Module _protocols_medal_

alignment_probabilities( (int)num_residues, (SequenceAlignment)alignment, (vector1_Real)p) -> None :
    Computes per-residue alignment probabilities. To minimize assumptions
    about the fold tree, the number of residues in the pose is an explicit input.
    

    C++ signature :
        void alignment_probabilities(unsigned int,core::sequence::SequenceAlignment,utility::vector1<double, std::allocator<double> >*)

as_set( (Loops)loops, (object)s) -> None :
    Populates a hash table with the residues contained in loops
    

    C++ signature :
        void as_set(boost::shared_ptr<protocols::loops::Loops const>,boost::unordered::unordered_set<unsigned long, boost::hash<unsigned long>, std::equal_to<unsigned long>, std::allocator<unsigned long> >*)

chunk_probabilities( (Loops)chunks, (vector1_Real)p) -> None :
    Computes per-residue chunk probabilities. A linear voting scheme is
    used to bias sampling toward larger chunks.
    

    C++ signature :
        void chunk_probabilities(protocols::loops::Loops,utility::vector1<double, std::allocator<double> >*)

cutpoint_probabilities( (int)num_residues, (FoldTree)tree, (vector1_Real)p) -> None :
    Computes per-residue cutpoint probabilities. Sampling is biased
    toward residues proximal to a cutpoint.
    

    C++ signature :
        void cutpoint_probabilities(unsigned int,core::kinematics::FoldTree,utility::vector1<double, std::allocator<double> >*)

end_bias_probabilities( (int)num_residues, (vector1_Real)p) -> None :
    Biases sampling away from termini
    

    C++ signature :
        void end_bias_probabilities(unsigned int,utility::vector1<double, std::allocator<double> >*)

invalidate_residues_spanning_cuts( (FoldTree)tree, (int)fragment_len, (vector1_Real)probs) -> None :
    Zeroes out the probability of residues for which fragment insertion
    would cross cutpoint boundaries.
    

    C++ signature :
        void invalidate_residues_spanning_cuts(core::kinematics::FoldTree,unsigned long,utility::vector1<double, std::allocator<double> >*)

to_centroid( (Pose)pose) -> None :
    protocols/medal/util.hh:62

    C++ signature :
        void to_centroid(core::pose::Pose*)