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G
G
(in
rosetta.protocols.comparative_modeling.features
)
get()
(in
SecondaryStructureSegmentFeaturesAP
)
get()
(in
EXCN_Msg_ExceptionCAP
)
G
(in
rosetta.protocols.comparative_modeling.features._protocols_comparative_modeling_features_
)
get()
(in
SecondaryStructureSegmentFeaturesCAP
)
get()
(in
EXCN_NullPointerAP
)
G
(in
TorsionBin
)
get()
(in
SecondaryStructureSegmentFeaturesCreatorAP
)
get()
(in
EXCN_NullPointerCAP
)
GA_Minimizer
(in
rosetta.core.optimization._core_optimization_
)
get()
(in
SecondaryStructureSegmentFeaturesCreatorCAP
)
get()
(in
EXCN_RangeErrorAP
)
GA_MinimizerAP
(in
rosetta.core.optimization._core_optimization_
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
EXCN_RangeErrorCAP
)
GA_MinimizerCAP
(in
rosetta.core.optimization._core_optimization_
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
EXCN_RosettaScriptsOptionAP
)
ga_mutation_probability()
(in
MinimizerOptions
)
get()
(in
SingletonBase_T_core_pack_dunbrack_RotamerLibrary_TAP
)
get()
(in
EXCN_RosettaScriptsOptionCAP
)
GAMMA
(in
rosetta.core.chemical.rna
)
get()
(in
SingletonBase_T_core_pack_dunbrack_RotamerLibrary_TCAP
)
get()
(in
FileNameAP
)
GAMMA
(in
rosetta.core.chemical.rna._core_chemical_rna_
)
get()
(in
SingletonBase_T_core_scoring_geometric_solvation_GridInfo_TAP
)
get()
(in
FileNameCAP
)
GAMMA
(in
RNA_Torsion
)
get()
(in
SingletonBase_T_core_scoring_geometric_solvation_GridInfo_TCAP
)
get()
(in
PathNameAP
)
gamma()
(in
CrystInfo
)
get()
(in
SingletonBase_T_core_scoring_geometric_solvation_WaterWeightGridSet_TAP
)
get()
(in
PathNameCAP
)
gamma()
(in
Pose
)
get()
(in
SingletonBase_T_core_scoring_geometric_solvation_WaterWeightGridSet_TCAP
)
get()
(in
EXCN_Stop_BFSAP
)
gamma()
(in
CSA
)
get()
(in
SmotifFeaturesAP
)
get()
(in
EXCN_Stop_BFSCAP
)
gamma()
(in
DNABase
)
get()
(in
SmotifFeaturesCAP
)
get()
(in
null_bfs_prune_visitorAP
)
gamma()
(in
EulerAngles
)
get()
(in
SmotifFeaturesCreatorAP
)
get()
(in
null_bfs_prune_visitorCAP
)
GAMMA_AA
(in
rosetta
)
get()
(in
SmotifFeaturesCreatorCAP
)
get()
(in
Svm_node_rosettaAP
)
GAMMA_AA
(in
rosetta.core.chemical
)
get()
(in
StructureFeaturesAP
)
get()
(in
Svm_node_rosettaCAP
)
GAMMA_AA
(in
rosetta.core.chemical._core_chemical_
)
get()
(in
StructureFeaturesCAP
)
get()
(in
Svm_rosettaAP
)
GAMMA_AA
(in
ResidueProperty
)
get()
(in
StructureFeaturesCreatorAP
)
get()
(in
Svm_rosettaCAP
)
gamma_aform()
(in
RNA_FittedTorsionInfo
)
get()
(in
StructureFeaturesCreatorCAP
)
get()
(in
LuaIteratorAP
)
gamma_components()
(in
DNATorsionPotential
)
get()
(in
StructureScoresFeaturesAP
)
get()
(in
LuaIteratorCAP
)
gap_char()
(in
Sequence
)
get()
(in
StructureScoresFeaturesCAP
)
get()
(in
LuaObjectAP
)
gap_extend()
(in
ChemicalShiftScoringScheme
)
get()
(in
StructureScoresFeaturesCreatorAP
)
get()
(in
LuaObjectCAP
)
gap_extend()
(in
CompassScoringScheme
)
get()
(in
StructureScoresFeaturesCreatorCAP
)
get()
(in
BaseAP
)
gap_extend()
(in
CompositeScoringScheme
)
get()
(in
TaskOperationFeaturesAP
)
get()
(in
BaseCAP
)
gap_extend()
(in
DPScoringScheme
)
get()
(in
TaskOperationFeaturesCAP
)
get()
(in
PyExitCallbackAP
)
gap_extend()
(in
L1ScoringScheme
)
get()
(in
TaskOperationFeaturesCreatorAP
)
get()
(in
PyExitCallbackCAP
)
gap_extend()
(in
MatrixScoringScheme
)
get()
(in
TaskOperationFeaturesCreatorCAP
)
get()
(in
ValueAP
)
gap_extend()
(in
PairScoringScheme
)
get()
(in
TopCountOfAllInputsAP
)
get()
(in
ValueCAP
)
gap_extend()
(in
ProfSimScoringScheme
)
get()
(in
TopCountOfAllInputsCAP
)
get()
(in
LinkAP
)
gap_extend()
(in
ScoringScheme
)
get()
(in
TopCountOfEachInputAP
)
get()
(in
LinkCAP
)
gap_extend()
(in
SimpleScoringScheme
)
get()
(in
TopCountOfEachInputCAP
)
get()
(in
LinkUnitAP
)
gap_open()
(in
ChemicalShiftScoringScheme
)
get()
(in
TopPercentOfAllInputsAP
)
get()
(in
LinkUnitCAP
)
gap_open()
(in
CompassScoringScheme
)
get()
(in
TopPercentOfAllInputsCAP
)
get()
(in
DatabaseModeAP
)
gap_open()
(in
CompositeScoringScheme
)
get()
(in
TopPercentOfEachInputAP
)
get()
(in
DatabaseModeCAP
)
gap_open()
(in
DPScoringScheme
)
get()
(in
TopPercentOfEachInputCAP
)
get()
(in
TransactionModeAP
)
gap_open()
(in
L1ScoringScheme
)
get()
(in
TotalScoreFeaturesAP
)
get()
(in
TransactionModeCAP
)
gap_open()
(in
MatrixScoringScheme
)
get()
(in
TotalScoreFeaturesCAP
)
get()
(in
TagAP
)
gap_open()
(in
PairScoringScheme
)
get()
(in
TotalScoreFeaturesCreatorAP
)
get()
(in
TagCAP
)
gap_open()
(in
ProfSimScoringScheme
)
get()
(in
TotalScoreFeaturesCreatorCAP
)
get_2D_histogram()
(in
OrbitalsStatistics
)
gap_open()
(in
ScoringScheme
)
get()
(in
TrajectoryMapFeaturesAP
)
get_2way_orientation()
(in
rosetta.core.scoring._core_scoring_
)
gap_open()
(in
SimpleScoringScheme
)
get()
(in
TrajectoryMapFeaturesCAP
)
get_2way_orientation()
(in
LeGrandSasa
)
gap_size()
(in
StepWiseBasicWorkingParameters
)
get()
(in
TrajectoryMapFeaturesCreatorAP
)
get_A()
(in
rosetta.core.scoring.electron_density._core_scoring_electron_density_
)
gap_size_to_anchor()
(in
StepWiseWorkingParameters
)
get()
(in
TrajectoryMapFeaturesCreatorCAP
)
get_A()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
gapped_positions()
(in
SequenceAlignment
)
get()
(in
TrajectoryReportToDBAP
)
get_a()
(in
UnionEdge
)
garbage_collection()
(in
MpiFileBuffer
)
get()
(in
TrajectoryReportToDBCAP
)
get_A()
(in
BBGaussianMover
)
gasteiger
(in
rosetta.core.chemical
)
get()
(in
TrajectoryReportToDBCreatorAP
)
get_A_all()
(in
PcsDataCenter
)
gasteiger_atom_type()
(in
Atom
)
get()
(in
TrajectoryReportToDBCreatorCAP
)
get_a_axis()
(in
EllipsoidalRandomizationMover
)
gasteiger_atom_type()
(in
ResidueType
)
get()
(in
UnrecognizedAtomFeaturesAP
)
get_A_index()
(in
PCS_data_per_lanthanides
)
gasteiger_atom_type_set()
(in
ChemicalManager
)
get()
(in
UnrecognizedAtomFeaturesCAP
)
get_A_index()
(in
PcsDataLanthanide
)
gasteiger_atom_type_set()
(in
PossibleAtomTypesForAtom
)
get()
(in
UnrecognizedAtomFeaturesCreatorAP
)
get_A_index()
(in
PCS_data_per_lanthanides_Ts1
)
GasteigerAtomTypeData
(in
rosetta.core.chemical.gasteiger._core_chemical_gasteiger_
)
get()
(in
UnrecognizedAtomFeaturesCreatorCAP
)
get_A_index()
(in
PCS_data_per_lanthanides_Ts2
)
GasteigerAtomTypeDataAP
(in
rosetta.core.chemical.gasteiger._core_chemical_gasteiger_
)
get()
(in
WaterFeaturesAP
)
get_A_index()
(in
PCS_data_per_lanthanides_Ts3
)
GasteigerAtomTypeDataCAP
(in
rosetta.core.chemical.gasteiger._core_chemical_gasteiger_
)
get()
(in
WaterFeaturesCAP
)
get_A_index()
(in
PCS_data_per_lanthanides_Ts4
)
GasteigerAtomTypeSet
(in
rosetta.core.chemical.gasteiger._core_chemical_gasteiger_
)
get()
(in
WaterFeaturesCreatorAP
)
get_aa_submatrix_energies()
(in
AminoAcidNeighborSparseMatrix_T_float_T
)
GasteigerAtomTypeSetAP
(in
rosetta.core.chemical.gasteiger._core_chemical_gasteiger_
)
get()
(in
WaterFeaturesCreatorCAP
)
get_aa_submatrix_energies()
(in
DensePDEdge
)
GasteigerAtomTypeSetCAP
(in
rosetta.core.chemical.gasteiger._core_chemical_gasteiger_
)
get()
(in
ConcurrencyTestAP
)
get_aa_submatrix_energies()
(in
DoubleLazyEdge
)
gate_pssm_scores()
(in
NMerPSSMEnergy
)
get()
(in
ConcurrencyTestCAP
)
get_aa_submatrix_energies()
(in
LazyEdge
)
gate_svm_scores()
(in
NMerSVMEnergy
)
get()
(in
ConcurrencyTestCreatorAP
)
get_aa_submatrix_energies()
(in
PDEdge
)
gather_coords()
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
get()
(in
ConcurrencyTestCreatorCAP
)
get_aa_submatrix_energies_for_edge()
(in
DensePDInteractionGraph
)
GatherPosesMover
(in
rosetta.protocols.cluster._protocols_cluster_
)
get()
(in
FragmentPairAP
)
get_aa_submatrix_energies_for_edge()
(in
DoubleLazyInteractionGraph
)
GatherPosesMoverAP
(in
rosetta.protocols.cluster._protocols_cluster_
)
get()
(in
FragmentPairCAP
)
get_aa_submatrix_energies_for_edge()
(in
FixedBBInteractionGraph
)
GatherPosesMoverCAP
(in
rosetta.protocols.cluster._protocols_cluster_
)
get()
(in
HelicalFragmentAP
)
get_aa_submatrix_energies_for_edge()
(in
LazyInteractionGraph
)
gauss
(in
ScoreType
)
get()
(in
HelicalFragmentCAP
)
get_aa_submatrix_energies_for_edge()
(in
PDInteractionGraph
)
gauss
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
HelixBundleFeaturesAP
)
get_aa_type()
(in
SparseMatrixIndex
)
gauss
(in
rosetta.core.scoring
)
get()
(in
HelixBundleFeaturesCAP
)
get_ab_design_dock_high_scorefxn()
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
gauss
(in
rosetta
)
get()
(in
HelixBundleFeaturesCreatorAP
)
get_ab_design_dock_low_scorefxn()
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
Gaussian
(in
rosetta.protocols.ligand_docking
)
get()
(in
HelixBundleFeaturesCreatorCAP
)
get_ab_design_global_scorefxn()
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
Gaussian
(in
Distribution
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_ab_design_min_scorefxn()
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
Gaussian
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_abego()
(in
rosetta.core.sequence._core_sequence_
)
gaussian()
(in
SmoothScoreTermCoeffs
)
get()
(in
SandwichFeaturesAP
)
get_abego_string()
(in
ABEGOManager
)
gaussian()
(in
RandomGenerator
)
get()
(in
SandwichFeaturesCAP
)
get_ABGEO_string()
(in
CanonicalSamplingMover
)
gaussian()
(in
rosetta.numeric.random._numeric_random_
)
get()
(in
SandwichFeaturesCreatorAP
)
get_accept_aborted_loops()
(in
IndependentLoopMover
)
gaussian_deriv()
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
get()
(in
SandwichFeaturesCreatorCAP
)
get_accessible_states()
(in
FlexbbInteractionGraph
)
gaussian_jump_move()
(in
rosetta.protocols.rigid._protocols_rigid_
)
get()
(in
SandwichFragmentAP
)
get_accuracy_weight()
(in
RNA_ChemicalShiftPotential
)
gaussian_move()
(in
Jump
)
get()
(in
SandwichFragmentCAP
)
get_add_or_delete_element()
(in
StepWiseMoveSelector
)
gaussian_move_single_rb()
(in
Jump
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_additional_output()
(in
RotamerDumpMover
)
gaussian_parameter_set_alpha()
(in
RNA_FittedTorsionInfo
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_additional_output()
(in
AbrelaxMover
)
gaussian_parameter_set_beta()
(in
RNA_FittedTorsionInfo
)
get()
(in
StrandBundleFeaturesAP
)
get_additional_output()
(in
ClassicAbinitio
)
gaussian_parameter_set_chi_north()
(in
RNA_FittedTorsionInfo
)
get()
(in
StrandBundleFeaturesCAP
)
get_additional_output()
(in
ConstraintFragmentSampler
)
gaussian_parameter_set_chi_south()
(in
RNA_FittedTorsionInfo
)
get()
(in
StrandBundleFeaturesCreatorAP
)
get_additional_output()
(in
DomainAssembly
)
gaussian_parameter_set_delta_north()
(in
RNA_FittedTorsionInfo
)
get()
(in
StrandBundleFeaturesCreatorCAP
)
get_additional_output()
(in
DoubleLayerKinematicAbinitio
)
gaussian_parameter_set_delta_south()
(in
RNA_FittedTorsionInfo
)
get()
(in
StrandFragmentAP
)
get_additional_output()
(in
FoldConstraints
)
gaussian_parameter_set_epsilon_north()
(in
RNA_FittedTorsionInfo
)
get()
(in
StrandFragmentCAP
)
get_additional_output()
(in
FragmentSampler
)
gaussian_parameter_set_epsilon_south()
(in
RNA_FittedTorsionInfo
)
get()
(in
SetupForFibrilMoverAP
)
get_additional_output()
(in
JumpingFoldConstraintsWrapper
)
gaussian_parameter_set_gamma()
(in
RNA_FittedTorsionInfo
)
get()
(in
SetupForFibrilMoverCAP
)
get_additional_output()
(in
KinematicAbinitio
)
gaussian_parameter_set_nu1_north()
(in
RNA_FittedTorsionInfo
)
get()
(in
CalculatorFilterAP
)
get_additional_output()
(in
KinematicTaskControl
)
gaussian_parameter_set_nu1_south()
(in
RNA_FittedTorsionInfo
)
get()
(in
CalculatorFilterCAP
)
get_additional_output()
(in
LoopJumpFoldCst
)
gaussian_parameter_set_nu2_north()
(in
RNA_FittedTorsionInfo
)
get()
(in
CalculatorFilterCreatorAP
)
get_additional_output()
(in
MembraneAbinitio
)
gaussian_parameter_set_nu2_south()
(in
RNA_FittedTorsionInfo
)
get()
(in
CalculatorFilterCreatorCAP
)
get_additional_output()
(in
Protocol
)
gaussian_parameter_set_zeta_alpha_ap()
(in
RNA_FittedTorsionInfo
)
get()
(in
CombinedFilterAP
)
get_additional_output()
(in
ResolutionSwitcher
)
gaussian_parameter_set_zeta_alpha_sc_minus()
(in
RNA_FittedTorsionInfo
)
get()
(in
CombinedFilterCAP
)
get_additional_output()
(in
AbscriptLoopCloserCM
)
gaussian_parameter_set_zeta_alpha_sc_plus()
(in
RNA_FittedTorsionInfo
)
get()
(in
CombinedFilterCreatorAP
)
get_additional_output()
(in
AbscriptMover
)
gaussian_random_xform()
(in
rosetta.numeric.random._numeric_random_
)
get()
(in
CombinedFilterCreatorCAP
)
get_additional_output()
(in
AbscriptStageMover
)
GaussianChainDoubleFunc
(in
rosetta.core.scoring.func._core_scoring_func_
)
get()
(in
CompoundFilterAP
)
get_additional_output()
(in
ConstraintPreparer
)
GaussianChainDoubleFuncAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
get()
(in
CompoundFilterCAP
)
get_additional_output()
(in
FragmentCM
)
GaussianChainDoubleFuncCAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
get()
(in
CompoundFilterCreatorAP
)
get_additional_output()
(in
FragmentJumpCM
)
GaussianChainFunc
(in
rosetta.core.scoring.func._core_scoring_func_
)
get()
(in
CompoundFilterCreatorCAP
)
get_additional_output()
(in
RigidChunkCM
)
GaussianChainFuncAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
get()
(in
ContingentFilterAP
)
get_additional_output()
(in
StagePreparer
)
GaussianChainFuncCAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
get()
(in
ContingentFilterCAP
)
get_additional_output()
(in
StructPerturberCM
)
GaussianChainQuadrupleFunc
(in
rosetta.core.scoring.func._core_scoring_func_
)
get()
(in
ContingentFilterCreatorAP
)
get_additional_output()
(in
InterfaceAnalyzerMover
)
GaussianChainQuadrupleFuncAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
get()
(in
ContingentFilterCreatorCAP
)
get_additional_output()
(in
LoopAnalyzerMover
)
GaussianChainQuadrupleFuncCAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
get()
(in
FalseFilterAP
)
get_additional_output()
(in
PackStatMover
)
GaussianChainSingleFunc
(in
rosetta.core.scoring.func._core_scoring_func_
)
get()
(in
FalseFilterCAP
)
get_additional_output()
(in
AnchoredDesignMover
)
GaussianChainSingleFuncAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
get()
(in
FalseFilterCreatorAP
)
get_additional_output()
(in
AnchoredPerturbMover
)
GaussianChainSingleFuncCAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
get()
(in
FalseFilterCreatorCAP
)
get_additional_output()
(in
AnchoredRefineMover
)
GaussianChainTripleFunc
(in
rosetta.core.scoring.func._core_scoring_func_
)
get()
(in
FilterAP
)
get_additional_output()
(in
AntibodyModelerProtocol
)
GaussianChainTripleFuncAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
get()
(in
FilterCAP
)
get_additional_output()
(in
CDRsMinPackMin
)
GaussianChainTripleFuncCAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
get()
(in
FilterCollectionAP
)
get_additional_output()
(in
CloseOneCDRLoop
)
GaussianFunc
(in
rosetta.core.scoring.func._core_scoring_func_
)
get()
(in
FilterCollectionCAP
)
get_additional_output()
(in
GraftCDRLoopsProtocol
)
GaussianFuncAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
get()
(in
FilterCreatorAP
)
get_additional_output()
(in
GraftOneCDRLoop
)
GaussianFuncCAP
(in
rosetta.core.scoring.func._core_scoring_func_
)
get()
(in
FilterCreatorCAP
)
get_additional_output()
(in
GraftedStemOptimizer
)
GaussianOverlapEnergy
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
get()
(in
FilterFactoryAP
)
get_additional_output()
(in
H3CterInsert
)
GaussianOverlapEnergyAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
get()
(in
FilterFactoryCAP
)
get_additional_output()
(in
H3PerturbCCD
)
GaussianOverlapEnergyCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
get()
(in
IfThenFilterAP
)
get_additional_output()
(in
H3RefineCCD
)
GaussianParameter
(in
rosetta.core.chemical.rna._core_chemical_rna_
)
get()
(in
IfThenFilterCAP
)
get_additional_output()
(in
LHRepulsiveRamp
)
GaussianParameterAP
(in
rosetta.core.chemical.rna._core_chemical_rna_
)
get()
(in
IfThenFilterCreatorAP
)
get_additional_output()
(in
ModelCDRH3
)
GaussianParameterCAP
(in
rosetta.core.chemical.rna._core_chemical_rna_
)
get()
(in
IfThenFilterCreatorCAP
)
get_additional_output()
(in
RefineBetaBarrel
)
GaussianRBSegmentMover
(in
rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
)
get()
(in
MoveBeforeFilterAP
)
get_additional_output()
(in
RefineOneCDRLoop
)
GaussianRBSegmentMoverAP
(in
rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
)
get()
(in
MoveBeforeFilterCAP
)
get_additional_output()
(in
RefineOneCDRLoopCentroid
)
GaussianRBSegmentMoverCAP
(in
rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
)
get()
(in
MoveBeforeFilterCreatorAP
)
get_additional_output()
(in
CDRDihedralConstraintMover
)
gb_elec
(in
ScoreType
)
get()
(in
MoveBeforeFilterCreatorCAP
)
get_additional_output()
(in
ParatopeEpitopeSiteConstraintMover
)
gb_elec
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
ReplicateFilterAP
)
get_additional_output()
(in
ParatopeSiteConstraintMover
)
gb_elec
(in
rosetta.core.scoring
)
get()
(in
ReplicateFilterCAP
)
get_additional_output()
(in
AntibodyDesignMover
)
gb_elec
(in
rosetta
)
get()
(in
ReplicateFilterCreatorAP
)
get_additional_output()
(in
AntibodyDesignProtocol
)
GB_GET_ALL_BORN_RADII
(in
rosetta.basic
)
get()
(in
ReplicateFilterCreatorCAP
)
get_additional_output()
(in
MutateFrameworkForCluster
)
GB_GET_ALL_BORN_RADII
(in
rosetta.basic._basic_
)
get()
(in
StochasticFilterAP
)
get_additional_output()
(in
AntibodyModeler
)
GB_GET_ALL_BORN_RADII
(in
ProfTag
)
get()
(in
StochasticFilterCAP
)
get_additional_output()
(in
CDRH3Modeler
)
GB_SETUP_FOR_PACKING
(in
rosetta.basic
)
get()
(in
StochasticFilterCreatorAP
)
get_additional_output()
(in
CloseOneMover
)
GB_SETUP_FOR_PACKING
(in
rosetta.basic._basic_
)
get()
(in
StochasticFilterCreatorCAP
)
get_additional_output()
(in
GraftMover
)
GB_SETUP_FOR_PACKING
(in
ProfTag
)
get()
(in
TimeFilterAP
)
get_additional_output()
(in
GraftOneMover
)
GDB
(in
rosetta.protocols.sparta._protocols_sparta_
)
get()
(in
TimeFilterCAP
)
get_additional_output()
(in
LoopRlxMover
)
GDBAP
(in
rosetta.protocols.sparta._protocols_sparta_
)
get()
(in
TimeFilterCreatorAP
)
get_additional_output()
(in
BackrubMover
)
GDBCAP
(in
rosetta.protocols.sparta._protocols_sparta_
)
get()
(in
TimeFilterCreatorCAP
)
get_additional_output()
(in
BackrubProtocol
)
gdt_by_TM()
(in
Align_RmsdEvaluator
)
get()
(in
TrueFilterAP
)
get_additional_output()
(in
BackrubSidechainMover
)
gdtha()
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
TrueFilterCAP
)
get_additional_output()
(in
CanonicalSamplingMover
)
gdtsc()
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
TrueFilterCreatorAP
)
get_additional_output()
(in
FixedTemperatureController
)
ge()
(in
vectorL_ZeroSelector_T_false_T
)
get()
(in
TrueFilterCreatorCAP
)
get_additional_output()
(in
MetricRecorder
)
gen
(in
rosetta.core.fragment.picking_old.vall
)
get()
(in
BluePrintBDRAP
)
get_additional_output()
(in
MetropolisHastingsMover
)
gen_born_lr
(in
LongRangeEnergyType
)
get()
(in
BluePrintBDRCAP
)
get_additional_output()
(in
ParallelTempering
)
gen_born_lr
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
get()
(in
BluePrintBDRCreatorAP
)
get_additional_output()
(in
ProgressBarObserver
)
gen_born_lr
(in
rosetta.core.scoring.methods
)
get()
(in
BluePrintBDRCreatorCAP
)
get_additional_output()
(in
SidechainMetropolisHastingsMover
)
GEN_BORN_POSE_INFO
(in
Enum
)
get()
(in
CircularPermutationAP
)
get_additional_output()
(in
SimulatedTempering
)
GEN_BORN_POSE_INFO
(in
CacheableDataType
)
get()
(in
CircularPermutationCAP
)
get_additional_output()
(in
TemperatureController
)
GEN_BORN_ROTAMER_BACKGROUND_ENERGIES
(in
rosetta.basic
)
get()
(in
CircularPermutationCreatorAP
)
get_additional_output()
(in
TemperingBase
)
GEN_BORN_ROTAMER_BACKGROUND_ENERGIES
(in
rosetta.basic._basic_
)
get()
(in
CircularPermutationCreatorCAP
)
get_additional_output()
(in
ThermodynamicMover
)
GEN_BORN_ROTAMER_BACKGROUND_ENERGIES
(in
ProfTag
)
get()
(in
MatchResiduesAP
)
get_additional_output()
(in
ThermodynamicObserver
)
GEN_BORN_ROTAMER_PAIR_ENERGIES
(in
rosetta.basic
)
get()
(in
MatchResiduesCAP
)
get_additional_output()
(in
TrialCounterObserver
)
GEN_BORN_ROTAMER_PAIR_ENERGIES
(in
rosetta.basic._basic_
)
get()
(in
MatchResiduesMoverAP
)
get_additional_output()
(in
AssignToClustersMover
)
GEN_BORN_ROTAMER_PAIR_ENERGIES
(in
ProfTag
)
get()
(in
MatchResiduesMoverCAP
)
get_additional_output()
(in
ClusterBase
)
gen_coord_constraint()
(in
CartesianNormalModeMover
)
get()
(in
MatchResiduesMoverCreatorAP
)
get_additional_output()
(in
ClusterPhilStyle
)
gen_coord_constraint()
(in
NormalModeRelaxMover
)
get()
(in
MatchResiduesMoverCreatorCAP
)
get_additional_output()
(in
ClusterPhilStyle_Loop
)
gen_coord_constraint()
(in
TorsionNormalModeMover
)
get()
(in
NcontactsCalculatorAP
)
get_additional_output()
(in
ClusterPhilStyle_PoseReporter
)
gen_diversity_pool()
(in
IterativeAbrelax
)
get()
(in
NcontactsCalculatorCAP
)
get_additional_output()
(in
EnsembleConstraints
)
gen_diversity_pool()
(in
IterativeBase
)
get()
(in
SheetConstraintsRCGAP
)
get_additional_output()
(in
EnsembleConstraints_Simple
)
gen_diversity_pool()
(in
IterativeCentroid
)
get()
(in
SheetConstraintsRCGCAP
)
get_additional_output()
(in
GatherPosesMover
)
gen_diversity_pool()
(in
IterativeFullatom
)
get()
(in
SheetCstGeneratorCreatorAP
)
get_additional_output()
(in
CoarseRNA_LoopCloser
)
gen_dynamic_patches()
(in
IterativeAbrelax
)
get()
(in
SheetCstGeneratorCreatorCAP
)
get_additional_output()
(in
ExtraThreadingMover
)
gen_dynamic_patches()
(in
IterativeBase
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_additional_output()
(in
LoopRelaxMover
)
gen_dynamic_patches()
(in
IterativeCentroid
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_additional_output()
(in
LoopRelaxThreadingMover
)
gen_dynamic_patches()
(in
IterativeFullatom
)
get()
(in
CoreDunbrackFilterAP
)
get_additional_output()
(in
MultiThreadingMover
)
gen_evaluation_output()
(in
IterativeAbrelax
)
get()
(in
CoreDunbrackFilterCAP
)
get_additional_output()
(in
PartialThreadingMover
)
gen_evaluation_output()
(in
IterativeBase
)
get()
(in
CoreDunbrackFilterCreatorAP
)
get_additional_output()
(in
RecoverSideChainsMover
)
gen_evaluation_output()
(in
IterativeCentroid
)
get()
(in
CoreDunbrackFilterCreatorCAP
)
get_additional_output()
(in
StealLigandMover
)
gen_evaluation_output()
(in
IterativeFullatom
)
get()
(in
FragQualFilterAP
)
get_additional_output()
(in
StealSideChainsMover
)
GenBornEnergy
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
get()
(in
FragQualFilterCAP
)
get_additional_output()
(in
ThreadingMover
)
GenBornEnergyAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
get()
(in
FragQualFilterCreatorAP
)
get_additional_output()
(in
ContactMap
)
GenBornEnergyCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
get()
(in
FragQualFilterCreatorCAP
)
get_additional_output()
(in
FitBfactorsMover
)
GenBornEnergyCreator
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
get()
(in
HSSTripletFilterAP
)
get_additional_output()
(in
LoadDensityMapMover
)
GenBornEnergyCreatorAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
get()
(in
HSSTripletFilterCAP
)
get_additional_output()
(in
RecomputeDensityMapMover
)
GenBornEnergyCreatorCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
get()
(in
HSSTripletFilterCreatorAP
)
get_additional_output()
(in
SetCrystWeightMover
)
GenBornPoseInfo
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
HSSTripletFilterCreatorCAP
)
get_additional_output()
(in
SetRefinementOptionsMover
)
GenBornPoseInfoAP
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
HelixKinkFilterAP
)
get_additional_output()
(in
TagPoseWithRefinementStatsMover
)
GenBornPoseInfoCAP
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
HelixKinkFilterCAP
)
get_additional_output()
(in
UpdateSolventMover
)
GenBornPotential
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
HelixKinkFilterCreatorAP
)
get_additional_output()
(in
CreateAngleConstraint
)
GenBornPotentialAP
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
HelixKinkFilterCreatorCAP
)
get_additional_output()
(in
CreateDistanceConstraint
)
GenBornPotentialCAP
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
HelixPairingFilterAP
)
get_additional_output()
(in
CreateTorsionConstraint
)
GenBornResidueInfo
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
HelixPairingFilterCAP
)
get_additional_output()
(in
DeclareBond
)
GenBornResidueInfoAP
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
HelixPairingFilterCreatorAP
)
get_additional_output()
(in
PeptideStubMover
)
GenBornResidueInfoCAP
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
HelixPairingFilterCreatorCAP
)
get_additional_output()
(in
ddGMover
)
GenBornRotamerSetInfo
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
InterlockingAromaFilterAP
)
get_additional_output()
(in
GreedyOptMutationMover
)
GenBornRotamerSetInfoAP
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
InterlockingAromaFilterCAP
)
get_additional_output()
(in
ParetoOptMutationMover
)
GenBornRotamerSetInfoCAP
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
InterlockingAromaFilterCreatorAP
)
get_additional_output()
(in
DesignProteinBackboneAroundDNA
)
geneate_pose_from_old_state
(in
DaemonSetMessage
)
get()
(in
InterlockingAromaFilterCreatorCAP
)
get_additional_output()
(in
DnaInterfaceMinMover
)
geneate_pose_from_old_state
(in
rosetta.protocols.pack_daemon._protocols_pack_daemon_
)
get()
(in
NcontactsFilterAP
)
get_additional_output()
(in
DnaInterfaceMultiStateDesign
)
geneate_pose_from_old_state
(in
rosetta.protocols.pack_daemon
)
get()
(in
NcontactsFilterCAP
)
get_additional_output()
(in
DnaInterfacePacker
)
general_set_phi()
(in
rosetta.protocols.generalized_kinematic_closure._protocols_generalized_kinematic_closure_
)
get()
(in
NcontactsFilterCreatorAP
)
get_additional_output()
(in
SeparateDnaFromNonDna
)
general_set_psi()
(in
rosetta.protocols.generalized_kinematic_closure._protocols_generalized_kinematic_closure_
)
get()
(in
NcontactsFilterCreatorCAP
)
get_additional_output()
(in
ConformerSwitchMover
)
GeneralEvent
(in
rosetta.core.conformation.signals._core_conformation_signals_
)
get()
(in
ParallelBetaPairingPreferenceFilterAP
)
get_additional_output()
(in
DockMCMCycle
)
GeneralEvent
(in
rosetta.core.pose.signals._core_pose_signals_
)
get()
(in
ParallelBetaPairingPreferenceFilterCAP
)
get_additional_output()
(in
DockMCMProtocol
)
generalEvent()
(in
PyMOLObserver
)
get()
(in
ParallelBetaPairingPreferenceFilterCreatorAP
)
get_additional_output()
(in
DockMinMover
)
generalEvent()
(in
PosePyObserver
)
get()
(in
ParallelBetaPairingPreferenceFilterCreatorCAP
)
get_additional_output()
(in
DockSetupMover
)
generalEvent()
(in
PyMolObserver
)
get()
(in
SecondaryStructureCountFilterAP
)
get_additional_output()
(in
DockingEnsemblePrepackProtocol
)
GeneralEventAP
(in
rosetta.core.conformation.signals._core_conformation_signals_
)
get()
(in
SecondaryStructureCountFilterCAP
)
get_additional_output()
(in
DockingHighRes
)
GeneralEventAP
(in
rosetta.core.pose.signals._core_pose_signals_
)
get()
(in
SecondaryStructureCountFilterCreatorAP
)
get_additional_output()
(in
DockingHighResLegacy
)
GeneralEventCAP
(in
rosetta.core.conformation.signals._core_conformation_signals_
)
get()
(in
SecondaryStructureCountFilterCreatorCAP
)
get_additional_output()
(in
DockingInitialPerturbation
)
GeneralEventCAP
(in
rosetta.core.pose.signals._core_pose_signals_
)
get()
(in
SecondaryStructureFilterAP
)
get_additional_output()
(in
DockingLowRes
)
generalized_kinematic_closure
(in
rosetta.protocols
)
get()
(in
SecondaryStructureFilterCAP
)
get_additional_output()
(in
DockingLowResEnsemble
)
generalized_monte_carlo
(in
AntibodyDesignProtocolEnum
)
get()
(in
SecondaryStructureFilterCreatorAP
)
get_additional_output()
(in
DockingPrepackProtocol
)
generalized_monte_carlo
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
get()
(in
SecondaryStructureFilterCreatorCAP
)
get_additional_output()
(in
DockingProtocol
)
generalized_monte_carlo
(in
rosetta.protocols.antibody.design
)
get()
(in
SecondaryStructureHasResidueFilterAP
)
get_additional_output()
(in
DockingSlideIntoContact
