_
    • rosetta.basic.gpu
      • rosetta.basic.gpu._basic_gpu_
    • rosetta.basic.message_listening
      • rosetta.basic.message_listening._basic_message_listening_
    • rosetta.basic.options
      • rosetta.basic.options._basic_options_
      • rosetta.basic.options.keys
        • rosetta.basic.options.keys._basic_options_keys_
    • rosetta.basic.resource_manager
      • rosetta.basic.resource_manager._basic_resource_manager_
      • rosetta.basic.resource_manager.fallback_configuration
        • rosetta.basic.resource_manager.fallback_configuration._basic_resource_manager_fallback_configuration_
      • rosetta.basic.resource_manager.locator
        • rosetta.basic.resource_manager.locator._basic_resource_manager_locator_
    • rosetta.basic.sampling
      • rosetta.basic.sampling._basic_sampling_
      • rosetta.basic.sampling.orientations
        • rosetta.basic.sampling.orientations._basic_sampling_orientations_
    • rosetta.basic.svd
      • rosetta.basic.svd._basic_svd_
  • rosetta.core
    • rosetta.core._core_
    • rosetta.core.chemical
      • rosetta.core.chemical._core_chemical_
      • rosetta.core.chemical.carbohydrates
        • rosetta.core.chemical.carbohydrates._core_chemical_carbohydrates_
      • rosetta.core.chemical.gasteiger
        • rosetta.core.chemical.gasteiger._core_chemical_gasteiger_
      • rosetta.core.chemical.orbitals
        • rosetta.core.chemical.orbitals._core_chemical_orbitals_
      • rosetta.core.chemical.residue_properties
        • rosetta.core.chemical.residue_properties._core_chemical_residue_properties_
      • rosetta.core.chemical.rna
        • rosetta.core.chemical.rna._core_chemical_rna_
      • rosetta.core.chemical.sdf
        • rosetta.core.chemical.sdf._core_chemical_sdf_
    • rosetta.core.coarse
      • rosetta.core.coarse._core_coarse_
    • rosetta.core.conformation
      • rosetta.core.conformation._core_conformation_
      • rosetta.core.conformation.membrane
        • rosetta.core.conformation.membrane._core_conformation_membrane_
      • rosetta.core.conformation.orbitals
        • rosetta.core.conformation.orbitals._core_conformation_orbitals_
      • rosetta.core.conformation.parametric
        • rosetta.core.conformation.parametric._core_conformation_parametric_
      • rosetta.core.conformation.signals
        • rosetta.core.conformation.signals._core_conformation_signals_
      • rosetta.core.conformation.symmetry
        • rosetta.core.conformation.symmetry._core_conformation_symmetry_
    • rosetta.core.environment
      • rosetta.core.environment._core_environment_
    • rosetta.core.fragment
      • rosetta.core.fragment._core_fragment_
      • rosetta.core.fragment.picking_old
        • rosetta.core.fragment.picking_old._core_fragment_picking_old_
        • rosetta.core.fragment.picking_old.concepts
          • rosetta.core.fragment.picking_old.concepts._core_fragment_picking_old_concepts_
        • rosetta.core.fragment.picking_old.vall
          • rosetta.core.fragment.picking_old.vall._core_fragment_picking_old_vall_
          • rosetta.core.fragment.picking_old.vall.eval
            • rosetta.core.fragment.picking_old.vall.eval._core_fragment_picking_old_vall_eval_
          • rosetta.core.fragment.picking_old.vall.gen
            • rosetta.core.fragment.picking_old.vall.gen._core_fragment_picking_old_vall_gen_
          • rosetta.core.fragment.picking_old.vall.scores
            • rosetta.core.fragment.picking_old.vall.scores._core_fragment_picking_old_vall_scores_
    • rosetta.core.graph
      • rosetta.core.graph._core_graph_
    • rosetta.core.grid
      • rosetta.core.grid._core_grid_
    • rosetta.core.id
      • rosetta.core.id._core_id_
    • rosetta.core.import_pose
      • rosetta.core.import_pose._core_import_pose_
      • rosetta.core.import_pose.atom_tree_diffs
        • rosetta.core.import_pose.atom_tree_diffs._core_import_pose_atom_tree_diffs_
      • rosetta.core.import_pose.pose_stream
        • rosetta.core.import_pose.pose_stream._core_import_pose_pose_stream_
    • rosetta.core.indexed_structure_store
      • rosetta.core.indexed_structure_store._core_indexed_structure_store_
    • rosetta.core.init
      • rosetta.core.init._core_init_
    • rosetta.core.io
      • rosetta.core.io._core_io_
      • rosetta.core.io.carbohydrates
        • rosetta.core.io.carbohydrates._core_io_carbohydrates_
      • rosetta.core.io.ddg
        • rosetta.core.io.ddg._core_io_ddg_
      • rosetta.core.io.pdb
        • rosetta.core.io.pdb._core_io_pdb_
      • rosetta.core.io.raw_data
        • rosetta.core.io.raw_data._core_io_raw_data_
      • rosetta.core.io.rna
        • rosetta.core.io.rna._core_io_rna_
      • rosetta.core.io.sequence_comparation
        • rosetta.core.io.sequence_comparation._core_io_sequence_comparation_
      • rosetta.core.io.serialization
        • rosetta.core.io.serialization._core_io_serialization_
      • rosetta.core.io.silent
        • rosetta.core.io.silent._core_io_silent_
    • rosetta.core.kinematics
      • rosetta.core.kinematics._core_kinematics_
      • rosetta.core.kinematics.tree
        • rosetta.core.kinematics.tree._core_kinematics_tree_
    • rosetta.core.optimization
      • rosetta.core.optimization._core_optimization_
      • rosetta.core.optimization.symmetry
        • rosetta.core.optimization.symmetry._core_optimization_symmetry_
    • rosetta.core.pack
      • rosetta.core.pack._core_pack_
      • rosetta.core.pack.annealer
        • rosetta.core.pack.annealer._core_pack_annealer_
      • rosetta.core.pack.dunbrack
        • rosetta.core.pack.dunbrack._core_pack_dunbrack_
        • rosetta.core.pack.dunbrack.cenrot
          • rosetta.core.pack.dunbrack.cenrot._core_pack_dunbrack_cenrot_
      • rosetta.core.pack.interaction_graph
        • rosetta.core.pack.interaction_graph._core_pack_interaction_graph_
      • rosetta.core.pack.rotamer_set
        • rosetta.core.pack.rotamer_set._core_pack_rotamer_set_
        • rosetta.core.pack.rotamer_set.symmetry
          • rosetta.core.pack.rotamer_set.symmetry._core_pack_rotamer_set_symmetry_
      • rosetta.core.pack.scmin
        • rosetta.core.pack.scmin._core_pack_scmin_'
      • rosetta.core.pack.task
        • rosetta.core.pack.task._core_pack_task_
        • rosetta.core.pack.task.operation
