Package rosetta :: Package protocols :: Package stepwise :: Package modeler :: Package rna :: Package rigid_body :: Module _protocols_stepwise_modeler_rna_rigid_body_
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Module _protocols_stepwise_modeler_rna_rigid_body_

Classes [hide private]
  BaseBin
protocols/stepwise/modeler/rna/rigid_body/FloatingBaseClasses.hh:35
  BaseBinAP
  BaseBinCAP
  compare_base_bin
protocols/stepwise/modeler/rna/rigid_body/FloatingBaseClasses.hh:48
  compare_base_binAP
  compare_base_binCAP
  compare_int_pair
protocols/stepwise/modeler/rna/rigid_body/FloatingBaseClasses.hh:70
  compare_int_pairAP
  compare_int_pairCAP
Functions [hide private]
 
DOF_bin_size(...)
DOF_bin_size( (str)DOF) -> float : protocols/stepwise/modeler/rna/rigid_body/util.hh:63
 
DOF_bin_value(...)
DOF_bin_value( (object)base_bin_it, (str)DOF) -> int : protocols/stepwise/modeler/rna/rigid_body/util.hh:60
 
analyze_base_bin_map(...)
analyze_base_bin_map( (object)base_bin_map, (str)DOF_one, (str)DOF_two, (str)foldername) -> None : protocols/stepwise/modeler/rna/rigid_body/util.hh:70
 
get_max_centroid_to_atom_distance(...)
get_max_centroid_to_atom_distance( (object)rsd_at_origin_list, (str)atom_name) -> float : protocols/stepwise/modeler/rna/rigid_body/util.hh:42
 
initialize_xyz_parameters(...)
initialize_xyz_parameters( (float)max_distance, (float)max_distance_squared, (int)centroid_bin_min, (int)centroid_bin_max, (object)moving_rsd_at_origin_list, (int)gap_size_to_anchor) -> None : protocols/stepwise/modeler/rna/rigid_body/util.hh:50
 
setup_pose_with_moving_residue_alternative_list(...)
setup_pose_with_moving_residue_alternative_list( (Pose)pose, (int)moving_res, (bool)extra_chi, (bool)use_phenix_geo) -> vector1_PoseOP : protocols/stepwise/modeler/rna/rigid_body/util.hh:57
Variables [hide private]
  __package__ = None
Function Details [hide private]

DOF_bin_size(...)

 

DOF_bin_size( (str)DOF) -> float :
    protocols/stepwise/modeler/rna/rigid_body/util.hh:63

    C++ signature :
        double DOF_bin_size(std::string)

DOF_bin_value(...)

 

DOF_bin_value( (object)base_bin_it, (str)DOF) -> int :
    protocols/stepwise/modeler/rna/rigid_body/util.hh:60

    C++ signature :
        int DOF_bin_value(std::_Rb_tree_const_iterator<std::pair<protocols::stepwise::modeler::rna::rigid_body::BaseBin const, int> >,std::string)

analyze_base_bin_map(...)

 

analyze_base_bin_map( (object)base_bin_map, (str)DOF_one, (str)DOF_two, (str)foldername) -> None :
    protocols/stepwise/modeler/rna/rigid_body/util.hh:70

    C++ signature :
        void analyze_base_bin_map(std::map<protocols::stepwise::modeler::rna::rigid_body::BaseBin, int, protocols::stepwise::modeler::rna::rigid_body::compare_base_bin, std::allocator<std::pair<protocols::stepwise::modeler::rna::rigid_body::BaseBin const, int> > >,std::string,std::string,std::string)

analyze_base_bin_map( (object)base_bin_map, (str)foldername) -> None :
    protocols/stepwise/modeler/rna/rigid_body/util.hh:67

    C++ signature :
        void analyze_base_bin_map(std::map<protocols::stepwise::modeler::rna::rigid_body::BaseBin, int, protocols::stepwise::modeler::rna::rigid_body::compare_base_bin, std::allocator<std::pair<protocols::stepwise::modeler::rna::rigid_body::BaseBin const, int> > >,std::string)

get_max_centroid_to_atom_distance(...)

 

get_max_centroid_to_atom_distance( (object)rsd_at_origin_list, (str)atom_name) -> float :
    protocols/stepwise/modeler/rna/rigid_body/util.hh:42

    C++ signature :
        double get_max_centroid_to_atom_distance(utility::vector1<boost::shared_ptr<core::conformation::Residue>, std::allocator<boost::shared_ptr<core::conformation::Residue> > >,std::string)

initialize_xyz_parameters(...)

 

initialize_xyz_parameters( (float)max_distance, (float)max_distance_squared, (int)centroid_bin_min, (int)centroid_bin_max, (object)moving_rsd_at_origin_list, (int)gap_size_to_anchor) -> None :
    protocols/stepwise/modeler/rna/rigid_body/util.hh:50

    C++ signature :
        void initialize_xyz_parameters(double {lvalue},double {lvalue},int {lvalue},int {lvalue},utility::vector1<boost::shared_ptr<core::conformation::Residue>, std::allocator<boost::shared_ptr<core::conformation::Residue> > >,unsigned long)

setup_pose_with_moving_residue_alternative_list(...)

 

setup_pose_with_moving_residue_alternative_list( (Pose)pose, (int)moving_res, (bool)extra_chi, (bool)use_phenix_geo) -> vector1_PoseOP :
    protocols/stepwise/modeler/rna/rigid_body/util.hh:57

    C++ signature :
        utility::vector1<boost::shared_ptr<core::pose::Pose>, std::allocator<boost::shared_ptr<core::pose::Pose> > > setup_pose_with_moving_residue_alternative_list(core::pose::Pose,unsigned long,bool,bool)