)
GeneralizedKIC
(in
rosetta.protocols.generalized_kinematic_closure._protocols_generalized_kinematic_closure_
)
get()
(in
SecondaryStructureHasResidueFilterCAP
)
get_additional_output()
(in
EllipsoidalRandomizationMover
)
GeneralizedKICAP
(in
rosetta.protocols.generalized_kinematic_closure._protocols_generalized_kinematic_closure_
)
get()
(in
SecondaryStructureHasResidueFilterCreatorAP
)
get_additional_output()
(in
FaDockingSlideIntoContact
)
GeneralizedKICCAP
(in
rosetta.protocols.generalized_kinematic_closure._protocols_generalized_kinematic_closure_
)
get()
(in
SecondaryStructureHasResidueFilterCreatorCAP
)
get_additional_output()
(in
InterfaceSidechainMinMover
)
GeneralizedKICCreator
(in
rosetta.protocols.generalized_kinematic_closure._protocols_generalized_kinematic_closure_
)
get()
(in
SheetTopologyFilterAP
)
get_additional_output()
(in
SidechainMinMover
)
GeneralizedKICCreatorAP
(in
rosetta.protocols.generalized_kinematic_closure._protocols_generalized_kinematic_closure_
)
get()
(in
SheetTopologyFilterCAP
)
get_additional_output()
(in
TemperedDocking
)
GeneralizedKICCreatorCAP
(in
rosetta.protocols.generalized_kinematic_closure._protocols_generalized_kinematic_closure_
)
get()
(in
SheetTopologyFilterCreatorAP
)
get_additional_output()
(in
MPDockingMover
)
GeneralizedKICfilter
(in
rosetta.protocols.generalized_kinematic_closure.filter._protocols_generalized_kinematic_closure_filter_
)
get()
(in
SheetTopologyFilterCreatorCAP
)
get_additional_output()
(in
MPDockingSetupMover
)
GeneralizedKICfilterAP
(in
rosetta.protocols.generalized_kinematic_closure.filter._protocols_generalized_kinematic_closure_filter_
)
get()
(in
AACompositionEnergyAP
)
get_additional_output()
(in
SaneDockingProtocol
)
GeneralizedKICfilterCAP
(in
rosetta.protocols.generalized_kinematic_closure.filter._protocols_generalized_kinematic_closure_filter_
)
get()
(in
AACompositionEnergyCAP
)
get_additional_output()
(in
AddAssemblyConstraints
)
GeneralizedKICperturber
(in
rosetta.protocols.generalized_kinematic_closure.perturber._protocols_generalized_kinematic_closure_perturber_
)
get()
(in
AACompositionEnergyCreatorAP
)
get_additional_output()
(in
AssembleLinkerMover
)
GeneralizedKICperturberAP
(in
rosetta.protocols.generalized_kinematic_closure.perturber._protocols_generalized_kinematic_closure_perturber_
)
get()
(in
AACompositionEnergyCreatorCAP
)
get_additional_output()
(in
CombineChainsMover
)
GeneralizedKICperturberCAP
(in
rosetta.protocols.generalized_kinematic_closure.perturber._protocols_generalized_kinematic_closure_perturber_
)
get()
(in
SetAACompositionPotentialAP
)
get_additional_output()
(in
PostDockAssemblyScorer
)
GeneralizedKICselector
(in
rosetta.protocols.generalized_kinematic_closure.selector._protocols_generalized_kinematic_closure_selector_
)
get()
(in
SetAACompositionPotentialCAP
)
get_additional_output()
(in
BfactorFittingMover
)
GeneralizedKICselectorAP
(in
rosetta.protocols.generalized_kinematic_closure.selector._protocols_generalized_kinematic_closure_selector_
)
get()
(in
SetAACompositionPotentialCreatorAP
)
get_additional_output()
(in
DensityMorphingMover
)
GeneralizedKICselectorCAP
(in
rosetta.protocols.generalized_kinematic_closure.selector._protocols_generalized_kinematic_closure_selector_
)
get()
(in
SetAACompositionPotentialCreatorCAP
)
get_additional_output()
(in
ReportFSC
)
generate_atom_positions()
(in
rosetta.protocols.helical_bundle._protocols_helical_bundle_
)
get()
(in
SetSecStructEnergiesAP
)
get_additional_output()
(in
ScaleMapIntensities
)
generate_batch()
(in
HedgeArchive
)
get()
(in
SetSecStructEnergiesCAP
)
get_additional_output()
(in
SetupForDensityScoringMover
)
generate_batch()
(in
IterativeAbrelax
)
get()
(in
SetSecStructEnergiesCreatorAP
)
get_additional_output()
(in
ClientMover
)
generate_batch()
(in
IterativeBase
)
get()
(in
SetSecStructEnergiesCreatorCAP
)
get_additional_output()
(in
CoMTrackerCM
)
generate_batch()
(in
IterativeCentroid
)
get()
(in
HSPairPotentialAP
)
get_additional_output()
(in
EnvMover
)
generate_batch()
(in
IterativeFullatom
)
get()
(in
HSPairPotentialCAP
)
get_additional_output()
(in
ScriptCM
)
generate_batch()
(in
AbstractArchiveBase
)
get()
(in
NatbiasHelicesSheetPotentialAP
)
get_additional_output()
(in
MultipleDomainMover
)
generate_batch()
(in
ArchiveBase
)
get()
(in
NatbiasHelicesSheetPotentialCAP
)
get_additional_output()
(in
RNA_DeNovoProtocol
)
generate_batch()
(in
EvaluatedArchive
)
get()
(in
NatbiasHelixPairPotentialAP
)
get_additional_output()
(in
RNA_FragmentMover
)
generate_batch()
(in
NormalizedEvaluatedArchive
)
get()
(in
NatbiasHelixPairPotentialCAP
)
get_additional_output()
(in
RNA_LoopCloser
)
generate_batch()
(in
VarianceStatisticsArchive
)
get()
(in
NatbiasSecondaryStructureEnergyAP
)
get_additional_output()
(in
RNA_Minimizer
)
generate_bb_coordinate_constraints()
(in
rosetta.protocols.relax._protocols_relax_
)
get()
(in
NatbiasSecondaryStructureEnergyCAP
)
get_additional_output()
(in
RNA_Relaxer
)
generate_beta_database_test()
(in
rosetta.protocols.stepwise.sampler.protein._protocols_stepwise_sampler_protein_
)
get()
(in
NatbiasSecondaryStructureEnergyCreatorAP
)
get_additional_output()
(in
ReportToDB
)
generate_centroid_constraints()
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
get()
(in
NatbiasSecondaryStructureEnergyCreatorCAP
)
get_additional_output()
(in
TrajectoryReportToDB
)
generate_claims()
(in
DensityScoringClaimer
)
get()
(in
NatbiasStrandPairPotentialAP
)
get_additional_output()
(in
SetupForFibrilMover
)
generate_claims()
(in
FoldandDockClaimer
)
get()
(in
NatbiasStrandPairPotentialCAP
)
get_additional_output()
(in
BluePrintBDR
)
generate_claims()
(in
MembraneTopologyClaimer
)
get()
(in
SSPairPotentialAP
)
get_additional_output()
(in
CircularPermutation
)
generate_claims()
(in
TopologyClaimer
)
get()
(in
SSPairPotentialCAP
)
get_additional_output()
(in
MatchResiduesMover
)
generate_combinations_of_motif_fragments_by_delta_variation()
(in
MotifGraftMover
)
get()
(in
BB_PosAP
)
get_additional_output()
(in
SheetConstraintsRCG
)
generate_constraints()
(in
InvrotTarget
)
get()
(in
BB_PosCAP
)
get_additional_output()
(in
SetAACompositionPotential
)
generate_constraints()
(in
InvrotTreeNode
)
get()
(in
BetaAlphaBetaMotifAP
)
get_additional_output()
(in
SetSecStructEnergies
)
generate_constraints()
(in
InvrotTreeNodeBase
)
get()
(in
BetaAlphaBetaMotifCAP
)
get_additional_output()
(in
FlexPacker
)
generate_csts()
(in
SetupHotspotConstraintsLoopsMover
)
get()
(in
BetaAlphaBetaMotifSetAP
)
get_additional_output()
(in
FlexPepDockingAbInitio
)
generate_edges()
(in
CovalentResidueNetwork
)
get()
(in
BetaAlphaBetaMotifSetCAP
)
get_additional_output()
(in
FlexPepDockingLowRes
)
generate_edges()
(in
DistanceResidueNetwork
)
get()
(in
DimerPairingAP
)
get_additional_output()
(in
FlexPepDockingProtocol
)
generate_edges()
(in
ResidueNetwork
)
get()
(in
DimerPairingCAP
)
get_additional_output()
(in
FloppyTailMover
)
generate_empty_jump_frame()
(in
rosetta.protocols.jumping._protocols_jumping_
)
get()
(in
DimerPairingsAP
)
get_additional_output()
(in
FlxbbDesign
)
generate_frame()
(in
ResiduePairJump
)
get()
(in
DimerPairingsCAP
)
get_additional_output()
(in
FlxbbDesignPack
)
generate_from_sequence()
(in
ChemicalShiftSequence
)
get()
(in
HSSTripletAP
)
get_additional_output()
(in
InterlockAroma
)
generate_from_sequence()
(in
SequenceCoupling
)
get()
(in
HSSTripletCAP
)
get_additional_output()
(in
BDR
)
generate_from_sequence()
(in
SequenceProfile
)
get()
(in
HSSTripletSetAP
)
get_additional_output()
(in
VarLengthBuild
)
generate_fullatom_constraints()
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
get()
(in
HSSTripletSetCAP
)
get_additional_output()
(in
RemodelConstraintGenerator
)
generate_insert_map()
(in
FragSet
)
get()
(in
HelixAP
)
get_additional_output()
(in
NonlocalFrags
)
generate_inverse_rotamer_constraints()
(in
InvrotTree
)
get()
(in
HelixCAP
)
get_additional_output()
(in
TorsionFragmentMover
)
generate_jump_frags()
(in
FixTemplateJumpSetup
)
get()
(in
HelixPairingAP
)
get_additional_output()
(in
GeneralizedKIC
)
generate_jump_frags()
(in
TemplateJumpSetup
)
get()
(in
HelixPairingCAP
)
get_additional_output()
(in
AnchoredGraftMover
)
generate_jump_frags()
(in
BaseJumpSetup
)
get()
(in
HelixPairingSetAP
)
get_additional_output()
(in
CCDEndsGraftMover
)
generate_jump_frags()
(in
BasePairingLibrary
)
get()
(in
HelixPairingSetCAP
)
get_additional_output()
(in
GraftMoverBase
)
generate_jump_frags()
(in
DisulfPairingLibrary
)
get()
(in
LoopAP
)
get_additional_output()
(in
DeleteRegionMover
)
generate_jump_frags()
(in
JumpSample
)
get()
(in
LoopCAP
)
get_additional_output()
(in
InsertPoseIntoPoseMover
)
generate_jump_frags()
(in
JumpSelector
)
get()
(in
SS_BaseAP
)
get_additional_output()
(in
KeepRegionMover
)
generate_jump_frags()
(in
JumpSetup
)
get()
(in
SS_BaseCAP
)
get_additional_output()
(in
ReplaceRegionMover
)
generate_jump_frags()
(in
JumpsFromAllPairings
)
get()
(in
SS_Info2AP
)
get_additional_output()
(in
BackboneGridSampler
)
generate_jump_frags()
(in
PairingLibrary
)
get()
(in
SS_Info2CAP
)
get_additional_output()
(in
BundleGridSampler
)
generate_jump_frags()
(in
ResiduePairJumpSetup
)
get()
(in
SheetAP
)
get_additional_output()
(in
FitSimpleHelix
)
generate_jump_frags()
(in
SheetBuilder
)
get()
(in
SheetCAP
)
get_additional_output()
(in
MakeBundle
)
generate_jump_frame()
(in
rosetta.protocols.jumping._protocols_jumping_
)
get()
(in
SheetFoldTypeManagerAP
)
get_additional_output()
(in
MakeBundleHelix
)
generate_jump_frames()
(in
JumpSample
)
get()
(in
SheetFoldTypeManagerCAP
)
get_additional_output()
(in
PerturbBundle
)
generate_match_pose()
(in
MotifGraftMover
)
get()
(in
SheetSetAP
)
get_additional_output()
(in
PerturbBundleHelix
)
generate_mover_for_protocol()
(in
RosettaScriptsParser
)
get()
(in
SheetSetCAP
)
get_additional_output()
(in
BackboneTorsionPerturbation
)
generate_mover_from_job()
(in
Parser
)
get()
(in
StrandAP
)
get_additional_output()
(in
BackboneTorsionSampler
)
generate_mover_from_pose()
(in
Parser
)
get()
(in
StrandCAP
)
get_additional_output()
(in
CartesianHybridize
)
generate_mover_from_pose()
(in
RosettaScriptsParser
)
get()
(in
StrandPairingAP
)
get_additional_output()
(in
CartesianSampler
)
generate_nonstandard_residue_set()
(in
rosetta
)
get()
(in
StrandPairingCAP
)
get_additional_output()
(in
ChunkTrialMover
)
generate_pose_specific_data()
(in
EnzConstraintParameters
)
get()
(in
StrandPairingSetAP
)
get_additional_output()
(in
DomainAssembly
)
generate_relax_from_cmd()
(in
rosetta.protocols.relax._protocols_relax_
)
get()
(in
StrandPairingSetCAP
)
get_additional_output()
(in
FoldTreeHybridize
)
generate_remodel_constraints()
(in
SheetConstraintsRCG
)
get()
(in
FlexPackerAP
)
get_additional_output()
(in
HybridizeProtocol
)
generate_remodel_constraints()
(in
RemodelConstraintGenerator
)
get()
(in
FlexPackerCAP
)
get_additional_output()
(in
InsertChunkMover
)
generate_reversed()
(in
Pairing
)
get()
(in
OtherContextScoreFunctionAP
)
get_additional_output()
(in
MRMover
)
generate_roc_curve()
(in
RocCurve
)
get()
(in
OtherContextScoreFunctionCAP
)
get_additional_output()
(in
WeightedFragmentSmoothTrialMover
)
generate_scaffold_matches()
(in
MotifGraftMover
)
get()
(in
FlexbbSimAnnealerAP
)
get_additional_output()
(in
WeightedFragmentTrialMover
)
generate_search_points()
(in
CartesianSearchPattern
)
get()
(in
FlexbbSimAnnealerCAP
)
get_additional_output()
(in
IdealizeMover
)
generate_search_points()
(in
RotationSearchPattern
)
get()
(in
FlexbbEdgeAP
)
get_additional_output()
(in
BalancedKicMover
)
generate_search_points()
(in
SphericalRotationSearchPattern
)
get()
(in
FlexbbEdgeCAP
)
get_additional_output()
(in
KicMover
)
generate_sequence_claims()
(in
DensityScoringClaimer
)
get()
(in
FlexbbIGFactoryAP
)
get_additional_output()
(in
AddHydrogen
)
generate_sequence_claims()
(in
FoldandDockClaimer
)
get()
(in
FlexbbIGFactoryCAP
)
get_additional_output()
(in
AddHydrogens
)
generate_sequence_claims()
(in
MembraneTopologyClaimer
)
get()
(in
FlexbbInteractionGraphAP
)
get_additional_output()
(in
CompoundTranslate
)
generate_sequence_claims()
(in
TopologyClaimer
)
get()
(in
FlexbbInteractionGraphCAP
)
get_additional_output()
(in
ComputeLigandRDF
)
generate_shannon_points()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
get()
(in
FlexbbNodeAP
)
get_additional_output()
(in
FinalMinimizer
)
generate_sub_fragment()
(in
AnnotatedFragData
)
get()
(in
FlexbbNodeCAP
)
get_additional_output()
(in
GrowLigand
)
generate_sub_fragment()
(in
FragData
)
get()
(in
FlexbbSparseMatrixIndexAP
)
get_additional_output()
(in
HighResDocker
)
generate_sub_frame()
(in
Frame
)
get()
(in
FlexbbSparseMatrixIndexCAP
)
get_additional_output()
(in
InterfaceScoreCalculator
)
generate_symmetry_claims()
(in
FoldandDockClaimer
)
get()
(in
MinimalistFlexbbEdgeAP
)
get_additional_output()
(in
LigandDesign
)
generate_symmetry_claims()
(in
MembraneTopologyClaimer
)
get()
(in
MinimalistFlexbbEdgeCAP
)
get_additional_output()
(in
MinimizeBackbone
)
generate_symmetry_claims()
(in
SymmetryClaimer
)
get()
(in
MinimalistFlexbbInteractionGraphAP
)
get_additional_output()
(in
MinimizeLigand
)
generate_symmetry_claims()
(in
TopologyClaimer
)
get()
(in
MinimalistFlexbbInteractionGraphCAP
)
get_additional_output()
(in
RandomConformerMover
)
generate_targets_and_inverse_rotamers()
(in
InvrotTree
)
get()
(in
MinimalistFlexbbNodeAP
)
get_additional_output()
(in
RandomConformers
)
generate_targets_and_inverse_rotamers()
(in
TheozymeInvrotTree
)
get()
(in
MinimalistFlexbbNodeCAP
)
get_additional_output()
(in
RigidSearchMover
)
generate_task_op_all_cdr_design()
(in
AntibodySeqDesignTFCreator
)
get()
(in
OTFFlexbbEdgeAP
)
get_additional_output()
(in
Rotate
)
generate_task_op_cdr_design()
(in
AntibodySeqDesignTFCreator
)
get()
(in
OTFFlexbbEdgeCAP
)
get_additional_output()
(in
Rotates
)
generate_task_op_cdr_profiles()
(in
AntibodySeqDesignTFCreator
)
get()
(in
OTFFlexbbInteractionGraphAP
)
get_additional_output()
(in
SlideTogether
)
generate_taskfactory_and_add_task_awareness()
(in
rosetta.protocols.protein_interface_design.movers._protocols_protein_interface_design_movers_
)
get()
(in
OTFFlexbbInteractionGraphCAP
)
get_additional_output()
(in
StartFrom
)
generate_tf_seq_design()
(in
AntibodySeqDesignTFCreator
)
get()
(in
OTFFlexbbNodeAP
)
get_additional_output()
(in
TetherLigand
)
generate_tf_seq_design_graft_design()
(in
AntibodySeqDesignTFCreator
)
get()
(in
OTFFlexbbNodeCAP
)
get_additional_output()
(in
Transform
)
generate_unique_name()
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
get()
(in
PrecomputedFlexbbInteractionGraphAP
)
get_additional_output()
(in
Translate
)
generate_unique_structure_id()
(in
rosetta.protocols.wum._protocols_wum_
)
get()
(in
PrecomputedFlexbbInteractionGraphCAP
)
get_additional_output()
(in
UnconstrainedTorsionsMover
)
generateIcosahedralSamples()
(in
UniformRotationSampler
)
get()
(in
FlexbbRotamerSetAP
)
get_additional_output()
(in
WriteLigandMolFile
)
GenerateMap()
(in
MapHotspot
)
get()
(in
FlexbbRotamerSetCAP
)
get_additional_output()
(in
LoopBuildMover
)
generates_primary_hits()
(in
ClassicMatchAlgorithm
)
get()
(in
FlexbbRotamerSetsAP
)
get_additional_output()
(in
LoopmodelWrapper
)
generates_primary_hits()
(in
DownstreamAlgorithm
)
get()
(in
FlexbbRotamerSetsCAP
)
get_additional_output()
(in
LoopBuilder
)
generates_primary_hits()
(in
SecondaryMatcherToDownstreamResidue
)
get()
(in
FlexPepDockingAbInitioAP
)
get_additional_output()
(in
LoopModeler
)
generates_primary_hits()
(in
SecondaryMatcherToUpstreamResidue
)
get()
(in
FlexPepDockingAbInitioCAP
)
get_additional_output()
(in
LoopMover
)
generates_primary_hits()
(in
WriteUpstreamCoordinateKinemage
)
get()
(in
FlexPepDockingFlagsAP
)
get_additional_output()
(in
LoopProtocol
)
generations()
(in
GeneticAlgorithm
)
get()
(in
FlexPepDockingFlagsCAP
)
get_additional_output()
(in
MinimizationRefiner
)
generations()
(in
GeneticAlgorithmBase
)
get()
(in
FlexPepDockingLowResAP
)
get_additional_output()
(in
RepackingRefiner
)
generations_checkpoint_filename()
(in
GeneticAlgorithm
)
get()
(in
FlexPepDockingLowResCAP
)
get_additional_output()
(in
RotamerTrialsRefiner
)
generations_checkpoint_filename()
(in
GeneticAlgorithmBase
)
get()
(in
FlexPepDockingPoseMetricsAP
)
get_additional_output()
(in
LegacyKicSampler
)
GenericJobInputter
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
get()
(in
FlexPepDockingPoseMetricsCAP
)
get_additional_output()
(in
AcceptanceCheck
)
GenericJobInputterAP
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
get()
(in
FlexPepDockingProtocolAP
)
get_additional_output()
(in
LoopFilter
)
GenericJobInputterCAP
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
get()
(in
FlexPepDockingProtocolCAP
)
get_additional_output()
(in
LoopMoverGroup
)
GenericJobInputterCreator
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
get()
(in
FlexPepDockingProtocolCreatorAP
)
get_additional_output()
(in
PrepareForCentroid
)
GenericJobInputterCreatorAP
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
get()
(in
FlexPepDockingProtocolCreatorCAP
)
get_additional_output()
(in
PrepareForFullatom
)
GenericJobInputterCreatorCAP
(in
rosetta.protocols.comparative_modeling._protocols_comparative_modeling_
)
get()
(in
FloppyTailMoverAP
)
get_additional_output()
(in
FastGapMover
)
GenericMonteCarloMover
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
get()
(in
FloppyTailMoverCAP
)
get_additional_output()
(in
LoopHashDiversifier
)
GenericMonteCarloMoverAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
get()
(in
CombinedTaskOperationAP
)
get_additional_output()
(in
LoopHashLibrary
)
GenericMonteCarloMoverCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
get()
(in
CombinedTaskOperationCAP
)
get_additional_output()
(in
LoopHashMoverWrapper
)
GenericMonteCarloMoverCreator
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
get()
(in
DesignTaskAP
)
get_additional_output()
(in
LoopHashRelaxProtocol
)
GenericMonteCarloMoverCreatorAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
get()
(in
DesignTaskCAP
)
get_additional_output()
(in
Mover_LoopHashRefine
)
GenericMonteCarloMoverCreatorCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
get()
(in
DesignTask_LayerAP
)
get_additional_output()
(in
FoldTreeFromLoops
)
GenericResidueConnectionData
(in
rosetta.core.scoring.etable.etrie._core_scoring_etable_etrie_
)
get()
(in
DesignTask_LayerCAP
)
get_additional_output()
(in
CCDLoopClosureMover
)
GenericResidueConnectionDataAP
(in
rosetta.core.scoring.etable.etrie._core_scoring_etable_etrie_
)
get()
(in
DesignTask_NormalAP
)
get_additional_output()
(in
FASelectSlidingWindowLoopClosure
)
GenericResidueConnectionDataCAP
(in
rosetta.core.scoring.etable.etrie._core_scoring_etable_etrie_
)
get()
(in
DesignTask_NormalCAP
)
get_additional_output()
(in
SlidingWindowLoopClosure
)
genetic_algorithm
(in
rosetta.protocols
)
get()
(in
FilterStructsAP
)
get_additional_output()
(in
WidthFirstSlidingWindowLoopClosure
)
GeneticAlgorithm
(in
rosetta.protocols.genetic_algorithm._protocols_genetic_algorithm_
)
get()
(in
FilterStructsCAP
)
get_additional_output()
(in
KinematicMover
)
GeneticAlgorithmAP
(in
rosetta.protocols.genetic_algorithm._protocols_genetic_algorithm_
)
get()
(in
FilterStructs_PackstatAP
)
get_additional_output()
(in
KinematicWrapper
)
GeneticAlgorithmBase
(in
rosetta.protocols.genetic_algorithm._protocols_genetic_algorithm_
)
get()
(in
FilterStructs_PackstatCAP
)
get_additional_output()
(in
LoopCM
)
GeneticAlgorithmBaseAP
(in
rosetta.protocols.genetic_algorithm._protocols_genetic_algorithm_
)
get()
(in
FilterStructs_TotalChargeAP
)
get_additional_output()
(in
LoopRefineInnerCycle
)
GeneticAlgorithmBaseCAP
(in
rosetta.protocols.genetic_algorithm._protocols_genetic_algorithm_
)
get()
(in
FilterStructs_TotalChargeCAP
)
get_additional_output()
(in
LoopRefineInnerCycleContainer
)
GeneticAlgorithmCAP
(in
rosetta.protocols.genetic_algorithm._protocols_genetic_algorithm_
)
get()
(in
FlxbbDesignAP
)
get_additional_output()
(in
RepackTrial
)
GenPharmacophore
(in
rosetta.protocols.pockets._protocols_pockets_
)
get()
(in
FlxbbDesignCAP
)
get_additional_output()
(in
ShearMinCCDTrial
)
GenPharmacophoreAP
(in
rosetta.protocols.pockets._protocols_pockets_
)
get()
(in
FlxbbDesignCreatorAP
)
get_additional_output()
(in
SmallMinCCDTrial
)
GenPharmacophoreCAP
(in
rosetta.protocols.pockets._protocols_pockets_
)
get()
(in
FlxbbDesignCreatorCAP
)
get_additional_output()
(in
MakeRotLibMover
)
genWigner_ds()
(in
SO3coeffs
)
get()
(in
FlxbbDesignPackAP
)
get_additional_output()
(in
MatcherMover
)
geo_dim_type_from_name()
(in
HBondTypeManager
)
get()
(in
FlxbbDesignPackCAP
)
get_additional_output()
(in
ExtractSubposeMover
)
geom_cst_id()
(in
DownstreamAlgorithm
)
get()
(in
InterlockAromaAP
)
get_additional_output()
(in
MatDesGreedyOptMutationMover
)
geom_csts_downstream_output()
(in
MatcherTask
)
get()
(in
InterlockAromaCAP
)
get_additional_output()
(in
SchemePlaceMotifsMover
)
geom_id()
(in
WriteUpstreamHitKinemage
)
get()
(in
LayerDesignOperationAP
)
get_additional_output()
(in
SymDofMover
)
geom_sol
(in
ScoreType
)
get()
(in
LayerDesignOperationCAP
)
get_additional_output()
(in
CartesianMD
)
geom_sol
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
LayerDesignOperationCreatorAP
)
get_additional_output()
(in
MDBase
)
geom_sol
(in
rosetta.core.scoring
)
get()
(in
LayerDesignOperationCreatorCAP
)
get_additional_output()
(in
MedalExchangeMover
)
geom_sol
(in
rosetta
)
get()
(in
BridgeAP
)
get_additional_output()
(in
MedalMover
)
geom_sol_fast
(in
ScoreType
)
get()
(in
BridgeCAP
)
get_additional_output()
(in
AddMPLigandMover
)
geom_sol_fast
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
BuildInstructionAP
)
get_additional_output()
(in
AddMembraneMover
)
geom_sol_fast
(in
rosetta.core.scoring
)
get()
(in
BuildInstructionCAP
)
get_additional_output()
(in
FlipMover
)
geom_sol_fast
(in
rosetta
)
get()
(in
BuildManagerAP
)
get_additional_output()
(in
MembranePositionFromTopologyMover
)
geom_sol_fast_intra_RNA
(in
ScoreType
)
get()
(in
BuildManagerCAP
)
get_additional_output()
(in
RandomPositionRotationMover
)
geom_sol_fast_intra_RNA
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
ConnectRightAP
)
get_additional_output()
(in
RandomPositionTranslationMover
)
geom_sol_fast_intra_RNA
(in
rosetta.core.scoring
)
get()
(in
ConnectRightCAP
)
get_additional_output()
(in
RotationMover
)
geom_sol_fast_intra_RNA
(in
rosetta
)
get()
(in
CountFromLeftAP
)
get_additional_output()
(in
SetMembraneCenterMover
)
geom_sol_interres_path_distance_cutoff()
(in
EnergyMethodOptions
)
get()
(in
CountFromLeftCAP
)
get_additional_output()
(in
SetMembraneNormalMover
)
geom_sol_intra_RNA
(in
ScoreType
)
get()
(in
GrowLeftAP
)
get_additional_output()
(in
SetMembranePositionMover
)
geom_sol_intra_RNA
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
GrowLeftCAP
)
get_additional_output()
(in
TransformIntoMembraneMover
)
geom_sol_intra_RNA
(in
rosetta.core.scoring
)
get()
(in
GrowRightAP
)
get_additional_output()
(in
TranslationMover
)
geom_sol_intra_RNA
(in
rosetta
)
get()
(in
GrowRightCAP
)
get_additional_output()
(in
TranslationRotationMover
)
geom_sol_intrares_path_distance_cutoff()
(in
EnergyMethodOptions
)
get()
(in
IntervalAP
)
get_additional_output()
(in
SymmetricAddMembraneMover
)
geom_solv_pair_nblist
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
IntervalCAP
)
get_additional_output()
(in
VisualizeEmbeddingMover
)
geom_solv_pair_nblist
(in
min_pair_data
)
get()
(in
RelativeConnectRightAP
)
get_additional_output()
(in
VisualizeMembraneMover
)
geom_solv_pair_nblist
(in
rosetta.core.scoring
)
get()
(in
RelativeConnectRightCAP
)
get_additional_output()
(in
ZincHeterodimerMover
)
geom_solv_pair_nblist
(in
rosetta
)
get()
(in
RelativeSequencePositionAP
)
get_additional_output()
(in
MotifGraftMover
)
geometric_dimension()
(in
Polynomial_1d
)
get()
(in
RelativeSequencePositionCAP
)
get_additional_output()
(in
MotifDnaPacker
)
geometric_sol_one_way_bb_bb()
(in
GeometricSolEnergyEvaluator
)
get()
(in
SegmentInsertAP
)
get_additional_output()
(in
CompositionMover
)
geometric_sol_one_way_sc()
(in
GeometricSolEnergyEvaluator
)
get()
(in
SegmentInsertCAP
)
get_additional_output()
(in
CycleMover
)
geometric_solvation
(in
rosetta.core.scoring
)
get()
(in
SegmentRebuildAP
)
get_additional_output()
(in
CyclicMover
)
GeometricFunc
(in
rosetta.protocols.moves._protocols_moves_
)
get()
(in
SegmentRebuildCAP
)
get_additional_output()
(in
DsspMover
)
GeometricFuncAP
(in
rosetta.protocols.moves._protocols_moves_
)
get()
(in
SegmentSwapAP
)
get_additional_output()
(in
FilterMover
)
GeometricFuncCAP
(in
rosetta.protocols.moves._protocols_moves_
)
get()
(in
SegmentSwapCAP
)
get_additional_output()
(in
FilterReporterMover
)
GeometricSolEnergyEvaluator
(in
rosetta.core.scoring.geometric_solvation._core_scoring_geometric_solvation_
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_additional_output()
(in
IfMover
)
GeometricSolEnergyEvaluatorAP
(in
rosetta.core.scoring.geometric_solvation._core_scoring_geometric_solvation_
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_additional_output()
(in
IteratedConvergenceMover
)
GeometricSolEnergyEvaluatorCAP
(in
rosetta.core.scoring.geometric_solvation._core_scoring_geometric_solvation_
)
get()
(in
BDRAP
)
get_additional_output()
(in
JumpOutMover
)
GeometricSolvationFeatures
(in
rosetta.protocols.features._protocols_features_
)
get()
(in
BDRCAP
)
get_additional_output()
(in
MCShowMover
)
GeometricSolvationFeaturesAP
(in
rosetta.protocols.features._protocols_features_
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_additional_output()
(in
MonteCarloUtil
)
GeometricSolvationFeaturesCAP
(in
rosetta.protocols.features._protocols_features_
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_additional_output()
(in
MoveMapMover
)
GeometricSolvationFeaturesCreator
(in
rosetta.protocols.features._protocols_features_
)
get()
(in
VarLengthBuildAP
)
get_additional_output()
(in
Mover
)
GeometricSolvationFeaturesCreatorAP
(in
rosetta.protocols.features._protocols_features_
)
get()
(in
VarLengthBuildCAP
)
get_additional_output()
(in
MoverApplyingMover
)
GeometricSolvationFeaturesCreatorCAP
(in
rosetta.protocols.features._protocols_features_
)
get()
(in
InvrotTreeRCGAP
)
get_additional_output()
(in
MoverContainer
)
geometry
(in
rosetta.numeric
)
get()
(in
InvrotTreeRCGCAP
)
get_additional_output()
(in
MoverForPoseList
)
geometry
(in
rosetta.protocols.membrane
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_additional_output()
(in
NullMover
)
geometry()
(in
FragmentBiasAssigner
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_additional_output()
(in
PDBDumpMover
)
geometry_is_initialized()
(in
HSSTriplet
)
get()
(in
RemodelConstraintGeneratorAP
)
get_additional_output()
(in
ProfilerMover
)
GeometryFilter
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
get()
(in
RemodelConstraintGeneratorCAP
)
get_additional_output()
(in
PyMolMover
)
GeometryFilterAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
get()
(in
RemodelEnzdesCstModuleAP
)
get_additional_output()
(in
RampingMover
)
GeometryFilterCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
get()
(in
RemodelEnzdesCstModuleCAP
)
get_additional_output()
(in
RandomMover
)
GeometryFilterCreator
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
get()
(in
RemodelRotamerLinksAP
)
get_additional_output()
(in
RepeatMover
)
GeometryFilterCreatorAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
get()
(in
RemodelRotamerLinksCAP
)
get_additional_output()
(in
SequenceMover
)
GeometryFilterCreatorCAP
(in
rosetta.protocols.simple_filters._protocols_simple_filters_
)
get()
(in
ResidueVicinityInfoAP
)
get_additional_output()
(in
StructureRestrictor
)
GeometrySecMatchRPE
(in
rosetta.protocols.match.downstream._protocols_match_downstream_
)
get()
(in
ResidueVicinityInfoCAP
)
get_additional_output()
(in
TrialMover
)
GeometrySecMatchRPEAP
(in
rosetta.protocols.match.downstream._protocols_match_downstream_
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_additional_output()