          • rosetta.core.pack.task.operation._core_pack_task_operation_
          • rosetta.core.pack.task.operation.util
            • rosetta.core.pack.task.operation.util._core_pack_task_operation_util_
        • rosetta.core.pack.task.residue_selector
          • rosetta.core.pack.task.residue_selector._core_pack_task_residue_selector_
        • rosetta.core.pack.task.rna
          • rosetta.core.pack.task.rna._core_pack_task_rna_
    • rosetta.core.pose
      • rosetta.core.pose._core_pose_
      • rosetta.core.pose.carbohydrates
        • rosetta.core.pose.carbohydrates._core_pose_carbohydrates_
      • rosetta.core.pose.copydofs
        • rosetta.core.pose.copydofs._core_pose_copydofs_
      • rosetta.core.pose.datacache
        • rosetta.core.pose.datacache._core_pose_datacache_
      • rosetta.core.pose.full_model_info
        • rosetta.core.pose.full_model_info._core_pose_full_model_info_
      • rosetta.core.pose.metrics
        • rosetta.core.pose.metrics._core_pose_metrics_
        • rosetta.core.pose.metrics.simple_calculators
          • rosetta.core.pose.metrics.simple_calculators._core_pose_metrics_simple_calculators_
      • rosetta.core.pose.motif
        • rosetta.core.pose.motif._core_pose_motif_
      • rosetta.core.pose.ncbb
        • rosetta.core.pose.ncbb._core_pose_ncbb_
      • rosetta.core.pose.rna
        • rosetta.core.pose.rna._core_pose_rna_
      • rosetta.core.pose.signals
        • rosetta.core.pose.signals._core_pose_signals_
      • rosetta.core.pose.symmetry
        • rosetta.core.pose.symmetry._core_pose_symmetry_
    • rosetta.core.scoring
      • rosetta.core.scoring._core_scoring_
      • rosetta.core.scoring.bin_transitions
        • rosetta.core.scoring.bin_transitions._core_scoring_bin_transitions_
      • rosetta.core.scoring.carbohydrates
        • rosetta.core.scoring.carbohydrates._core_scoring_carbohydrates_
      • rosetta.core.scoring.carbon_hbonds
        • rosetta.core.scoring.carbon_hbonds._core_scoring_carbon_hbonds_
      • rosetta.core.scoring.constraints
        • rosetta.core.scoring.constraints._core_scoring_constraints_
      • rosetta.core.scoring.cryst
        • rosetta.core.scoring.cryst._core_scoring_cryst_
      • rosetta.core.scoring.custom_pair_distance
        • rosetta.core.scoring.custom_pair_distance._core_scoring_custom_pair_distance_
      • rosetta.core.scoring.disulfides
        • rosetta.core.scoring.disulfides._core_scoring_disulfides_
      • rosetta.core.scoring.dna
        • rosetta.core.scoring.dna._core_scoring_dna_
      • rosetta.core.scoring.dssp
        • rosetta.core.scoring.dssp._core_scoring_dssp_
      • rosetta.core.scoring.elec
        • rosetta.core.scoring.elec._core_scoring_elec_
      • rosetta.core.scoring.electron_density
        • rosetta.core.scoring.electron_density._core_scoring_electron_density_
      • rosetta.core.scoring.electron_density_atomwise
        • rosetta.core.scoring.electron_density_atomwise._core_scoring_electron_density_atomwise_
      • rosetta.core.scoring.etable
        • rosetta.core.scoring.etable._core_scoring_etable_
        • rosetta.core.scoring.etable.coulomb
          • rosetta.core.scoring.etable.coulomb._core_scoring_etable_coulomb_
        • rosetta.core.scoring.etable.count_pair
          • rosetta.core.scoring.etable.count_pair._core_scoring_etable_count_pair_
        • rosetta.core.scoring.etable.etrie
          • rosetta.core.scoring.etable.etrie._core_scoring_etable_etrie_
      • rosetta.core.scoring.facts
        • rosetta.core.scoring.facts._core_scoring_facts_
      • rosetta.core.scoring.fiber_diffraction
        • rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
      • rosetta.core.scoring.func
        • rosetta.core.scoring.func._core_scoring_func_
      • rosetta.core.scoring.geometric_solvation
        • rosetta.core.scoring.geometric_solvation._core_scoring_geometric_solvation_
      • rosetta.core.scoring.hackaro
        • rosetta.core.scoring.hackaro._core_scoring_hackaro_
      • rosetta.core.scoring.hbonds
        • rosetta.core.scoring.hbonds._core_scoring_hbonds_
        • rosetta.core.scoring.hbonds.hbtrie
          • rosetta.core.scoring.hbonds.hbtrie._core_scoring_hbonds_hbtrie_
      • rosetta.core.scoring.interface_
        • rosetta.core.scoring.interface_._core_scoring_interface__
      • rosetta.core.scoring.loop_graph
        • rosetta.core.scoring.loop_graph._core_scoring_loop_graph_
      • rosetta.core.scoring.memb_etable
        • rosetta.core.scoring.memb_etable._core_scoring_memb_etable_
      • rosetta.core.scoring.membrane
        • rosetta.core.scoring.membrane._core_scoring_membrane_
      • rosetta.core.scoring.methods
        • rosetta.core.scoring.methods._core_scoring_methods_
        • rosetta.core.scoring.methods.carbohydrates
          • rosetta.core.scoring.methods.carbohydrates._core_scoring_methods_carbohydrates_
        • rosetta.core.scoring.methods.dfire
          • rosetta.core.scoring.methods.dfire._core_scoring_methods_dfire_
        • rosetta.core.scoring.methods.vall_lookback
          • rosetta.core.scoring.methods.vall_lookback._core_scoring_methods_vall_lookback_
      • rosetta.core.scoring.mm
        • rosetta.core.scoring.mm._core_scoring_mm_
        • rosetta.core.scoring.mm.mmtrie
          • rosetta.core.scoring.mm.mmtrie._core_scoring_mm_mmtrie_
      • rosetta.core.scoring.motif
        • rosetta.core.scoring.motif._core_scoring_motif_
      • rosetta.core.scoring.nv
        • rosetta.core.scoring.nv._core_scoring_nv_
      • rosetta.core.scoring.orbitals
        • rosetta.core.scoring.orbitals._core_scoring_orbitals_
      • rosetta.core.scoring.packing
        • rosetta.core.scoring.packing._core_scoring_packing_
      • rosetta.core.scoring.packstat
        • rosetta.core.scoring.packstat._core_scoring_packstat_
      • rosetta.core.scoring.rna
        • rosetta.core.scoring.rna._core_scoring_rna_
        • rosetta.core.scoring.rna.chemical_shift
          • rosetta.core.scoring.rna.chemical_shift._core_scoring_rna_chemical_shift_
        • rosetta.core.scoring.rna.data
          • rosetta.core.scoring.rna.data._core_scoring_rna_data_
      • rosetta.core.scoring.sasa
        • rosetta.core.scoring.sasa._core_scoring_sasa_
      • rosetta.core.scoring.saxs
        • rosetta.core.scoring.saxs._core_scoring_saxs_