(in
VectorPoseMover
)
GeometrySecMatchRPECAP
(in
rosetta.protocols.match.downstream._protocols_match_downstream_
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_additional_output()
(in
WhileMover
)
GeomSampleInfo
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
get()
(in
AllowPdbIdFilterAP
)
get_additional_output()
(in
StructAvrgMover
)
GeomSampleInfoAP
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
get()
(in
AllowPdbIdFilterCAP
)
get_additional_output()
(in
NcbbDockDesignProtocol
)
GeomSampleInfoCAP
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
get()
(in
BestTotalScoreSelectorAP
)
get_additional_output()
(in
OopCreatorMover
)
get()
(in
ComparingTracerAP
)
get()
(in
BestTotalScoreSelectorCAP
)
get_additional_output()
(in
OopDockDesignProtocol
)
get()
(in
ComparingTracerCAP
)
get()
(in
BoundedCollector_CompareTotalScoreAP
)
get_additional_output()
(in
CartesianNormalModeMover
)
get()
(in
DynamicProfileThisAP
)
get()
(in
BoundedCollector_CompareTotalScoreCAP
)
get_additional_output()
(in
NormalModeMinimizer
)
get()
(in
DynamicProfileThisCAP
)
get()
(in
BoundedCollector_T_protocols_frag_picker_CompareTotalScore_TAP
)
get_additional_output()
(in
NormalModeRelaxMover
)
get()
(in
EmitterAP
)
get()
(in
BoundedCollector_T_protocols_frag_picker_CompareTotalScore_TCAP
)
get_additional_output()
(in
TorsionNormalModeMover
)
get()
(in
EmitterCAP
)
get()
(in
CS2ndShiftAP
)
get_additional_output()
(in
SetupPoissonBoltzmannPotential
)
get()
(in
JsonEmitterAP
)
get()
(in
CS2ndShiftCAP
)
get_additional_output()
(in
AddChainBreak
)
get()
(in
JsonEmitterCAP
)
get()
(in
CSTalosIOAP
)
get_additional_output()
(in
AddSidechainConstraintsToHotspots
)
get()
(in
MemTracerAP
)
get()
(in
CSTalosIOCAP
)
get_additional_output()
(in
BackrubDDMover
)
get()
(in
MemTracerCAP
)
get()
(in
CandidatesCollectorAP
)
get_additional_output()
(in
BestHotspotCstMover
)
get()
(in
MetricValueBaseAP
)
get()
(in
CandidatesCollectorCAP
)
get_additional_output()
(in
BuildAlaPose
)
get()
(in
MetricValueBaseCAP
)
get()
(in
CompareByScoreCombinationAP
)
get_additional_output()
(in
DesignMinimizeHbonds
)
get()
(in
ProfileThisAP
)
get()
(in
CompareByScoreCombinationCAP
)
get_additional_output()
(in
DisulfideMover
)
get()
(in
ProfileThisCAP
)
get()
(in
CompareQueryPositionAP
)
get_additional_output()
(in
DockAndRetrieveSidechains
)
get()
(in
PyTracerAP
)
get()
(in
CompareQueryPositionCAP
)
get_additional_output()
(in
DockWithHotspotMover
)
get()
(in
PyTracerCAP
)
get()
(in
CompareScoreComponentAP
)
get_additional_output()
(in
FavorNativeResiduePreCycle
)
get()
(in
TracerAP
)
get()
(in
CompareScoreComponentCAP
)
get_additional_output()
(in
FavorNonNativeResiduePreCycle
)
get()
(in
TracerCAP
)
get()
(in
CompareTotalScoreAP
)
get_additional_output()
(in
HotspotDisjointedFoldTreeMover
)
get()
(in
TracerManagerAP
)
get()
(in
CompareTotalScoreCAP
)
get_additional_output()
(in
HotspotHasherMover
)
get()
(in
TracerManagerCAP
)
get()
(in
CompositeFragmentSelectorAP
)
get_additional_output()
(in
InterfaceRecapitulationMover
)
get()
(in
TracerOptionsAP
)
get()
(in
CompositeFragmentSelectorCAP
)
get_additional_output()
(in
LoopFinder
)
get()
(in
TracerOptionsCAP
)
get()
(in
ContactAP
)
get_additional_output()
(in
LoopLengthChange
)
get()
(in
TracerToFileAP
)
get()
(in
ContactCAP
)
get_additional_output()
(in
LoopMoverFromCommandLine
)
get()
(in
TracerToFileCAP
)
get()
(in
ContactCountsAP
)
get_additional_output()
(in
LoopOver
)
get()
(in
YamlEmitterAP
)
get()
(in
ContactCountsCAP
)
get_additional_output()
(in
LoopRemodel
)
get()
(in
YamlEmitterCAP
)
get()
(in
CustomScoreSelectorAP
)
get_additional_output()
(in
MapHotspot
)
get()
(in
basic_otstream_T_char_std_char_traits_T_char_T__TAP
)
get()
(in
CustomScoreSelectorCAP
)
get_additional_output()
(in
PatchdockTransform
)
get()
(in
basic_otstream_T_char_std_char_traits_T_char_T__TCAP
)
get()
(in
DenyPdbIdFilterAP
)
get_additional_output()
(in
PeptideStapleDesignMover
)
get()
(in
DatabaseSessionLoaderAP
)
get()
(in
DenyPdbIdFilterCAP
)
get_additional_output()
(in
PlaceOnLoop
)
get()
(in
DatabaseSessionLoaderCAP
)
get()
(in
DiversifyCrmsdByClusteringAP
)
get_additional_output()
(in
PlaceSimultaneouslyMover
)
get()
(in
DatabaseSessionLoaderCreatorAP
)
get()
(in
DiversifyCrmsdByClusteringCAP
)
get_additional_output()
(in
PlaceStubMover
)
get()
(in
DatabaseSessionLoaderCreatorCAP
)
get()
(in
DiversifyCrmsdSelectorAP
)
get_additional_output()
(in
PlacementAuctionMover
)
get()
(in
DatabaseSessionOptionsAP
)
get()
(in
DiversifyCrmsdSelectorCAP
)
get_additional_output()
(in
PlacementMinimizationMover
)
get()
(in
DatabaseSessionOptionsCAP
)
get()
(in
DiversifyDihedralsSelectorAP
)
get_additional_output()
(in
PrepackMover
)
get()
(in
DatabaseSessionOptionsCreatorAP
)
get()
(in
DiversifyDihedralsSelectorCAP
)
get_additional_output()
(in
ProteinInterfaceMultiStateDesignMover
)
get()
(in
DatabaseSessionOptionsCreatorCAP
)
get()
(in
FragmentCandidateAP
)
get_additional_output()
(in
RandomMutation
)
get()
(in
InsertGeneratorAP
)
get()
(in
FragmentCandidateCAP
)
get_additional_output()
(in
RepackMinimize
)
get()
(in
InsertGeneratorCAP
)
get()
(in
FragmentComparatorBaseAP
)
get_additional_output()
(in
SaveAndRetrieveSidechains
)
get()
(in
RowDataBaseAP
)
get()
(in
FragmentComparatorBaseCAP
)
get_additional_output()
(in
SetAtomTree
)
get()
(in
RowDataBaseCAP
)
get()
(in
FragmentPickerAP
)
get_additional_output()
(in
SetTemperatureFactor
)
get()
(in
ColumnAP
)
get()
(in
FragmentPickerCAP
)
get_additional_output()
(in
SetupHotspotConstraintsLoopsMover
)
get()
(in
ColumnCAP
)
get()
(in
FragmentSelectingRuleAP
)
get_additional_output()
(in
SetupHotspotConstraintsMover
)
get()
(in
ConstraintAP
)
get()
(in
FragmentSelectingRuleCAP
)
get_additional_output()
(in
ShoveResidueMover
)
get()
(in
ConstraintCAP
)
get()
(in
GrabAllCollectorAP
)
get_additional_output()
(in
SpinMover
)
get()
(in
DbBigIntAP
)
get()
(in
GrabAllCollectorCAP
)
get_additional_output()
(in
SubroutineMover
)
get()
(in
DbBigIntCAP
)
get()
(in
JCouplingIOAP
)
get_additional_output()
(in
TaskAwareCsts
)
get()
(in
DbDataTypeAP
)
get()
(in
JCouplingIOCAP
)
get_additional_output()
(in
TopologyBrokerMover
)
get()
(in
DbDataTypeCAP
)
get()
(in
LAMBEGO_IOAP
)
get_additional_output()
(in
TryRotamers
)
get()
(in
DbDoubleAP
)
get()
(in
LAMBEGO_IOCAP
)
get_additional_output()
(in
VLB
)
get()
(in
DbDoubleCAP
)
get()
(in
PdbIdChunkFilterAP
)
get_additional_output()
(in
AutoRBMover
)
get()
(in
DbIntegerAP
)
get()
(in
PdbIdChunkFilterCAP
)
get_additional_output()
(in
FragInsertAndAlignMover
)
get()
(in
DbIntegerCAP
)
get()
(in
PhiPsiTalosIOAP
)
get_additional_output()
(in
GaussianRBSegmentMover
)
get()
(in
DbRealAP
)
get()
(in
PhiPsiTalosIOCAP
)
get_additional_output()
(in
HelicalGaussianMover
)
get()
(in
DbRealCAP
)
get()
(in
QuotaDebugAP
)
get_additional_output()
(in
IdealizeHelicesMover
)
get()
(in
DbTextAP
)
get()
(in
QuotaDebugCAP
)
get_additional_output()
(in
MakeStarTopologyMover
)
get()
(in
DbTextCAP
)
get()
(in
SidechainContactDistCutoffAP
)
get_additional_output()
(in
OptimizeThreadingMover
)
get()
(in
DbTextKeyAP
)
get()
(in
SidechainContactDistCutoffCAP
)
get_additional_output()
(in
RBSegmentMover
)
get()
(in
DbTextKeyCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_additional_output()
(in
RBSegmentRelax
)
get()
(in
DbUUIDAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_additional_output()
(in
SequenceShiftMover
)
get()
(in
DbUUIDCAP
)
get()
(in
TorsionBinIOAP
)
get_additional_output()
(in
StrandTwistingMover
)
get()
(in
ForeignKeyAP
)
get()
(in
TorsionBinIOCAP
)
get_additional_output()
(in
AtomCoordinateCstMover
)
get()
(in
ForeignKeyCAP
)
get()
(in
VallChunkAP
)
get_additional_output()
(in
CentroidRelax
)
get()
(in
GreaterThanConstraintAP
)
get()
(in
VallChunkCAP
)
get_additional_output()
(in
ClassicRelax
)
get()
(in
GreaterThanConstraintCAP
)
get()
(in
VallChunkFilterAP
)
get_additional_output()
(in
FastRelax
)
get()
(in
IndexAP
)
get()
(in
VallChunkFilterCAP
)
get_additional_output()
(in
LocalRelax
)
get()
(in
IndexCAP
)
get()
(in
VallProviderAP
)
get_additional_output()
(in
MiniRelax
)
get()
(in
PrimaryKeyAP
)
get()
(in
VallProviderCAP
)
get_additional_output()
(in
RelaxProtocolBase
)
get()
(in
PrimaryKeyCAP
)
get()
(in
VallResidueAP
)
get_additional_output()
(in
MPFastRelaxMover
)
get()
(in
SchemaAP
)
get()
(in
VallResidueCAP
)
get_additional_output()
(in
MembraneCenterPerturbationMover
)
get()
(in
SchemaCAP
)
get()
(in
NonlocalFragsAP
)
get_additional_output()
(in
MembraneNormalPerturbationMover
)
get()
(in
UniqueConstraintAP
)
get()
(in
NonlocalFragsCAP
)
get_additional_output()
(in
MovePoseToMembraneCenterMover
)
get()
(in
UniqueConstraintCAP
)
get()
(in
NonlocalPairAP
)
get_additional_output()
(in
RigidBodyDeterministicSpinMover
)
get()
(in
BasicDataCacheAP
)
get()
(in
NonlocalPairCAP
)
get_additional_output()
(in
RigidBodyDofPerturbMover
)
get()
(in
BasicDataCacheCAP
)
get()
(in
ABEGO_SS_ConfigAP
)
get_additional_output()
(in
RigidBodyDofRandomTransMover
)
get()
(in
CacheableDataAP
)
get()
(in
ABEGO_SS_ConfigCAP
)
get_additional_output()
(in
RigidBodyDofRandomizeMover
)
get()
(in
CacheableDataCAP
)
get()
(in
ABEGO_SS_MapAP
)
get_additional_output()
(in
RigidBodyDofSeqPerturbMover
)
get()
(in
CacheableStringAP
)
get()
(in
ABEGO_SS_MapCAP
)
get_additional_output()
(in
RigidBodyDofSeqRandomizeMover
)
get()
(in
CacheableStringCAP
)
get()
(in
ABEGO_SS_PoolAP
)
get_additional_output()
(in
RigidBodyDofSeqTransMover
)
get()
(in
CacheableStringFloatMapAP
)
get()
(in
ABEGO_SS_PoolCAP
)
get_additional_output()
(in
RigidBodyDofTransMover
)
get()
(in
CacheableStringFloatMapCAP
)
get()
(in
QuotaCollectorAP
)
get_additional_output()
(in
RigidBodyMotionMover
)
get()
(in
CacheableStringMapAP
)
get()
(in
QuotaCollectorCAP
)
get_additional_output()
(in
RigidBodyMover
)
get()
(in
CacheableStringMapCAP
)
get()
(in
QuotaConfigAP
)
get_additional_output()
(in
RigidBodyPerturbMover
)
get()
(in
DataCache_CacheableDataAP
)
get()
(in
QuotaConfigCAP
)
get_additional_output()
(in
RigidBodyPerturbNoCenterMover
)
get()
(in
DataCache_CacheableDataCAP
)
get()
(in
QuotaPoolAP
)
get_additional_output()
(in
RigidBodyPerturbRandomJumpMover
)
get()
(in
DataCache_T_basic_datacache_CacheableData_T
)
get()
(in
QuotaPoolCAP
)
get_additional_output()
(in
RigidBodyRandomizeMover
)
get()
(in
DataCache_T_basic_datacache_CacheableData_TAP
)
get()
(in
QuotaSelectorAP
)
get_additional_output()
(in
RigidBodySpinMover
)
get()
(in
DataCache_T_basic_datacache_CacheableData_TCAP
)
get()
(in
QuotaSelectorCAP
)
get_additional_output()
(in
RigidBodyTransMover
)
get()
(in
DataMapAP
)
get()
(in
SecondaryStructurePoolAP
)
get_additional_output()
(in
RollMover
)
get()
(in
DataMapCAP
)
get()
(in
SecondaryStructurePoolCAP
)
get_additional_output()
(in
RotateJumpAxisMover
)
get()
(in
DiagnosticDataAP
)
get()
(in
ABEGO_SS_ScoreAP
)
get_additional_output()
(in
UniformRigidBodyCM
)
get()
(in
DiagnosticDataCAP
)
get()
(in
ABEGO_SS_ScoreCAP
)
get_additional_output()
(in
UniformRigidBodyMover
)
get()
(in
HierarchicalDataMapAP
)
get()
(in
AdaptiveScoreHistogramAP
)
get_additional_output()
(in
UniformSphereTransMover
)
get()
(in
HierarchicalDataMapCAP
)
get()
(in
AdaptiveScoreHistogramCAP
)
get_additional_output()
(in
WholeBodyRotationMover
)
get()
(in
SingletonBase_T_basic_datacache_WriteableCacheableDataFactory_TAP
)
get()
(in
AmbigCSScoreAP
)
get_additional_output()
(in
WholeBodyTranslationMover
)
get()
(in
SingletonBase_T_basic_datacache_WriteableCacheableDataFactory_TCAP
)
get()
(in
AmbigCSScoreCAP
)
get_additional_output()
(in
AdditionalOutputWrapper
)
get()
(in
WriteableCacheableDataAP
)
get()
(in
AtomBasedConstraintsScoreAP
)
get_additional_output()
(in
MultipleOutputWrapper
)
get()
(in
WriteableCacheableDataCAP
)
get()
(in
AtomBasedConstraintsScoreCAP
)
get_additional_output()
(in
MultiplePoseMover
)
get()
(in
WriteableCacheableDataCreatorAP
)
get()
(in
AtomPairConstraintsDataAP
)
get_additional_output()
(in
ParsedProtocol
)
get()
(in
WriteableCacheableDataCreatorCAP
)
get()
(in
AtomPairConstraintsDataCAP
)
get_additional_output()
(in
SavePoseMover
)
get()
(in
WriteableCacheableDataFactoryAP
)
get()
(in
AtomPairConstraintsScoreAP
)
get_additional_output()
(in
RotamerRecoveryMover
)
get()
(in
WriteableCacheableDataFactoryCAP
)
get()
(in
AtomPairConstraintsScoreCAP
)
get_additional_output()
(in
CAcstGenerator
)
get()
(in
WriteableCacheableMapAP
)
get()
(in
BFactorAP
)
get_additional_output()
(in
CloseFold
)
get()
(in
WriteableCacheableMapCAP
)
get()
(in
BFactorCAP
)
get_additional_output()
(in
CoordinateCst
)
get()
(in
TimerAP
)
get()
(in
CSScoreAP
)
get_additional_output()
(in
DefineMovableLoops
)
get()
(in
TimerCAP
)
get()
(in
CSScoreCAP
)
get_additional_output()
(in
GrowPeptides
)
get()
(in
float4AP
)
get()
(in
CachingScoringMethodAP
)
get_additional_output()
(in
SeedFoldTree
)
get()
(in
float4CAP
)
get()
(in
CachingScoringMethodCAP
)
get_additional_output()
(in
SeedSetupMover
)
get()
(in
DbMoverMessageListenerAP
)
get()
(in
ConstScoreAP
)
get_additional_output()
(in
SegmentHybridizer
)
get()
(in
DbMoverMessageListenerCAP
)
get()
(in
ConstScoreCAP
)
get_additional_output()
(in
SwapSegment
)
get()
(in
MessageListenerAP
)
get()
(in
DihedralConstraintsScoreAP
)
get_additional_output()
(in
EvaluatedTrialMover
)
get()
(in
MessageListenerCAP
)
get()
(in
DihedralConstraintsScoreCAP
)
get_additional_output()
(in
AddCavitiesMover
)
get()
(in
MessageListenerFactoryAP
)
get()
(in
DisulfideDistanceAP
)
get_additional_output()
(in
AddChainMover
)
get()
(in
MessageListenerFactoryCAP
)
get()
(in
DisulfideDistanceCAP
)
get_additional_output()
(in
AddConstraintsToCurrentConformationMover
)
get()
(in
SingletonBase_T_basic_message_listening_MessageListenerFactory_TAP
)
get()
(in
DisulfideIdentityAP
)
get_additional_output()
(in
AddJobPairData
)
get()
(in
SingletonBase_T_basic_message_listening_MessageListenerFactory_TCAP
)
get()
(in
DisulfideIdentityCAP
)
get_additional_output()
(in
AlignChainMover
)
get()
(in
FallbackConfigurationAP
)
get()
(in
FourAtomsConstraintDataAP
)
get_additional_output()
(in
BBConRotMover
)
get()
(in
FallbackConfigurationCAP
)
get()
(in
FourAtomsConstraintDataCAP
)
get_additional_output()
(in
BBG8T3AMover
)
get()
(in
FallbackConfigurationCreatorAP
)
get()
(in
FragmentAllAtomCrmsdAP
)
get_additional_output()
(in
BBGaussianMover
)
get()
(in
FallbackConfigurationCreatorCAP
)
get()
(in
FragmentAllAtomCrmsdCAP
)
get_additional_output()
(in
BackboneMover
)
get()
(in
FallbackConfigurationFactoryAP
)
get()
(in
FragmentChunkCrmsAP
)
get_additional_output()
(in
BoltzmannRotamerMover
)
get()
(in
FallbackConfigurationFactoryCAP
)
get()
(in
FragmentChunkCrmsCAP
)
get_additional_output()
(in
ChainSplitMover
)
get()
(in
JobOptionsAP
)
get()
(in
FragmentCrmsdAP
)
get_additional_output()
(in
ChangeAndResetFoldTreeMover
)
get()
(in
JobOptionsCAP
)
get()
(in
FragmentCrmsdCAP
)
get_additional_output()
(in
ClearConstraintsMover
)
get()
(in
LazyResourceManagerAP
)
get()
(in
FragmentCrmsdResDepthAP
)
get_additional_output()
(in
CombinePoseMover
)
get()
(in
LazyResourceManagerCAP
)
get()
(in
FragmentCrmsdResDepthCAP
)
get_additional_output()
(in
ConsensusDesignMover
)
get()
(in
ResourceConfigurationAP
)
get()
(in
FragmentDMEAP
)
get_additional_output()
(in
ConstrainToIdealMover
)
get()
(in
ResourceConfigurationCAP
)
get()
(in
FragmentDMECAP
)
get_additional_output()
(in
ConstraintSetMover
)
get()
(in
ResourceLoaderAP
)
get()
(in
FragmentScoreManagerAP
)
get_additional_output()
(in
ContingentAcceptMover
)
get()
(in
ResourceLoaderCAP
)
get()
(in
FragmentScoreManagerCAP
)
get_additional_output()
(in
CopyDofMover
)
get()
(in
ResourceLoaderCreatorAP
)
get()
(in
FragmentScoreMapAP
)
get_additional_output()
(in
CoupledMover
)
get()
(in
ResourceLoaderCreatorCAP
)
get()
(in
FragmentScoreMapCAP
)
get_additional_output()
(in
CutChainMover
)
get()
(in
ResourceLoaderFactoryAP
)
get()
(in
FragmentScoringMethodAP
)
get_additional_output()
(in
CyclizationMover
)
get()
(in
ResourceLoaderFactoryCAP
)
get()
(in
FragmentScoringMethodCAP
)
get_additional_output()
(in
DME_FilterMover
)
get()
(in
ResourceLocatorAP
)
get()
(in
GunnCostAP
)
get_additional_output()
(in
DeleteChainsMover
)
get()
(in
ResourceLocatorCAP
)
get()
(in
GunnCostCAP
)
get_additional_output()
(in
DesignRepackMover
)
get()
(in
ResourceLocatorCreatorAP
)
get()
(in
GunnCostScoreAP
)
get_additional_output()
(in
DisulfideInsertionMover
)
get()
(in
ResourceLocatorCreatorCAP
)
get()
(in
GunnCostScoreCAP
)
get_additional_output()
(in
DumpPdb
)
get()
(in
ResourceLocatorFactoryAP
)
get()
(in
GunnTupleAP
)
get_additional_output()
(in
EnergyCutRotamerTrialsMinMover
)
get()
(in
ResourceLocatorFactoryCAP
)
get()
(in
GunnTupleCAP
)
get_additional_output()
(in
EnergyCutRotamerTrialsMover
)
get()
(in
ResourceManagerAP
)
get()
(in
HydrophobicityProfileSimilarityAP
)
get_additional_output()
(in
ExtendedPoseMover
)
get()
(in
ResourceManagerCAP
)
get()
(in
HydrophobicityProfileSimilarityCAP
)
get_additional_output()
(in
FavorSequenceProfile
)
get()
(in
ResourceManagerCreatorAP
)
get()
(in
HydrophobicitySimilarityAP
)
get_additional_output()
(in
FavorSymmetricSequence
)
get()
(in
ResourceManagerCreatorCAP
)
get()
(in
HydrophobicitySimilarityCAP
)
get_additional_output()
(in
FindConsensusSequence
)
get()
(in
ResourceManagerFactoryAP
)
get()
(in
InterbondAngleScoreAP
)
get_additional_output()
(in
ForceDisulfidesMover
)
get()
(in
ResourceManagerFactoryCAP
)
get()
(in
InterbondAngleScoreCAP
)
get_additional_output()
(in
GenericMonteCarloMover
)
get()
(in
ResourceOptionsAP
)
get()
(in
JCouplingAP
)
get_additional_output()
(in
GreenPacker
)
get()
(in
ResourceOptionsCAP
)
get()
(in
JCouplingCAP
)
get_additional_output()
(in
LoadPDBMover
)
get()
(in
ResourceOptionsCreatorAP
)
get()
(in
LAMBEGO_SimilarityAP
)
get_additional_output()
(in
LoadUnboundRotMover
)
get()
(in
ResourceOptionsCreatorCAP
)
get()
(in
LAMBEGO_SimilarityCAP
)
get_additional_output()
(in
MSDMover
)
get()
(in
ResourceOptionsFactoryAP
)
get()
(in
MakeABEGO_SS_ScoreAP
)
get_additional_output()
(in
MakePolyXMover
)
get()
(in
ResourceOptionsFactoryCAP
)
get()
(in
MakeABEGO_SS_ScoreCAP
)
get_additional_output()
(in
MembraneTopology
)
get()
(in
ResourceStreamAP
)
get()
(in
MakeAmbigCSScoreAP
)
get_additional_output()
(in
MinMover
)
get()
(in
ResourceStreamCAP
)
get()
(in
MakeAmbigCSScoreCAP
)
get_additional_output()
(in
MinPackMover
)
get()
(in
SingletonBase_T_basic_resource_manager_FallbackConfigurationFactory_TAP
)
get()
(in
MakeAtomPairConstraintsScoreAP
)
get_additional_output()
(in
MissingDensityToJumpMover
)
get()
(in
SingletonBase_T_basic_resource_manager_FallbackConfigurationFactory_TCAP
)
get()
(in
MakeAtomPairConstraintsScoreCAP
)
get_additional_output()
(in
ModifyVariantTypeMover
)
get()
(in
SingletonBase_T_basic_resource_manager_ResourceLoaderFactory_TAP
)
get()
(in
MakeBFactorAP
)
get_additional_output()
(in
MonteCarloRecover
)
get()
(in
SingletonBase_T_basic_resource_manager_ResourceLoaderFactory_TCAP
)
get()
(in
MakeBFactorCAP
)
get_additional_output()
(in
MonteCarloReset
)
get()
(in
SingletonBase_T_basic_resource_manager_ResourceLocatorFactory_TAP
)
get()
(in
MakeCSScoreAP
)
get_additional_output()
(in
MonteCarloTest
)
get()
(in
SingletonBase_T_basic_resource_manager_ResourceLocatorFactory_TCAP
)
get()
(in
MakeCSScoreCAP
)
get_additional_output()
(in
MutateResidue
)
get()
(in
SingletonBase_T_basic_resource_manager_ResourceManagerFactory_TAP
)
get()
(in
MakeConstScoreAP
)
get_additional_output()
(in
O2M_MutateMover
)
get()
(in
SingletonBase_T_basic_resource_manager_ResourceManagerFactory_TCAP
)
get()
(in
MakeConstScoreCAP
)
get_additional_output()
(in
PDBReloadMover
)
get()
(in
SingletonBase_T_basic_resource_manager_ResourceManager_TAP
)
get()
(in
MakeDihedralConstraintsScoreAP
)
get_additional_output()
(in
PSSM2BfactorMover
)
get()
(in
SingletonBase_T_basic_resource_manager_ResourceManager_TCAP
)
get()
(in
MakeDihedralConstraintsScoreCAP
)
get_additional_output()
(in
PackRotamersMover
)
get()
(in
SingletonBase_T_basic_resource_manager_ResourceOptionsFactory_TAP
)
get()
(in
MakeDisulfideDistanceAP
)
get_additional_output()
(in
PackRotamersMoverLazy
)
get()
(in
SingletonBase_T_basic_resource_manager_ResourceOptionsFactory_TCAP
)
get()
(in
MakeDisulfideDistanceCAP
)
get_additional_output()
(in
PeptideStapleMover
)
get()
(in
NativeFallbackConfigurationAP
)
get()
(in
MakeDisulfideIdentityAP
)
get_additional_output()
(in
PeriodicBoxMover
)
get()
(in
NativeFallbackConfigurationCAP
)
get()
(in
MakeDisulfideIdentityCAP
)
get_additional_output()
(in
ProlineFixMover
)
get()
(in
NativeFallbackConfigurationCreatorAP
)
get()
(in
MakeFragmentAllAtomCrmsdAP
)
get_additional_output()
(in
RandomOmegaFlipMover
)
get()
(in
NativeFallbackConfigurationCreatorCAP
)
get()
(in
MakeFragmentAllAtomCrmsdCAP
)
get_additional_output()
(in
RandomTorsionMover
)
get()
(in
DatabaseResourceLocatorAP
)
get()
(in
MakeFragmentChunkCrmsAP
)
get_additional_output()
(in
RepackSidechainsMover
)
get()
(in
DatabaseResourceLocatorCAP
)
get()
(in
MakeFragmentChunkCrmsCAP
)
get_additional_output()
(in
RepeatPropagationMover
)
get()
(in
DatabaseResourceLocatorCreatorAP
)
get()
(in
MakeFragmentCrmsdAP
)
get_additional_output()
(in
ReportEffectivePKA
)
get()
(in
DatabaseResourceLocatorCreatorCAP
)
get()
(in
MakeFragmentCrmsdCAP
)
get_additional_output()
(in
RepulsiveOnlyMover
)
get()
(in
FileListResourceLocatorAP
)
get()
(in
MakeFragmentCrmsdResDepthAP
)
get_additional_output()
(in
ResetBaselineMover
)
get()
(in
FileListResourceLocatorCAP
)
get()
(in
MakeFragmentCrmsdResDepthCAP
)
get_additional_output()
(in
ResidueTypeConstraintMover
)
get()
(in
FileListResourceLocatorCreatorAP
)
get()
(in
MakeFragmentDMEAP
)
get_additional_output()
(in
ReturnSidechainMover
)
get()
(in
FileListResourceLocatorCreatorCAP
)
get()
(in
MakeFragmentDMECAP
)
get_additional_output()
(in
RingConformationMover
)
get()
(in
FileStreamAP
)
get()
(in
MakeFragmentScoringMethodAP
)
get_additional_output()
(in
RotamerTrialsMinMover
)
get()
(in
FileStreamCAP
)
get()
(in
MakeFragmentScoringMethodCAP
)
get_additional_output()
(in
RotamerTrialsMover
)
get()
(in
FileSystemResourceLocatorAP
)
get()
(in
MakeGunnCostScoreAP
)
get_additional_output()
(in
RotamerizeMover
)
get()
(in
FileSystemResourceLocatorCAP
)
get()
(in
MakeGunnCostScoreCAP
)
get_additional_output()
(in
SaneMinMover
)
get()
(in
FileSystemResourceLocatorCreatorAP
)
get()
(in
MakeHydrophobicityProfileSimilarityAP
)
get_additional_output()
(in
ScoreMover
)
get()
(in
FileSystemResourceLocatorCreatorCAP
)
get()
(in
MakeHydrophobicityProfileSimilarityCAP
)
get_additional_output()
(in
SequenceProfileMover
)
get()
(in
NullResourceLocatorAP
)
get()
(in
MakeHydrophobicitySimilarityAP
)
get_additional_output()
(in
SetReturningPackRotamersMover
)
get()
(in
NullResourceLocatorCAP
)
get()
(in
MakeHydrophobicitySimilarityCAP
)
get_additional_output()
(in
SetTorsion
)
get()
(in
NullResourceLocatorCreatorAP
)
get()
(in
MakeInterbondAngleScoreAP
)
get_additional_output()
(in
ShakeStructureMover
)
get()
(in
NullResourceLocatorCreatorCAP
)
get()
(in
MakeInterbondAngleScoreCAP
)
get_additional_output()
(in
ShearMover
)
get()
(in
NullStreamAP
)
get()
(in
MakeJCouplingAP
)
get_additional_output()
(in
ShortBackrubMover
)
get()
(in
NullStreamCAP
)
get()
(in
MakeJCouplingCAP
)
get_additional_output()
(in
SmallMover
)
get()
(in
StringResourceStreamAP
)
get()
(in
MakeLAMBEGO_SimilarityAP
)
get_additional_output()
(in
SuperimposeMover
)
get()
(in
StringResourceStreamCAP
)
get()
(in
MakeLAMBEGO_SimilarityCAP
)
get_additional_output()
(in
SwitchChainOrderMover
)
get()
(in
PermuteAP
)
get()
(in
MakeMidPhiOutAP
)
get_additional_output()
(in
SwitchResidueTypeSetMover
)
get()
(in
PermuteCAP
)
get()
(in
MakeMidPhiOutCAP
)
get_additional_output()
(in
TailsScoreMover
)
get()
(in
QuatDBMetadataAP
)
get()
(in
MakeMidPsiOutAP
)
get_additional_output()
(in
TaskAwareMinMover
)
get()
(in
QuatDBMetadataCAP
)
get()
(in
MakeMidPsiOutCAP
)
get_additional_output()
(in
TorsionDOFMover
)
get()
(in
QuatSetAP
)
get()
(in
MakePCS_FragDistanceAP
)
get_additional_output()
(in
TorsionSetMover
)
get()
(in
QuatSetCAP
)
get()
(in
MakePCS_FragDistanceCAP
)
get_additional_output()
(in
Tumble
)
get()
(in
QuaternionAP
)
get()
(in
MakePartialSecondarySimilarityAP
)
get_additional_output()
(in
UniformRotationMover
)
get()
(in
QuaternionCAP
)
get()
(in
MakePartialSecondarySimilarityCAP
)
get_additional_output()
(in
UniformTranslationMover
)
get()
(in
QuaternionGridAP
)
get()
(in
MakePhiAP
)
get_additional_output()
(in
VirtualRootMover
)
get()
(in
QuaternionGridCAP
)
get()
(in
MakePhiCAP
)
get_additional_output()
(in
ddG
)
get()
(in
QuaternionGridManagerAP
)
get()
(in
MakePhiPsiRmsdAP
)
get_additional_output()
(in
AsymFoldandDockMoveRbJumpMover
)
get()
(in
QuaternionGridManagerCAP
)
get()
(in
MakePhiPsiRmsdCAP
)
get_additional_output()
(in
AsymFoldandDockRbTrialMover
)
get()
(in
SingletonBase_T_basic_sampling_orientations_QuaternionGridManager_TAP
)
get()
(in
MakePhiPsiSquareWellAP
)
get_additional_output()
(in
InitializeByBins
)
get()
(in
SingletonBase_T_basic_sampling_orientations_QuaternionGridManager_TCAP
)
get()
(in
MakePhiPsiSquareWellCAP
)
get_additional_output()
(in
PerturbByBins
)
get()
(in
TripleAP
)
get()
(in
MakeProfileScoreAP
)
get_additional_output()
(in
ChiralMover
)
get()
(in
TripleCAP
)
get()
(in
MakeProfileScoreBlosum62AP
)
get_additional_output()
(in
HbsPatcher
)
get()
(in
SVD_SolverAP
)
get()
(in
MakeProfileScoreBlosum62CAP
)
get_additional_output()
(in
OopDPuckMinusMover
)
get()
(in
SVD_SolverCAP
)
get()
(in
MakeProfileScoreCAP
)
get_additional_output()
(in
OopDPuckPlusMover
)
get()
(in
APolarHydrogenFilterAP
)
get()
(in
MakeProfileScoreDistWeightAP
)
get_additional_output()
(in
OopMover
)
get()
(in
APolarHydrogenFilterCAP
)
get()
(in
MakeProfileScoreDistWeightCAP
)
get_additional_output()
(in
OopPatcher
)
get()
(in
AcceptorAtomFilterAP
)
get()
(in
MakeProfileScoreL1AP
)
get_additional_output()
(in
OopPuckMinusMover
)
get()
(in
AcceptorAtomFilterCAP
)
get()
(in
MakeProfileScoreL1CAP
)
get_additional_output()
(in
OopPuckPlusMover
)
get()
(in
AddAtomAP
)
get()
(in
MakeProfileScoreStructL1AP
)
get_additional_output()
(in
OopRandomPuckMover
)
get()
(in
AddAtomAliasAP
)
get()
(in
MakeProfileScoreStructL1CAP
)
get_additional_output()
(in
OopRandomSmallMover
)
get()
(in
AddAtomAliasCAP
)
get()
(in
MakeProfileScoreSubMatrixAP
)
get_additional_output()
(in
RationalMonteCarlo
)
get()
(in
AddAtomCAP
)
get()
(in
MakeProfileScoreSubMatrixCAP
)
get_additional_output()
(in
JumpRotamerSidechainMover
)
get()
(in
AddBondAP
)
get()
(in
MakeProlinePhiScoreAP
)
get_additional_output()
(in
PerturbChiSidechainMover
)
get()
(in
AddBondCAP
)
get()
(in
MakeProlinePhiScoreCAP
)
get_additional_output()
(in
PerturbRotamerSidechainMover
)
get()
(in
AddBondTypeAP
)
get()
(in
MakePsiAP
)
get_additional_output()
(in
SetChiMover
)
get()
(in
AddBondTypeCAP
)
get()
(in
MakePsiCAP
)
get_additional_output()
(in
SidechainMCMover
)
get()
(in
AddChiAP
)
get()
(in
MakeRDCScoreAP
)
get_additional_output()
(in
SidechainMover
)
get()
(in
AddChiCAP
)
get()
(in
MakeRDCScoreCAP
)
get_additional_output()
(in
SidechainMoverBase
)
get()
(in
AddChiRotamerAP
)
get()
(in
MakeRamaScoreAP
)
get_additional_output()
(in
DetectSymmetry
)
get()
(in
AddChiRotamerCAP
)
get()
(in
MakeRamaScoreCAP
)
get_additional_output()
(in
ExtractAsymmetricPoseMover
)
get()
(in
AddConnectAP
)
get()
(in
MakeScoreEValuatorAP
)
get_additional_output()
(in
ExtractAsymmetricUnitMover
)
get()
(in
AddConnectCAP
)
get()
(in
MakeScoreEValuatorCAP
)
get_additional_output()
(in
FaSymDockingSlideTogether
)
get()
(in
AddPropertyAP
)
get()
(in
MakeSecondaryIdentityAP
)
get_additional_output()
(in
SetupForSymmetryMover
)
get()
(in
AddPropertyCAP
)
get()
(in
MakeSecondaryIdentityCAP
)
get_additional_output()
(in
SetupNCSMover
)
get()
(in
AddProtonChiAP
)
get()
(in
MakeSecondarySimilarityAP
)
get_additional_output()
(in
SymDockingInitialPerturbation
)
get()
(in
AddProtonChiCAP
)
get()
(in
MakeSecondarySimilarityCAP
)
get_additional_output()
(in
SymDockingSlideIntoContact
)
get()
(in
AdductAP
)
get()
(in
MakeSequenceIdentityAP
)
get_additional_output()
(in
SymEnergyCutRotamerTrialsMover
)
get()
(in
AdductCAP
)
get()
(in
MakeSequenceIdentityCAP
)
get_additional_output()
(in
SymMinMover
)
get()
(in
AppendInterchangeabilityGroup_StringAP
)
get()
(in
MakeSolventAccessibilityAP
)
get_additional_output()
(in
SymPackRotamersMover
)
get()
(in
AppendInterchangeabilityGroup_StringCAP
)
get()
(in
MakeSolventAccessibilityCAP
)
get_additional_output()
(in
SymRotamerTrialsMover
)
get()
(in
AppendMainchainAtomAP
)
get()
(in
MakeTalosSSSimilarityAP
)
get_additional_output()
(in
SymShakeStructureMover
)
get()
(in
AppendMainchainAtomCAP
)
get()
(in
MakeTalosSSSimilarityCAP
)
get_additional_output()
(in
SymmetricRMSMover
)
get()
(in
AromaticAtomFilterAP
)
get()
(in
MakeTorsionBinSimilarityAP
)
get_additional_output()
(in
TaskAwareSymMinMover
)
get()
(in
AromaticAtomFilterCAP
)
get()
(in
MakeTorsionBinSimilarityCAP
)
get_additional_output()
(in
StepWiseProteinMinimizer
)
get()
(in
AtomAP
)
get()
(in
MidPhiOutAP
)
get_additional_output()
(in
StepWiseProteinPoseSetup
)
get()
(in
AtomCAP
)
get()
(in
MidPhiOutCAP
)
get_additional_output()
(in
StepWiseRNA_PoseSetup
)
get()
(in
AtomICoorAP
)
get()
(in
MidPsiOutAP
)
get_additional_output()
(in
StepWiseConnectionSampler
)
get()
(in
AtomICoorCAP
)
get()
(in
MidPsiOutCAP
)
get_additional_output()
(in
StepWiseMinimizer
)
get()
(in
AtomTypeAP
)
get()
(in
PCS_FragDistanceAP
)
get_additional_output()
(in
StepWiseModeler
)
get()
(in
AtomTypeCAP
)
get()
(in
PCS_FragDistanceCAP
)
get_additional_output()
(in
SideChainCopier
)
get()
(in
AtomTypeDatabaseIOAP
)
get()
(in
PValuedFragmentScoreManagerAP
)
get_additional_output()
(in
StepWisePacker
)
get()
(in
AtomTypeDatabaseIOCAP
)
get()
(in
PValuedFragmentScoreManagerCAP
)
get_additional_output()
(in
PolarHydrogenPacker
)
get()
(in
AtomTypeSetAP
)
get()
(in
PartialSecondarySimilarityAP
)
get_additional_output()
(in
PrecomputedLibraryMover
)
get()
(in
AtomTypeSetCAP
)
get()
(in
PartialSecondarySimilarityCAP
)
get_additional_output()
(in
StepWiseProteinBackboneSampler
)
get()
(in
AutomorphismIteratorAP
)
get()
(in
PhiAP
)
get_additional_output()
(in
StepWiseProteinCCD_Closer
)
get()
(in
AutomorphismIteratorCAP
)
get()
(in
PhiCAP
)
get_additional_output()
(in
StepWiseProteinCCD_MultiPoseCloser
)
get()
(in
BondAP
)
get()
(in
PhiPsiRmsdAP
)
get_additional_output()
(in
StepWiseProteinKIC_LoopBridger
)
get()
(in
BondCAP
)
get()
(in
PhiPsiRmsdCAP
)
get_additional_output()
(in
BulgeApplyMover
)
get()
(in
ChemicalManagerAP
)
get()
(in
PhiPsiSquareWellAP
)
get_additional_output()
(in
BulgeUnApplyMover
)
get()
(in
ChemicalManagerCAP
)
get()
(in
PhiPsiSquareWellCAP
)
get_additional_output()
(in
RNA_ChainClosureChecker
)
get()
(in
DeleteAtomAP
)
get()
(in
ProfileScoreAP
)
get_additional_output()
(in
RNA_HelixAssembler
)
get()
(in
DeleteAtomCAP
)
get()
(in
ProfileScoreBlosum62AP
)
get_additional_output()
(in
O2PrimePacker
)
get()
(in
DeleteMetalbindingAtomAP
)
get()
(in
ProfileScoreBlosum62CAP
)
get_additional_output()
(in
MultiPhosphateSampler
)
get()
(in
DeleteMetalbindingAtomCAP
)
get()
(in
ProfileScoreCAP
)
get_additional_output()
(in
PhosphateMover
)
get()
(in
DeletePropertyAP
)
get()
(in
ProfileScoreDistWeightAP
)
get_additional_output()
(in
SugarInstantiateMover
)
get()
(in
DeletePropertyCAP
)
get()
(in
ProfileScoreDistWeightCAP
)
get_additional_output()
(in
SugarVirtualizeMover
)
get()
(in
DeleteTerminalChiAP
)
get()
(in
ProfileScoreL1AP
)
get_additional_output()
(in
VirtualSugarJustInTimeInstantiator
)
get()
(in
DeleteTerminalChiCAP
)
get()
(in
ProfileScoreL1CAP
)
get_additional_output()
(in
VirtualSugarSampler
)
get()
(in
ElectronConfigurationAP
)
get()
(in
ProfileScoreStructL1AP
)
get_additional_output()
(in
VirtualSugarSamplerFromStringList
)
get()
(in
ElectronConfigurationCAP
)
get()
(in
ProfileScoreStructL1CAP
)
get_additional_output()
(in
StepWiseMonteCarlo
)
get()
(in
ElementAP
)
get()
(in
ProfileScoreSubMatrixAP
)
get_additional_output()
(in
AddMover
)
get()
(in
ElementCAP
)
get()
(in
ProfileScoreSubMatrixCAP
)
get_additional_output()
(in
AddOrDeleteMover
)
get()
(in
ElementSetAP
)
get()
(in
ProlinePhiScoreAP
)
get_additional_output()
(in
DeleteMover
)
get()
(in
ElementSetCAP
)
get()
(in
ProlinePhiScoreCAP
)
get_additional_output()
(in
FromScratchMover
)
get()
(in
HeavyAtomFilterAP
)
get()
(in
PsiAP
)
get_additional_output()
(in
ResampleMover
)
get()
(in
HeavyAtomFilterCAP
)
get()
(in
PsiCAP
)
get_additional_output()
(in
StepWiseMasterMover
)
get()
(in
HeavyAtomWithHydrogensFilterAP
)
get()
(in
RDCScoreAP
)
get_additional_output()
(in
RNA_AddDeleteMonteCarlo
)
get()
(in
HeavyAtomWithHydrogensFilterCAP
)
get()
(in
RDCScoreCAP
)
get_additional_output()
(in
RNA_O2PrimeMover
)
get()
(in
HeavyAtomWithPolarHydrogensFilterAP
)
get()
(in
RamaScoreAP
)
get_additional_output()
(in
RNA_TorsionMover
)
get()
(in
HeavyAtomWithPolarHydrogensFilterCAP
)
get()
(in
RamaScoreCAP
)
get_additional_output()
(in
JumpStepWiseSampler
)
get()
(in
HydrogenAtomFilterAP
)
get()
(in
ScoreEValuatorAP
)
get_additional_output()
(in
MC_Comb
)
get()
(in
HydrogenAtomFilterCAP
)
get()
(in
ScoreEValuatorCAP
)
get_additional_output()
(in
MC_OneTorsion
)
get()
(in
ICoorAtomIDAP
)
get()
(in
SecondaryIdentityAP
)
get_additional_output()
(in
NoOpStepWiseSampler
)
get()
(in
ICoorAtomIDCAP
)
get()
(in
SecondaryIdentityCAP
)
get_additional_output()
(in
StepWiseSamplerAny
)
get()
(in
IdealBondLengthSetAP
)
get()
(in
SecondarySimilarityAP
)
get_additional_output()
(in
StepWiseSamplerComb
)
get()
(in
IdealBondLengthSetCAP
)
get()
(in
SecondarySimilarityCAP
)
get_additional_output()
(in
StepWiseSamplerOneTorsion
)
get()
(in
MMAtomTypeAP
)
get()
(in
SequenceIdentityAP
)
get_additional_output()
(in
StepWiseSamplerOneValue
)
get()
(in
MMAtomTypeCAP
)
get()
(in
SequenceIdentityCAP
)
get_additional_output()
(in
StepWiseSamplerOneValueComb
)
get()
(in
MMAtomTypeSetAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_additional_output()
(in
StepWiseSamplerSized
)
get()
(in
MMAtomTypeSetCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_additional_output()
(in
StepWiseSamplerSizedAny
)
get()
(in
NCAARotLibPathAP
)
get()
(in
SolventAccessibilityAP
)
get_additional_output()
(in
StepWiseSamplerSizedComb
)
get()
(in
NCAARotLibPathCAP
)
get()
(in
SolventAccessibilityCAP
)
get_additional_output()
(in
CopyDofStepWiseSampler
)
get()
(in
OrbitalAP
)
get()
(in
TalosSSSimilarityAP
)
get_additional_output()
(in
ResidueAlternativeStepWiseSampler
)
get()
(in
OrbitalCAP
)
get()
(in
TalosSSSimilarityCAP
)
get_additional_output()
(in
ResidueAlternativeStepWiseSamplerComb
)
get()
(in
PatchAP
)
get()
(in
TorsionBinSimilarityAP
)
get_additional_output()
(in
ResidueListStepWiseSampler
)
get()
(in
PatchCAP
)
get()
(in
TorsionBinSimilarityCAP
)
get_additional_output()
(in
InputStreamStepWiseSampler
)
get()
(in
PatchCaseAP
)
get()
(in
FragLibAP
)
get_additional_output()
(in
ProteinBetaAntiParallelStepWiseSampler
)
get()
(in
PatchCaseCAP
)
get()
(in
FragLibCAP
)
get_additional_output()
(in
ProteinFragmentStepWiseSampler
)
get()
(in
PatchOperationAP
)
get()
(in
RMSVallDataAP
)
get_additional_output()
(in
ProteinMainChainStepWiseSampler
)
get()
(in
PatchOperationCAP
)
get()
(in
RMSVallDataCAP
)
get_additional_output()
(in
RigidBodyStepWiseSampler
)
get()
(in
PolarHydrogenFilterAP
)
get()
(in
SingleResidueTorsionFragmentLibraryAP
)
get_additional_output()
(in
RigidBodyStepWiseSamplerWithResidueAlternatives
)
get()
(in
PolarHydrogenFilterCAP
)
get()
(in
SingleResidueTorsionFragmentLibraryCAP
)
get_additional_output()
(in
RigidBodyStepWiseSamplerWithResidueList
)
get()
(in
PrependMainchainAtomAP
)
get()
(in
TorsionFragmentAP
)
get_additional_output()
(in
RNA_ChiStepWiseSampler
)
get()
(in
PrependMainchainAtomCAP
)
get()
(in
TorsionFragmentCAP
)
get_additional_output()
(in
RNA_KIC_Sampler
)
get()
(in
RealFilterAP
)
get()
(in
TorsionFragmentLibraryAP
)
get_additional_output()
(in
RNA_KinematicCloser
)
get()
(in
RealFilterCAP
)
get()
(in
TorsionFragmentLibraryCAP
)
get_additional_output()
(in
RNA_MC_MultiSuite
)
get()
(in
RedefineChiAP
)
get()
(in
TorsionFragmentMoverAP
)
get_additional_output()
(in
RNA_MC_Sugar
)
get()
(in
RedefineChiCAP
)
get()
(in
TorsionFragmentMoverCAP
)
get_additional_output()
(in
RNA_MC_Suite
)
get()
(in
ResConnIDAP
)
get()
(in
VallDataAP
)
get_additional_output()
(in
RNA_NucleosideStepWiseSampler
)
get()
(in
ResConnIDCAP
)
get()
(in
VallDataCAP
)
get_additional_output()
(in
RNA_SugarStepWiseSampler
)
get()
(in
ResidueConnectionAP
)
get()
(in
GeneralizedKICAP
)
get_additional_output()
(in
RNA_SuiteStepWiseSampler
)
get()
(in
ResidueConnectionCAP
)
get()
(in
GeneralizedKICCAP
)
get_additional_output()
(in
StepWiseCSA_JobDistributor
)
get()
(in
ResidueDatabaseIOAP
)
get()
(in
GeneralizedKICCreatorAP
)
get_additional_output()
(in
StepWiseJobDistributor
)
get()
(in
ResidueDatabaseIOCAP
)
get()
(in
GeneralizedKICCreatorCAP
)
get_additional_output()
(in
StepWiseMonteCarloJobDistributor
)
get()
(in
ResidueLoaderAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_additional_output()
(in
CentroidRelaxMover
)
get()
(in
ResidueLoaderCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_additional_output()
(in
FullatomRelaxMover
)
get()
(in
ResidueLoaderCreatorAP
)
get()
(in
GeneralizedKICfilterAP
)
get_additional_output()
(in
SurfaceDockingProtocol
)
get()
(in
ResidueLoaderCreatorCAP
)
get()
(in
GeneralizedKICfilterCAP
)
get_additional_output()
(in
SurfaceOrientMover
)
get()
(in
ResidueLoaderOptionsAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_additional_output()
(in
SymDockBaseProtocol
)
get()
(in
ResidueLoaderOptionsCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_additional_output()
(in
SymDockProtocol
)
get()
(in
ResidueLoaderOptionsCreatorAP
)
get()
(in
GeneralizedKICperturberAP
)
get_additional_output()
(in
SymDockingHiRes
)
get()
(in
ResidueLoaderOptionsCreatorCAP
)
get()
(in
GeneralizedKICperturberCAP
)
get_additional_output()
(in
SymDockingLowRes
)
get()
(in
ResiduePropertiesAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_additional_output()
(in
SymFoldandDockMoveRbJumpMover
)
get()
(in
ResiduePropertiesCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_additional_output()
(in
SymFoldandDockRbTrialMover
)
get()
(in
ResidueSelectorAP
)
get()
(in
GeneralizedKICselectorAP
)
get_additional_output()
(in
SymFoldandDockSlideTrialMover
)
get()
(in
ResidueSelectorCAP
)
get()
(in
GeneralizedKICselectorCAP
)
get_additional_output()
(in
SymInterfaceSidechainMinMover
)
get()
(in
ResidueSelectorSingleAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_additional_output()
(in
SymSidechainMinMover
)
get()
(in
ResidueSelectorSingleCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_additional_output()
(in
MPSymDockMover
)
get()
(in
ResidueTypeAP
)
get()
(in
DiscreteRandomizerAP
)
get_additional_output()
(in
AlignPoseToInvrotTreeMover
)
get()
(in
ResidueTypeCAP
)
get()
(in
DiscreteRandomizerCAP
)
get_additional_output()
(in
StoreCombinedStoredTasksMover
)
get()
(in
ResidueTypeKinWriterAP
)
get()
(in
EntityAP
)
get_additional_output()
(in
StoreCompoundTaskMover
)
get()
(in
ResidueTypeKinWriterCAP
)
get()
(in
EntityCAP
)
get_additional_output()
(in
StoreTaskMover
)
get()
(in
ResidueTypeSetAP
)
get()
(in
EntityElementAP
)
get_additional_output()
(in
UnfoldedStateEnergyCalculatorMover
)
get()
(in
ResidueTypeSetCAP
)
get()
(in
EntityElementCAP
)
get_additional_output_false_mover()
(in
IfMover
)
get()
(in
RingConformerAP
)
get()
(in
EntityElementCreatorAP
)
get_additional_output_true_mover()
(in
IfMover
)
get()
(in
RingConformerCAP
)
get()
(in
EntityElementCreatorCAP
)
get_additional_task_operarations()
(in
DockTaskFactory
)
get()
(in
RingConformerManagerAP
)
get()
(in
EntityElementFactoryAP
)
get_additional_task_operarations()
(in
DockingHighRes
)
get()
(in
RingConformerManagerCAP
)
get()
(in
EntityElementFactoryCAP
)
get_additional_task_operarations()
(in
DockingProtocol
)
get()
(in
RingConformerSetAP
)
get()
(in
EntityElementsEqualAP
)
get_addresses_at_level()
(in
HierarchicalLevel
)
get()
(in
RingConformerSetCAP
)
get()
(in
EntityElementsEqualCAP
)
get_adjacent_node()
(in
NodeBase
)
get()
(in
Selector_AAAP
)
get()
(in
EntityRandomizerAP
)
get_adjacent_otf_node()
(in
SymmOnTheFlyNode
)
get()
(in
Selector_AACAP
)
get()
(in
EntityRandomizerCAP
)
get_adjacent_symmin_node()
(in
SymmMinimalistNode
)
get()
(in
Selector_CMDFLAGAP
)
get()
(in
FitnessFunctionAP
)
get_adjacent_symmlinmem_node()
(in
SymmLinearMemNode
)
get()
(in
Selector_CMDFLAGCAP
)
get()
(in
FitnessFunctionCAP
)
get_ads_secondary_struct()
(in
FullatomRelaxMover
)
get()
(in
Selector_MATCH_VARIANTSAP
)
get()
(in
GeneticAlgorithmAP
)
get_AHDangle()
(in
HBond
)
get()
(in
Selector_MATCH_VARIANTSCAP
)
get()
(in
GeneticAlgorithmBaseAP
)
get_akash_dyepos()
(in
AnchorMoversData
)
get()
(in
Selector_NAME1AP
)
get()
(in
GeneticAlgorithmBaseCAP
)
get_al_tensor_max_z()
(in
ResidualDipolarCoupling
)
get()
(in
Selector_NAME1CAP
)
get()
(in
GeneticAlgorithmCAP
)
get_al_tensor_trace()
(in
ResidualDipolarCoupling
)
get()
(in
Selector_NAME3AP
)
get()
(in
Mutate1RandomizerAP
)
get_align_depth()
(in
FragmentLibrary
)
get()
(in
Selector_NAME3CAP
)
get()
(in
Mutate1RandomizerCAP
)
get_aligner()
(in
AlignerFactory
)
get()
(in
Selector_NO_VARIANTSAP
)
get()
(in
PositionSpecificRandomizerAP
)
get_alignment()
(in
AlignEvaluator
)
get()
(in
Selector_NO_VARIANTSCAP
)
get()
(in
PositionSpecificRandomizerCAP
)
get_alignment_from_template()
(in
ChunkTrialMover
)
get()
(in
Selector_PROPERTYAP
)
get()
(in
SingletonBase_T_protocols_genetic_algorithm_EntityElementFactory_TAP
)
get_all()
(in
LoopHashLibrary
)
get()
(in
Selector_PROPERTYCAP
)
get()
(in
SingletonBase_T_protocols_genetic_algorithm_EntityElementFactory_TCAP
)
get_all_atom_types_in_database()
(in
AtomTypeDatabaseIO
)
get()
(in
Selector_UPPER_POSITIONAP
)
get()
(in
Vec1HashAP
)
get_all_born_radii()
(in
GenBornPotential
)
get()
(in
Selector_UPPER_POSITIONCAP
)
get()
(in
Vec1HashCAP
)
get_all_channels_string()
(in
Tracer
)
get()
(in
Selector_VARIANT_TYPEAP
)
get()
(in
AnchoredGraftMoverAP
)
get_all_comments()
(in
SilentStruct
)
get()
(in
Selector_VARIANT_TYPECAP
)
get()
(in
AnchoredGraftMoverCAP
)
get_all_comments()
(in
rosetta.core.pose._core_pose_
)
get()
(in
SetAtomTypeAP
)
get()
(in
AnchoredGraftMoverCreatorAP
)
get_all_constraints()
(in
ConstraintSet
)
get()
(in
SetAtomTypeCAP
)
get()
(in
AnchoredGraftMoverCreatorCAP
)
get_all_data()
(in
InterfaceAnalyzerMover
)
get()
(in
SetAtomicChargeAP
)
get()
(in
CCDEndsGraftMoverAP
)
get_all_derivs()
(in
PolycubicSpline
)
get()
(in
SetAtomicChargeCAP
)
get()
(in
CCDEndsGraftMoverCAP
)
get_all_disulfides()
(in
DisulfideMatchingDatabase
)
get()
(in
SetBackboneHeavyatomAP
)
get()
(in
CCDEndsGraftMoverCreatorAP
)
get_all_exemplars()
(in
APCluster
)
get()
(in
SetBackboneHeavyatomCAP
)
get()
(in
CCDEndsGraftMoverCreatorCAP
)
get_all_features_names()
(in
FeaturesReporterFactory
)
get()
(in
SetFormalChargeAP
)
get()
(in
GraftMoverBaseAP
)
get_all_function_names()
(in
RDFFunctionFactory
)
get()
(in
SetFormalChargeCAP
)
get()
(in
GraftMoverBaseCAP
)
get_all_graft_permutations()
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
get()
(in
SetICoorAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_all_loops_closed()
(in
IndependentLoopMover
)
get()
(in
SetICoorCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_all_loops_definer_names()
(in
LoopsDefinerFactory
)
get()
(in
SetIO_StringAP
)
get()
(in
DeleteRegionMoverAP
)
get_all_nondegenerate_conformers()
(in
RingConformerSet
)
get()
(in
SetIO_StringCAP
)
get()
(in
DeleteRegionMoverCAP
)
get_all_per_residue_data()
(in
InterfaceAnalyzerMover
)
get()
(in
SetInterchangeabilityGroup_StringAP
)
get()
(in
DeleteRegionMoverCreatorAP
)
get_all_poses()
(in
ExtendedPoseInputStream
)
get()
(in
SetInterchangeabilityGroup_StringCAP
)
get()
(in
DeleteRegionMoverCreatorCAP
)
get_all_poses()
(in
LazySilentFilePoseInputStream
)
get()
(in
SetMMAtomTypeAP
)
get()
(in
InsertPoseIntoPoseMoverAP
)
get_all_poses()
(in
MetaPoseInputStream
)
get()
(in
SetMMAtomTypeCAP
)
get()
(in
InsertPoseIntoPoseMoverCAP
)
get_all_poses()
(in
PDBPoseInputStream
)
get()
(in
SetNbrAtomAP
)
get()
(in
InsertPoseIntoPoseMoverCreatorAP
)
get_all_poses()
(in
PoseInputStream
)
get()
(in
SetNbrAtomCAP
)
get()
(in
InsertPoseIntoPoseMoverCreatorCAP
)
get_all_poses()
(in
SilentFilePoseInputStream
)
get()
(in
SetNbrRadiusAP
)
get()
(in
KeepRegionMoverAP
)
get_all_properties()
(in
AtomType
)
get()
(in
SetNbrRadiusCAP
)
get()
(in
KeepRegionMoverCAP
)
get_all_register_and_bulges()
(in
StrandPairing
)
get()
(in
SetOrientAtomAP
)
get()
(in
KeepRegionMoverCreatorAP
)
get_all_res_list()
(in
rosetta.protocols.stepwise.monte_carlo._protocols_stepwise_monte_carlo_
)
get()
(in
SetOrientAtomCAP
)
get()
(in
KeepRegionMoverCreatorCAP
)
get_all_residues()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
get()
(in
SetPolymerConnectAtomAP
)
get()
(in
ReplaceRegionMoverAP
)
get_all_residues_in_database()
(in
ResidueDatabaseIO
)
get()
(in
SetPolymerConnectAtomCAP
)
get()
(in
ReplaceRegionMoverCAP
)
get_all_residues_in_this_sheet()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
ReplaceRegionMoverCreatorAP
)
get_all_rotamer_samples()
(in
SingleResidueDunbrackLibrary
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
ReplaceRegionMoverCreatorCAP
)
get_all_rotamer_samples()
(in
SingleResiduePeptoidLibrary
)
get()
(in
SingletonBase_T_core_chemical_RingConformerManager_TAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_all_score_line_strings()
(in
rosetta.core.pose._core_pose_
)
get()
(in
SingletonBase_T_core_chemical_RingConformerManager_TCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_all_solutions()
(in
CoarseRNA_LoopCloser
)
get()
(in
CarbohydrateInfoAP
)
get()
(in
BackboneGridSamplerAP
)
get_all_states()
(in
FlexbbNode
)
get()
(in
CarbohydrateInfoCAP
)
get()
(in
BackboneGridSamplerCAP
)
get_all_strands_in_sheet_i()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
GasteigerAtomTypeDataAP
)
get()
(in
BackboneGridSamplerCreatorAP
)
get_all_working_moving_res()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
get()
(in
GasteigerAtomTypeDataCAP
)
get()
(in
BackboneGridSamplerCreatorCAP
)
get_AllCDRs_in_loopsop()
(in
AntibodyInfo
)
get()
(in
GasteigerAtomTypeSetAP
)
get()
(in
BackboneGridSamplerHelperAP
)
get_allow_anchor_repack()
(in
AnchorMoversData
)
get()
(in
GasteigerAtomTypeSetCAP
)
get()
(in
BackboneGridSamplerHelperCAP
)
get_allow_independent_alignment_per_fragment_mode()
(in
MotifMatch
)
get()
(in
PossibleAtomTypesForAtomAP
)
get()
(in
BundleGridSamplerAP
)
get_allow_insert()
(in
ConstrainToIdealMover
)
get()
(in
PossibleAtomTypesForAtomCAP
)
get()
(in
BundleGridSamplerCAP
)
get_allow_slide_jump_map()
(in
SymmetrySlider
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
BundleGridSamplerCreatorAP
)
get_aln()
(in
AlignmentCluster
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
BundleGridSamplerCreatorCAP
)
get_alpha()
(in
RNA_ChemicalShiftPotential
)
get()
(in
AssignOrbitalsAP
)
get()
(in
BundleGridSamplerHelperAP
)
get_alt_score_()
(in
SOGFunc_Impl
)
get()
(in
AssignOrbitalsCAP
)
get()
(in
BundleGridSamplerHelperCAP
)
get_alt_stateE()
(in
MinimalistFlexbbEdge
)
get()
(in
ICoorOrbitalDataAP
)
get()
(in
FitSimpleHelixAP
)
get_alternate()
(in
SimpleNode
)
get()
(in
ICoorOrbitalDataCAP
)
get()
(in
FitSimpleHelixCAP
)
get_alternate_state_energy()
(in
DensePDEdge
)
get()
(in
OrbitalTypeAP
)
get()
(in
FitSimpleHelixCreatorAP
)
get_alternate_state_energy()
(in
DoubleDensePDEdge
)
get()
(in
OrbitalTypeCAP
)
get()
(in
FitSimpleHelixCreatorCAP
)
get_alternate_state_energy()
(in
FASTEREdge
)
get()
(in
OrbitalTypeMapperAP
)
get()
(in
FitSimpleHelixMultiFuncAP
)
get_alternate_state_energy_first_node()
(in
LazyEdge
)
get()
(in
OrbitalTypeMapperCAP
)
get()
(in
FitSimpleHelixMultiFuncCAP
)
get_alternate_state_energy_first_node()
(in
PDEdge
)
get()
(in
OrbitalTypeSetAP
)
get()
(in
MakeBundleAP
)
get_alternate_state_energy_second_node()
(in
LazyEdge
)
get()
(in
OrbitalTypeSetCAP
)
get()
(in
MakeBundleCAP
)
get_alternate_state_energy_second_node()
(in
PDEdge
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
MakeBundleCreatorAP
)
get_anchor_and_root_atoms()
(in
rosetta.core.conformation._core_conformation_
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
MakeBundleCreatorCAP
)
get_anchor_atomno()
(in
rosetta.core.conformation._core_conformation_
)
get()
(in
GaussianParameterAP
)
get()
(in
MakeBundleHelixAP
)
get_anchor_noise_constraints_mode()
(in
AnchorMoversData
)
get()
(in
GaussianParameterCAP
)
get()
(in
MakeBundleHelixCAP
)
get_anchor_res()
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
get()
(in
RNA_FittedTorsionInfoAP
)
get()
(in
MakeBundleHelixCreatorAP
)
get_anchor_residue()
(in
SymmData
)
get()
(in
RNA_FittedTorsionInfoCAP
)
get()
(in
MakeBundleHelixCreatorCAP
)
get_anchor_via_constraints()
(in
AnchorMoversData
)
get()
(in
RNA_ResidueTypeAP
)
get()
(in
PerturbBundleAP
)
get_anchors()
(in
HybridizeFoldtreeDynamic
)
get()
(in
RNA_ResidueTypeCAP
)
get()
(in
PerturbBundleCAP
)
get_angle_diffs()
(in
SymDofMoverSampler
)
get()
(in
BondDataAP
)
get()
(in
PerturbBundleCreatorAP
)
get_angle_max()
(in
BackboneMover
)
get()
(in
BondDataCAP
)
get()
(in
PerturbBundleCreatorCAP
)
get_angle_range()
(in
TorsionDOFMover
)
get()
(in
CtabParserBaseAP
)
get()
(in
PerturbBundleHelixAP
)
get_angles()
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
CtabParserBaseCAP
)
get()
(in
PerturbBundleHelixCAP
)
get_angles()
(in
LeGrandSasa
)
get()
(in
CtabV2000ParserAP
)
get()
(in
PerturbBundleHelixCreatorAP
)
get_angles()
(in
SymDofMoverSampler
)
get()
(in
CtabV2000ParserCAP
)
get()
(in
PerturbBundleHelixCreatorCAP
)
get_angular_momentum_quantum_number()
(in
ElectronConfiguration
)
get()
(in
CtabV3000ParserAP
)
get()
(in
PerturbBundleOptionsAP
)
get_antibody_chain_ids()
(in
AntibodyInfo
)
get()
(in
CtabV3000ParserCAP
)
get()
(in
PerturbBundleOptionsCAP
)
get_antibody_chain_string()
(in
AntibodyInfo
)
get()
(in
MolFileIOAtomAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_antibody_chains()
(in
AntibodyInfo
)
get()
(in
MolFileIOAtomCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_antibody_enum_manager()
(in
AntibodyInfo
)
get()
(in
MolFileIOBondAP
)
get()
(in
BundleParametersAP
)
get_antibody_numbering()
(in
AntibodyNumberingParser
)
get()
(in
MolFileIOBondCAP
)
get()
(in
BundleParametersCAP
)
get_antibody_sequence()
(in
AntibodyInfo
)
get()
(in
MolFileIOMoleculeAP
)
get()
(in
BundleParametersSetAP
)
get_AntibodyFrameworkInfo()
(in
AntibodyInfo
)
get()
(in
MolFileIOMoleculeCAP
)
get()
(in
BundleParametersSetCAP
)
get_antigen_chain_ids()
(in
AntibodyInfo
)
get()
(in
MolFileIOReaderAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_antigen_chain_string()
(in
AntibodyInfo
)
get()
(in
MolFileIOReaderCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_antigen_chains()
(in
AntibodyInfo
)
get()
(in
MolWriterAP
)
get()
(in
HelixNCapperMoverAP
)
get_antiparallel_weight()
(in
SecondaryStructureWeights
)
get()
(in
MolWriterCAP
)
get()
(in
HelixNCapperMoverCAP
)
get_aro_residues_in_this_sheet()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
SDFParserAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_asymm_unit_fold_tree()
(in
rosetta.core.conformation.symmetry._core_conformation_symmetry_
)
get()
(in
SDFParserCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_asymmetric_pose_copy_from_symmetric_pose()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
AddSearchPatternRotSetOpAP
)
get_asymmetric_seqpos()
(in
SymmetryInfo
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
AddSearchPatternRotSetOpCAP
)
get_atom()
(in
CartesianMinimizerMap
)
get()
(in
AbstractRotamerTrieAP
)
get()
(in
CartesianSearchPatternAP
)
get_atom_atom_carbon_hbond_energy()
(in
CarbonHBondEnergy
)
get()
(in
AbstractRotamerTrieCAP
)
get()
(in
CartesianSearchPatternCAP
)
get_atom_atom_coverage()
(in
RotamerDots
)
get()
(in
AtomAP
)
get()
(in
ComposeSearchPatternsAP
)
get_atom_atom_geometric_solvation_for_acceptor()
(in
GeometricSolEnergyEvaluator
)
get()
(in
AtomCAP
)
get()
(in
ComposeSearchPatternsCAP
)
get_atom_atom_geometric_solvation_for_donor()
(in
GeometricSolEnergyEvaluator
)
get()
(in
AtomGraphEdgeDataAP
)
get()
(in
ConstPatternAP
)
get_atom_coordinates()
(in
AtomBasedConstraintsScore
)
get()
(in
AtomGraphEdgeDataCAP
)
get()
(in
ConstPatternCAP
)
get_atom_coordinates()
(in
rosetta.protocols.toolbox.rigid_body._protocols_toolbox_rigid_body_
)
get()
(in
AtomGraphVertexDataAP
)
get()
(in
HotspotStubAP
)
get_atom_coords_xyz()
(in
RotamerDots
)
get()
(in
AtomGraphVertexDataCAP
)
get()
(in
HotspotStubCAP
)
get_atom_counts()
(in
RotamerDots
)
get()
(in
ConformationAP
)
get()
(in
HotspotStubSetAP
)
get_atom_counts()
(in
RotamerDotsCache
)
get()
(in
ConformationCAP
)
get()
(in
HotspotStubSetCAP
)
get_atom_dist_from_connolly_surface()
(in
ElectrostaticpotentialGrid
)
get()
(in
ConformationKinWriterAP
)
get()
(in
LSMSearchPatternAP
)
get_atom_h2o_hbond_derivative()
(in
WaterAdductHBondEnergy
)
get()
(in
ConformationKinWriterCAP
)
get()
(in
LSMSearchPatternCAP
)
get_atom_id_map()
(in
ChunkSet
)
get()
(in
DefaultCubeHashAP
)
get()
(in
PartitionedSearchPatternAP
)
get_atom_index()
(in
CartesianMinimizerMap
)
get()
(in
DefaultCubeHashCAP
)
get()
(in
PartitionedSearchPatternCAP
)
get_atom_index()
(in
FormFactorManager
)
get()
(in
ExactResidueMatcherAP
)
get()
(in
RotationSearchPatternAP
)
get_atom_name()
(in
PcsInputLine
)
get()
(in
ExactResidueMatcherCAP
)
get()
(in
RotationSearchPatternCAP
)
get_atom_radius()
(in
RotamerDots
)
get()
(in
PointGraphEdgeDataAP
)
get()
(in
SICPatternAtTransformAP
)
get_atom_sasa()
(in
RotamerDots
)
get()
(in
PointGraphEdgeDataCAP
)
get()
(in
SICPatternAtTransformCAP
)
get_atom_sasa()
(in
SasaCalc
)
get()
(in
PointGraphPyAP
)
get()
(in
SearchPatternAP
)
get_atom_type_property()
(in
GasteigerAtomTypeData
)
get()
(in
PointGraphPyCAP
)
get()
(in
SearchPatternCAP
)
get_atomic_number()
(in
Element
)
get()
(in
PointGraphVertexDataAP
)
get()
(in
SearchPatternExpansionAP
)
get_atomID()
(in
NormalMode
)
get()
(in
PointGraphVertexDataCAP
)
get()
(in
SearchPatternExpansionCAP
)
get_atomname()
(in
RNA_CS_residue_parameters
)
get()
(in
PseudoBondAP
)
get()
(in
SearchPatternRotSetOpAP
)
get_atomnames_size()
(in
RNA_CS_residue_parameters
)
get()
(in
PseudoBondCAP
)
get()
(in
SearchPatternRotSetOpCAP
)
get_atoms_ala()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
PseudoBondCollectionAP
)
get()
(in
SearchPatternTransformAP
)
get_atoms_ala_downstream()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
PseudoBondCollectionCAP
)
get()
(in
SearchPatternTransformCAP
)
get_atoms_arg()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
ResidueAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_atoms_arg_downstream()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
ResidueCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_atoms_asn()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
ResidueFactoryAP
)
get()
(in
SphericalRotationSearchPatternAP
)
get_atoms_asn_downstream()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
ResidueFactoryCAP
)
get()
(in
SphericalRotationSearchPatternCAP
)
get_atoms_asp()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
ResidueKinWriterAP
)
get()
(in
StubGeneratorAP
)
get_atoms_asp_downstream()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
ResidueKinWriterCAP
)
get()
(in
StubGeneratorCAP
)
get_atoms_cys()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
ResidueMatcherAP
)
get()
(in
SurfaceSearchPatternAP
)
get_atoms_cys_downstream()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
ResidueMatcherCAP
)
get()
(in
SurfaceSearchPatternCAP
)
get_atoms_gln()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
RotamerSetBaseAP
)
get()
(in
TestPatternAP
)
get_atoms_gln_downstream()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
RotamerSetBaseCAP
)
get()
(in
TestPatternCAP