      • rosetta.core.scoring.sc
        • rosetta.core.scoring.sc._core_scoring_sc_
      • rosetta.core.scoring.solid_surface
        • rosetta.core.scoring.solid_surface._core_scoring_solid_surface_
      • rosetta.core.scoring.sym_e
        • rosetta.core.scoring.sym_e._core_scoring_sym_e_
      • rosetta.core.scoring.symmetry
        • rosetta.core.scoring.symmetry._core_scoring_symmetry_
      • rosetta.core.scoring.trie
        • rosetta.core.scoring.trie._core_scoring_trie_
      • rosetta.core.scoring.vdwaals
        • rosetta.core.scoring.vdwaals._core_scoring_vdwaals_'
    • rosetta.core.sequence
      • rosetta.core.sequence._core_sequence_
    • rosetta.core.util
      • rosetta.core.util._core_util_
  • rosetta.logging_support
  • rosetta.numeric
    • rosetta.numeric._numeric_
    • rosetta.numeric.alignment
      • rosetta.numeric.alignment._numeric_alignment_
    • rosetta.numeric.coordinate_fitting
      • rosetta.numeric.coordinate_fitting._numeric_coordinate_fitting_
    • rosetta.numeric.crick_equations
      • rosetta.numeric.crick_equations._numeric_crick_equations_
    • rosetta.numeric.deriv
      • rosetta.numeric.deriv._numeric_deriv_
    • rosetta.numeric.expression_parser
      • rosetta.numeric.expression_parser._numeric_expression_parser_
    • rosetta.numeric.fourier
      • rosetta.numeric.fourier._numeric_fourier_
    • rosetta.numeric.geometry
      • rosetta.numeric.geometry._numeric_geometry_
      • rosetta.numeric.geometry.hashing
        • rosetta.numeric.geometry.hashing._numeric_geometry_hashing_
    • rosetta.numeric.histograms
      • rosetta.numeric.histograms._numeric_histograms_
    • rosetta.numeric.internal
      • rosetta.numeric.internal._numeric_internal_
    • rosetta.numeric.interpolation
      • rosetta.numeric.interpolation._numeric_interpolation_
      • rosetta.numeric.interpolation.full
        • rosetta.numeric.interpolation.full._numeric_interpolation_full_
      • rosetta.numeric.interpolation.periodic_range
        • rosetta.numeric.interpolation.periodic_range._numeric_interpolation_periodic_range_
        • rosetta.numeric.interpolation.periodic_range.full
          • rosetta.numeric.interpolation.periodic_range.full._numeric_interpolation_periodic_range_full_
        • rosetta.numeric.interpolation.periodic_range.half
          • rosetta.numeric.interpolation.periodic_range.half._numeric_interpolation_periodic_range_half_
        • rosetta.numeric.interpolation.periodic_range.periodic_value
          • rosetta.numeric.interpolation.periodic_range.periodic_value._numeric_interpolation_periodic_range_periodic_value_
          • rosetta.numeric.interpolation.periodic_range.periodic_value.full
            • rosetta.numeric.interpolation.periodic_range.periodic_value.full._numeric_interpolation_periodic_range_periodic_value_full_
          • rosetta.numeric.interpolation.periodic_range.periodic_value.half
            • rosetta.numeric.interpolation.periodic_range.periodic_value.half._numeric_interpolation_periodic_range_periodic_value_half_
      • rosetta.numeric.interpolation.spline
        • rosetta.numeric.interpolation.spline._numeric_interpolation_spline_
    • rosetta.numeric.kdtree
      • rosetta.numeric.kdtree._numeric_kdtree_
    • rosetta.numeric.kinematic_closure
      • rosetta.numeric.kinematic_closure._numeric_kinematic_closure_
    • rosetta.numeric.linear_algebra
      • rosetta.numeric.linear_algebra._numeric_linear_algebra_
    • rosetta.numeric.model_quality
      • rosetta.numeric.model_quality._numeric_model_quality_
    • rosetta.numeric.nls
      • rosetta.numeric.nls._numeric_nls_
    • rosetta.numeric.random
      • rosetta.numeric.random._numeric_random_
    • rosetta.numeric.statistics
      • rosetta.numeric.statistics._numeric_statistics_
  • rosetta.protocols
    • rosetta.protocols.RotamerDump
      • rosetta.protocols.RotamerDump._protocols_RotamerDump_
    • rosetta.protocols._protocols_
    • rosetta.protocols.abinitio
      • rosetta.protocols.abinitio._protocols_abinitio_
      • rosetta.protocols.abinitio.abscript
        • rosetta.protocols.abinitio.abscript._protocols_abinitio_abscript_
    • rosetta.protocols.analysis
      • rosetta.protocols.analysis._protocols_analysis_
    • rosetta.protocols.anchored_design
      • rosetta.protocols.anchored_design._protocols_anchored_design_
    • rosetta.protocols.antibody
      • rosetta.protocols.antibody._protocols_antibody_
      • rosetta.protocols.antibody.clusters
        • rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
      • rosetta.protocols.antibody.constraints
        • rosetta.protocols.antibody.constraints._protocols_antibody_constraints_
      • rosetta.protocols.antibody.database
        • rosetta.protocols.antibody.database._protocols_antibody_database_
      • rosetta.protocols.antibody.design
        • rosetta.protocols.antibody.design._protocols_antibody_design_
      • rosetta.protocols.antibody.snugdock
        • rosetta.protocols.antibody.snugdock._protocols_antibody_snugdock_
      • rosetta.protocols.antibody.task_operations
        • rosetta.protocols.antibody.task_operations._protocols_antibody_task_operations_
    • rosetta.protocols.antibody_legacy
      • rosetta.protocols.antibody_legacy._protocols_antibody_legacy_
    • rosetta.protocols.backrub
      • rosetta.protocols.backrub._protocols_backrub_
    • rosetta.protocols.boinc
      • rosetta.protocols.boinc._protocols_boinc_
    • rosetta.protocols.branch_angle
      • rosetta.protocols.branch_angle._protocols_branch_angle_
    • rosetta.protocols.canonical_sampling
      • rosetta.protocols.canonical_sampling._protocols_canonical_sampling_
      • rosetta.protocols.canonical_sampling.mc_convergence_checks
        • rosetta.protocols.canonical_sampling.mc_convergence_checks._protocols_canonical_sampling_mc_convergence_checks_
    • rosetta.protocols.cartesian
      • rosetta.protocols.cartesian._protocols_cartesian_
    • rosetta.protocols.checkpoint
      • rosetta.protocols.checkpoint._protocols_checkpoint_
    • rosetta.protocols.cluster
      • rosetta.protocols.cluster._protocols_cluster_
    • rosetta.protocols.coarse_rna
      • rosetta.protocols.coarse_rna._protocols_coarse_rna_'
    • rosetta.protocols.comparative_modeling
      • rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
      • rosetta.protocols.comparative_modeling.features
        • rosetta.protocols.comparative_modeling.features._protocols_comparative_modeling_features_
    • rosetta.protocols.constraints_additional
      • rosetta.protocols.constraints_additional._protocols_constraints_additional_
    • rosetta.protocols.contact_map
      • rosetta.protocols.contact_map._protocols_contact_map_
    • rosetta.protocols.cryst
      • rosetta.protocols.cryst._protocols_cryst_
    • rosetta.protocols.cyclic_peptide
      • rosetta.protocols.cyclic_peptide._protocols_cyclic_peptide_
    • rosetta.protocols.ddg
      • rosetta.protocols.ddg._protocols_ddg_
    • rosetta.protocols.denovo_design
      • rosetta.protocols.denovo_design._protocols_denovo_design_
      • rosetta.protocols.denovo_design.filters
        • rosetta.protocols.denovo_design.filters._protocols_denovo_design_filters_
      • rosetta.protocols.denovo_design.movers
        • rosetta.protocols.denovo_design.movers._protocols_denovo_design_movers_
    • rosetta.protocols.design_opt
      • rosetta.protocols.design_opt._protocols_design_opt_
    • rosetta.protocols.dna
      • rosetta.protocols.dna._protocols_dna_
    • rosetta.protocols.docking
      • rosetta.protocols.docking._protocols_docking_
      • rosetta.protocols.docking.membrane
        • rosetta.protocols.docking.membrane._protocols_docking_membrane_
      • rosetta.protocols.docking.stateless
        • rosetta.protocols.docking.stateless._protocols_docking_stateless_
    • rosetta.protocols.domain_assembly
      • rosetta.protocols.domain_assembly._protocols_domain_assembly_
    • rosetta.protocols.electron_density
      • rosetta.protocols.electron_density._protocols_electron_density_
    • rosetta.protocols.elscripts
      • rosetta.protocols.elscripts._protocols_elscripts_
      • rosetta.protocols.elscripts.modules
        • rosetta.protocols.elscripts.modules._protocols_elscripts_modules_
    • rosetta.protocols.environment
      • rosetta.protocols.environment._protocols_environment_
      • rosetta.protocols.environment.claims
        • rosetta.protocols.environment.claims._protocols_environment_claims_
    • rosetta.protocols.enzdes
      • rosetta.protocols.enzdes._protocols_enzdes_'
    • rosetta.protocols.evaluation
      • rosetta.protocols.evaluation._protocols_evaluation_
    • rosetta.protocols.farna
      • rosetta.protocols.farna._protocols_farna_
    • rosetta.protocols.features
      • rosetta.protocols.features._protocols_features_
      • rosetta.protocols.features.helixAssembly
        • rosetta.protocols.features.helixAssembly._protocols_features_helixAssembly_
      • rosetta.protocols.features.strand_assembly
        • rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
    • rosetta.protocols.fibril
      • rosetta.protocols.fibril._protocols_fibril_
    • rosetta.protocols.filters
      • rosetta.protocols.filters._protocols_filters_
    • rosetta.protocols.fldsgn
      • rosetta.protocols.fldsgn._protocols_fldsgn_
      • rosetta.protocols.fldsgn.filters
        • rosetta.protocols.fldsgn.filters._protocols_fldsgn_filters_
      • rosetta.protocols.fldsgn.potentials
        • rosetta.protocols.fldsgn.potentials._protocols_fldsgn_potentials_
        • rosetta.protocols.fldsgn.potentials.sspot
          • rosetta.protocols.fldsgn.potentials.sspot._protocols_fldsgn_potentials_sspot_
      • rosetta.protocols.fldsgn.topology
        • rosetta.protocols.fldsgn.topology._protocols_fldsgn_topology_
    • rosetta.protocols.flexpack
      • rosetta.protocols.flexpack._protocols_flexpack_
      • rosetta.protocols.flexpack.annealer
        • rosetta.protocols.flexpack.annealer._protocols_flexpack_annealer_
      • rosetta.protocols.flexpack.interaction_graph
        • rosetta.protocols.flexpack.interaction_graph._protocols_flexpack_interaction_graph_
      • rosetta.protocols.flexpack.rotamer_set
        • rosetta.protocols.flexpack.rotamer_set._protocols_flexpack_rotamer_set_
    • rosetta.protocols.flexpep_docking
      • rosetta.protocols.flexpep_docking._protocols_flexpep_docking_
    • rosetta.protocols.floppy_tail
      • rosetta.protocols.floppy_tail._protocols_floppy_tail_
    • rosetta.protocols.flxbb
      • rosetta.protocols.flxbb._protocols_flxbb_
    • rosetta.protocols.forge
      • rosetta.protocols.forge._protocols_forge_
      • rosetta.protocols.forge.build
        • rosetta.protocols.forge.build._protocols_forge_build_'
        • rosetta.protocols.forge.build.SegmentInsertConnectionScheme
          • rosetta.protocols.forge.build.SegmentInsertConnectionScheme._protocols_forge_build_SegmentInsertConnectionScheme_
      • rosetta.protocols.forge.components
        • rosetta.protocols.forge.components._protocols_forge_components_
      • rosetta.protocols.forge.constraints
        • rosetta.protocols.forge.constraints._protocols_forge_constraints_'
      • rosetta.protocols.forge.methods
        • rosetta.protocols.forge.methods._protocols_forge_methods_
      • rosetta.protocols.forge.remodel
        • rosetta.protocols.forge.remodel._protocols_forge_remodel_'
    • rosetta.protocols.frag_picker
      • rosetta.protocols.frag_picker._protocols_frag_picker_
      • rosetta.protocols.frag_picker.nonlocal
        • rosetta.protocols.frag_picker.nonlocal._protocols_frag_picker_nonlocal_
      • rosetta.protocols.frag_picker.quota
        • rosetta.protocols.frag_picker.quota._protocols_frag_picker_quota_
      • rosetta.protocols.frag_picker.scores
        • rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
    • rosetta.protocols.frags
      • rosetta.protocols.frags._protocols_frags_
    • rosetta.protocols.generalized_kinematic_closure
      • rosetta.protocols.generalized_kinematic_closure._protocols_generalized_kinematic_closure_
      • rosetta.protocols.generalized_kinematic_closure.filter
        • rosetta.protocols.generalized_kinematic_closure.filter._protocols_generalized_kinematic_closure_filter_
      • rosetta.protocols.generalized_kinematic_closure.perturber
        • rosetta.protocols.generalized_kinematic_closure.perturber._protocols_generalized_kinematic_closure_perturber_
      • rosetta.protocols.generalized_kinematic_closure.selector