)
get_atoms_glu()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
VectorPairAP
)
get_atoms_glu_downstream()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
VectorPairCAP
)
get_atoms_gly()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
UltraLightResidueAP
)
get()
(in
PlaceProbeMoverAP
)
get_atoms_gly_downstream()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
UltraLightResidueCAP
)
get()
(in
PlaceProbeMoverCAP
)
get_atoms_his()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
UpperEdgeGraph_T_core_conformation_PointGraphVertexData_core_conformation_PointGraphEdgeData_TAP
)
get()
(in
PlaceSurfaceProbeAP
)
get_atoms_his_downstream()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
UpperEdgeGraph_T_core_conformation_PointGraphVertexData_core_conformation_PointGraphEdgeData_TCAP
)
get()
(in
PlaceSurfaceProbeCAP
)
get_atoms_ile()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
WatsonCrickResidueMatcherAP
)
get()
(in
PlaceSurfaceProbeCreatorAP
)
get_atoms_ile_downstream()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
WatsonCrickResidueMatcherCAP
)
get()
(in
PlaceSurfaceProbeCreatorCAP
)
get_atoms_leu()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
EXCN_Illegal_ArgumentsAP
)
get()
(in
AllResiduesChangedAP
)
get_atoms_leu_downstream()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
EXCN_Illegal_ArgumentsCAP
)
get()
(in
AllResiduesChangedCAP
)
get_atoms_lys()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
EXCN_MembraneAP
)
get()
(in
BackboneTorsionPerturbationAP
)
get_atoms_lys_downstream()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
EXCN_MembraneCAP
)
get()
(in
BackboneTorsionPerturbationCAP
)
get_atoms_met()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
EXCN_MembraneFoldTreeAP
)
get()
(in
BackboneTorsionPerturbationCreatorAP
)
get_atoms_met_downstream()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
EXCN_MembraneFoldTreeCAP
)
get()
(in
BackboneTorsionPerturbationCreatorCAP
)
get_atoms_phe()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
EXCN_Membrane_BoundsAP
)
get()
(in
BackboneTorsionSamplerAP
)
get_atoms_phe_downstream()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
EXCN_Membrane_BoundsCAP
)
get()
(in
BackboneTorsionSamplerCAP
)
get_atoms_pro()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
EXCN_NonMembraneAP
)
get()
(in
BackboneTorsionSamplerCreatorAP
)
get_atoms_pro_downstream()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
EXCN_NonMembraneCAP
)
get()
(in
BackboneTorsionSamplerCreatorCAP
)
get_atoms_ser()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
EXCN_Resource_DefinitionAP
)
get()
(in
CartesianHybridizeAP
)
get_atoms_ser_downstream()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
EXCN_Resource_DefinitionCAP
)
get()
(in
CartesianHybridizeCAP
)
get_atoms_thr()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
EXCN_VirtualRsdAP
)
get()
(in
CartesianSamplerAP
)
get_atoms_thr_downstream()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
EXCN_VirtualRsdCAP
)
get()
(in
CartesianSamplerCAP
)
get_atoms_trp()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
LipidAccInfoAP
)
get()
(in
CartesianSamplerCreatorAP
)
get_atoms_trp_downstream()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
LipidAccInfoCAP
)
get()
(in
CartesianSamplerCreatorCAP
)
get_atoms_tyr()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
MembraneInfoAP
)
get()
(in
ChunkTrialMoverAP
)
get_atoms_tyr_downstream()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
MembraneInfoCAP
)
get()
(in
ChunkTrialMoverCAP
)
get_atoms_val()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
SpanAP
)
get()
(in
DDomainParseAP
)
get_atoms_val_downstream()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
SpanCAP
)
get()
(in
DDomainParseCAP
)
get_AtomVDW()
(in
ScoringManager
)
get()
(in
SpanningTopologyAP
)
get()
(in
DomainAssemblyAP
)
get_attachments()
(in
StepWiseMoveSelector
)
get()
(in
SpanningTopologyCAP
)
get()
(in
DomainAssemblyCAP
)
get_autoinitialize()
(in
AnchoredDesignMover
)
get()
(in
OrbitalXYZCoordsAP
)
get()
(in
FoldTreeHybridizeAP
)
get_average_cation_pi_ip_to_neutral_ip_ratio()
(in
GasteigerAtomTypeData
)
get()
(in
OrbitalXYZCoordsCAP
)
get()
(in
FoldTreeHybridizeCAP
)
get_average_cation_sigma_ip_to_neutral_ip_ratio()
(in
GasteigerAtomTypeData
)
get()
(in
ParametersAP
)
get()
(in
FragmentBiasAssignerAP
)
get_average_ip_change_cation_to_neutral()
(in
GasteigerAtomTypeData
)
get()
(in
ParametersCAP
)
get()
(in
FragmentBiasAssignerCAP
)
get_average_ip_change_neutral_to_anion()
(in
GasteigerAtomTypeData
)
get()
(in
ParametersSetAP
)
get()
(in
HybridizeFoldtreeDynamicAP
)
get_average_neutral_pi_ip_to_anion_ip_ratio()
(in
GasteigerAtomTypeData
)
get()
(in
ParametersSetCAP
)
get()
(in
HybridizeFoldtreeDynamicCAP
)
get_average_neutral_sigma_ip_to_anion_ip_ratio()
(in
GasteigerAtomTypeData
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
HybridizeProtocolAP
)
get_avg_dis_CA_CA()
(in
StrandBundleFeatures
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
HybridizeProtocolCAP
)
get_avg_dis_CA_CA()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
ConnectionEventAP
)
get()
(in
HybridizeProtocolCreatorAP
)
get_avg_dis_strands()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
ConnectionEventCAP
)
get()
(in
HybridizeProtocolCreatorCAP
)
get_b()
(in
UnionEdge
)
get()
(in
GeneralEventAP
)
get()
(in
InsertChunkMoverAP
)
get_b_axis()
(in
EllipsoidalRandomizationMover
)
get()
(in
GeneralEventCAP
)
get()
(in
InsertChunkMoverCAP
)
get_backbone_currently_assigned()
(in
FlexbbInteractionGraph
)
get()
(in
IdentityEventAP
)
get()
(in
MRMoverAP
)
get_backbone_for_current_state()
(in
FlexbbNode
)
get()
(in
IdentityEventCAP
)
get()
(in
MRMoverCAP
)
get_backbone_list()
(in
FlexbbInteractionGraph
)
get()
(in
LengthEventAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_backbone_reference_frame()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
LengthEventCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_backbone_reference_frame_atomids()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
XYZEventAP
)
get()
(in
SingletonBase_T_protocols_jumping_StandardPairingLibrary_TAP
)
get_backbone_reference_frame_atomids_with_downstream()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
XYZEventCAP
)
get()
(in
SingletonBase_T_protocols_jumping_StandardPairingLibrary_TCAP
)
get_backbone_segment()
(in
BackboneDB
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
TMalignAP
)
get_backrubmover()
(in
ShortBackrubMover
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
TMalignCAP
)
get_BAHangle()
(in
HBond
)
get()
(in
SymDofAP
)
get()
(in
TemplateHistory
)
get_base_centroid()
(in
RNA_CentroidInfo
)
get()
(in
SymDofCAP
)
get()
(in
TemplateHistoryAP
)
get_base_centroid_and_rotation_matrix()
(in
rosetta.protocols.toolbox.rigid_body._protocols_toolbox_rigid_body_
)
get()
(in
SymSlideInfoAP
)
get()
(in
TemplateHistoryCAP
)
get_base_coordinate_system()
(in
RNA_CentroidInfo
)
get()
(in
SymSlideInfoCAP
)
get()
(in
WeightedFragmentSmoothTrialMoverAP
)
get_base_pair_params()
(in
rosetta.core.scoring.dna._core_scoring_dna_
)
get()
(in
SymmDataAP
)
get()
(in
WeightedFragmentSmoothTrialMoverCAP
)
get_base_pair_steps()
(in
RNA_StructureParameters
)
get()
(in
SymmDataCAP
)
get()
(in
WeightedFragmentTrialMoverAP
)
get_base_pair_stub_slow()
(in
rosetta.core.scoring.dna._core_scoring_dna_
)
get()
(in
SymmDataLoaderAP
)
get()
(in
WeightedFragmentTrialMoverCAP
)
get_base_pairing_info()
(in
rosetta.protocols.farna._protocols_farna_
)
get()
(in
SymmDataLoaderCAP
)
get()
(in
IdealizeMoverAP
)
get_base_pairing_list()
(in
rosetta.protocols.farna._protocols_farna_
)
get()
(in
SymmDataLoaderCreatorAP
)
get()
(in
IdealizeMoverCAP
)
get_base_pucker()
(in
rosetta.core.scoring.dna._core_scoring_dna_
)
get()
(in
SymmDataLoaderCreatorCAP
)
get()
(in
IdealizeMoverCreatorAP
)
get_base_step_params()
(in
rosetta.core.scoring.dna._core_scoring_dna_
)
get()
(in
SymmDataOptionsAP
)
get()
(in
IdealizeMoverCreatorCAP
)
get_base_stub()
(in
rosetta.core.scoring.dna._core_scoring_dna_
)
get()
(in
SymmDataOptionsCAP
)
get()
(in
FragmentLookupFilterAP
)
get_basic_protein_sampler()
(in
rosetta.protocols.stepwise.sampler.protein._protocols_stepwise_sampler_protein_
)
get()
(in
SymmDataOptionsCreatorAP
)
get()
(in
FragmentLookupFilterCAP
)
get_batch_description()
(in
ReportToDB
)
get()
(in
SymmDataOptionsCreatorCAP
)
get()
(in
FragmentLookupFilterCreatorAP
)
get_batch_id()
(in
ProteinSilentReport
)
get()
(in
SymmetricConformationAP
)
get()
(in
FragmentLookupFilterCreatorCAP
)
get_batch_id()
(in
rosetta.protocols.features._protocols_features_
)
get()
(in
SymmetricConformationCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_batch_name()
(in
ReportToDB
)
get()
(in
SymmetryInfoAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_BAtorsion()
(in
HBond
)
get()
(in
SymmetryInfoCAP
)
get()
(in
FastaInputterAP
)
get_bb()
(in
MoveMap
)
get()
(in
VirtualCoordinateAP
)
get()
(in
FastaInputterCAP
)
get_bb()
(in
FlexbbSparseMatrixIndex
)
get()
(in
VirtualCoordinateCAP
)
get()
(in
InputterAP
)
get_bb()
(in
MakeRotLibJob
)
get()
(in
DofPassportAP
)
get()
(in
InputterCAP
)
get_bb()
(in
RotData
)
get()
(in
DofPassportCAP
)
get()
(in
InputterStreamAP
)
get_bb_alignment_and_transformation()
(in
MotifGraftMover
)
get()
(in
EXCN_Env_ExceptionAP
)
get()
(in
InputterStreamCAP
)
get_bb_alignment_and_transformation_wTipsExtraInfo()
(in
MotifGraftMover
)
get()
(in
EXCN_Env_ExceptionCAP
)
get()
(in
PDBInputterAP
)
get_bb_atoms_for_residue()
(in
KinematicMover
)
get()
(in
EXCN_FTSketchGraphAP
)
get()
(in
PDBInputterCAP
)
get_bb_bbE()
(in
RotamerSets
)
get()
(in
EXCN_FTSketchGraphCAP
)
get()
(in
SilentFileInputterAP
)
get_bb_distance()
(in
MotifGraftMover
)
get()
(in
EnvCoreAP
)
get()
(in
SilentFileInputterCAP
)
get_bb_for_state()
(in
FlexbbInteractionGraph
)
get()
(in
EnvCoreCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_bb_for_state()
(in
FlexbbNode
)
get()
(in
FoldTreeSketchAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_bb_id()
(in
RotData
)
get()
(in
FoldTreeSketchCAP
)
get()
(in
AtomTreeDiffJobInputterAP
)
get_bb_ids()
(in
MakeRotLibJob
)
get()
(in
LocalPositionAP
)
get()
(in
AtomTreeDiffJobInputterCAP
)
get_bb_ids()
(in
MakeRotLibOptionsData
)
get()
(in
LocalPositionCAP
)
get()
(in
AtomTreeDiffJobInputterCreatorAP
)
get_bb_interface_builder()
(in
MoveMapBuilder
)
get()
(in
SequenceAnnotationAP
)
get()
(in
AtomTreeDiffJobInputterCreatorCAP
)
get_bb_range()
(in
MakeRotLibOptionsData
)
get()
(in
SequenceAnnotationCAP
)
get()
(in
AtomTreeDiffJobOutputterAP
)
get_bbcsts()
(in
rosetta.protocols.protein_interface_design._protocols_protein_interface_design_
)
get()
(in
AnnotatedFragDataAP
)
get()
(in
AtomTreeDiffJobOutputterCAP
)
get_bbs()
(in
MakeRotLibJob
)
get()
(in
AnnotatedFragDataCAP
)
get()
(in
AtomTreeDiffJobOutputterCreatorAP
)
get_bbs()
(in
RotData
)
get()
(in
BBTorsionAndAnglesSRFDAP
)
get()
(in
AtomTreeDiffJobOutputterCreatorCAP
)
get_best_energy_stub()
(in
HotspotStubSet
)
get()
(in
BBTorsionAndAnglesSRFDCAP
)
get()
(in
BOINCJobDistributorAP
)
get_best_neighboring_shift_RMSD_and_output_silent_file()
(in
StepWiseRNA_Clusterer
)
get()
(in
BBTorsionSRFDAP
)
get()
(in
BOINCJobDistributorCAP
)
get_bestpose()
(in
FilterStructs
)
get()
(in
BBTorsionSRFDCAP
)
get()
(in
BatchJobInputterAP
)
get_beta_pairs()
(in
StrandPairing
)
get()
(in
BaseCacheUnitAP
)
get()
(in
BatchJobInputterCAP
)
get_beta_pairs()
(in
StrandPairingSet
)
get()
(in
BaseCacheUnitCAP
)
get()
(in
CompareTagsAP
)
get_bias_sampling()
(in
BoltzmannRotamerMover
)
get()
(in
ConstFrameIteratorAP
)
get()
(in
CompareTagsCAP
)
get_bias_sampling()
(in
CoupledMover
)
get()
(in
ConstFrameIteratorCAP
)
get()
(in
DebugOut_MpiFileBufferAP
)
get_big_bin()
(in
StepWiseProteinBackboneSampler
)
get()
(in
ConstantLengthFragSetAP
)
get()
(in
DebugOut_MpiFileBufferCAP
)
get_bin_and_pos()
(in
VoxelSetIterator
)
get()
(in
ConstantLengthFragSetCAP
)
get()
(in
FileJobOutputterAP
)
get_bin_size()
(in
SplineFunc
)
get()
(in
ConstantLengthFragSetIterator_AP
)
get()
(in
FileJobOutputterCAP
)
get_binary_name()
(in
RotamerLibrary
)
get()
(in
ConstantLengthFragSetIterator_CAP
)
get()
(in
FileSystemJobDistributorAP
)
get_binary_rna_silent_struct_safe()
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
get()
(in
DownJumpSRFDAP
)
get()
(in
FileSystemJobDistributorCAP
)
get_binary_rna_silent_struct_safe_wrapper()
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
get()
(in
DownJumpSRFDCAP
)
get()
(in
InnerJobAP
)
get_binding_energy()
(in
RNA_DMS_Potential
)
get()
(in
FragDataAP
)
get()
(in
InnerJobCAP
)
get_bins()
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
get()
(in
FragDataCAP
)
get()
(in
InnerMultiThreadingJobAP
)
get_bins_per_A2()
(in
Etable
)
get()
(in
FragFactoryAP
)
get()
(in
InnerMultiThreadingJobCAP
)
get_boltzmann_rotamer_mover()
(in
CoupledMover
)
get()
(in
FragFactoryCAP
)
get()
(in
JD2ResourceManagerAP
)
get_boltzmann_temp()
(in
GeneralizedKICselector
)
get()
(in
FragIDAP
)
get()
(in
JD2ResourceManagerCAP
)
get_bond()
(in
rosetta.core.chemical._core_chemical_
)
get()
(in
FragIDCAP
)
get()
(in
JD2ResourceManagerCreatorAP
)
get_bond_length()
(in
IdealBondLengthSet
)
get()
(in
FragID_IteratorAP
)
get()
(in
JD2ResourceManagerCreatorCAP
)
get_bool_idx()
(in
rosetta.core.scoring.rna.data._core_scoring_rna_data_
)
get()
(in
FragID_IteratorCAP
)
get()
(in
JD2ResourceManagerJobInputterAP
)
get_boolean_option()
(in
rosetta.basic._basic_
)
get()
(in
FragSetAP
)
get()
(in
JD2ResourceManagerJobInputterCAP
)
get_boolean_option()
(in
rosetta.basic.options._basic_options_
)
get()
(in
FragSetCAP
)
get()
(in
JD2ResourceManagerJobInputterCreatorAP
)
get_boolean_vector_option()
(in
rosetta.basic._basic_
)
get()
(in
FragSetCollectionAP
)
get()
(in
JD2ResourceManagerJobInputterCreatorCAP
)
get_boolean_vector_option()
(in
rosetta.basic.options._basic_options_
)
get()
(in
FragSetCollectionCAP
)
get()
(in
JobAP
)
get_boundary_neighs()
(in
FAElecContextData
)
get()
(in
FragmentIOAP
)
get()
(in
JobCAP
)
get_branching_atoms2()
(in
rosetta.protocols.branch_angle._protocols_branch_angle_
)
get()
(in
FragmentIOCAP
)
get()
(in
JobDistributorAP
)
get_bridge_res()
(in
rosetta.protocols.stepwise.modeler.protein._protocols_stepwise_modeler_protein_
)
get()
(in
FragmentRmsdAP
)
get()
(in
JobDistributorCAP
)
get_build_all_loops()
(in
IndependentLoopMover
)
get()
(in
FragmentRmsdCAP
)
get()
(in
JobDistributorFactoryAP
)
get_build_attempts()
(in
IndependentLoopMover
)
get()
(in
FrameAP
)
get()
(in
JobDistributorFactoryCAP
)
get_build_ideal_geometry()
(in
GeneralizedKIC
)
get()
(in
FrameCAP
)
get()
(in
JobInputterAP
)
get_buildingblock_and_neighbor_subs()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
FrameIteratorAP
)
get()
(in
JobInputterCAP
)
get_bump_check()
(in
BoltzmannRotamerMover
)
get()
(in
FrameIteratorCAP
)
get()
(in
JobInputterCreatorAP
)
get_bump_check()
(in
CoupledMover
)
get()
(in
FrameIteratorWorker_AP
)
get()
(in
JobInputterCreatorCAP
)
get_bump_overlap_factor()
(in
ClashBasedRepackShellSelector
)
get()
(in
FrameIteratorWorker_CAP
)
get()
(in
JobInputterFactoryAP
)
get_bump_overlap_factor()
(in
KinematicMover
)
get()
(in
FrameListAP
)
get()
(in
JobInputterFactoryCAP
)
get_bumpcheck_atom_count_for_residue()
(in
KinematicMover
)
get()
(in
FrameListCAP
)
get()
(in
JobOutputterAP
)
get_bumpcheck_atoms_for_residue()
(in
KinematicMover
)
get()
(in
FrameListIterator_AP
)
get()
(in
JobOutputterCAP
)
get_c2f()
(in
ElectronDensity
)
get()
(in
FrameListIterator_CAP
)
get()
(in
JobOutputterCreatorAP
)
get_c_alpha_centroid()
(in
EllipsoidalRandomizationMover
)
get()
(in
IndependentBBTorsionSRFDAP
)
get()
(in
JobOutputterCreatorCAP
)
get_c_alpha_non_ellipsoid_centroid()
(in
EllipsoidalRandomizationMover
)
get()
(in
IndependentBBTorsionSRFDCAP
)
get()
(in
JobOutputterFactoryAP
)
get_c_axis()
(in
EllipsoidalRandomizationMover
)
get()
(in
JumpingFrameAP
)
get()
(in
JobOutputterFactoryCAP
)
get_c_cyd_seqpos()
(in
DisulfideInsertionMover
)
get()
(in
JumpingFrameCAP
)
get()
(in
JobOutputterObserverAP
)
get_c_repeat()
(in
FiberDiffractionOptions
)
get()
(in
NonContinuousFrameAP
)
get()
(in
JobOutputterObserverCAP
)
get_ca_bfactors()
(in
BfactorMPM
)
get()
(in
NonContinuousFrameCAP
)
get()
(in
LazySilentFileJobInputterAP
)
get_CA_vectors()
(in
rosetta.core.scoring.dssp._core_scoring_dssp_
)
get()
(in
OrderedFragSetAP
)
get()
(in
LazySilentFileJobInputterCAP
)
get_CA_xyz()
(in
PDBSilentStruct
)
get()
(in
OrderedFragSetCAP
)
get()
(in
LazySilentFileJobInputterCreatorAP
)
get_CA_xyz()
(in
BinarySilentStruct
)
get()
(in
OrderedFragSetIterator_AP
)
get()
(in
LazySilentFileJobInputterCreatorCAP
)
get_CA_xyz()
(in
RNA_SilentStruct
)
get()
(in
OrderedFragSetIterator_CAP
)
get()
(in
MPIFileBufJobDistributorAP
)
get_CA_xyz()
(in
RigidBodySilentStruct
)
get()
(in
SecondaryStructureAP
)
get()
(in
MPIFileBufJobDistributorCAP
)
get_CA_xyz()
(in
ScoreFileSilentStruct
)
get()
(in
SecondaryStructureCAP
)
get()
(in
MPIMultiCommJobDistributorAP
)
get_CA_xyz()
(in
ScoreJumpFileSilentStruct
)
get()
(in
SecstructSRFDAP
)
get()
(in
MPIMultiCommJobDistributorCAP
)
get_CA_xyz()
(in
SilentStruct
)
get()
(in
SecstructSRFDCAP
)
get()
(in
MPIWorkPartitionJobDistributorAP
)
get_cacheable_cluster_data()
(in
CDRClusterSet
)
get()
(in
SingleResidueFragDataAP
)
get()
(in
MPIWorkPartitionJobDistributorCAP
)
get_calc_rot_freq()
(in
SimAnnealerBase
)
get()
(in
SingleResidueFragDataCAP
)
get()
(in
MPIWorkPoolJobDistributorAP
)
get_calculator()
(in
RestrictToNeighborhoodOperation
)
get()
(in
UpJumpSRFDAP
)
get()
(in
MPIWorkPoolJobDistributorCAP
)
get_calculator_name()
(in
RestrictToNeighborhoodOperation
)
get()
(in
UpJumpSRFDCAP
)
get()
(in
MSDJobDistributorAP
)
get_candidate_i()
(in
NonlocalPair
)
get()
(in
FragmentLibraryManagerAP
)
get()
(in
MSDJobDistributorCAP
)
get_candidate_i_rank()
(in
NonlocalPair
)
get()
(in
FragmentLibraryManagerCAP
)
get()
(in
MpiFileBufferAP
)
get_candidate_j()
(in
NonlocalPair
)
get()
(in
SingletonBase_T_core_fragment_picking_old_FragmentLibraryManager_TAP
)
get()
(in
MpiFileBufferCAP
)
get_candidate_j_rank()
(in
NonlocalPair
)
get()
(in
SingletonBase_T_core_fragment_picking_old_FragmentLibraryManager_TCAP
)
get()
(in
NoOutputJobOutputterAP
)
get_candidates()
(in
BoundedCollector_T_protocols_frag_picker_CompareTotalScore_T
)
get()
(in
Book_T_core_fragment_picking_old_vall_VallResidues_TAP
)
get()
(in
NoOutputJobOutputterCAP
)
get_candidates()
(in
CandidatesCollector
)
get()
(in
Book_T_core_fragment_picking_old_vall_VallResidues_TCAP
)
get()
(in
NoOutputJobOutputterCreatorAP
)
get_candidates()
(in
GrabAllCollector
)
get()
(in
Book_VallResiduesAP
)
get()
(in
NoOutputJobOutputterCreatorCAP
)
get_candidates()
(in
ABEGO_SS_Pool
)
get()
(in
Book_VallResiduesCAP
)
get()
(in
PDBJobInputterAP
)
get_candidates()
(in
QuotaCollector
)
get()
(in
Extent_T__core_fragment_picking_old_vall_VallSection_PageConstIterator__TAP
)
get()
(in
PDBJobInputterCAP
)
get_candidates()
(in
QuotaPool
)
get()
(in
Extent_T__core_fragment_picking_old_vall_VallSection_PageConstIterator__TCAP
)
get()
(in
PDBJobInputterCreatorAP
)
get_candidates()
(in
SecondaryStructurePool
)
get()
(in
Librarian_T_core_fragment_picking_old_vall_scores_VallFragmentScore_core_fragment_picking_old_vall_eval_VallFragmentEval_core_fragment_picking_old_vall_gen_VallFragmentGen_core_fragment_picking_old_vall_VallLibrary_TAP
)
get()
(in
PDBJobInputterCreatorCAP
)
get_candidates_collector()
(in
FragmentPicker
)
get()
(in
Librarian_T_core_fragment_picking_old_vall_scores_VallFragmentScore_core_fragment_picking_old_vall_eval_VallFragmentEval_core_fragment_picking_old_vall_gen_VallFragmentGen_core_fragment_picking_old_vall_VallLibrary_TCAP
)
get()
(in
PDBJobOutputterAP
)
get_CarbonHBondPotential()
(in
ScoringManager
)
get()
(in
Librarian_VallFragmentScore_VallFragmentEval_VallFragmentGen_VallLibraryAP
)
get()
(in
PDBJobOutputterCAP
)
get_cartesian()
(in
RRProtocolRTMin
)
get()
(in
Librarian_VallFragmentScore_VallFragmentEval_VallFragmentGen_VallLibraryCAP
)
get()
(in
PDBJobOutputterCreatorAP
)
get_cartesian()
(in
RRProtocolRelax
)
get()
(in
Library_T_core_fragment_picking_old_vall_VallSections_TAP
)
get()
(in
PDBJobOutputterCreatorCAP
)
get_cartesian_bonded_linear()
(in
EnergyMethodOptions
)
get()
(in
Library_T_core_fragment_picking_old_vall_VallSections_TCAP
)
get()
(in
ParserAP
)
get_cartesian_bonded_parameters()
(in
EnergyMethodOptions
)
get()
(in
Library_VallSectionsAP
)
get()
(in
ParserCAP
)
get_cav_approx()
(in
VIP_Mover
)
get()
(in
Library_VallSectionsCAP
)
get()
(in
PoseInputStreamJobInputterAP
)
get_cavities()
(in
AddCavitiesMover
)
get()
(in
VallLibrarianAP
)
get()
(in
PoseInputStreamJobInputterCAP
)
get_cavity_positions()
(in
VIP_Mover
)
get()
(in
VallLibrarianCAP
)
get()
(in
PoseInputStreamJobInputterCreatorAP
)
get_CB_Vecs_from_map()
(in
rosetta.protocols.sic_dock._protocols_sic_dock_
)
get()
(in
VallLibraryAP
)
get()
(in
PoseInputStreamJobInputterCreatorCAP
)
get_CB_Vecs_from_pose()
(in
rosetta.protocols.sic_dock._protocols_sic_dock_
)
get()
(in
VallLibraryCAP
)
get()
(in
ScoreMapAP
)
get_cdr_bool_from_tag()
(in
rosetta.protocols.antibody._protocols_antibody_
)
get()
(in
VallResidueAP
)
get()
(in
ScoreMapCAP
)
get_CDR_chain()
(in
AntibodyInfo
)
get()
(in
VallResidueCAP
)
get()
(in
ScoreOnlyJobOutputterAP
)
get_CDR_cluster()
(in
AntibodyInfo
)
get()
(in
VallResiduesAP
)
get()
(in
ScoreOnlyJobOutputterCAP
)
get_cdr_cluster()
(in
CDRClusterMatcher
)
get()
(in
VallResiduesCAP
)
get()
(in
ScoreOnlyJobOutputterCreatorAP
)
get_cdr_cluster_enum_manager()
(in
AntibodyInfo
)
get()
(in
VallSectionAP
)
get()
(in
ScoreOnlyJobOutputterCreatorCAP
)
get_CDR_cluster_set()
(in
AntibodyInfo
)
get()
(in
VallSectionCAP
)
get()
(in
ScreeningJobInputterAP
)
get_cdr_design_options()
(in
AntibodySeqDesignTFCreator
)
get()
(in
VallSectionsAP
)
get()
(in
ScreeningJobInputterCAP
)
get_CDR_end()
(in
AntibodyInfo
)
get()
(in
VallSectionsCAP
)
get()
(in
ScreeningJobInputterCreatorAP
)
get_CDR_end_PDB_num()
(in
AntibodyInfo
)
get()
(in
ABEGOEvalAP
)
get()
(in
ScreeningJobInputterCreatorCAP
)
get_cdr_enum_for_cluster()
(in
AntibodyInfo
)
get()
(in
ABEGOEvalCAP
)
get()
(in
ShuffleFileSystemJobDistributorAP
)
get_CDR_in_loopsop()
(in
AntibodyInfo
)
get()
(in
EnergyEvalAP
)
get()
(in
ShuffleFileSystemJobDistributorCAP
)
get_CDR_length()
(in
AntibodyInfo
)
get()
(in
EnergyEvalCAP
)
get()
(in
SilentFileJobInputterAP
)
get_CDR_loop()
(in
AntibodyInfo
)
get()
(in
IdentityEvalAP
)
get()
(in
SilentFileJobInputterCAP
)
get_cdr_loop_with_overhang()
(in
AntibodyDesignModeler
)
get()
(in
IdentityEvalCAP
)
get()
(in
SilentFileJobInputterCreatorAP
)
get_CDR_loops()
(in
AntibodyInfo
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
SilentFileJobInputterCreatorCAP
)
get_cdr_loops()
(in
rosetta.protocols.antibody._protocols_antibody_
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
SilentFileJobOutputterAP
)
get_cdr_loops()
(in
AntibodyDesignModeler
)
get()
(in
VallFragmentEvalAP
)
get()
(in
SilentFileJobOutputterCAP
)
get_cdr_loops_with_overhang()
(in
AntibodyDesignModeler
)
get()
(in
VallFragmentEvalCAP
)
get()
(in
SilentFileJobOutputterCreatorAP
)
get_CDR_name()
(in
AntibodyInfo
)
get()
(in
LengthGenAP
)
get()
(in
SilentFileJobOutputterCreatorCAP
)
get_CDR_name_enum()
(in
AntibodyInfo
)
get()
(in
LengthGenCAP
)
get()
(in
SingleFileBufferAP
)
get_CDR_sequence_with_stem()
(in
AntibodyInfo
)
get()
(in
SecStructGenAP
)
get()
(in
SingleFileBufferCAP
)
get_cdr_set_options()
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
get()
(in
SecStructGenCAP
)
get()
(in
SingletonBase_T_basic_resource_manager_ResourceManager_TAP
)
get_CDR_start()
(in
AntibodyInfo
)
get()
(in
VallFragmentGenAP
)
get()
(in
SingletonBase_T_basic_resource_manager_ResourceManager_TCAP
)
get_CDR_start_PDB_num()
(in
AntibodyInfo
)
get()
(in
VallFragmentGenCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_cdrs_movemap_with_overhang()
(in
AntibodyDesignModeler
)
get()
(in
VallFragmentScoreAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_cellDimensions()
(in
ElectronDensity
)
get()
(in
VallFragmentScoreCAP
)
get()
(in
SingletonBase_T_protocols_jd2_JobInputterFactory_TAP
)
get_cen_dist()
(in
RotData
)
get()
(in
DS_NodeAP
)
get()
(in
SingletonBase_T_protocols_jd2_JobInputterFactory_TCAP
)
get_cen_scorefxn()
(in
rosetta.protocols.loops._protocols_loops_
)
get()
(in
DS_NodeCAP
)
get()
(in
SingletonBase_T_protocols_jd2_JobOutputterFactory_TAP
)
get_CenHBPotential()
(in
ScoringManager
)
get()
(in
DisjointSetsAP
)
get()
(in
SingletonBase_T_protocols_jd2_JobOutputterFactory_TCAP
)
get_cenlist_from_pose()
(in
MembraneData
)
get()
(in
DisjointSetsCAP
)
get()
(in
WriteFileSFBAP
)
get_CenRotEnvPairPotential()
(in
ScoringManager
)
get()
(in
EdgeAP
)
get()
(in
WriteFileSFBCAP
)
get_center()
(in
SmallMol
)
get()
(in
EdgeCAP
)
get()
(in
WriteOut_MpiFileBufferAP
)
get_center_ndx()
(in
KClusterElement
)
get()
(in
EdgeListAP
)
get()
(in
WriteOut_MpiFileBufferCAP
)
get_center_of_mass()
(in
rosetta.core.pose._core_pose_
)
get()
(in
EdgeListCAP
)
get()
(in
AbstractArchiveBaseAP
)
get_central_residues()
(in
RestrictToNeighborhoodOperation
)
get()
(in
EdgeListConstIteratorAP
)
get()
(in
AbstractArchiveBaseCAP
)
get_central_residues_in_each_of_two_edge_strands()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
EdgeListConstIteratorCAP
)
get()
(in
ArchiveBaseAP
)
get_central_residues_in_other_sheet()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
EdgeListElementAP
)
get()
(in
ArchiveBaseCAP
)
get_central_residues_in_this_sheet()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
EdgeListElementCAP
)
get()
(in
ArchiveManagerAP
)
get_centroid_data()
(in
MakeRotLibOptionsData
)
get()
(in
EdgeListIteratorAP
)
get()
(in
ArchiveManagerCAP
)
get_centroid_dG()
(in
InterfaceAnalyzerMover
)
get()
(in
EdgeListIteratorCAP
)
get()
(in
BaseArchiveManagerAP
)
get_centroid_scorefunction()
(in
AnchorMoversData
)
get()
(in
GraphAP
)
get()
(in
BaseArchiveManagerCAP
)
get_centroid_scorefunction_min()
(in
AnchorMoversData
)
get()
(in
GraphCAP
)
get()
(in
BatchAP
)
get_CentroidDisulfidePotential()
(in
ScoringManager
)
get()
(in
NodeAP
)
get()
(in
BatchCAP
)
get_chain()
(in
rosetta.protocols.stepwise.setup._protocols_stepwise_setup_
)
get()
(in
NodeCAP
)
get()
(in
EXCN_ArchiveAP
)
get_chain_and_z()
(in
rosetta.protocols.membrane.geometry._protocols_membrane_geometry_
)
get()
(in
AtomIDAP
)
get()
(in
EXCN_ArchiveCAP
)
get_chain_B_resNum()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
AtomIDCAP
)
get()
(in
EvaluatedArchiveAP
)
get_chain_connections()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
get()
(in
AtomID_Map_AtomIDAP
)
get()
(in
EvaluatedArchiveCAP
)
get_chain_for_full_model_resnum()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
get()
(in
AtomID_Map_AtomIDCAP
)
get()
(in
MPIArchiveJobDistributorAP
)
get_chain_for_resnum()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
get()
(in
AtomID_Map_RealAP
)
get()
(in
MPIArchiveJobDistributorCAP
)
get_chain_from_chain_id()
(in
rosetta.core.pose._core_pose_
)
get()
(in
AtomID_Map_RealCAP
)
get()
(in
NormalizedEvaluatedArchiveAP
)
get_chain_from_jump_id()
(in
rosetta.core.pose._core_pose_
)
get()
(in
AtomID_Map_T_bool_T
)
get()
(in
NormalizedEvaluatedArchiveCAP
)
get_chain_groups()
(in
InterfaceAnalyzerMover
)
get()
(in
AtomID_Map_T_bool_TAP
)
get()
(in
VarianceStatisticsArchiveAP
)
get_chain_id()
(in
FragmentCandidate
)
get()
(in
AtomID_Map_T_bool_TCAP
)
get()
(in
VarianceStatisticsArchiveCAP
)
get_chain_id()
(in
VallChunk
)
get()
(in
AtomID_Map_T_core_id_AtomID_T
)
get()
(in
BluePrintAP
)
get_chain_id()
(in
Translate
)
get()
(in
AtomID_Map_T_core_id_AtomID_TAP
)
get()
(in
BluePrintCAP
)
get_chain_id_from_chain()
(in
rosetta.core.pose._core_pose_
)
get()
(in
AtomID_Map_T_core_id_AtomID_TCAP
)
get()
(in
DataLoaderAP
)
get_chain_id_from_jump_id()
(in
rosetta.core.pose._core_pose_
)
get()
(in
AtomID_Map_T_double_T
)
get()
(in
DataLoaderCAP
)
get_chain_ids_from_chain()
(in
rosetta.core.pose._core_pose_