        • rosetta.protocols.generalized_kinematic_closure.selector._protocols_generalized_kinematic_closure_selector_
    • rosetta.protocols.genetic_algorithm
      • rosetta.protocols.genetic_algorithm._protocols_genetic_algorithm_
    • rosetta.protocols.grafting
      • rosetta.protocols.grafting._protocols_grafting_
      • rosetta.protocols.grafting.simple_movers
        • rosetta.protocols.grafting.simple_movers._protocols_grafting_simple_movers_
    • rosetta.protocols.helical_bundle
      • rosetta.protocols.helical_bundle._protocols_helical_bundle_
      • rosetta.protocols.helical_bundle.parameters
        • rosetta.protocols.helical_bundle.parameters._protocols_helical_bundle_parameters_
    • rosetta.protocols.helix_capper
      • rosetta.protocols.helix_capper._protocols_helix_capper_
    • rosetta.protocols.hotspot_hashing
      • rosetta.protocols.hotspot_hashing._protocols_hotspot_hashing_
      • rosetta.protocols.hotspot_hashing.movers
        • rosetta.protocols.hotspot_hashing.movers._protocols_hotspot_hashing_movers_
    • rosetta.protocols.hybridization
      • rosetta.protocols.hybridization._protocols_hybridization_
    • rosetta.protocols.idealize
      • rosetta.protocols.idealize._protocols_idealize_
    • rosetta.protocols.indexed_structure_store
      • rosetta.protocols.indexed_structure_store._protocols_indexed_structure_store_
      • rosetta.protocols.indexed_structure_store.filters
        • rosetta.protocols.indexed_structure_store.filters._protocols_indexed_structure_store_filters_
    • rosetta.protocols.init
      • rosetta.protocols.init._protocols_init_
    • rosetta.protocols.inputter
      • rosetta.protocols.inputter._protocols_inputter_
    • rosetta.protocols.interface
      • rosetta.protocols.interface._protocols_interface_
    • rosetta.protocols.jd2
      • rosetta.protocols.jd2._protocols_jd2_
      • rosetta.protocols.jd2.archive
        • rosetta.protocols.jd2.archive._protocols_jd2_archive_
      • rosetta.protocols.jd2.parser
        • rosetta.protocols.jd2.parser._protocols_jd2_parser_
    • rosetta.protocols.jobdist
      • rosetta.protocols.jobdist._protocols_jobdist_
    • rosetta.protocols.jumping
      • rosetta.protocols.jumping._protocols_jumping_
    • rosetta.protocols.kinematic_closure
      • rosetta.protocols.kinematic_closure._protocols_kinematic_closure_
      • rosetta.protocols.kinematic_closure.perturbers
        • rosetta.protocols.kinematic_closure.perturbers._protocols_kinematic_closure_perturbers_
      • rosetta.protocols.kinematic_closure.pivot_pickers
        • rosetta.protocols.kinematic_closure.pivot_pickers._protocols_kinematic_closure_pivot_pickers_
      • rosetta.protocols.kinematic_closure.solution_pickers
        • rosetta.protocols.kinematic_closure.solution_pickers._protocols_kinematic_closure_solution_pickers_
    • rosetta.protocols.kinmatch
      • rosetta.protocols.kinmatch._protocols_kinmatch_
    • rosetta.protocols.ligand_docking
      • rosetta.protocols.ligand_docking._protocols_ligand_docking_
      • rosetta.protocols.ligand_docking.ligand_options
        • rosetta.protocols.ligand_docking.ligand_options._protocols_ligand_docking_ligand_options_
      • rosetta.protocols.ligand_docking.rdf
        • rosetta.protocols.ligand_docking.rdf._protocols_ligand_docking_rdf_
    • rosetta.protocols.loop_build
      • rosetta.protocols.loop_build._protocols_loop_build_
    • rosetta.protocols.loop_modeling
      • rosetta.protocols.loop_modeling._protocols_loop_modeling_
      • rosetta.protocols.loop_modeling.refiners
        • rosetta.protocols.loop_modeling.refiners._protocols_loop_modeling_refiners_
      • rosetta.protocols.loop_modeling.samplers
        • rosetta.protocols.loop_modeling.samplers._protocols_loop_modeling_samplers_
      • rosetta.protocols.loop_modeling.utilities
        • rosetta.protocols.loop_modeling.utilities._protocols_loop_modeling_utilities_
    • rosetta.protocols.loophash
      • rosetta.protocols.loophash._protocols_loophash_
    • rosetta.protocols.loops
      • rosetta.protocols.loops._protocols_loops_
      • rosetta.protocols.loops.loop_closure
        • rosetta.protocols.loops.loop_closure._protocols_loops_loop_closure_
        • rosetta.protocols.loops.loop_closure.ccd
          • rosetta.protocols.loops.loop_closure.ccd._protocols_loops_loop_closure_ccd_
        • rosetta.protocols.loops.loop_closure.kinematic_closure
          • rosetta.protocols.loops.loop_closure.kinematic_closure._protocols_loops_loop_closure_kinematic_closure_
      • rosetta.protocols.loops.loop_closure'
        • rosetta.protocols.loops.loop_closure'.ccd
        • rosetta.protocols.loops.loop_closure'.kinematic_closure
      • rosetta.protocols.loops.loop_mover
        • rosetta.protocols.loops.loop_mover._protocols_loops_loop_mover_
        • rosetta.protocols.loops.loop_mover.perturb
          • rosetta.protocols.loops.loop_mover.perturb._protocols_loops_loop_mover_perturb_
        • rosetta.protocols.loops.loop_mover.refine
          • rosetta.protocols.loops.loop_mover.refine._protocols_loops_loop_mover_refine_
      • rosetta.protocols.loops.loop_mover'
        • rosetta.protocols.loops.loop_mover'.perturb
        • rosetta.protocols.loops.loop_mover'.refine
      • rosetta.protocols.loops.loops_definers
        • rosetta.protocols.loops.loops_definers._protocols_loops_loops_definers_
    • rosetta.protocols.make_rot_lib
      • rosetta.protocols.make_rot_lib._protocols_make_rot_lib_
    • rosetta.protocols.match
      • rosetta.protocols.match._protocols_match_
      • rosetta.protocols.match.downstream
        • rosetta.protocols.match.downstream._protocols_match_downstream_
      • rosetta.protocols.match.output
        • rosetta.protocols.match.output._protocols_match_output_
      • rosetta.protocols.match.upstream
        • rosetta.protocols.match.upstream._protocols_match_upstream_
    • rosetta.protocols.matdes
      • rosetta.protocols.matdes._protocols_matdes_
    • rosetta.protocols.md
      • rosetta.protocols.md._protocols_md_
    • rosetta.protocols.medal
      • rosetta.protocols.medal._protocols_medal_
    • rosetta.protocols.membrane
      • rosetta.protocols.membrane._protocols_membrane_
      • rosetta.protocols.membrane.geometry
        • rosetta.protocols.membrane.geometry._protocols_membrane_geometry_
      • rosetta.protocols.membrane.io
        • rosetta.protocols.membrane.io._protocols_membrane_io_
      • rosetta.protocols.membrane.relax
        • rosetta.protocols.membrane.relax._protocols_membrane_relax_
      • rosetta.protocols.membrane.symmetry
        • rosetta.protocols.membrane.symmetry._protocols_membrane_symmetry_
      • rosetta.protocols.membrane.visualize
        • rosetta.protocols.membrane.visualize._protocols_membrane_visualize_
    • rosetta.protocols.metal_interface
      • rosetta.protocols.metal_interface._protocols_metal_interface_
    • rosetta.protocols.motif_grafting
      • rosetta.protocols.motif_grafting._protocols_motif_grafting_
      • rosetta.protocols.motif_grafting.movers
        • rosetta.protocols.motif_grafting.movers._protocols_motif_grafting_movers_
    • rosetta.protocols.motifs
      • rosetta.protocols.motifs._protocols_motifs_
    • rosetta.protocols.moves
      • rosetta.protocols.moves._protocols_moves_
      • rosetta.protocols.moves.mc_convergence_checks
        • rosetta.protocols.moves.mc_convergence_checks._protocols_moves_mc_convergence_checks_
    • rosetta.protocols.mpi_refinement
      • rosetta.protocols.mpi_refinement._protocols_mpi_refinement_
    • rosetta.protocols.multistate_design
      • rosetta.protocols.multistate_design._protocols_multistate_design_'
    • rosetta.protocols.ncbb
      • rosetta.protocols.ncbb._protocols_ncbb_
      • rosetta.protocols.ncbb.oop
        • rosetta.protocols.ncbb.oop._protocols_ncbb_oop_
    • rosetta.protocols.neighbor
      • rosetta.protocols.neighbor._protocols_neighbor_
    • rosetta.protocols.noesy_assign
      • rosetta.protocols.noesy_assign._protocols_noesy_assign_
    • rosetta.protocols.nonlocal
      • rosetta.protocols.nonlocal._protocols_nonlocal_
    • rosetta.protocols.normalmode
      • rosetta.protocols.normalmode._protocols_normalmode_
    • rosetta.protocols.optimize_weights
      • rosetta.protocols.optimize_weights._protocols_optimize_weights_
    • rosetta.protocols.outputter
      • rosetta.protocols.outputter._protocols_outputter_
    • rosetta.protocols.pack_daemon
      • rosetta.protocols.pack_daemon._protocols_pack_daemon_
    • rosetta.protocols.pb_potential
      • rosetta.protocols.pb_potential._protocols_pb_potential_
    • rosetta.protocols.pmut_scan
      • rosetta.protocols.pmut_scan._protocols_pmut_scan_
    • rosetta.protocols.pockets
      • rosetta.protocols.pockets._protocols_pockets_
    • rosetta.protocols.pose_reporters
      • rosetta.protocols.pose_reporters._protocols_pose_reporters_'
    • rosetta.protocols.pose_selectors
      • rosetta.protocols.pose_selectors._protocols_pose_selectors_'
    • rosetta.protocols.protein_interface_design
      • rosetta.protocols.protein_interface_design._protocols_protein_interface_design_
      • rosetta.protocols.protein_interface_design.filters
        • rosetta.protocols.protein_interface_design.filters._protocols_protein_interface_design_filters_
      • rosetta.protocols.protein_interface_design.movers
        • rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
    • rosetta.protocols.qsar
      • rosetta.protocols.qsar._protocols_qsar_
      • rosetta.protocols.qsar.scoring_grid
        • rosetta.protocols.qsar.scoring_grid._protocols_qsar_scoring_grid_
    • rosetta.protocols.rbsegment_relax
      • rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
    • rosetta.protocols.relax
      • rosetta.protocols.relax._protocols_relax_
      • rosetta.protocols.relax.membrane
        • rosetta.protocols.relax.membrane._protocols_relax_membrane_
    • rosetta.protocols.rigid
      • rosetta.protocols.rigid._protocols_rigid_
    • rosetta.protocols.rosetta_scripts
      • rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
    • rosetta.protocols.rotamer_recovery
      • rosetta.protocols.rotamer_recovery._protocols_rotamer_recovery_
    • rosetta.protocols.rpc
      • rosetta.protocols.rpc._protocols_rpc_
    • rosetta.protocols.sasa_scores
      • rosetta.protocols.sasa_scores._protocols_sasa_scores_
    • rosetta.protocols.scoring
      • rosetta.protocols.scoring._protocols_scoring_
      • rosetta.protocols.scoring.methods
        • rosetta.protocols.scoring.methods._protocols_scoring_methods_
        • rosetta.protocols.scoring.methods.pcs
          • rosetta.protocols.scoring.methods.pcs._protocols_scoring_methods_pcs_
        • rosetta.protocols.scoring.methods.pcs2
          • rosetta.protocols.scoring.methods.pcs2._protocols_scoring_methods_pcs2_
        • rosetta.protocols.scoring.methods.pcsTs1
          • rosetta.protocols.scoring.methods.pcsTs1._protocols_scoring_methods_pcsTs1_
        • rosetta.protocols.scoring.methods.pcsTs2
          • rosetta.protocols.scoring.methods.pcsTs2._protocols_scoring_methods_pcsTs2_
        • rosetta.protocols.scoring.methods.pcsTs3
          • rosetta.protocols.scoring.methods.pcsTs3._protocols_scoring_methods_pcsTs3_
        • rosetta.protocols.scoring.methods.pcsTs4
          • rosetta.protocols.scoring.methods.pcsTs4._protocols_scoring_methods_pcsTs4_
        • rosetta.protocols.scoring.methods.saxs
          • rosetta.protocols.scoring.methods.saxs._protocols_scoring_methods_saxs_
    • rosetta.protocols.seeded_abinitio
      • rosetta.protocols.seeded_abinitio._protocols_seeded_abinitio_
    • rosetta.protocols.sic_dock
      • rosetta.protocols.sic_dock._protocols_sic_dock_
      • rosetta.protocols.sic_dock.scores
        • rosetta.protocols.sic_dock.scores._protocols_sic_dock_scores_
    • rosetta.protocols.simple_filters
      • rosetta.protocols.simple_filters._protocols_simple_filters_
    • rosetta.protocols.simple_moves
      • rosetta.protocols.simple_moves._protocols_simple_moves_
      • rosetta.protocols.simple_moves.asym_fold_and_dock
        • rosetta.protocols.simple_moves.asym_fold_and_dock._protocols_simple_moves_asym_fold_and_dock_
      • rosetta.protocols.simple_moves.bin_transitions
        • rosetta.protocols.simple_moves.bin_transitions._protocols_simple_moves_bin_transitions_
      • rosetta.protocols.simple_moves.chiral
        • rosetta.protocols.simple_moves.chiral._protocols_simple_moves_chiral_
      • rosetta.protocols.simple_moves.hbs
        • rosetta.protocols.simple_moves.hbs._protocols_simple_moves_hbs_