)
get()
(in
AtomID_Map_T_double_TAP
)
get()
(in
DataLoaderCreatorAP
)
get_chain_ids_from_chains()
(in
rosetta.core.pose._core_pose_
)
get()
(in
AtomID_Map_T_double_TCAP
)
get()
(in
DataLoaderCreatorCAP
)
get_chain_residues()
(in
rosetta.core.pose._core_pose_
)
get()
(in
AtomID_Map_T_numeric_xyzVector_T_double_T__T
)
get()
(in
DataLoaderFactoryAP
)
get_chainbreak_scores()
(in
LoopAnalyzerMover
)
get()
(in
AtomID_Map_T_numeric_xyzVector_T_double_T__TAP
)
get()
(in
DataLoaderFactoryCAP
)
get_chainbreak_weight()
(in
AnchorMoversData
)
get()
(in
AtomID_Map_T_numeric_xyzVector_T_double_T__TCAP
)
get()
(in
FragSetLoaderAP
)
get_chains_from_cutpoint_open()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
get()
(in
AtomID_Map_boolAP
)
get()
(in
FragSetLoaderCAP
)
get_chains_from_pdb_info()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
get()
(in
AtomID_Map_boolCAP
)
get()
(in
FragSetLoaderCreatorAP
)
get_chains_full()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
get()
(in
BondIDAP
)
get()
(in
FragSetLoaderCreatorCAP
)
get_charged_residues_map()
(in
PBLifetimeCache
)
get()
(in
BondIDCAP
)
get()
(in
FragmentReaderAP
)
get_cheating_frags()
(in
VallData
)
get()
(in
CacheableAtomID_MapVectorAP
)
get()
(in
FragmentReaderCAP
)
get_cheating_frags()
(in
rosetta.protocols.frags._protocols_frags_
)
get()
(in
CacheableAtomID_MapVectorCAP
)
get()
(in
MonteCarloLoaderAP
)
get_checkpoint_recoveries()
(in
CheckPointer
)
get()
(in
DOF_IDAP
)
get()
(in
MonteCarloLoaderCAP
)
get_checkpoints()
(in
ClassicAbinitio
)
get()
(in
DOF_IDCAP
)
get()
(in
MonteCarloLoaderCreatorAP
)
get_checkpoints()
(in
ConstraintFragmentSampler
)
get()
(in
DOF_ID_RangeAP
)
get()
(in
MonteCarloLoaderCreatorCAP
)
get_checkpoints()
(in
DoubleLayerKinematicAbinitio
)
get()
(in
DOF_ID_RangeCAP
)
get()
(in
ResidueSelectorLoaderAP
)
get_checkpoints()
(in
FoldConstraints
)
get()
(in
EXCN_AtomNotFoundAP
)
get()
(in
ResidueSelectorLoaderCAP
)
get_checkpoints()
(in
FragmentSampler
)
get()
(in
EXCN_AtomNotFoundCAP
)
get()
(in
ResidueSelectorLoaderCreatorAP
)
get_checkpoints()
(in
JumpingFoldConstraintsWrapper
)
get()
(in
JumpIDAP
)
get()
(in
ResidueSelectorLoaderCreatorCAP
)
get_checkpoints()
(in
KinematicAbinitio
)
get()
(in
JumpIDCAP
)
get()
(in
ScoreFunctionLoaderAP
)
get_checkpoints()
(in
KinematicTaskControl
)
get()
(in
NamedAtomIDAP
)
get()
(in
ScoreFunctionLoaderCAP
)
get_checkpoints()
(in
LoopJumpFoldCst
)
get()
(in
NamedAtomIDCAP
)
get()
(in
ScoreFunctionLoaderCreatorAP
)
get_checkpoints()
(in
MembraneAbinitio
)
get()
(in
NamedAtomID_Map_NamedAtomIDAP
)
get()
(in
ScoreFunctionLoaderCreatorCAP
)
get_checkpoints()
(in
Protocol
)
get()
(in
NamedAtomID_Map_NamedAtomIDCAP
)
get()
(in
TaskOperationLoaderAP
)
get_checkpoints()
(in
LoopMover
)
get()
(in
NamedAtomID_Map_T_core_id_NamedAtomID_T
)
get()
(in
TaskOperationLoaderCAP
)
get_checkpoints()
(in
ClassicRelax
)
get()
(in
NamedAtomID_Map_T_core_id_NamedAtomID_TAP
)
get()
(in
TaskOperationLoaderCreatorAP
)
get_chemical_name()
(in
Element
)
get()
(in
NamedAtomID_Map_T_core_id_NamedAtomID_TCAP
)
get()
(in
TaskOperationLoaderCreatorCAP
)
get_chemical_root_and_anchor_atomnos()
(in
rosetta.core.conformation._core_conformation_
)
get()
(in
NamedStubIDAP
)
get()
(in
AtomTreeDiffJobDistributorAP
)
get_chemical_symbol()
(in
Element
)
get()
(in
NamedStubIDCAP
)
get()
(in
AtomTreeDiffJobDistributorCAP
)
get_chi()
(in
MoveMap
)
get()
(in
SequenceMappingAP
)
get()
(in
BaseJobDistributorAP
)
get_chi_data()
(in
MakeRotLibOptionsData
)
get()
(in
SequenceMappingCAP
)
get()
(in
BaseJobDistributorCAP
)
get_chi_xx()
(in
PcsTensor
)
get()
(in
StubIDAP
)
get()
(in
BasicJob
)
get_chi_xy()
(in
PcsTensor
)
get()
(in
StubIDCAP
)
get()
(in
BasicJobAP
)
get_chi_xz()
(in
PcsTensor
)
get()
(in
TorsionIDAP
)
get()
(in
BasicJobCAP
)
get_chi_yy()
(in
PcsTensor
)
get()
(in
TorsionIDCAP
)
get()
(in
PlainPdbJobDistributorAP
)
get_chi_yz()
(in
PcsTensor
)
get()
(in
TorsionID_RangeAP
)
get()
(in
PlainPdbJobDistributorCAP
)
get_chi_zz()
(in
PcsTensor
)
get()
(in
TorsionID_RangeCAP
)
get()
(in
PlainRawJobDistributorAP
)
get_CHIEnergyFunction()
(in
ScoringManager
)
get()
(in
ImportPoseOptionsAP
)
get()
(in
PlainRawJobDistributorCAP
)
get_children_names()
(in
KicMover
)
get()
(in
ImportPoseOptionsCAP
)
get()
(in
PlainSilentFileJobDistributorAP
)
get_children_names()
(in
LoopBuilder
)
get()
(in
ImportPoseOptionsCreatorAP
)
get()
(in
PlainSilentFileJobDistributorCAP
)
get_children_names()
(in
LoopModeler
)
get()
(in
ImportPoseOptionsCreatorCAP
)
get()
(in
BaseDisulfPairingLibraryAP
)
get_children_names()
(in
LoopMover
)
get()
(in
PDBSilentStructAP
)
get()
(in
BaseDisulfPairingLibraryCAP
)
get_children_names()
(in
LoopProtocol
)
get()
(in
PDBSilentStructCAP
)
get()
(in
BaseJumpSetupAP
)
get_children_names()
(in
MinimizationRefiner
)
get()
(in
PDBSilentStructCreatorAP
)
get()
(in
BaseJumpSetupCAP
)
get_children_names()
(in
RepackingRefiner
)
get()
(in
PDBSilentStructCreatorCAP
)
get()
(in
BasePairingLibraryAP
)
get_children_names()
(in
RotamerTrialsRefiner
)
get()
(in
PoseFromPDBLoaderAP
)
get()
(in
BasePairingLibraryCAP
)
get_children_names()
(in
LegacyKicSampler
)
get()
(in
PoseFromPDBLoaderCAP
)
get()
(in
DisulfPairingAP
)
get_children_names()
(in
AcceptanceCheck
)
get()
(in
PoseFromPDBLoaderCreatorAP
)
get()
(in
DisulfPairingCAP
)
get_children_names()
(in
LoopFilter
)
get()
(in
PoseFromPDBLoaderCreatorCAP
)
get()
(in
DisulfPairingLibraryAP
)
get_children_names()
(in
LoopMoverGroup
)
get()
(in
AtomTreeDiffAP
)
get()
(in
DisulfPairingLibraryCAP
)
get_children_names()
(in
PrepareForCentroid
)
get()
(in
AtomTreeDiffCAP
)
get()
(in
DisulfTemplateAP
)
get_children_names()
(in
PrepareForFullatom
)
get()
(in
ExtendedPoseInputStreamAP
)
get()
(in
DisulfTemplateCAP
)
get_chiral_residue_type()
(in
rosetta.protocols.simple_moves.chiral._protocols_simple_moves_chiral_
)
get()
(in
ExtendedPoseInputStreamCAP
)
get()
(in
IntervalAP
)
get_chirality_sign()
(in
rosetta.core.io.pdb._core_io_pdb_
)
get()
(in
LazySilentFilePoseInputStreamAP
)
get()
(in
IntervalCAP
)
get_chunk()
(in
FragmentCandidate
)
get()
(in
LazySilentFilePoseInputStreamCAP
)
get()
(in
JumpSampleAP
)
get_clash_checking()
(in
TargetRotamerCoords
)
get()
(in
MetaPoseInputStreamAP
)
get()
(in
JumpSampleCAP
)
get_clash_score()
(in
MotifMatch
)
get()
(in
MetaPoseInputStreamCAP
)
get()
(in
JumpSelectorAP
)
get_clash_score_from_pose()
(in
MotifGraftMover
)
get()
(in
PDBPoseInputStreamAP
)
get()
(in
JumpSelectorCAP
)
get_clashing_positions()
(in
ClashBasedRepackShellSelector
)
get()
(in
PDBPoseInputStreamCAP
)
get()
(in
JumpSetupAP
)
get_closest_cluster()
(in
CDRClusterMatcher
)
get()
(in
PoseInputStreamAP
)
get()
(in
JumpSetupCAP
)
get_closest_distance_between_strands()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
PoseInputStreamCAP
)
get()
(in
JumpsFromAllPairingsAP
)
get_closest_rotamer()
(in
SingleResidueCenrotLibrary
)
get()
(in
SilentFilePoseInputStreamAP
)
get()
(in
JumpsFromAllPairingsCAP
)
get_closest_sister()
(in
rosetta.core.io.pdb._core_io_pdb_
)
get()
(in
SilentFilePoseInputStreamCAP
)
get()
(in
MembraneJumpAP
)
get_closure_attempts()
(in
GeneralizedKIC
)
get()
(in
BinaryFragmentStoreBackendAP
)
get()
(in
MembraneJumpCAP
)
get_closure_solution()
(in
StepWiseProteinCCD_Closer
)
get()
(in
BinaryFragmentStoreBackendCAP
)
get()
(in
PairingLibraryAP
)
get_cluster()
(in
BasicCDRClusterSet
)
get()
(in
FragmentLookupAP
)
get()
(in
PairingLibraryCAP
)
get_cluster()
(in
CDRClusterSet
)
get()
(in
FragmentLookupCAP
)
get()
(in
PairingTemplateAP
)
get_cluster_center()
(in
Cluster
)
get()
(in
FragmentLookupResultAP
)
get()
(in
PairingTemplateCAP
)
get_cluster_data()
(in
CDRClusterSet
)
get()
(in
FragmentLookupResultCAP
)
get()
(in
RandomSheetBuilderAP
)
get_cluster_enum()
(in
AntibodyInfo
)
get()
(in
FragmentSpecificationAP
)
get()
(in
RandomSheetBuilderCAP
)
get_cluster_for()
(in
APCluster
)
get()
(in
FragmentSpecificationCAP
)
get()
(in
ResiduePairJumpAP
)
get_cluster_from_cache_or_ab_info()
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
get()
(in
FragmentStoreAP
)
get()
(in
ResiduePairJumpCAP
)
get_cluster_length()
(in
AntibodyInfo
)
get()
(in
FragmentStoreCAP
)
get()
(in
ResiduePairJumpSetupAP
)
get_cluster_list()
(in
ClusterBase
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
ResiduePairJumpSetupCAP
)
get_cluster_name()
(in
AntibodyInfo
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
ResiduePairJumpSingleAP
)
get_cluster_num()
(in
RotData
)
get()
(in
SingletonBase_T_core_indexed_structure_store_StructureStoreManager_TAP
)
get()
(in
ResiduePairJumpSingleCAP
)
get_cluster_profile_probability_data()
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
get()
(in
SingletonBase_T_core_indexed_structure_store_StructureStoreManager_TCAP
)
get()
(in
SameStrandAP
)
get_cluster_radius()
(in
ClusterBase
)
get()
(in
StructureStoreManagerAP
)
get()
(in
SameStrandCAP
)
get_clusterCenter()
(in
AlignmentCluster
)
get()
(in
StructureStoreManagerCAP
)
get()
(in
SheetBuilderAP
)
get_column_name()
(in
RowDataBase
)
get()
(in
AtomInformationAP
)
get()
(in
SheetBuilderCAP
)
get_comment()
(in
SilentStruct
)
get()
(in
AtomInformationCAP
)
get()
(in
SingletonBase_T_protocols_jumping_StandardDisulfPairingLibrary_TAP
)
get_comment()
(in
rosetta.core.pose._core_pose_
)
get()
(in
FieldAP
)
get()
(in
SingletonBase_T_protocols_jumping_StandardDisulfPairingLibrary_TCAP
)
get_complex_energy()
(in
InterfaceAnalyzerMover
)
get()
(in
FieldCAP
)
get()
(in
SingletonBase_T_protocols_jumping_StandardPairingLibrary_TAP
)
get_complexed_sasa()
(in
InterfaceAnalyzerMover
)
get()
(in
FileDataAP
)
get()
(in
SingletonBase_T_protocols_jumping_StandardPairingLibrary_TCAP
)
get_component()
(in
SymmetryInfo
)
get()
(in
FileDataCAP
)
get()
(in
SpecificGeometryLibraryAP
)
get_component()
(in
FragmentScoreManager
)
get()
(in
FileDataOptionsAP
)
get()
(in
SpecificGeometryLibraryCAP
)
get_component_bounds()
(in
SymmetryInfo
)
get()
(in
FileDataOptionsCAP
)
get()
(in
StandardDisulfPairingLibraryAP
)
get_component_lower_bound()
(in
SymmetryInfo
)
get()
(in
HeaderInformationAP
)
get()
(in
StandardDisulfPairingLibraryCAP
)
get_component_lower_bound()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
HeaderInformationCAP
)
get()
(in
StandardPairingLibraryAP
)
get_component_of_residue()
(in
SymmetryInfo
)
get()
(in
LinkInformationAP
)
get()
(in
StandardPairingLibraryCAP
)
get_component_of_residue()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
LinkInformationCAP
)
get()
(in
BalancedKicMoverAP
)
get_component_upper_bound()
(in
SymmetryInfo
)
get()
(in
PDB_DReaderAP
)
get()
(in
BalancedKicMoverCAP
)
get_component_upper_bound()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
PDB_DReaderCAP
)
get()
(in
ChainedSolutionListAP
)
get_components()
(in
SymmData
)
get()
(in
PDB_DReaderOptionsAP
)
get()
(in
ChainedSolutionListCAP
)
get_components()
(in
SymmetryInfo
)
get()
(in
PDB_DReaderOptionsCAP
)
get()
(in
ClosureProblemAP
)
get_conformation_to_turn_type_map()
(in
BetaTurnDetection
)
get()
(in
ResidueInformationAP
)
get()
(in
ClosureProblemCAP
)
get_conformer()
(in
DockingEnsemble
)
get()
(in
ResidueInformationCAP
)
get()
(in
ClosureSolutionAP
)
get_conformer_cen()
(in
DockingEnsemble
)
get()
(in
DecoyFileDataAP
)
get()
(in
ClosureSolutionCAP
)
get_connecting_atoms()
(in
rosetta.core.chemical._core_chemical_
)
get()
(in
DecoyFileDataCAP
)
get()
(in
IdealParametersAP
)
get_connection_domains()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
get()
(in
DecoyStructAP
)
get()
(in
IdealParametersCAP
)
get_connolly_eggshell()
(in
EggshellGrid
)
get()
(in
DecoyStructCAP
)
get()
(in
KicMoverAP
)
get_connolly_eggshell_on_grid()
(in
EggshellGrid
)
get()
(in
DisulfideFileAP
)
get()
(in
KicMoverCAP
)
get_connolly_surfacePoints()
(in
PocketGrid
)
get()
(in
DisulfideFileCAP
)
get()
(in
KicMoverCreatorAP
)
get_connolly_surfacePoints_within_grid()
(in
PocketGrid
)
get()
(in
RawFileDataAP
)
get()
(in
KicMoverCreatorCAP
)
get_const_ptr()
(in
DataCache_T_basic_datacache_CacheableData_T
)
get()
(in
RawFileDataCAP
)
get()
(in
BondAnglePerturberAP
)
get_constrainable_atoms_map()
(in
AtomBasedConstraintsScore
)
get()
(in
RawStructAP
)
get()
(in
BondAnglePerturberCAP
)
get_constrained_atom_id()
(in
AtomBasedConstraintsScore
)
get()
(in
RawStructCAP
)
get()
(in
FragmentPerturberAP
)
get_constrained_atom_name()
(in
AtomBasedConstraintsScore
)
get()
(in
ScoreFileDataAP
)
get()
(in
FragmentPerturberCAP
)
get_constraint_for_target_state()
(in
InvrotTree
)
get()
(in
ScoreFileDataCAP
)
get()
(in
IdealizeNonPhiPsiAP
)
get_constraint_weight()
(in
DisulfideInsertionMover
)
get()
(in
ScoreStructJSONAP
)
get()
(in
IdealizeNonPhiPsiCAP
)
get_contact()
(in
ContactMap
)
get()
(in
ScoreStructJSONCAP
)
get()
(in
LogFilePerturberAP
)
get_contacts()
(in
NonlocalPair
)
get()
(in
ScoreStructTextAP
)
get()
(in
LogFilePerturberCAP
)
get_coordinates()
(in
SmallMol
)
get()
(in
ScoreStructTextCAP
)
get()
(in
OmegaPerturberAP
)
get_coords_for_clash_check()
(in
TargetRotamerCoords
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
OmegaPerturberCAP
)
get_copy_dofs_from_fasta()
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
PerturberAP
)
get_count_of_jobs_associated_with_resource_tag()
(in
LazyResourceManager
)
get()
(in
RDATAP
)
get()
(in
PerturberCAP
)
get_count_pair_data_for_residue()
(in
RotamerTrieBase
)
get()
(in
RDATCAP
)
get()
(in
PerturberSetAP
)
get_count_pair_function()
(in
FA_ElecEnergy
)
get()
(in
RNA_DataReaderAP
)
get()
(in
PerturberSetCAP
)
get_count_pair_function()
(in
FA_GrpElecEnergy
)
get()
(in
RNA_DataReaderCAP
)
get()
(in
Rama2bPerturberAP
)
get_count_pair_function()
(in
AnalyticEtableEnergy
)
get()
(in
DesignContrastAP
)
get()
(in
Rama2bPerturberCAP
)
get_count_pair_function()
(in
BaseEtableEnergy_T_core_scoring_etable_AnalyticEtableEnergy_T
)
get()
(in
DesignContrastCAP
)
get()
(in
RamaPerturberAP
)
get_count_pair_function()
(in
BaseEtableEnergy_T_core_scoring_etable_TableLookupEtableEnergy_T
)
get()
(in
BUFFERAP
)
get()
(in
RamaPerturberCAP
)
get_count_pair_function()
(in
TableLookupEtableEnergy
)
get()
(in
BUFFERCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_count_pair_function()
(in
ContextDependentGeometricSolEnergy
)
get()
(in
BinarySilentStructAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_count_pair_function()
(in
ContextIndependentGeometricSolEnergy
)
get()
(in
BinarySilentStructCAP
)
get()
(in
UniformPerturberAP
)
get_count_pair_function()
(in
GeometricSolEnergyEvaluator
)
get()
(in
BinarySilentStructCreatorAP
)
get()
(in
UniformPerturberCAP
)
get_count_pair_function()
(in
LK_PolarNonPolarEnergy
)
get()
(in
BinarySilentStructCreatorCAP
)
get()
(in
VicinityPerturberAP
)
get_count_pair_function()
(in
MMLJEnergyInter
)
get()
(in
EnergyNamesAP
)
get()
(in
VicinityPerturberCAP
)
get_count_pair_function()
(in
MMLJEnergyIntra
)
get()
(in
EnergyNamesCAP
)
get()
(in
WalkingBondAnglePerturberAP
)
get_count_pair_function()
(in
RNA_FullAtomStackingEnergy
)
get()
(in
ProteinSilentStructCreatorAP
)
get()
(in
WalkingBondAnglePerturberCAP
)
get_count_pair_function()
(in
StackElecEnergy
)
get()
(in
ProteinSilentStructCreatorCAP
)
get()
(in
WalkingPerturberAP
)
get_count_pair_function_trie()
(in
MMLJEnergyInter
)
get()
(in
ProteinSilentStruct_SinglePrecCreatorAP
)
get()
(in
WalkingPerturberCAP
)
get_creator()
(in
SilentStructFactory
)
get()
(in
ProteinSilentStruct_SinglePrecCreatorCAP
)
get()
(in
EndToEndPivotsAP
)
get_creator()
(in
ConstraintFactory
)
get()
(in
RNA_SilentStructAP
)
get()
(in
EndToEndPivotsCAP
)
get_creator()
(in
SequenceFactory
)
get()
(in
RNA_SilentStructCAP
)
get()
(in
FixedOffsetPivotsAP
)
get_crick_parameters()
(in
FitSimpleHelix
)
get()
(in
RNA_SilentStructCreatorAP
)
get()
(in
FixedOffsetPivotsCAP
)
get_crossterm_interface_energy()
(in
InterfaceAnalyzerMover
)
get()
(in
RNA_SilentStructCreatorCAP
)
get()
(in
FixedPivotsAP
)
get_crossterm_interface_energy_ratio()
(in
InterfaceAnalyzerMover
)
get()
(in
RigidBodySilentStructAP
)
get()
(in
FixedPivotsCAP
)
get_CSA_data()
(in
ChemicalShiftAnisotropy
)
get()
(in
RigidBodySilentStructCAP
)
get()
(in
LoopPivotsAP
)
get_cst_fa_file_option()
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
get()
(in
RigidBodySilentStructCreatorAP
)
get()
(in
LoopPivotsCAP
)
get_cst_factory()
(in
ConstraintIO
)
get()
(in
RigidBodySilentStructCreatorCAP
)
get()
(in
PivotPickerAP
)
get_cst_file_name()
(in
SequenceProfileMover
)
get()
(in
ScoreFileSilentStructAP
)
get()
(in
PivotPickerCAP
)
get_cst_file_option()
(in
rosetta.core.scoring.constraints._core_scoring_constraints_
)
get()
(in
ScoreFileSilentStructCAP
)
get()
(in
StandardPivotsAP
)
get_cst_names()
(in
ConstraintFactory
)
get()
(in
ScoreFileSilentStructCreatorAP
)
get()
(in
StandardPivotsCAP
)
get_Cstem_foldtree()
(in
GraftedStemOptimizer
)
get()
(in
ScoreFileSilentStructCreatorCAP
)
get()
(in
FilteredSolutionsAP
)
get_cstyle_A()
(in
PcsDataLanthanide
)
get()
(in
ScoreJumpFileSilentStructAP
)
get()
(in
FilteredSolutionsCAP
)
get_cstyle_b()
(in
PcsDataLanthanide
)
get()
(in
ScoreJumpFileSilentStructCAP
)
get()
(in
RandomSolutionsAP
)
get_cstyle_b_individual_scale()
(in
PcsDataLanthanide
)
get()
(in
ScoreJumpFileSilentStructCreatorAP
)
get()
(in
RandomSolutionsCAP
)
get_Cter_loop_end()
(in
AnchoredGraftMover
)
get()
(in
ScoreJumpFileSilentStructCreatorCAP
)
get()
(in
SolutionPickerAP
)
get_cterm_insert_flexibility()
(in
AnchoredGraftMover
)
get()
(in
SharedSilentDataAP
)
get()
(in
SolutionPickerCAP
)
get_cterm_scaffold_flexibility()
(in
AnchoredGraftMover
)
get()
(in
SharedSilentDataCAP
)
get()
(in
BruteFunGroupTKAP
)
get_cterminal_peptide_bond_reference_frame()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
SilentEnergyAP
)
get()
(in
BruteFunGroupTKCAP
)
get_cterminal_peptide_bond_reference_frame_atomids()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
SilentEnergyCAP
)
get()
(in
FunGroupTKAP
)
get_cube()
(in
Octree2D
)
get()
(in
SilentFileDataAP
)
get()
(in
FunGroupTKCAP
)
get_cur_ncluster()
(in
KClusterElement
)
get()
(in
SilentFileDataCAP
)
get()
(in
KRSQueryAP
)
get_curr_state_energy_following_partial_state_assignment()
(in
FASTEREdge
)
get()
(in
SilentFileLoaderAP
)
get()
(in
KRSQueryCAP
)
get_curr_state_recent_state_id()
(in
LinearMemNode
)
get()
(in
SilentFileLoaderCAP
)
get()
(in
KinFunGroupTKAP
)
get_curr_state_recent_state_id()
(in
SymmLinearMemNode
)
get()
(in
SilentFileLoaderCreatorAP
)
get()
(in
KinFunGroupTKCAP
)
get_current()
(in
SimpleNode
)
get()
(in
SilentFileLoaderCreatorCAP
)
get()
(in
AddHydrogenAP
)
get_current_AntibodyNumberingScheme()
(in
AntibodyInfo
)
get()
(in
SilentFileOptionsAP
)
get()
(in
AddHydrogenCAP
)
get_current_batch()
(in
JobDistributor
)
get()
(in
SilentFileOptionsCAP
)
get()
(in
AddHydrogensAP
)
get_current_bs_id_and_closest_edge_bs_id_in_different_sheet()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
SilentFileOptionsCreatorAP
)
get()
(in
AddHydrogensCAP
)
get_current_CDRDefinition()
(in
AntibodyInfo
)
get()
(in
SilentFileOptionsCreatorCAP
)
get()
(in
AddHydrogensCreatorAP
)
get_current_confnum()
(in
DockingEnsemble
)
get()
(in
SilentStructAP
)
get()
(in
AddHydrogensCreatorCAP
)
get_current_cycle()
(in
TrajectoryMapFeatures
)
get()
(in
SilentStructCAP
)
get()
(in
AtomCountFilterAP
)
get_current_energy()
(in
SimpleEdge
)
get()
(in
SilentStructCreatorAP
)
get()
(in
AtomCountFilterCAP
)
get_current_eqxyz()
(in
CartesianMD
)
get()
(in
SilentStructCreatorCAP
)
get()
(in
AtomCountFilterCreatorAP
)
get_current_job()
(in
rosetta.protocols.jd2._protocols_jd2_
)
get()
(in
SilentStructFactoryAP
)
get()
(in
AtomCountFilterCreatorCAP
)
get_current_job()
(in
Mover
)
get()
(in
SilentStructFactoryCAP
)
get()
(in
ChainExistsFilterAP
)
get_current_jobs_starting_pose()
(in
rosetta.protocols.jd2._protocols_jd2_
)
get()
(in
SimpleSequenceDataAP
)
get()
(in
ChainExistsFilterCAP
)
get_current_jump()
(in
SymmetrySlider
)
get()
(in
SimpleSequenceDataCAP
)
get()
(in
ChainExistsFilterCreatorAP
)
get_current_network_state()
(in
FASTERInteractionGraph
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
ChainExistsFilterCreatorCAP
)
get_current_output_tag()
(in
BaseJobDistributor
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
CompleteConnectionsFilterAP
)
get_current_output_tag()
(in
PlainSilentFileJobDistributor
)
get()
(in
SingletonBase_T_core_io_silent_SilentStructFactory_TAP
)
get()
(in
CompleteConnectionsFilterCAP
)
get_current_state()
(in
DensePDNode
)
get()
(in
SingletonBase_T_core_io_silent_SilentStructFactory_TCAP
)
get()
(in
CompleteConnectionsFilterCreatorAP
)
get_current_state()
(in
DoubleDensePDNode
)
get()
(in
AtomTreeAP
)
get()
(in
CompleteConnectionsFilterCreatorCAP
)
get_current_state()
(in
DoubleLazyNode
)
get()
(in
AtomTreeCAP
)
get()
(in
CompoundTranslateAP
)
get_current_state()
(in
FASTERNode
)
get()
(in
AtomWithDOFChangeAP
)
get()
(in
CompoundTranslateCAP
)
get_current_state()
(in
LazyNode
)
get()
(in
AtomWithDOFChangeCAP
)
get()
(in
CompoundTranslateCreatorAP
)
get_current_state()
(in
LinearMemNode
)
get()
(in
EXCN_InvalidFoldTreeAP
)
get()
(in
CompoundTranslateCreatorCAP
)
get_current_state()
(in
PDNode
)
get()
(in
EXCN_InvalidFoldTreeCAP
)
get()
(in
ComputeLigandRDFAP
)
get_current_state()
(in
SymmLinearMemNode
)
get()
(in
EdgeAP
)
get()
(in
ComputeLigandRDFCAP
)
get_current_state()
(in
SymmMinimalistNode
)
get()
(in
EdgeCAP
)
get()
(in
ComputeLigandRDFCreatorAP
)
get_current_state()
(in
FlexbbNode
)
get()
(in
FoldTreeAP
)
get()
(in
ComputeLigandRDFCreatorCAP
)
get_current_state_for_node()
(in
FASTERInteractionGraph
)
get()
(in
FoldTreeCAP
)
get()
(in
DistributionMapAP
)
get_current_strands_in_sheet()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
JumpAP
)
get()
(in
DistributionMapCAP
)
get_current_structure_count()
(in
rosetta.protocols.features._protocols_features_
)
get()
(in
JumpCAP
)
get()
(in
FinalMinimizerAP
)
get_current_tag()
(in
Mover
)
get()
(in
MinimizerMapBaseAP
)
get()
(in
FinalMinimizerCAP
)
get_current_two_body_energy()
(in
DensePDEdge
)
get()
(in
MinimizerMapBaseCAP
)
get()
(in
FinalMinimizerCreatorAP
)
get_current_two_body_energy()
(in
DoubleDensePDEdge
)
get()
(in
MoveMap
)
get()
(in
FinalMinimizerCreatorCAP
)
get_current_two_body_energy()
(in
DoubleLazyEdge
)
get()
(in
MoveMapAP
)
get()
(in
GrowLigandAP
)
get_current_two_body_energy()
(in
FASTEREdge
)
get()
(in
MoveMapCAP
)
get()
(in
GrowLigandCAP
)
get_current_two_body_energy()
(in
LazyEdge
)
get()
(in
RTAP
)
get()
(in
GrowLigandCreatorAP
)
get_current_two_body_energy()
(in
LinearMemEdge
)
get()
(in
RTCAP
)
get()
(in
GrowLigandCreatorCAP
)
get_current_two_body_energy()
(in
PDEdge
)
get()
(in
ResidueCoordinateChangeListAP
)
get()
(in
HBondAcceptorFilterAP
)
get_current_two_body_energy()
(in
SymmLinearMemEdge
)
get()
(in
ResidueCoordinateChangeListCAP
)
get()
(in
HBondAcceptorFilterCAP
)
get_current_two_body_energy()
(in
SymmMinimalistEdge
)
get()
(in
ShortestPathInFoldTreeAP
)
get()
(in
HBondAcceptorFilterCreatorAP
)
get_cutoff()
(in
SidechainContactDistCutoff
)
get()
(in
ShortestPathInFoldTreeCAP
)
get()
(in
HBondAcceptorFilterCreatorCAP
)
get_cutoff_squared()
(in
SidechainContactDistCutoff
)
get()
(in
StubAP
)
get()
(in
HBondDonorFilterAP
)
get_cutpoint_closed()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
get()
(in
StubCAP
)
get()
(in
HBondDonorFilterCAP
)
get_cutpoints()
(in
SeedFoldTree
)
get()
(in
AtomAP
)
get()
(in
HBondDonorFilterCreatorAP
)
get_cycle_counts()
(in
TrajectoryReportToDB
)
get()
(in
AtomCAP
)
get()
(in
HBondDonorFilterCreatorCAP
)
get_D_equivalent()
(in
rosetta.core.chemical._core_chemical_
)
get()
(in
Atom_AP
)
get()
(in
HeavyAtomFilterAP
)
get_data()
(in
ResPairMinimizationData
)
get()
(in
Atom_CAP
)
get()
(in
HeavyAtomFilterCAP
)
get_data()
(in
ResSingleMinimizationData
)
get()
(in
BondedAtomAP
)
get()
(in
HeavyAtomFilterCreatorAP
)
get_data()
(in
MutateFrameworkForCluster
)
get()
(in
BondedAtomCAP
)
get()
(in
HeavyAtomFilterCreatorCAP
)
get_data()
(in
JCouplingIO
)
get()
(in
JumpAtomAP
)
get()
(in
HighResDockerAP
)
get_data_ndx()
(in
KClusterElement
)
get()
(in
JumpAtomCAP
)
get()
(in
HighResDockerCAP
)
get_data_ref()
(in
ResPairMinimizationData
)
get()
(in
ArmijoLineMinimizationAP
)
get()
(in
HighResDockerCreatorAP
)
get_data_ref()
(in
ResSingleMinimizationData
)
get()
(in
ArmijoLineMinimizationCAP
)
get()
(in
HighResDockerCreatorCAP
)
get_data_score()
(in
RNA_FilteredBaseBaseInfo
)
get()
(in
AtomTreeMinimizerAP
)
get()
(in
InterfaceBuilderAP
)
get_database()
(in
HBondDatabase
)
get()
(in
AtomTreeMinimizerCAP
)
get()
(in
InterfaceBuilderCAP
)
get_database_name()
(in
DatabaseJobInputter
)
get()
(in
AtomTreeMultifuncAP
)
get()
(in
InterfaceBuilderLoaderAP
)
get_database_name()
(in
DatabaseJobOutputter
)
get()
(in
AtomTreeMultifuncCAP
)
get()
(in
InterfaceBuilderLoaderCAP
)
get_database_pq_schema()
(in
DatabaseJobInputter
)
get()
(in
BrentLineMinimizationAP
)
get()
(in
InterfaceBuilderLoaderCreatorAP
)
get_database_pq_schema()
(in
DatabaseJobOutputter
)
get()
(in
BrentLineMinimizationCAP
)
get()
(in
InterfaceBuilderLoaderCreatorCAP
)
get_DatabaseOccSolEne()
(in
ScoringManager
)
get()
(in
CartesianMinimizerAP
)
get()
(in
InterfaceScoreCalculatorAP
)
get_DB_filter_ptr()
(in
rosetta.protocols.features._protocols_features_
)
get()
(in
CartesianMinimizerCAP
)
get()
(in
InterfaceScoreCalculatorCAP
)
get_db_session()
(in
rosetta.basic.database._basic_database_
)
get()
(in
CartesianMinimizerMapAP
)
get()
(in
InterfaceScoreCalculatorCreatorAP
)
get_DC_data()
(in
DipolarCoupling
)
get()
(in
CartesianMinimizerMapCAP
)
get()
(in
InterfaceScoreCalculatorCreatorCAP
)
get_DC_data_type()
(in
DC
)
get()
(in
CartesianMultifuncAP
)
get()
(in
LigandAreaAP
)
get_DDPLookupTable()
(in
ScoringManager
)
get()
(in
CartesianMultifuncCAP
)
get()
(in
LigandAreaCAP
)
get_debug()
(in
AnchoredPerturbMover
)
get()
(in
ConvergenceTestAP
)
get()
(in
LigandAreaLoaderAP
)
get_debug()
(in
AnchoredRefineMover
)
get()
(in
ConvergenceTestCAP
)
get()
(in
LigandAreaLoaderCAP
)
get_debug_rmsd()
(in
PDBSilentStruct
)
get()
(in
DFPMinConvergedAbsoluteAP
)
get()
(in
LigandAreaLoaderCreatorAP
)
get_debug_rmsd()
(in
DecoyStruct
)
get()
(in
DFPMinConvergedAbsoluteCAP
)
get()
(in
LigandAreaLoaderCreatorCAP
)
get_debug_rmsd()
(in
RawStruct
)
get()
(in
DFPMinConvergedFractionalAP
)
get()
(in
LigandBaseProtocolAP
)
get_debug_rmsd()
(in
ScoreStructJSON
)
get()
(in
DFPMinConvergedFractionalCAP
)
get()
(in
LigandBaseProtocolCAP
)
get_debug_rmsd()
(in
ScoreStructText
)
get()
(in
DOF_DataPointAP
)
get()
(in
LigandDesignAP
)
get_debug_rmsd()
(in
BinarySilentStruct
)
get()
(in
DOF_DataPointCAP
)
get()
(in
LigandDesignCAP
)
get_debug_rmsd()
(in
RNA_SilentStruct
)
get()
(in
DOF_NodeAP
)
get()
(in
LigandDesignCreatorAP
)
get_debug_rmsd()
(in
RigidBodySilentStruct
)
get()
(in
DOF_NodeCAP
)
get()
(in
LigandDesignCreatorCAP
)
get_debug_rmsd()
(in
ScoreFileSilentStruct
)
get()
(in
DerivCheckDataPointAP
)
get()
(in
LigandDockProtocolAP
)
get_debug_rmsd()
(in
ScoreJumpFileSilentStruct
)
get()
(in
DerivCheckDataPointCAP
)
get()
(in
LigandDockProtocolCAP
)
get_debug_rmsd()
(in
SilentStruct
)
get()
(in
DescentDirectionAlgorithmAP
)
get()
(in
Ligand_infoAP
)
get_delete_interface_native_sidechains()
(in
AnchoredDesignMover
)
get()
(in
DescentDirectionAlgorithmCAP
)
get()
(in
Ligand_infoCAP
)
get_DELPHI_espGrid_values()
(in
ElectrostaticpotentialGrid
)
get()
(in
EItemAP
)
get()
(in
MinimizeBackboneAP
)
get_delta()
(in
CubicSpline
)
get()
(in
EItemCAP
)
get()
(in
MinimizeBackboneCAP
)
get_delta_energy_components()
(in
ddGMover
)
get()
(in
GA_MinimizerAP
)
get()
(in
MinimizeBackboneCreatorAP
)
get_delta_magnetic_anisotropy_deriv()
(in
rosetta.core.scoring.rna.chemical_shift._core_scoring_rna_chemical_shift_
)
get()
(in
GA_MinimizerCAP
)
get()
(in
MinimizeBackboneCreatorCAP
)
get_delta_X_xx()
(in
PcsTensor
)
get()
(in
JJH_MinimizerAP
)
get()
(in
MinimizeLigandAP
)
get_delta_X_yy()
(in
PcsTensor
)
get()
(in
JJH_MinimizerCAP
)
get()
(in
MinimizeLigandCAP
)
get_delta_X_zz()
(in
PcsTensor
)
get()
(in
LineMinimizationAlgorithmAP
)
get()
(in
MolarMassFilterAP
)
get_deltaE_for_neighbor_following_perturbation()
(in
FASTEREdge
)
get()
(in
LineMinimizationAlgorithmCAP
)
get()
(in
MolarMassFilterCAP
)
get_deltaE_for_perturbation()
(in
FASTEREdge
)
get()
(in
MinimizerAP
)
get()
(in
MolarMassFilterCreatorAP
)
get_deltaE_for_relaxed_state_following_perturbation()
(in
FASTERNode
)
get()
(in
MinimizerCAP
)
get()
(in
MolarMassFilterCreatorCAP
)
get_density_map()
(in
rosetta.core.scoring.electron_density_atomwise._core_scoring_electron_density_atomwise_
)
get()
(in
MinimizerMapAP
)
get()
(in
MolecularMassFilterAP
)
get_density_sc_scale_byres()
(in
EnergyMethodOptions
)
get()
(in
MinimizerMapCAP
)
get()
(in
MolecularMassFilterCAP
)
get_deriv()
(in
RNA_SuitePotential
)
get()
(in
MinimizerOptionsAP
)
get()
(in
MolecularMassFilterCreatorAP
)
get_deriv()
(in
PolycubicSpline
)
get()
(in
MinimizerOptionsCAP
)
get()
(in
MolecularMassFilterCreatorCAP
)
get_deriv_count()
(in
func_1d
)
get()
(in
MultifuncAP
)
get()
(in
MoveMapBuilderAP
)
get_descriptor()
(in
ElectronConfiguration
)
get()
(in
MultifuncCAP
)
get()
(in
MoveMapBuilderCAP
)
get_designable_residues()
(in
EnzdesSeqRecoveryCache
)
get()
(in
NelderMeadSimplexAP
)
get()
(in
MoveMapBuilderLoaderAP
)
get_designable_residues()
(in
DesignAroundOperation
)
get()
(in
NelderMeadSimplexCAP
)
get()
(in
MoveMapBuilderLoaderCAP
)
get_deviation()
(in
rosetta.protocols.loops.loop_closure.ccd._protocols_loops_loop_closure_ccd_
)
get()
(in
NumDerivCheckDataAP
)
get()
(in
MoveMapBuilderLoaderCreatorAP
)
get_DFIRE_potential()
(in
rosetta.core.scoring.methods.dfire._core_scoring_methods_dfire_
)
get()
(in
NumDerivCheckDataCAP
)
get()
(in
MoveMapBuilderLoaderCreatorCAP
)
get_DirectReadoutPotential()
(in
ScoringManager
)
get()
(in
NumericalDerivCheckResultAP
)
get()
(in
RandomConformerMoverAP
)
get_disabled()
(in
CheckPointer
)
get()
(in
NumericalDerivCheckResultCAP
)
get()
(in
RandomConformerMoverCAP
)
get_dist()
(in
UnionEdge
)
get()
(in
ParticleAP
)
get()
(in
RandomConformersAP
)
get_dist_bins()
(in
PDDFEnergy
)
get()
(in
ParticleCAP
)
get()
(in
RandomConformersCAP
)
get_dist_err()
(in
RNA_LoopCloser
)
get()
(in
ParticleSwarmMinimizerAP
)
get()
(in
RandomConformersCreatorAP
)
get_distance()
(in
ClosureSolution
)
get()
(in
ParticleSwarmMinimizerCAP
)
get()
(in
RandomConformersCreatorCAP
)
get_distance()
(in
KClusterElement
)
get()
(in
SimpleDerivCheckResultAP
)
get()
(in
ResidueTorsionRestraintsAP
)
get_distance_cutoff()
(in
RestrictToNeighborhoodOperation
)
get()
(in
SimpleDerivCheckResultCAP
)
get()
(in
ResidueTorsionRestraintsCAP
)
get_distance_measure()
(in
AssignToClustersMover
)
get()
(in
SingleResidueMultifuncAP
)
get()
(in
RigidSearchMoverAP
)
get_distance_measure()
(in
ClusterBase
)
get()
(in
SingleResidueMultifuncCAP
)
get()
(in
RigidSearchMoverCAP
)
get_distance_measure()
(in
ClusterPhilStyle
)
get()
(in
StrongWolfeLineMinimizationAP
)
get()
(in
RotateAP
)
get_distance_measure()
(in
ClusterPhilStyle_Loop
)
get()
(in
StrongWolfeLineMinimizationCAP
)
get()
(in
RotateCAP
)
get_distance_measure()
(in
ClusterPhilStyle_PoseReporter
)
get()
(in
func_1dAP
)
get()
(in
RotateCreatorAP
)
get_distance_measure()
(in
EnsembleConstraints
)
get()
(in
func_1dCAP
)
get()
(in
RotateCreatorCAP
)
get_distance_measure()
(in
EnsembleConstraints_Simple
)
get()
(in
lbfgs_iteration_dataAP
)
get()
(in
Rotate_infoAP
)
get_distance_measure()
(in
GatherPosesMover
)
get()
(in
lbfgs_iteration_dataCAP
)
get()
(in
Rotate_infoCAP
)
get_distinct_sheet_id_from_sheet_table()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
SymAtomTreeMinimizerAP
)
get()
(in
RotatesAP
)
get_distinct_sw_id_from_sandwich_table()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
SymAtomTreeMinimizerCAP
)
get()
(in
RotatesCAP
)
get_distribution()
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
get()
(in
SymAtomTreeMultifuncAP
)
get()
(in
RotatesCreatorAP
)
get_disulfide_derivatives()
(in
FullatomDisulfidePotential
)
get()
(in
SymAtomTreeMultifuncCAP
)
get()
(in
RotatesCreatorCAP
)
get_disulfide_derivatives_old()
(in
FullatomDisulfidePotential
)
get()
(in
SymMinimizerMapAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_DisulfideMatchingPotential()
(in
ScoringManager
)
get()
(in
SymMinimizerMapCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_DNA_BasePotential()
(in
ScoringManager
)
get()
(in
RTMinAP
)
get()
(in
SlideTogetherAP
)
get_DNABFormPotential()
(in
ScoringManager
)
get()
(in
RTMinCAP
)
get()
(in
SlideTogetherCAP
)
get_DNATorsionPotential()
(in
ScoringManager
)
get()
(in
AnnealerFactoryAP
)
get()
(in
SlideTogetherCreatorAP
)
get_dock_chains_from_ab_dock_chains()
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
get()
(in
AnnealerFactoryCAP
)
get()
(in
SlideTogetherCreatorCAP
)
get_DOF()
(in
TorsionDOFMover
)
get()
(in
DebuggingAnnealerAP
)
get()
(in
StartFromAP
)
get_dof_axis_and_end_pos()
(in
Atom
)
get()
(in
DebuggingAnnealerCAP
)
get()
(in
StartFromCAP
)
get_dof_axis_and_end_pos()
(in
BondedAtom
)
get()
(in
FASTERAnnealerAP
)
get()
(in
StartFromCreatorAP
)
get_dof_axis_and_end_pos()
(in
JumpAtom
)
get()
(in
FASTERAnnealerCAP
)
get()
(in
StartFromCreatorCAP
)
get_dof_derivative_weight()
(in
SymmetryInfo
)
get()
(in
FixbbCoupledRotamerSimAnnealerAP
)
get()
(in
TetherLigandAP
)
get_dof_id()
(in
CartesianMinimizerMap
)
get()
(in
FixbbCoupledRotamerSimAnnealerCAP
)
get()
(in
TetherLigandCAP
)
get_dofs()
(in
SymmData
)
get()
(in
FixbbLinkingRotamerSimAnnealerAP
)
get()
(in
TransformAP
)
get_dofs()
(in
SymmetryInfo
)
get()
(in
FixbbLinkingRotamerSimAnnealerCAP
)
get()
(in
TransformCAP
)
get_dofs_from_energy_map()
(in
OptEMultifunc
)
get()
(in
FixbbSimAnnealerAP
)
get()
(in
TransformCreatorAP
)
get_domain()
(in
AllowInsert
)
get()
(in
FixbbSimAnnealerCAP
)
get()
(in
TransformCreatorCAP
)
get_domain_boundary_res()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
get()
(in
MultiCoolAnnealerAP
)
get()
(in
Transform_infoAP
)
get_domain_boundary_suites()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
get()
(in
MultiCoolAnnealerCAP
)
get()
(in
Transform_infoCAP
)
get_dot_covered()
(in
DotSphere
)
get()
(in
RotSubAP
)
get()
(in
TranslateAP
)
get_ds_atom_ids_needed()
(in
TargetRotamerCoords
)
get()
(in
RotSubCAP
)
get()
(in
TranslateCAP
)
get_dsbuilder()
(in
DownstreamAlgorithm
)
get()
(in
RotamerAssigningAnnealerAP
)
get()
(in
TranslateCreatorAP
)
get_dsecox()
(in
BicubicSpline
)
get()
(in
RotamerAssigningAnnealerCAP
)
get()
(in
TranslateCreatorCAP
)
get_dsecox()
(in
CubicSpline
)
get()
(in
SimAnnealerBaseAP
)
get()
(in
Translate_infoAP
)
get_dsecox()
(in
TricubicSpline
)
get()
(in
SimAnnealerBaseCAP
)
get()
(in
Translate_infoCAP
)
get_dsecoxy()
(in
BicubicSpline
)
get()
(in
BBDepNRChiSample_T_double_TAP
)
get()
(in
UnconstrainedTorsionsMoverAP
)
get_dsecoxy()
(in
TricubicSpline
)
get()
(in
BBDepNRChiSample_T_double_TCAP
)
get()
(in
UnconstrainedTorsionsMoverCAP
)
get_dsecoxyz()
(in
TricubicSpline
)
get()
(in
BBDepNRChiSample_T_float_TAP
)
get()
(in
WriteLigandMolFileAP
)
get_dsecoxz()
(in
TricubicSpline
)
get()
(in
BBDepNRChiSample_T_float_TCAP
)
get()
(in
WriteLigandMolFileCAP
)
get_dsecoy()
(in
BicubicSpline
)
get()
(in
BBIndNRChiSample_T_float_TAP
)
get()
(in
WriteLigandMolFileCreatorAP
)
get_dsecoy()
(in
TricubicSpline
)
get()
(in
BBIndNRChiSample_T_float_TCAP
)
get()
(in
WriteLigandMolFileCreatorCAP
)
get_dsecoyz()
(in
TricubicSpline
)
get()
(in
ChiSetAP
)
get()
(in
InterfaceAP
)
get_dsecoz()
(in
TricubicSpline
)
get()
(in
ChiSetCAP
)
get()
(in
InterfaceCAP
)
get_dssp_reduced_IG_as_L_secstruct()
(in
Dssp
)
get()
(in
DunbrackConstraintAP
)
get()
(in
InterfaceInfoAP
)
get_dssp_secstruct()
(in
Dssp
)
get()
(in
DunbrackConstraintCAP
)
get()
(in
InterfaceInfoCAP
)
get_dw_dr()
(in
FAElecContextData
)
get()
(in
DunbrackConstraintCreatorAP
)
get()
(in
AtomPairDataAP
)
get_dynamic_scale()
(in
NormalModeRelaxMover
)
get()
(in
DunbrackConstraintCreatorCAP
)
get()
(in
AtomPairDataCAP
)
get_E_haro_one_way()
(in
OrbitalsScore
)
get()
(in
DunbrackEnergyAP
)
get()
(in
RDFBaseAP
)
get_E_hpol_one_way()
(in
OrbitalsScore
)
get()
(in
DunbrackEnergyCAP
)
get()
(in
RDFBaseCAP
)
get_edge()
(in
UpperEdgeGraph_T_core_conformation_PointGraphVertexData_core_conformation_PointGraphEdgeData_T
)
get()
(in
DunbrackEnergyCreatorAP
)
get()
(in
RDFBinaryHbondCreatorAP
)
get_edge()
(in
InteractionGraphBase
)
get()
(in
DunbrackEnergyCreatorCAP
)
get()
(in
RDFBinaryHbondCreatorCAP
)
get_edge_exists()
(in
Graph
)
get()
(in
DunbrackRotamerSampleDataAP
)
get()
(in
RDFBinaryHbondFunctionAP
)
get_edge_exists()
(in
InteractionGraphBase
)
get()
(in
DunbrackRotamerSampleDataCAP
)
get()
(in
RDFBinaryHbondFunctionCAP
)
get_edge_from_num()
(in
rosetta.core.chemical.rna._core_chemical_rna_
)
get()
(in
ProbSortClassAP
)
get()
(in
RDFBinaryOrbitalFunctionAP
)
get_edge_list_begin()
(in
InteractionGraphBase
)
get()
(in
ProbSortClassCAP
)
get()
(in
RDFBinaryOrbitalFunctionCAP
)
get_edge_list_end()
(in
InteractionGraphBase
)
get()
(in
RotamerBuildingDataAP
)
get()
(in
RDFBinaryOrbitalFunctionCreatorAP
)
get_edge_memory_usage()
(in
DensePDInteractionGraph
)
get()
(in
RotamerBuildingDataCAP
)
get()
(in
RDFBinaryOrbitalFunctionCreatorCAP
)
get_edge_memory_usage()
(in
DoubleDensePDInteractionGraph
)
get()
(in
RotamerConstraintAP
)
get()
(in
RDFChargeCreatorAP
)
get_edge_memory_usage()
(in
DoubleLazyInteractionGraph
)
get()
(in
RotamerConstraintCAP
)
get()
(in
RDFChargeCreatorCAP
)
get_edge_memory_usage()
(in
FASTERInteractionGraph
)
get()
(in
RotamerLibraryAP
)
get()
(in
RDFChargeFunctionAP
)
get_edge_memory_usage()
(in
InteractionGraphBase
)
get()
(in
RotamerLibraryCAP
)
get()
(in
RDFChargeFunctionCAP
)
get_edge_memory_usage()
(in
LazyInteractionGraph
)
get()
(in
RotamerLibraryScratchSpaceAP
)
get()
(in
RDFElecCreatorAP
)
get_edge_memory_usage()
(in
LinearMemoryInteractionGraph
)
get()
(in
RotamerLibraryScratchSpaceCAP
)
get()
(in
RDFElecCreatorCAP
)
get_edge_memory_usage()
(in
PDInteractionGraph
)
get()
(in
SingleLigandRotamerLibraryAP
)
get()
(in
RDFElecFunctionAP
)
get_edge_memory_usage()
(in
SymmLinearMemoryInteractionGraph
)
get()
(in
SingleLigandRotamerLibraryCAP
)
get()
(in
RDFElecFunctionCAP
)
get_edge_memory_usage()
(in
SymmMinimalistInteractionGraph
)
get()
(in
SingleResidueDunbrackLibraryAP
)
get()
(in
RDFEtableCreatorAP
)
get_edge_memory_usage()
(in
MinimalistFlexbbInteractionGraph
)
get()
(in
SingleResidueDunbrackLibraryCAP
)
get()
(in
RDFEtableCreatorCAP
)
get_edge_reweight()
(in
IGEdgeReweighter
)
get()
(in
SingleResiduePeptoidLibraryAP
)
get()
(in
RDFEtableFunctionAP
)
get_edge_reweight()
(in
IGLigandDesignEdgeUpweighter
)
get()
(in
SingleResiduePeptoidLibraryCAP
)
get()
(in
RDFEtableFunctionCAP
)
get_edge_reweight()
(in
ResidueGroupIGEdgeUpweighter
)
get()
(in
SingleResidueRotamerLibraryAP
)
get()
(in
RDFFunctionCreatorAP
)
get_edge_table_ptr()
(in
DensePDEdge
)
get()
(in
SingleResidueRotamerLibraryCAP
)
get()
(in
RDFFunctionCreatorCAP
)
get_edge_table_ptr()
(in
FASTEREdge
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
RDFFunctionFactoryAP
)
get_edge_table_ptr()
(in
LazyEdge
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
RDFFunctionFactoryCAP
)
get_edge_table_ptr()
(in
PDEdge
)
get()
(in
SingletonBase_T_core_pack_dunbrack_RotamerLibrary_TAP
)
get()
(in
RDFHbondCreatorAP
)
get_edge_weight()
(in
InteractionGraphBase
)
get()
(in
SingletonBase_T_core_pack_dunbrack_RotamerLibrary_TCAP
)
get()
(in
RDFHbondCreatorCAP
)
get_eggshell_distance()
(in
EggshellGrid
)
get()
(in
CenRotDunEnergyAP
)
get()
(in
RDFHbondFunctionAP
)
get_eigval()
(in
NormalMode
)
get()
(in
CenRotDunEnergyCAP
)
get()
(in
RDFHbondFunctionCAP
)
get_eigvec_cart()
(in
NormalMode
)
get()
(in
CenRotDunEnergyCreatorAP
)
get()
(in
RDFOrbitalFunctionAP
)
get_eigvec_tor()
(in
NormalMode
)
get()
(in
CenRotDunEnergyCreatorCAP
)
get()
(in
RDFOrbitalFunctionCAP
)
get_electron_affinity()
(in
GasteigerAtomTypeData
)
get()
(in
CentroidRotamerSampleDataAP
)
get()
(in
RDFOrbitalFunctionCreatorAP
)
get_electron_configuration()
(in
Element
)
get()
(in
CentroidRotamerSampleDataCAP
)
get()
(in
RDFOrbitalFunctionCreatorCAP
)
get_electronegativity()
(in
GasteigerAtomTypeData
)
get()
(in
SingleResidueCenrotLibraryAP
)
get()
(in
LoopBuildMoverAP
)
get_electrostatics_energy()
(in
NonPlaidFingerprint
)
get()
(in
SingleResidueCenrotLibraryCAP
)
get()
(in
LoopBuildMoverCAP
)
get_element_type()
(in
GasteigerAtomTypeData
)
get()
(in
SingletonBase_T_core_pack_dunbrack_RotamerLibrary_TAP
)
get()
(in
LoopMover_SlidingWindowAP
)
get_end()
(in
SandwichFragment
)
get()
(in
SingletonBase_T_core_pack_dunbrack_RotamerLibrary_TCAP
)
get()
(in
LoopMover_SlidingWindowCAP
)
get_end()
(in
StrandFragment
)
get()
(in
AminoAcidNeighborSparseMatrix_T_float_T
)
get()
(in
LoopMover_SlidingWindowCreatorAP
)
get_end_res()
(in
ReturnSidechainMover
)
get()
(in
AminoAcidNeighborSparseMatrix_T_float_TAP
)
get()
(in
LoopMover_SlidingWindowCreatorCAP
)
GET_ENERGIES
(in
rosetta.basic
)
get()
(in
AminoAcidNeighborSparseMatrix_T_float_TCAP
)
get()
(in
LoopmodelWrapperAP
)
GET_ENERGIES
(in
rosetta.basic._basic_
)
get()
(in
DensePDEdgeAP
)
get()
(in
LoopmodelWrapperCAP
)
GET_ENERGIES
(in
ProfTag
)
get()
(in
DensePDEdgeCAP
)
get()
(in
LoopmodelWrapperCreatorAP
)
get_energy()
(in
SilentStruct
)
get()
(in
DensePDInteractionGraphAP
)
get()
(in
LoopmodelWrapperCreatorCAP
)
get_energy()
(in
RotData
)
get()
(in
DensePDInteractionGraphCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_energy_current_state_assignment()
(in
DensePDInteractionGraph
)
get()
(in
DensePDNodeAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_energy_current_state_assignment()
(in
DoubleDensePDInteractionGraph
)
get()
(in
DensePDNodeCAP
)
get()
(in
LoopBuilderAP
)
get_energy_current_state_assignment()
(in
DoubleLazyInteractionGraph
)
get()
(in
DotSphereAP
)
get()
(in
LoopBuilderCAP
)
get_energy_current_state_assignment()
(in
FASTERInteractionGraph
)
get()
(in
DotSphereCAP
)
get()
(in
LoopBuilderCreatorAP
)
get_energy_current_state_assignment()
(in
InteractionGraphBase
)
get()
(in
DoubleDensePDEdgeAP
)
get()
(in
LoopBuilderCreatorCAP
)
get_energy_current_state_assignment()
(in
LazyInteractionGraph
)
get()
(in
DoubleDensePDEdgeCAP
)
get()
(in
LoopModelerAP
)
get_energy_current_state_assignment()
(in
LinearMemoryInteractionGraph
)
get()
(in
DoubleDensePDInteractionGraphAP
)
get()
(in
LoopModelerCAP
)
get_energy_current_state_assignment()
(in
PDInteractionGraph
)
get()
(in
DoubleDensePDInteractionGraphCAP
)
get()
(in
LoopModelerCreatorAP
)
get_energy_current_state_assignment()
(in
SymmLinearMemoryInteractionGraph
)
get()
(in
DoubleDensePDNodeAP
)
get()
(in
LoopModelerCreatorCAP
)
get_energy_current_state_assignment()
(in
SymmMinimalistInteractionGraph
)
get()
(in
DoubleDensePDNodeCAP
)
get()
(in
LoopMoverAP
)
get_energy_current_state_assignment()
(in
MinimalistFlexbbInteractionGraph
)
get()
(in
DoubleLazyEdgeAP
)
get()
(in
LoopMoverCAP
)
get_energy_following_partial_state_assignment()
(in
DoubleLazyEdge
)
get()
(in
DoubleLazyEdgeCAP
)
get()
(in
LoopProtocolAP
)
get_energy_following_partial_state_assignment()
(in
LazyEdge
)
get()
(in
DoubleLazyInteractionGraphAP
)
get()
(in
LoopProtocolCAP
)
get_energy_following_partial_state_assignment()
(in
LinearMemEdge
)
get()
(in
DoubleLazyInteractionGraphCAP
)
get()
(in
LoopProtocolCreatorAP
)
get_energy_following_partial_state_assignment()
(in
SymmLinearMemEdge
)
get()
(in
DoubleLazyNodeAP
)
get()
(in
LoopProtocolCreatorCAP
)
get_energy_following_partial_state_assignment()
(in
SymmMinimalistEdge
)
get()
(in
DoubleLazyNodeCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_energy_following_relaxation()
(in
FASTERInteractionGraph
)
get()
(in
EdgeBaseAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_energy_for_alt_state()
(in
LinearMemEdge
)
get()
(in
EdgeBaseCAP
)
get()
(in
ToolboxKeysAP
)
get_energy_for_alt_state()
(in
SymmLinearMemEdge
)
get()
(in
FASTEREdgeAP
)
get()
(in
ToolboxKeysCAP
)
get_energy_for_alt_state()
(in
SymmMinimalistEdge
)
get()
(in
FASTEREdgeCAP
)
get()
(in
MinimizationRefinerAP
)
get_energy_for_perturbed_state()
(in
FASTEREdge
)
get()
(in
FASTERInteractionGraphAP
)
get()
(in
MinimizationRefinerCAP
)
get_energy_map_from_dofs()
(in
OptEMultifunc
)
get()
(in
FASTERInteractionGraphCAP
)
get()
(in
MinimizationRefinerCreatorAP
)
get_energy_node()
(in
EnergyGraph
)
get()
(in
FASTERNodeAP
)
get()
(in
MinimizationRefinerCreatorCAP
)
get_energy_state()
(in
PBLifetimeCache
)
get()
(in
FASTERNodeCAP
)
get()
(in
RepackingRefinerAP
)
get_energy_sum_for_vertex_group()
(in
DensePDInteractionGraph
)
get()
(in
FixedBBEdgeAP
)
get()
(in
RepackingRefinerCAP
)
get_energy_sum_for_vertex_group()
(in
DoubleDensePDInteractionGraph
)
get()
(in
FixedBBEdgeCAP
)
get()
(in
RepackingRefinerCreatorAP
)
get_energy_sum_for_vertex_group()
(in
DoubleLazyInteractionGraph
)
get()
(in
FixedBBInteractionGraphAP
)
get()
(in
RepackingRefinerCreatorCAP
)
get_energy_sum_for_vertex_group()
(in
FASTERInteractionGraph
)
get()
(in
FixedBBInteractionGraphCAP
)
get()
(in
RotamerTrialsRefinerAP
)
get_energy_sum_for_vertex_group()
(in
InteractionGraphBase
)
get()
(in
FixedBBNodeAP
)
get()
(in
RotamerTrialsRefinerCAP
)
get_energy_sum_for_vertex_group()
(in
LazyInteractionGraph
)
get()
(in
FixedBBNodeCAP
)
get()
(in
RotamerTrialsRefinerCreatorAP
)
get_energy_sum_for_vertex_group()
(in
LinearMemoryInteractionGraph
)
get()
(in
HPatchEnergyAP
)
get()
(in
RotamerTrialsRefinerCreatorCAP
)
get_energy_sum_for_vertex_group()
(in
PDInteractionGraph
)
get()
(in
HPatchEnergyCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_energy_sum_for_vertex_group()
(in
SymmLinearMemoryInteractionGraph
)
get()
(in
HPatchEnergyCreatorAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_energy_sum_for_vertex_group()
(in
SymmMinimalistInteractionGraph
)
get()
(in
HPatchEnergyCreatorCAP
)
get()
(in
LegacyKicSamplerAP
)
get_energy_sum_for_vertex_group()
(in
MinimalistFlexbbInteractionGraph
)
get()
(in
InteractionGraphBaseAP
)
get()
(in
LegacyKicSamplerCAP
)
get_enforce_bb_contiguity()
(in
FlexbbInteractionGraph
)
get()
(in
InteractionGraphBaseCAP
)
get()
(in
LegacyKicSamplerCreatorAP
)
get_ensemble_ca_rmsd()
(in
ShakeStructureMover
)
get()
(in
InteractionGraphFactoryAP
)
get()
(in
LegacyKicSamplerCreatorCAP
)
get_ensemble_diversity()
(in
ShakeStructureMover
)
get()
(in
InteractionGraphFactoryCAP
)
get()
(in
AcceptanceCheckAP
)
get_entries()
(in
CSTalosIO
)
get()
(in
InvRotamerDotsAP
)
get()
(in
AcceptanceCheckCAP
)
get_entries_per_torsion_bin()
(in
Ramachandran
)
get()
(in
InvRotamerDotsCAP
)
get()
(in
LoopFilterAP
)
get_entries_per_torsion_bin_left()
(in
Ramachandran2B
)
get()
(in
LazyEdgeAP
)
get()
(in
LoopFilterCAP
)
get_entries_per_torsion_bin_right()
(in
Ramachandran2B
)
get()
(in
LazyEdgeCAP
)
get()
(in
LoopMoverGroupAP
)
get_entry()
(in
PhiPsiTalosIO
)
get()
(in
LazyInteractionGraphAP
)
get()
(in
LoopMoverGroupCAP
)
get_environment_dependent_weight()
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
get()
(in
LazyInteractionGraphCAP
)
get()
(in
PrepareForCentroidAP
)
get_EnvPairPotential()
(in
ScoringManager
)
get()
(in
LazyNodeAP
)
get()
(in
PrepareForCentroidCAP
)
get_enzdes_observer()
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
get()
(in
LazyNodeCAP
)
get()
(in
PrepareForCentroidCreatorAP
)
get_epitope_residues()
(in
ParatopeEpitopeSiteConstraintMover
)
get()
(in
LinearMemEdgeAP
)
get()
(in
PrepareForCentroidCreatorCAP
)
get_eps()
(in
MakeRotLibJob
)
get()
(in
LinearMemEdgeCAP
)
get()
(in
PrepareForFullatomAP
)
get_eps()
(in
RotData
)
get()
(in
LinearMemNodeAP
)
get()
(in
PrepareForFullatomCAP
)
get_eps_range()
(in
MakeRotLibOptionsData
)
get()
(in
LinearMemNodeCAP
)
get()
(in
PrepareForFullatomCreatorAP
)
get_epsilon_torsions()
(in
rosetta.core.chemical.rna._core_chemical_rna_
)
get()
(in
LinearMemoryInteractionGraphAP
)
get()
(in
PrepareForFullatomCreatorCAP
)
get_equiv()
(in
RotamerLinks
)
get()
(in
LinearMemoryInteractionGraphCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_equiv()
(in
NCSResMapping
)
get()
(in
NodeBaseAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_euler_angles()
(in
rosetta.protocols.toolbox.rigid_body._protocols_toolbox_rigid_body_
)
get()
(in
NodeBaseCAP
)
get()
(in
BBDataAP
)
get_eval_count()
(in
func_1d
)
get()
(in
OnTheFlyEdgeAP
)
get()
(in
BBDataCAP
)
get_exemplar_for()
(in
APCluster
)
get()
(in
OnTheFlyEdgeCAP
)
get()
(in
BBExtraDataAP
)
get_exp_val()
(in
SplineFunc
)
get()
(in
OnTheFlyInteractionGraphAP
)
get()
(in
BBExtraDataCAP
)
get_extra()
(in
LoopHashLibrary
)
get()
(in
OnTheFlyInteractionGraphCAP
)
get()
(in
BackboneDBAP
)
get_extra_data()
(in
BackboneDB
)
get()
(in
OnTheFlyNodeAP
)
get()
(in
BackboneDBCAP
)
get_f2c()
(in
ElectronDensity
)
get()
(in
OnTheFlyNodeCAP
)
get()
(in
BackboneSegmentAP
)
get_fa_score()
(in
JSON_RPC
)
get()
(in
PDEdgeAP
)
get()
(in
BackboneSegmentCAP
)
get_fa_scorefxn()
(in
rosetta.protocols.loops._protocols_loops_
)
get()
(in
PDEdgeCAP
)
get()
(in
EXCN_DB_IO_FailedAP
)
get_FACTSPotential()
(in
ScoringManager
)
get()
(in
PDInteractionGraphAP
)
get()
(in
EXCN_DB_IO_FailedCAP
)
get_fade_correction()
(in
rosetta.core.scoring.rna._core_scoring_rna_
)
get()
(in
PDInteractionGraphCAP
)
get()
(in
EXCN_Invalid_HashmapAP
)
get_features_reporter()
(in
FeaturesReporterFactory
)
get()
(in
PDNodeAP
)
get()
(in
EXCN_Invalid_HashmapCAP
)
get_ff()
(in
FormFactorManager
)
get()
(in
PDNodeCAP
)
get()
(in
EXCN_No_Extra_Data_To_WriteAP
)
get_file_name()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
get()
(in
PrecomputedPairEnergiesEdgeAP
)
get()
(in
EXCN_No_Extra_Data_To_WriteCAP
)
get_file_option()
(in
rosetta.basic._basic_
)
get()
(in
PrecomputedPairEnergiesEdgeCAP
)
get()
(in
EXCN_Wrong_DB_FormatAP
)
get_file_option()
(in
rosetta.basic.options._basic_options_
)
get()
(in
PrecomputedPairEnergiesInteractionGraphAP
)
get()
(in
EXCN_Wrong_DB_FormatCAP
)
get_file_vector_option()
(in
rosetta.basic._basic_
)
get()
(in
PrecomputedPairEnergiesInteractionGraphCAP
)
get()
(in
EXCN_bbdb_Merge_FailedAP
)
get_file_vector_option()
(in
rosetta.basic.options._basic_options_
)
get()
(in
PrecomputedPairEnergiesNodeAP
)
get()
(in
EXCN_bbdb_Merge_FailedCAP
)
get_filename()
(in
SplineFunc
)
get()
(in
PrecomputedPairEnergiesNodeCAP
)
get()
(in
FastGapMoverAP
)
get_filename()
(in
Anchor
)
get()
(in
RotamerDotsAP
)
get()
(in
FastGapMoverCAP
)
get_filename()
(in
PCS_data_per_lanthanides
)
get()
(in
RotamerDotsCAP
)
get()
(in
LeapIndexAP
)
get_filename()
(in
PCS_file_data
)
get()
(in
RotamerDotsCacheAP
)
get()
(in
LeapIndexCAP
)
get_filename()
(in
PcsDataLanthanide
)
get()
(in
RotamerDotsCacheCAP
)
get()
(in
LegacyLeapIndexAP
)
get_filename()
(in
PcsInputFile
)
get()
(in
RotamerDotsRadiusDataAP
)
get()
(in
LegacyLeapIndexCAP
)
get_filename()
(in
PCS_data_per_lanthanides_Ts1
)
get()
(in
RotamerDotsRadiusDataCAP
)
get()
(in
LocalInserterAP
)
get_filename()
(in
PCS_file_data_Ts1
)
get()
(in
SimpleEdgeAP
)
get()
(in
LocalInserterCAP
)
get_filename()
(in
PCS_data_per_lanthanides_Ts2
)
get()
(in
SimpleEdgeCAP
)
get()
(in
LocalInserter_SimpleMinAP
)
get_filename()
(in
PCS_file_data_Ts2
)
get()
(in
SimpleInteractionGraphAP
)
get()
(in
LocalInserter_SimpleMinCAP
)
get_filename()
(in
PCS_data_per_lanthanides_Ts3
)
get()
(in
SimpleInteractionGraphCAP
)
get()
(in
LoopHashDiversifierAP
)
get_filename()
(in
PCS_file_data_Ts3
)
get()
(in
SimpleNodeAP
)
get()
(in
LoopHashDiversifierCAP
)
get_filename()
(in
PCS_data_per_lanthanides_Ts4
)
get()
(in
SimpleNodeCAP
)
get()
(in
LoopHashDiversifierCreatorAP
)
get_filename()
(in
PCS_file_data_Ts4
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
LoopHashDiversifierCreatorCAP
)
get_filenames()
(in
PDBPoseInputStream
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
LoopHashLibraryAP
)
get_filenames()
(in
rosetta.protocols.motifs._protocols_motifs_
)
get()
(in
SingletonBase_T_core_pack_interaction_graph_RotamerDotsRadiusData_TAP
)
get()
(in
LoopHashLibraryCAP
)
get_filter()
(in
GatherPosesMover
)
get()
(in
SingletonBase_T_core_pack_interaction_graph_RotamerDotsRadiusData_TCAP
)
get()
(in
LoopHashLibraryLoaderAP
)
get_filter()
(in
FilterCollection
)
get()
(in
SingletonBase_T_core_pack_interaction_graph_SurfacePotential_TAP
)
get()
(in
LoopHashLibraryLoaderCAP
)
get_filter()
(in
FilterReporterMover
)
get()
(in
SingletonBase_T_core_pack_interaction_graph_SurfacePotential_TCAP
)
get()
(in
LoopHashLibraryLoaderCreatorAP
)
get_filter_by_phipsi()
(in
LoopHashSampler
)
get()
(in
SparseMatrixIndexAP
)
get()
(in
LoopHashLibraryLoaderCreatorCAP
)
get_filter_omega()
(in
AnchoredDesignMover
)
get()
(in
SparseMatrixIndexCAP
)
get()
(in
LoopHashLibraryOptionsAP
)
get_filter_param()
(in
GeneralizedKICfilter
)
get()
(in
SurfaceEnergyAP
)
get()
(in
LoopHashLibraryOptionsCAP
)
get_filter_SASA()
(in
AnchoredDesignMover
)
get()
(in
SurfaceEnergyCAP
)
get()
(in
LoopHashLibraryOptionsCreatorAP
)
get_filter_score()
(in
AnchoredDesignMover
)
get()
(in
SurfaceEnergyCreatorAP
)
get()
(in
LoopHashLibraryOptionsCreatorCAP
)
get_filter_type_by_name()
(in
GeneralizedKICfilter
)
get()
(in
SurfaceEnergyCreatorCAP
)
get()
(in
LoopHashMapAP
)
get_filter_type_name()
(in
GeneralizedKICfilter
)
get()
(in
SurfacePotentialAP
)
get()
(in
LoopHashMapCAP
)
get_final_energy()
(in
VIP_Mover
)
get()
(in
SurfacePotentialCAP
)
get()
(in
LoopHashMoverWrapperAP
)
get_final_pose()
(in
VIP_Mover
)
get()
(in
SymmLinearMemEdgeAP
)
get()
(in
LoopHashMoverWrapperCAP
)
get_final_rot_probs()
(in
rosetta.protocols.make_rot_lib._protocols_make_rot_lib_
)
get()
(in
SymmLinearMemEdgeCAP
)
get()
(in
LoopHashMoverWrapperCreatorAP
)
get_final_rots()
(in
rosetta.protocols.make_rot_lib._protocols_make_rot_lib_
)
get()
(in
SymmLinearMemNodeAP
)
get()
(in
LoopHashMoverWrapperCreatorCAP
)
get_first()
(in
trace
)
get()
(in
SymmLinearMemNodeCAP
)
get()
(in
LoopHashRelaxProtocolAP
)
get_first_atom()
(in
AtomPairConstraintsData
)
get()
(in
SymmLinearMemoryInteractionGraphAP
)
get()
(in
LoopHashRelaxProtocolCAP
)
get_first_atom()
(in
FourAtomsConstraintData
)
get()
(in
SymmLinearMemoryInteractionGraphCAP
)
get()
(in
LoopHashSamplerAP
)
get_first_index_in_query()
(in
FragmentCandidate
)
get()
(in
SymmMinimalistEdgeAP
)
get()
(in
LoopHashSamplerCAP
)
get_first_index_in_vall()
(in
FragmentCandidate
)
get()
(in
SymmMinimalistEdgeCAP
)
get()
(in
MPI_LoopHashRefineAP
)
get_first_node_ind()
(in
Edge
)
get()
(in
SymmMinimalistInteractionGraphAP
)
get()
(in
MPI_LoopHashRefineCAP
)
get_first_node_ind()
(in
EdgeBase
)
get()
(in
SymmMinimalistInteractionGraphCAP
)
get()
(in
MPI_LoopHashRefine_EmperorAP
)
get_first_protein_residue()
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
get()
(in
SymmMinimalistNodeAP
)
get()
(in
MPI_LoopHashRefine_EmperorCAP
)
get_first_residue_id()
(in
CSTalosIO
)
get()
(in
SymmMinimalistNodeCAP
)
get()
(in
MPI_LoopHashRefine_MasterAP
)
get_first_residue_id()
(in
PhiPsiTalosIO
)
get()
(in
SymmOnTheFlyEdgeAP
)
get()
(in
MPI_LoopHashRefine_MasterCAP
)
get_fix_backbone()
(in
CoupledMover
)
get()
(in
SymmOnTheFlyEdgeCAP
)
get()
(in
Mover_LoopHashRefineAP
)
get_fixed_chains()
(in
InterfaceAnalyzerMover
)
get()
(in
SymmOnTheFlyInteractionGraphAP
)
get()
(in
Mover_LoopHashRefineCAP
)
get_fixed_domain_from_full_model_info_const()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
get()
(in
SymmOnTheFlyInteractionGraphCAP
)
get()
(in
WorkUnit_LoopHashAP
)
get_fixed_pt()
(in
InvrotTreeNode
)
get()
(in
SymmOnTheFlyNodeAP
)
get()
(in
WorkUnit_LoopHashCAP
)
get_flags()
(in
PoseSelector
)
get()
(in
SymmOnTheFlyNodeCAP
)
get()
(in
EXCN_Loop_not_closedAP
)
get_flexseg_bb_offset()
(in
FlexbbInteractionGraph
)
get()
(in
exposed_hydrophobic_dataAP
)
get()
(in
EXCN_Loop_not_closedCAP
)
get_flexseg_for_bb()
(in
FlexbbInteractionGraph
)
get()
(in
exposed_hydrophobic_dataCAP
)
get()
(in
FoldTreeFromLoopsAP
)
get_fmax()
(in
FadeInterval
)
get()
(in
history_queue_structAP
)
get()
(in
FoldTreeFromLoopsCAP
)
get_fmin()
(in
FadeInterval
)
get()
(in
history_queue_structCAP
)
get()
(in
FoldTreeFromLoopsCreatorAP
)
get_fobj()
(in
MultiObjective
)
get()
(in
AddResiduesRotamerSetOperationAP
)
get()
(in
FoldTreeFromLoopsCreatorCAP
)
get_fold_tree()
(in
FoldandDockClaimer
)
get()
(in