      • rosetta.protocols.simple_moves.oop
        • rosetta.protocols.simple_moves.oop._protocols_simple_moves_oop_
      • rosetta.protocols.simple_moves.rational_mc
        • rosetta.protocols.simple_moves.rational_mc._protocols_simple_moves_rational_mc_
      • rosetta.protocols.simple_moves.sidechain_moves
        • rosetta.protocols.simple_moves.sidechain_moves._protocols_simple_moves_sidechain_moves_
      • rosetta.protocols.simple_moves.symmetry
        • rosetta.protocols.simple_moves.symmetry._protocols_simple_moves_symmetry_
    • rosetta.protocols.sparta
      • rosetta.protocols.sparta._protocols_sparta_
    • rosetta.protocols.ss_prediction
      • rosetta.protocols.ss_prediction._protocols_ss_prediction_
    • rosetta.protocols.star
      • rosetta.protocols.star._protocols_star_
    • rosetta.protocols.stepwise
      • rosetta.protocols.stepwise._protocols_stepwise_
      • rosetta.protocols.stepwise.legacy
        • rosetta.protocols.stepwise.legacy._protocols_stepwise_legacy_
        • rosetta.protocols.stepwise.legacy.modeler
          • rosetta.protocols.stepwise.legacy.modeler._protocols_stepwise_legacy_modeler_
          • rosetta.protocols.stepwise.legacy.modeler.protein
            • rosetta.protocols.stepwise.legacy.modeler.protein._protocols_stepwise_legacy_modeler_protein_
          • rosetta.protocols.stepwise.legacy.modeler.rna
            • rosetta.protocols.stepwise.legacy.modeler.rna._protocols_stepwise_legacy_modeler_rna_'
            • rosetta.protocols.stepwise.legacy.modeler.rna.connection
              • rosetta.protocols.stepwise.legacy.modeler.rna.connection._protocols_stepwise_legacy_modeler_rna_connection_
        • rosetta.protocols.stepwise.legacy.screener
          • rosetta.protocols.stepwise.legacy.screener._protocols_stepwise_legacy_screener_'
      • rosetta.protocols.stepwise.modeler
        • rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
        • rosetta.protocols.stepwise.modeler.align
          • rosetta.protocols.stepwise.modeler.align._protocols_stepwise_modeler_align_
        • rosetta.protocols.stepwise.modeler.movemap
          • rosetta.protocols.stepwise.modeler.movemap._protocols_stepwise_modeler_movemap_
        • rosetta.protocols.stepwise.modeler.options
          • rosetta.protocols.stepwise.modeler.options._protocols_stepwise_modeler_options_
        • rosetta.protocols.stepwise.modeler.packer
          • rosetta.protocols.stepwise.modeler.packer._protocols_stepwise_modeler_packer_
        • rosetta.protocols.stepwise.modeler.polar_hydrogens
          • rosetta.protocols.stepwise.modeler.polar_hydrogens._protocols_stepwise_modeler_polar_hydrogens_
        • rosetta.protocols.stepwise.modeler.precomputed
          • rosetta.protocols.stepwise.modeler.precomputed._protocols_stepwise_modeler_precomputed_
        • rosetta.protocols.stepwise.modeler.protein
          • rosetta.protocols.stepwise.modeler.protein._protocols_stepwise_modeler_protein_
          • rosetta.protocols.stepwise.modeler.protein.beta
            • rosetta.protocols.stepwise.modeler.protein.beta._protocols_stepwise_modeler_protein_beta_
          • rosetta.protocols.stepwise.modeler.protein.checker
            • rosetta.protocols.stepwise.modeler.protein.checker._protocols_stepwise_modeler_protein_checker_
          • rosetta.protocols.stepwise.modeler.protein.loop_close
            • rosetta.protocols.stepwise.modeler.protein.loop_close._protocols_stepwise_modeler_protein_loop_close_
        • rosetta.protocols.stepwise.modeler.rna
          • rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
          • rosetta.protocols.stepwise.modeler.rna.bulge
            • rosetta.protocols.stepwise.modeler.rna.bulge._protocols_stepwise_modeler_rna_bulge_
          • rosetta.protocols.stepwise.modeler.rna.checker
            • rosetta.protocols.stepwise.modeler.rna.checker._protocols_stepwise_modeler_rna_checker_
          • rosetta.protocols.stepwise.modeler.rna.helix
            • rosetta.protocols.stepwise.modeler.rna.helix._protocols_stepwise_modeler_rna_helix_
          • rosetta.protocols.stepwise.modeler.rna.o2prime
            • rosetta.protocols.stepwise.modeler.rna.o2prime._protocols_stepwise_modeler_rna_o2prime_
          • rosetta.protocols.stepwise.modeler.rna.phosphate
            • rosetta.protocols.stepwise.modeler.rna.phosphate._protocols_stepwise_modeler_rna_phosphate_
          • rosetta.protocols.stepwise.modeler.rna.rigid_body
            • rosetta.protocols.stepwise.modeler.rna.rigid_body._protocols_stepwise_modeler_rna_rigid_body_
          • rosetta.protocols.stepwise.modeler.rna.sugar
            • rosetta.protocols.stepwise.modeler.rna.sugar._protocols_stepwise_modeler_rna_sugar_
        • rosetta.protocols.stepwise.modeler.working_parameters
          • rosetta.protocols.stepwise.modeler.working_parameters._protocols_stepwise_modeler_working_parameters_
      • rosetta.protocols.stepwise.monte_carlo
        • rosetta.protocols.stepwise.monte_carlo._protocols_stepwise_monte_carlo_
        • rosetta.protocols.stepwise.monte_carlo.mover
          • rosetta.protocols.stepwise.monte_carlo.mover._protocols_stepwise_monte_carlo_mover_
        • rosetta.protocols.stepwise.monte_carlo.options
          • rosetta.protocols.stepwise.monte_carlo.options._protocols_stepwise_monte_carlo_options_
        • rosetta.protocols.stepwise.monte_carlo.rna
          • rosetta.protocols.stepwise.monte_carlo.rna._protocols_stepwise_monte_carlo_rna_
        • rosetta.protocols.stepwise.monte_carlo.submotif
          • rosetta.protocols.stepwise.monte_carlo.submotif._protocols_stepwise_monte_carlo_submotif_
      • rosetta.protocols.stepwise.options
        • rosetta.protocols.stepwise.options._protocols_stepwise_options_
      • rosetta.protocols.stepwise.sampler
        • rosetta.protocols.stepwise.sampler._protocols_stepwise_sampler_
        • rosetta.protocols.stepwise.sampler.copy_dofs
          • rosetta.protocols.stepwise.sampler.copy_dofs._protocols_stepwise_sampler_copy_dofs_
        • rosetta.protocols.stepwise.sampler.input_streams
          • rosetta.protocols.stepwise.sampler.input_streams._protocols_stepwise_sampler_input_streams_
        • rosetta.protocols.stepwise.sampler.protein
          • rosetta.protocols.stepwise.sampler.protein._protocols_stepwise_sampler_protein_
        • rosetta.protocols.stepwise.sampler.rigid_body
          • rosetta.protocols.stepwise.sampler.rigid_body._protocols_stepwise_sampler_rigid_body_
        • rosetta.protocols.stepwise.sampler.rna
          • rosetta.protocols.stepwise.sampler.rna._protocols_stepwise_sampler_rna_
        • rosetta.protocols.stepwise.sampler.screener
          • rosetta.protocols.stepwise.sampler.screener._protocols_stepwise_sampler_screener_
      • rosetta.protocols.stepwise.screener
        • rosetta.protocols.stepwise.screener._protocols_stepwise_screener_
      • rosetta.protocols.stepwise.setup
        • rosetta.protocols.stepwise.setup._protocols_stepwise_setup_
    • rosetta.protocols.surface_docking
      • rosetta.protocols.surface_docking._protocols_surface_docking_
    • rosetta.protocols.symmetric_docking
      • rosetta.protocols.symmetric_docking._protocols_symmetric_docking_
      • rosetta.protocols.symmetric_docking.membrane
        • rosetta.protocols.symmetric_docking.membrane._protocols_symmetric_docking_membrane_
    • rosetta.protocols.toolbox
      • rosetta.protocols.toolbox._protocols_toolbox_
      • rosetta.protocols.toolbox.match_enzdes_util
        • rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
      • rosetta.protocols.toolbox.pose_manipulation
        • rosetta.protocols.toolbox.pose_manipulation._protocols_toolbox_pose_manipulation_
      • rosetta.protocols.toolbox.pose_metric_calculators
        • rosetta.protocols.toolbox.pose_metric_calculators._protocols_toolbox_pose_metric_calculators_
      • rosetta.protocols.toolbox.rigid_body
        • rosetta.protocols.toolbox.rigid_body._protocols_toolbox_rigid_body_
      • rosetta.protocols.toolbox.rotamer_set_operations
        • rosetta.protocols.toolbox.rotamer_set_operations._protocols_toolbox_rotamer_set_operations_
      • rosetta.protocols.toolbox.sample_around
        • rosetta.protocols.toolbox.sample_around._protocols_toolbox_sample_around_
      • rosetta.protocols.toolbox.task_operations
        • rosetta.protocols.toolbox.task_operations._protocols_toolbox_task_operations_
    • rosetta.protocols.topology_broker
      • rosetta.protocols.topology_broker._protocols_topology_broker_'
      • rosetta.protocols.topology_broker.claims
        • rosetta.protocols.topology_broker.claims._protocols_topology_broker_claims_
      • rosetta.protocols.topology_broker.weights
        • rosetta.protocols.topology_broker.weights._protocols_topology_broker_weights_
    • rosetta.protocols.trajectory
      • rosetta.protocols.trajectory._protocols_trajectory_
    • rosetta.protocols.unfolded_state_energy_calculator
      • rosetta.protocols.unfolded_state_energy_calculator._protocols_unfolded_state_energy_calculator_
    • rosetta.protocols.viewer
      • rosetta.protocols.viewer._protocols_viewer_
    • rosetta.protocols.vip
      • rosetta.protocols.vip._protocols_vip_
    • rosetta.protocols.wum
      • rosetta.protocols.wum._protocols_wum_
    • rosetta.protocols.wum2
      • rosetta.protocols.wum2._protocols_wum2_
  • rosetta.utility
    • rosetta.utility._utility_
    • rosetta.utility.boinc
      • rosetta.utility.boinc._utility_boinc_
    • rosetta.utility.excn
      • rosetta.utility.excn._utility_excn_
    • rosetta.utility.factory
      • rosetta.utility.factory._utility_factory_
    • rosetta.utility.file
      • rosetta.utility.file._utility_file_
    • rosetta.utility.graph
      • rosetta.utility.graph._utility_graph_
    • rosetta.utility.io
      • rosetta.utility.io._utility_io_
    • rosetta.utility.json_spirit
      • rosetta.utility.json_spirit._utility_json_spirit_
    • rosetta.utility.keys
      • rosetta.utility.keys._utility_keys_
    • rosetta.utility.libsvm
      • rosetta.utility.libsvm._utility_libsvm_
    • rosetta.utility.lua
      • rosetta.utility.lua._utility_lua_
    • rosetta.utility.options
      • rosetta.utility.options._utility_options_
      • rosetta.utility.options.keys
        • rosetta.utility.options.keys._utility_options_keys_
    • rosetta.utility.pointer
      • rosetta.utility.pointer._utility_pointer_
      • rosetta.utility.pointer.boost
        • rosetta.utility.pointer.boost._utility_pointer_boost_
      • rosetta.utility.pointer.std
        • rosetta.utility.pointer.std._utility_pointer_std_
    • rosetta.utility.py
      • rosetta.utility.py._utility_py_
    • rosetta.utility.query
      • rosetta.utility.query._utility_query_
    • rosetta.utility.signals
      • rosetta.utility.signals._utility_signals_
    • rosetta.utility.sql_database
      • rosetta.utility.sql_database._utility_sql_database_
    • rosetta.utility.tag
      • rosetta.utility.tag._utility_tag_
    • rosetta.utility.thread
      • rosetta.utility.thread._utility_thread_
    • rosetta.utility.tools
      • rosetta.utility.tools._utility_tools_
  • rosetta.version'
• rosetta.core.pack.scmin._core_pack_scmin_'
• rosetta.core.scoring.vdwaals._core_scoring_vdwaals_'
• rosetta.protocols.coarse_rna._protocols_coarse_rna_'
• rosetta.protocols.enzdes._protocols_enzdes_'
• rosetta.protocols.forge.build.SegmentInsertConnectionScheme
  • rosetta.protocols.forge.build.SegmentInsertConnectionScheme._protocols_forge_build_SegmentInsertConnectionScheme_
• rosetta.protocols.forge.build._protocols_forge_build_'
• rosetta.protocols.forge.constraints._protocols_forge_constraints_'
• rosetta.protocols.forge.remodel._protocols_forge_remodel_'
• rosetta.protocols.multistate_design._protocols_multistate_design_'
• rosetta.protocols.pose_reporters._protocols_pose_reporters_'
• rosetta.protocols.pose_selectors._protocols_pose_selectors_'
• rosetta.protocols.stepwise.legacy.modeler.rna._protocols_stepwise_legacy_modeler_rna_'
• rosetta.protocols.stepwise.legacy.modeler.rna.connection
  • rosetta.protocols.stepwise.legacy.modeler.rna.connection._protocols_stepwise_legacy_modeler_rna_connection_
• rosetta.protocols.stepwise.legacy.screener._protocols_stepwise_legacy_screener_'
• rosetta.protocols.topology_broker._protocols_topology_broker_'
• rosetta.protocols.topology_broker.claims
  • rosetta.protocols.topology_broker.claims._protocols_topology_broker_claims_
• rosetta.protocols.topology_broker.weights
  • rosetta.protocols.topology_broker.weights._protocols_topology_broker_weights_