AddResiduesRotamerSetOperationCAP
)
get()
(in
GuardedLoopsFromFileAP
)
get_fold_tree()
(in
MembraneTopologyClaimer
)
get()
(in
BumpSelectorAP
)
get()
(in
GuardedLoopsFromFileCAP
)
get_fold_tree()
(in
TopologyClaimer
)
get()
(in
BumpSelectorCAP
)
get()
(in
JSONFormattedLoopsFileReaderAP
)
get_fold_tree_root()
(in
SetTorsion
)
get()
(in
ContinuousRotamerSetAP
)
get()
(in
JSONFormattedLoopsFileReaderCAP
)
get_folding_verteces()
(in
SeedFoldTree
)
get()
(in
ContinuousRotamerSetCAP
)
get()
(in
LoopAP
)
get_FoldTree_AllCDRs()
(in
AntibodyInfo
)
get()
(in
ContinuousRotamerSetsAP
)
get()
(in
LoopCAP
)
get_FoldTree_AllCDRs_LHDock()
(in
AntibodyInfo
)
get()
(in
ContinuousRotamerSetsCAP
)
get()
(in
LoopFromFileDataAP
)
get_FoldTree_L_HA()
(in
AntibodyInfo
)
get()
(in
FixbbRotamerSetsAP
)
get()
(in
LoopFromFileDataCAP
)
get_FoldTree_LA_H()
(in
AntibodyInfo
)
get()
(in
FixbbRotamerSetsCAP
)
get()
(in
LoopMoverFactoryAP
)
get_FoldTree_LH_A()
(in
AntibodyInfo
)
get()
(in
RotamerCouplingsAP
)
get()
(in
LoopMoverFactoryCAP
)
get_foldtree_seqsep()
(in
rosetta.protocols.fldsgn.potentials.sspot._protocols_fldsgn_potentials_sspot_
)
get()
(in
RotamerCouplingsCAP
)
get()
(in
Loop_ltAP
)
get_formal_charge()
(in
GasteigerAtomTypeData
)
get()
(in
RotamerLinksAP
)
get()
(in
Loop_ltCAP
)
get_fourth_atom()
(in
FourAtomsConstraintData
)
get()
(in
RotamerLinksCAP
)
get()
(in
LoopsAP
)
get_fourth_offset()
(in
FourAtomsConstraintData
)
get()
(in
RotamerOperationAP
)
get()
(in
LoopsCAP
)
get_fraction()
(in
QuotaConfig
)
get()
(in
RotamerOperationCAP
)
get()
(in
LoopsFileDataAP
)
get_fraction()
(in
QuotaPool
)
get()
(in
RotamerSetAP
)
get()
(in
LoopsFileDataCAP
)
get_frag3()
(in
AnchorMoversData
)
get()
(in
RotamerSetCAP
)
get()
(in
LoopsFileFallbackConfigurationAP
)
get_frag_data()
(in
FragmentCandidate
)
get()
(in
RotamerSetFactoryAP
)
get()
(in
LoopsFileFallbackConfigurationCAP
)
get_frag_energy_for_alt_bb_state()
(in
MinimalistFlexbbNode
)
get()
(in
RotamerSetFactoryCAP
)
get()
(in
LoopsFileFallbackConfigurationCreatorAP
)
get_frag_energy_for_curr_bb_state_and_finalize_alt_energy_total()
(in
MinimalistFlexbbNode
)
get()
(in
RotamerSetOperationAP
)
get()
(in
LoopsFileFallbackConfigurationCreatorCAP
)
get_frag_factory()
(in
FragmentIO
)
get()
(in
RotamerSetOperationCAP
)
get()
(in
LoopsFileIOAP
)
get_fragment_store()
(in
BinaryFragmentStoreBackend
)
get()
(in
RotamerSet_AP
)
get()
(in
LoopsFileIOCAP
)
get_fragment_torsion()
(in
FragmentLibrary
)
get()
(in
RotamerSet_CAP
)
get()
(in
LoopsFileLoaderAP
)
get_fragment_torsion_set()
(in
FragmentLibrary
)
get()
(in
RotamerSetsAP
)
get()
(in
LoopsFileLoaderCAP
)
get_fragments_by_CA_distances_and_NCpoints_restrains()
(in
MotifGraftMover
)
get()
(in
RotamerSetsBaseAP
)
get()
(in
LoopsFileLoaderCreatorAP
)
get_frags()
(in
AnchorMoversData
)
get()
(in
RotamerSetsBaseCAP
)
get()
(in
LoopsFileLoaderCreatorCAP
)
get_frags()
(in
RMSVallData
)
get()
(in
RotamerSetsCAP
)
get()
(in
LoopsFileOptionsAP
)
get_frags()
(in
VallData
)
get()
(in
RotamerSubsetAP
)
get()
(in
LoopsFileOptionsCAP
)
get_frags()
(in
rosetta.protocols.frags._protocols_frags_
)
get()
(in
RotamerSubsetCAP
)
get()
(in
LoopsFileOptionsCreatorAP
)
get_frame_ala()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
RotamerSubsetsAP
)
get()
(in
LoopsFileOptionsCreatorCAP
)
get_frame_arg()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
RotamerSubsetsCAP
)
get()
(in
PoseNumberedLoopFileReaderAP
)
get_frame_asn()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
PoseNumberedLoopFileReaderCAP
)
get_frame_asp()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
RationalLoopComparatorAP
)
get_frame_cys()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
UnboundRotamersOperationAP
)
get()
(in
RationalLoopComparatorCAP
)
get_frame_gln()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
UnboundRotamersOperationCAP
)
get()
(in
ResidueIndexDescriptionAP
)
get_frame_glu()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
WaterAnchorInfoAP
)
get()
(in
ResidueIndexDescriptionCAP
)
get_frame_gly()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
WaterAnchorInfoCAP
)
get()
(in
ResidueIndexDescriptionFromFileAP
)
get_frame_his()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
WaterPackingInfoAP
)
get()
(in
ResidueIndexDescriptionFromFileCAP
)
get_frame_ile()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
WaterPackingInfoCAP
)
get()
(in
SerializedLoopAP
)
get_frame_leu()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
SymmetricRotamerSetFactoryAP
)
get()
(in
SerializedLoopCAP
)
get_frame_lys()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
SymmetricRotamerSetFactoryCAP
)
get()
(in
SingletonBase_T_protocols_loops_LoopMoverFactory_TAP
)
get_frame_met()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
SymmetricRotamerSet_AP
)
get()
(in
SingletonBase_T_protocols_loops_LoopMoverFactory_TCAP
)
get_frame_phe()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
SymmetricRotamerSet_CAP
)
get()
(in
CCDLoopClosureMoverAP
)
get_frame_pro()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
SymmetricRotamerSetsAP
)
get()
(in
CCDLoopClosureMoverCAP
)
get_frame_ser()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
SymmetricRotamerSetsCAP
)
get()
(in
CCDLoopClosureMoverCreatorAP
)
get_frame_thr()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
AtomTreeCollectionAP
)
get()
(in
CCDLoopClosureMoverCreatorCAP
)
get_frame_trp()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
AtomTreeCollectionCAP
)
get()
(in
FASelectSlidingWindowLoopClosureAP
)
get_frame_tyr()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
CartSCMinMultifuncAP
)
get()
(in
FASelectSlidingWindowLoopClosureCAP
)
get_frame_val()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
CartSCMinMultifuncCAP
)
get()
(in
LoopClosureAP
)
get_fstyle_b()
(in
PCS_data_per_lanthanides
)
get()
(in
ResidueAtomTreeCollectionMomentoAP
)
get()
(in
LoopClosureCAP
)
get_fstyle_b()
(in
PCS_data_per_lanthanides_Ts1
)
get()
(in
ResidueAtomTreeCollectionMomentoCAP
)
get()
(in
RamaCheck1BAP
)
get_fstyle_b()
(in
PCS_data_per_lanthanides_Ts2
)
get()
(in
ALLAAAP
)
get()
(in
RamaCheck1BCAP
)
get_fstyle_b()
(in
PCS_data_per_lanthanides_Ts3
)
get()
(in
ALLAACAP
)
get()
(in
RamaCheck2BAP
)
get_fstyle_b()
(in
PCS_data_per_lanthanides_Ts4
)
get()
(in
ALLAAwcAP
)
get()
(in
RamaCheck2BCAP
)
get_full_edge_from_num()
(in
rosetta.core.chemical.rna._core_chemical_rna_
)
get()
(in
ALLAAwcCAP
)
get()
(in
RamaCheckBaseAP
)
get_full_intracomponent_and_neighbor_resis()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
ALLAAxcAP
)
get()
(in
RamaCheckBaseCAP
)
get_full_intracomponent_and_neighbor_subpose()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
ALLAAxcCAP
)
get()
(in
ShortLoopClosureAP
)
get_full_intracomponent_and_neighbor_subs()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
APOLAAP
)
get()
(in
ShortLoopClosureCAP
)
get_full_intracomponent_neighbor_resis()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
APOLACAP
)
get()
(in
SlidingWindowLoopClosureAP
)
get_full_intracomponent_neighbor_subpose()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
APOLARAP
)
get()
(in
SlidingWindowLoopClosureCAP
)
get_full_intracomponent_neighbor_subs()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
APOLARCAP
)
get()
(in
WidthFirstSlidingWindowLoopClosureAP
)
get_full_intracomponent_resis()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
AUTOAP
)
get()
(in
WidthFirstSlidingWindowLoopClosureCAP
)
get_full_intracomponent_subpose()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
AUTOCAP
)
get()
(in
BaseTabooPerturberAP
)
get_full_intracomponent_subs()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
EMPTYAP
)
get()
(in
BaseTabooPerturberCAP
)
get_full_LW_orientation_from_num()
(in
rosetta.core.chemical.rna._core_chemical_rna_
)
get()
(in
EMPTYCAP
)
get()
(in
KinematicMoverAP
)
get_full_motif_bb_alignment_mode()
(in
MotifMatch
)
get()
(in
EXAP
)
get()
(in
KinematicMoverCAP
)
get_full_orientation_from_num()
(in
rosetta.core.chemical.rna._core_chemical_rna_
)
get()
(in
EXCAP
)
get()
(in
KinematicPerturberAP
)
get_full_strands()
(in
StrandBundleFeatures
)
get()
(in
EX_CUTOFFAP
)
get()
(in
KinematicPerturberCAP
)
get_full_strands()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
EX_CUTOFFCAP
)
get()
(in
KinematicWrapperAP
)
get_full_strands_from_sheet()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
FIX_HIS_TAUTOMERAP
)
get()
(in
KinematicWrapperCAP
)
get_full_torsions()
(in
rosetta.core.chemical.rna._core_chemical_rna_
)
get()
(in
FIX_HIS_TAUTOMERCAP
)
get()
(in
NeighborDependentTabooSamplingKinematicPerturberAP
)
get_fullatom_scorefunction()
(in
AnchorMoversData
)
get()
(in
IGEdgeReweightContainerAP
)
get()
(in
NeighborDependentTabooSamplingKinematicPerturberCAP
)
get_FullatomDisulfidePotential()
(in
ScoringManager
)
get()
(in
IGEdgeReweightContainerCAP
)
get()
(in
NeighborDependentTorsionSamplingKinematicPerturberAP
)
get_func()
(in
DunbrackConstraint
)
get()
(in
IGEdgeReweighterAP
)
get()
(in
NeighborDependentTorsionSamplingKinematicPerturberCAP
)
get_func()
(in
RotamerConstraint
)
get()
(in
IGEdgeReweighterCAP
)
get()
(in
TabooSamplingKinematicPerturberAP
)
get_func()
(in
AmbiguousConstraint
)
get()
(in
NATAAAP
)
get()
(in
TabooSamplingKinematicPerturberCAP
)
get_func()
(in
AmbiguousNMRConstraint
)
get()
(in
NATAACAP
)
get()
(in
TorsionRestrictedKinematicPerturberAP
)
get_func()
(in
AmbiguousNMRDistanceConstraint
)
get()
(in
NATROAP
)
get()
(in
TorsionRestrictedKinematicPerturberCAP
)
get_func()
(in
AngleConstraint
)
get()
(in
NATROCAP
)
get()
(in
TorsionSamplingKinematicPerturberAP
)
get_func()
(in
AtomPairConstraint
)
get()
(in
NCAP
)
get()
(in
TorsionSamplingKinematicPerturberCAP
)
get_func()
(in
BackboneStubConstraint
)
get()
(in
NCCAP
)
get()
(in
TorsionSweepingKinematicPerturberAP
)
get_func()
(in
BackboneStubLinearConstraint
)
get()
(in
NOTAAAP
)
get()
(in
TorsionSweepingKinematicPerturberCAP
)
get_func()
(in
BigBinConstraint
)
get()
(in
NOTAACAP
)
get()
(in
VicinitySamplingKinematicPerturberAP
)
get_func()
(in
ConstantConstraint
)
get()
(in
NO_ADDUCTSAP
)
get()
(in
VicinitySamplingKinematicPerturberCAP
)
get_func()
(in
Constraint
)
get()
(in
NO_ADDUCTSCAP
)
get()
(in
IndependentLoopMoverAP
)
get_func()
(in
CoordinateConstraint
)
get()
(in
PIKAAAP
)
get()
(in
IndependentLoopMoverCAP
)
get_func()
(in
DihedralConstraint
)
get()
(in
PIKAACAP
)
get()
(in
LoopCMAP
)
get_func()
(in
DihedralPairConstraint
)
get()
(in
PIKNAAP
)
get()
(in
LoopCMCAP
)
get_func()
(in
DistancePairConstraint
)
get()
(in
PIKNACAP
)
get()
(in
LoopCMCreatorAP
)
get_func()
(in
FabConstraint
)
get()
(in
PIKRNAAP
)
get()
(in
LoopCMCreatorCAP
)
get_func()
(in
KofNConstraint
)
get()
(in
PIKRNACAP
)
get()
(in
LoopMoverAP
)
get_func()
(in
LocalCoordinateConstraint
)
get()
(in
POLARAP
)
get()
(in
LoopMoverCAP
)
get_func()
(in
MultiConstraint
)
get()
(in
POLARCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_func()
(in
NamedAngleConstraint
)
get()
(in
PackerTaskAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_func()
(in
NamedAtomPairConstraint
)
get()
(in
PackerTaskCAP
)
get()
(in
LoopMover_Perturb_CCDAP
)
get_func()
(in
NonResidueTypeConstraint
)
get()
(in
PackerTask_AP
)
get()
(in
LoopMover_Perturb_CCDCAP
)
get_func()
(in
ResidueTypeConstraint
)
get()
(in
PackerTask_CAP
)
get()
(in
LoopMover_Perturb_CCDCreatorAP
)
get_func()
(in
ResidueTypeLinkingConstraint
)
get()
(in
RESETAP
)
get()
(in
LoopMover_Perturb_CCDCreatorCAP
)
get_func()
(in
SequenceProfileConstraint
)
get()
(in
RESETCAP
)
get()
(in
LoopMover_Perturb_KICAP
)
get_func()
(in
SiteConstraint
)
get()
(in
ResfileCommandAP
)
get()
(in
LoopMover_Perturb_KICCAP
)
get_func()
(in
SiteConstraintResidues
)
get()
(in
ResfileCommandCAP
)
get()
(in
LoopMover_Perturb_KICCreatorAP
)
get_func()
(in
AmbiguousMultiConstraint
)
get()
(in
ResfileContentsAP
)
get()
(in
LoopMover_Perturb_KICCreatorCAP
)
get_func()
(in
BindingSiteConstraint
)
get()
(in
ResfileContentsCAP
)
get()
(in
LoopMover_Perturb_QuickCCDAP
)
get_func()
(in
COMCoordinateConstraint
)
get()
(in
ResfileReaderExceptionAP
)
get()
(in
LoopMover_Perturb_QuickCCDCAP
)
get_func()
(in
SequenceCoupling1BDConstraint
)
get()
(in
ResfileReaderExceptionCAP
)
get()
(in
LoopMover_Perturb_QuickCCDCreatorAP
)
get_func()
(in
SequenceCouplingConstraint
)
get()
(in
ResidueLevelTaskAP
)
get()
(in
LoopMover_Perturb_QuickCCDCreatorCAP
)
get_func()
(in
PocketConstraint
)
get()
(in
ResidueLevelTaskCAP
)
get()
(in
LoopMover_Perturb_QuickCCD_MovesAP
)
get_func_factory()
(in
ConstraintIO
)
get()
(in
ResidueLevelTask_AP
)
get()
(in
LoopMover_Perturb_QuickCCD_MovesCAP
)
get_function()
(in
AtomPairConstraintsData
)
get()
(in
ResidueLevelTask_CAP
)
get()
(in
LoopMover_Perturb_QuickCCD_MovesCreatorAP
)
get_function()
(in
FourAtomsConstraintData
)
get()
(in
SCANAP
)
get()
(in
LoopMover_Perturb_QuickCCD_MovesCreatorCAP
)
get_function_names()
(in
RDFBase
)
get()
(in
SCANCAP
)
get()
(in
LoopMover_Refine_BackrubAP
)
get_G()
(in
BBGaussianMover
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
LoopMover_Refine_BackrubCAP
)
get_GDTHA()
(in
TMscore
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
LoopMover_Refine_BackrubCreatorAP
)
get_gdtmm()
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
get()
(in
TARGETAP
)
get()
(in
LoopMover_Refine_BackrubCreatorCAP
)
get_GDTTS()
(in
TMscore
)
get()
(in
TARGETCAP
)
get()
(in
LoopMover_Refine_CCDAP
)
get_GenBornPotential()
(in
ScoringManager
)
get()
(in
TaskFactoryAP
)
get()
(in
LoopMover_Refine_CCDCAP
)
get_global_coords_as_FArray2D()
(in
LigandConformer
)
get()
(in
TaskFactoryCAP
)
get()
(in
LoopMover_Refine_CCDCreatorAP
)
get_gly_interface_energy()
(in
InterfaceAnalyzerMover
)
get()
(in
USE_INPUT_SCAP
)
get()
(in
LoopMover_Refine_CCDCreatorCAP
)
get_glycosidic_bond_residues()
(in
rosetta.core.pose.carbohydrates._core_pose_carbohydrates_
)
get()
(in
USE_INPUT_SCCAP
)
get()
(in
LoopMover_Refine_KICAP
)
get_glycosidic_torsion()
(in
rosetta.core.pose.carbohydrates._core_pose_carbohydrates_
)
get()
(in
AddBehaviorRLTAP
)
get()
(in
LoopMover_Refine_KICCAP
)
get_GOE_packstat_report()
(in
VIP_Report
)
get()
(in
AddBehaviorRLTCAP
)
get()
(in
LoopMover_Refine_KICCreatorAP
)
get_GOE_relaxed_report()
(in
VIP_Report
)
get()
(in
AddBehaviorRLTCreatorAP
)
get()
(in
LoopMover_Refine_KICCreatorCAP
)
get_GOE_repack_report()
(in
VIP_Report
)
get()
(in
AddBehaviorRLTCreatorCAP
)
get()
(in
LoopRefineInnerCycleAP
)
get_graft_design_options()
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
get()
(in
AllResFilterAP
)
get()
(in
LoopRefineInnerCycleCAP
)
get_grid()
(in
ElectronDensity
)
get()
(in
AllResFilterCAP
)
get()
(in
LoopRefineInnerCycleContainerAP
)
get_grid_atom_name_1()
(in
PCS_Energy_parameters_manager
)
get()
(in
AllResFilterCreatorAP
)
get()
(in
LoopRefineInnerCycleContainerCAP
)
get_grid_atom_name_1()
(in
PCS_Energy_parameters_manager_Ts1
)
get()
(in
AllResFilterCreatorCAP
)
get()
(in
LoopRefineInnerCycleContainerCreatorAP
)
get_grid_atom_name_1()
(in
PCS_Energy_parameters_manager_Ts2
)
get()
(in
AnyResFilterAP
)
get()
(in
LoopRefineInnerCycleContainerCreatorCAP
)
get_grid_atom_name_1()
(in
PCS_Energy_parameters_manager_Ts3
)
get()
(in
AnyResFilterCAP
)
get()
(in
LoopRefineInnerCycleFactoryAP
)
get_grid_atom_name_1()
(in
PCS_Energy_parameters_manager_Ts4
)
get()
(in
AnyResFilterCreatorAP
)
get()
(in
LoopRefineInnerCycleFactoryCAP
)
get_grid_atom_name_2()
(in
PCS_Energy_parameters_manager
)
get()
(in
AnyResFilterCreatorCAP
)
get()
(in
RepackTrialAP
)
get_grid_atom_name_2()
(in
PCS_Energy_parameters_manager_Ts1
)
get()
(in
AppendResidueRotamerSetAP
)
get()
(in
RepackTrialCAP
)
get_grid_atom_name_2()
(in
PCS_Energy_parameters_manager_Ts2
)
get()
(in
AppendResidueRotamerSetCAP
)
get()
(in
RepackTrialCreatorAP
)
get_grid_atom_name_2()
(in
PCS_Energy_parameters_manager_Ts3
)
get()
(in
AppendResidueRotamerSetCreatorAP
)
get()
(in
RepackTrialCreatorCAP
)
get_grid_atom_name_2()
(in
PCS_Energy_parameters_manager_Ts4
)
get()
(in
AppendResidueRotamerSetCreatorCAP
)
get()
(in
ShearMinCCDTrialAP
)
get_grid_cone_angle_cutoff()
(in
PCS_Energy_parameters_manager
)
get()
(in
AppendRotamerAP
)
get()
(in
ShearMinCCDTrialCAP
)
get_grid_cone_angle_cutoff()
(in
PCS_Energy_parameters_manager_Ts1
)
get()
(in
AppendRotamerCAP
)
get()
(in
ShearMinCCDTrialCreatorAP
)
get_grid_cone_angle_cutoff()
(in
PCS_Energy_parameters_manager_Ts2
)
get()
(in
AppendRotamerCreatorAP
)
get()
(in
ShearMinCCDTrialCreatorCAP
)
get_grid_cone_angle_cutoff()
(in
PCS_Energy_parameters_manager_Ts3
)
get()
(in
AppendRotamerCreatorCAP
)
get()
(in
SingletonBase_T_protocols_loops_loop_mover_refine_LoopRefineInnerCycleFactory_TAP
)
get_grid_cone_angle_cutoff()
(in
PCS_Energy_parameters_manager_Ts4
)
get()
(in
AppendRotamerSetAP
)
get()
(in
SingletonBase_T_protocols_loops_loop_mover_refine_LoopRefineInnerCycleFactory_TCAP
)
get_grid_edge()
(in
PCS_Energy_parameters_manager
)
get()
(in
AppendRotamerSetCAP
)
get()
(in
SmallMinCCDTrialAP
)
get_grid_edge()
(in
PCS_Energy_parameters_manager_Ts1
)
get()
(in
AppendRotamerSetCreatorAP
)
get()
(in
SmallMinCCDTrialCAP
)
get_grid_edge()
(in
PCS_Energy_parameters_manager_Ts2
)
get()
(in
AppendRotamerSetCreatorCAP
)
get()
(in
SmallMinCCDTrialCreatorAP
)
get_grid_edge()
(in
PCS_Energy_parameters_manager_Ts3
)
get()
(in
ChainIsAP
)
get()
(in
SmallMinCCDTrialCreatorCAP
)
get_grid_edge()
(in
PCS_Energy_parameters_manager_Ts4
)
get()
(in
ChainIsCAP
)
get()
(in
LoopsDatabaseDefinerAP
)
get_grid_k_vector()
(in
PCS_Energy_parameters_manager
)
get()
(in
ChainIsCreatorAP
)
get()
(in
LoopsDatabaseDefinerCAP
)
get_grid_k_vector()
(in
PCS_Energy_parameters_manager_Ts1
)
get()
(in
ChainIsCreatorCAP
)
get()
(in
LoopsDatabaseDefinerCreatorAP
)
get_grid_k_vector()
(in
PCS_Energy_parameters_manager_Ts2
)
get()
(in
ChainIsntAP
)
get()
(in
LoopsDatabaseDefinerCreatorCAP
)
get_grid_k_vector()
(in
PCS_Energy_parameters_manager_Ts3
)
get()
(in
ChainIsntCAP
)
get()
(in
LoopsDefinerAP
)
get_grid_k_vector()
(in
PCS_Energy_parameters_manager_Ts4
)
get()
(in
ChainIsntCreatorAP
)
get()
(in
LoopsDefinerCAP
)
get_grid_large_cutoff()
(in
PCS_Energy_parameters_manager
)
get()
(in
ChainIsntCreatorCAP
)
get()
(in
LoopsDefinerCreatorAP
)
get_grid_large_cutoff()
(in
PCS_Energy_parameters_manager_Ts1
)
get()
(in
DisallowIfNonnativeAP
)
get()
(in
LoopsDefinerCreatorCAP
)
get_grid_large_cutoff()
(in
PCS_Energy_parameters_manager_Ts2
)
get()
(in
DisallowIfNonnativeCAP
)
get()
(in
LoopsDefinerFactoryAP
)
get_grid_large_cutoff()
(in
PCS_Energy_parameters_manager_Ts3
)
get()
(in
DisallowIfNonnativeCreatorAP
)
get()
(in
LoopsDefinerFactoryCAP
)
get_grid_large_cutoff()
(in
PCS_Energy_parameters_manager_Ts4
)
get()
(in
DisallowIfNonnativeCreatorCAP
)
get()
(in
LoopsDefinerLoaderAP
)
get_grid_residue_num_1()
(in
PCS_Energy_parameters_manager
)
get()
(in
DisallowIfNonnativeRLTAP
)
get()
(in
LoopsDefinerLoaderCAP
)
get_grid_residue_num_1()
(in
PCS_Energy_parameters_manager_Ts1
)
get()
(in
DisallowIfNonnativeRLTCAP
)
get()
(in
LoopsDefinerLoaderCreatorAP
)
get_grid_residue_num_1()
(in
PCS_Energy_parameters_manager_Ts2
)
get()
(in
DisallowIfNonnativeRLTCreatorAP
)
get()
(in
LoopsDefinerLoaderCreatorCAP
)
get_grid_residue_num_1()
(in
PCS_Energy_parameters_manager_Ts3
)
get()
(in
DisallowIfNonnativeRLTCreatorCAP
)
get()
(in
LoopsExplicitDefinerAP
)
get_grid_residue_num_1()
(in
PCS_Energy_parameters_manager_Ts4
)
get()
(in
ExtraChiCutoffAP
)
get()
(in
LoopsExplicitDefinerCAP
)
get_grid_residue_num_2()
(in
PCS_Energy_parameters_manager
)
get()
(in
ExtraChiCutoffCAP
)
get()
(in
LoopsExplicitDefinerCreatorAP
)
get_grid_residue_num_2()
(in
PCS_Energy_parameters_manager_Ts1
)
get()
(in
ExtraChiCutoffCreatorAP
)
get()
(in
LoopsExplicitDefinerCreatorCAP
)
get_grid_residue_num_2()
(in
PCS_Energy_parameters_manager_Ts2
)
get()
(in
ExtraChiCutoffCreatorCAP
)
get()
(in
LoopsFileDefinerAP
)
get_grid_residue_num_2()
(in
PCS_Energy_parameters_manager_Ts3
)
get()
(in
ExtraRotamersAP
)
get()
(in
LoopsFileDefinerCAP
)
get_grid_residue_num_2()
(in
PCS_Energy_parameters_manager_Ts4
)
get()
(in
ExtraRotamersCAP
)
get()
(in
LoopsFileDefinerCreatorAP
)
get_grid_search_parameters()
(in
PcsGridSearchParameterManager
)
get()
(in
ExtraRotamersCreatorAP
)
get()
(in
LoopsFileDefinerCreatorCAP
)
get_grid_small_cutoff()
(in
PCS_Energy_parameters_manager
)
get()
(in
ExtraRotamersCreatorCAP
)
get()
(in
SingletonBase_T_protocols_loops_loops_definers_LoopsDefinerFactory_TAP
)
get_grid_small_cutoff()
(in
PCS_Energy_parameters_manager_Ts1
)
get()
(in
ExtraRotamersGenericAP
)
get()
(in
SingletonBase_T_protocols_loops_loops_definers_LoopsDefinerFactory_TCAP
)
get_grid_small_cutoff()
(in
PCS_Energy_parameters_manager_Ts2
)
get()
(in
ExtraRotamersGenericCAP
)
get()
(in
CentroidRotNumAP
)
get_grid_small_cutoff()
(in
PCS_Energy_parameters_manager_Ts3
)
get()
(in
ExtraRotamersGenericCreatorAP
)
get()
(in
CentroidRotNumCAP
)
get_grid_small_cutoff()
(in
PCS_Energy_parameters_manager_Ts4
)
get()
(in
ExtraRotamersGenericCreatorCAP
)
get()
(in
MakeRotLibJobAP
)
get_grid_spacing()
(in
ElectronDensityOptions
)
get()
(in
IncludeCurrentAP
)
get()
(in
MakeRotLibJobCAP
)
get_grid_step()
(in
PCS_Energy_parameters_manager
)
get()
(in
IncludeCurrentCAP
)
get()
(in
MakeRotLibJobInputterAP
)
get_grid_step()
(in
PCS_Energy_parameters_manager_Ts1
)
get()
(in
IncludeCurrentCreatorAP
)
get()
(in
MakeRotLibJobInputterCAP
)
get_grid_step()
(in
PCS_Energy_parameters_manager_Ts2
)
get()
(in
IncludeCurrentCreatorCAP
)
get()
(in
MakeRotLibJobInputterCreatorAP
)
get_grid_step()
(in
PCS_Energy_parameters_manager_Ts3
)
get()
(in
InitializeExtraRotsFromCommandlineAP
)
get()
(in
MakeRotLibJobInputterCreatorCAP
)
get_grid_step()
(in
PCS_Energy_parameters_manager_Ts4
)
get()
(in
InitializeExtraRotsFromCommandlineCAP
)
get()
(in
MakeRotLibMoverAP
)
get_grow_attempts()
(in
IndependentLoopMover
)
get()
(in
InitializeExtraRotsFromCommandlineCreatorAP
)
get()
(in
MakeRotLibMoverCAP
)
get_H3_kink_type()
(in
AntibodyInfo
)
get()
(in
InitializeExtraRotsFromCommandlineCreatorCAP
)
get()
(in
MakeRotLibOptionsDataAP
)
get_H3_kink_type_name()
(in
AntibodyInfo
)
get()
(in
InitializeFromCommandlineAP
)
get()
(in
MakeRotLibOptionsDataCAP
)
get_HAdist()
(in
HBond
)
get()
(in
InitializeFromCommandlineCAP
)
get()
(in
RotDataAP
)
get_half_width()
(in
LinearPenaltyFunction
)
get()
(in
InitializeFromCommandlineCreatorAP
)
get()
(in
RotDataCAP
)
get_handedness_score_flag()
(in
SecondaryStructureWeights
)
get()
(in
InitializeFromCommandlineCreatorCAP
)
get()
(in
TorsionRangeAP
)
get_hardsphere_bump_check()
(in
KinematicMover
)
get()
(in
NoRepackDisulfidesAP
)
get()
(in
TorsionRangeCAP
)
get_harmonic_ca_cst_std_dev()
(in
ShakeStructureMover
)
get()
(in
NoRepackDisulfidesCAP
)
get()
(in
AddAllPositionsMPMAP
)
get_hash_excluding_chain()
(in
rosetta.core.pose._core_pose_
)
get()
(in
NoRepackDisulfidesCreatorAP
)
get()
(in
AddAllPositionsMPMCAP
)
get_hash_from_chain()
(in
rosetta.core.pose._core_pose_
)
get()
(in
NoRepackDisulfidesCreatorCAP
)
get()
(in
BfactorMPMAP
)
get_hb_acc_chem_type()
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
get()
(in
NoResFilterAP
)
get()
(in
BfactorMPMCAP
)
get_hb_don_chem_type()
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
get()
(in
NoResFilterCAP
)
get()
(in
Bool3DGridAP
)
get_hbe_acc_hybrid()
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
get()
(in
NoResFilterCreatorAP
)
get()
(in
Bool3DGridCAP
)
get_hbond_energies()
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
get()
(in
NoResFilterCreatorCAP
)
get()
(in
Bool3DGridKinemageWriterAP
)
get_hbond_weight_type()
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
get()
(in
OperateOnCertainResiduesAP
)
get()
(in
Bool3DGridKinemageWriterCAP
)
get_helix_fragments()
(in
HelixBundleFeatures
)
get()
(in
OperateOnCertainResiduesCAP
)
get()
(in
BumpGridAP
)
get_helix_pairs()
(in
HelixBundleFeatures
)
get()
(in
OperateOnCertainResiduesCreatorAP
)
get()
(in
BumpGridCAP
)
get_highres_scorefxn()
(in
SymDockBaseProtocol
)
get()
(in
OperateOnCertainResiduesCreatorCAP
)
get()
(in
HitAP
)
get_histogram_vector()
(in
OrbitalsStatistics
)
get()
(in
OperateOnResidueSubsetAP
)
get()
(in
HitCAP
)
get_hybrid_orbital_type()
(in
GasteigerAtomTypeData
)
get()
(in
OperateOnResidueSubsetCAP
)
get()
(in
HitHasherAP
)
get_i()
(in
Octree2D
)
get()
(in
OperateOnResidueSubsetCreatorAP
)
get()
(in
HitHasherCAP
)
get_i()
(in
StrandFragment
)
get()
(in
OperateOnResidueSubsetCreatorCAP
)
get()
(in
HitNeighborFinderAP
)
get_id()
(in
StrandFragment
)
get()
(in
OptCysHGAP
)
get()
(in
HitNeighborFinderCAP
)
get_id()
(in
FragmentScoringMethod
)
get()
(in
OptCysHGCAP
)
get()
(in
MatchCounterAP
)
get_ideal_conformer_by_CP_parameters()
(in
RingConformerSet
)
get()
(in
OptCysHGCreatorAP
)
get()
(in
MatchCounterCAP
)
get_ideal_conformer_by_name()
(in
RingConformerSet
)
get()
(in
OptCysHGCreatorCAP
)
get()
(in
MatchOutputTrackerAP
)
get_ideal_conformer_from_nus()
(in
RingConformerSet
)
get()
(in
OptHAP
)
get()
(in
MatchOutputTrackerCAP
)
get_ideal_hydrogenBond_atoms()
(in
GenPharmacophore
)
get()
(in
OptHCAP
)
get()
(in
MatchPositionModifierAP
)
get_idealize_loop_first()
(in
KinematicMover
)
get()
(in
OptHCreatorAP
)
get()
(in
MatchPositionModifierCAP
)
get_idx()
(in
rosetta.core.scoring.rna.data._core_scoring_rna_data_
)
get()
(in
OptHCreatorCAP
)
get()
(in
MatcherAP
)
get_idx_for_other_pose()
(in
FullModelInfo
)
get()
(in
PreserveCBetaAP
)
get()
(in
MatcherCAP
)
get_idx_for_other_pose_with_residue()
(in
FullModelInfo
)
get()
(in
PreserveCBetaCAP
)
get()
(in
MatcherMoverAP
)
get_ignore_unrecognized_res()
(in
RotamerRecovery
)
get()
(in
PreserveCBetaCreatorAP
)
get()
(in
MatcherMoverCAP
)
get_importance()
(in
NormalMode
)
get()
(in
PreserveCBetaCreatorCAP
)
get()
(in
MatcherMoverCreatorAP
)
get_incident_edge()
(in
NodeBase
)
get()
(in
PreventRepackingAP
)
get()
(in
MatcherMoverCreatorCAP
)
get_incident_otf_edge()
(in
SymmOnTheFlyNode
)
get()
(in
PreventRepackingCAP
)
get()
(in
MatcherOutputStatsAP
)
get_incident_symmin_edge()
(in
SymmMinimalistNode
)
get()
(in
PreventRepackingCreatorAP
)
get()
(in
MatcherOutputStatsCAP
)
get_incident_symmlinmem_edge()
(in
SymmLinearMemNode
)
get()
(in
PreventRepackingCreatorCAP
)
get()
(in
MatcherTaskAP
)
get_include_backbone_atoms()
(in
RRComparerAutomorphicRMSD
)
get()
(in
PreventRepackingRLTAP
)
get()
(in
MatcherTaskCAP
)
get_include_only_end()
(in
PcsEnergyParameter
)
get()
(in
PreventRepackingRLTCAP
)
get()
(in
NumNeighborsMPMAP
)
get_include_only_start()
(in
PcsEnergyParameter
)
get()
(in
PreventRepackingRLTCreatorAP
)
get()
(in
NumNeighborsMPMCAP
)
get_include_subunit()
(in
SymmData
)
get()
(in
PreventRepackingRLTCreatorCAP
)
get()
(in
OccupiedSpaceHashAP
)
get_incomplete_connections()
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
get()
(in
ReadResfileAP
)
get()
(in
OccupiedSpaceHashCAP
)
get_index()
(in
ClosureSolution
)
get()
(in
ReadResfileAndObeyLengthEventsAP
)
get()
(in
RemoveNorCTermMPMAP
)
get_index_of_adjacent_node()
(in
NodeBase
)
get()
(in
ReadResfileAndObeyLengthEventsCAP
)
get()
(in
RemoveNorCTermMPMCAP
)
get_indices_of_moving_chunks()
(in
RNA_ChunkLibrary
)
get()
(in
ReadResfileAndObeyLengthEventsCreatorAP
)
get()
(in
SecondaryStructureMPMAP
)
get_individual_scale()
(in
PcsDataLanthanide
)
get()
(in
ReadResfileAndObeyLengthEventsCreatorCAP
)
get()
(in
SecondaryStructureMPMCAP
)
get_individual_scale()
(in
PcsEnergyParameter
)
get()
(in
ReadResfileCAP
)
get()
(in
TaskOperationMPMAP
)
get_init_value()
(in
GetRBDOFValues
)
get()
(in
ReadResfileCreatorAP
)
get()
(in
TaskOperationMPMCAP
)
get_initial()
(in
TMalign
)
get()
(in
ReadResfileCreatorCAP
)
get()
(in
VoxelSetIteratorAP
)
get_initial_fgt()
(in
TMalign
)
get()
(in
ReplicateTaskAP
)
get()
(in
VoxelSetIteratorCAP
)
get_initial_local()
(in
TMalign
)
get()
(in
ReplicateTaskCAP
)
get()
(in
downstream_hitAP
)
get_initial_ss()
(in
TMalign
)
get()
(in
ReplicateTaskCreatorAP
)
get()
(in
downstream_hitCAP
)
get_initial_ssplus()
(in
TMalign
)
get()
(in
ReplicateTaskCreatorCAP
)
get()
(in
match_dspos1AP
)
get_inneriterations()
(in
SimAnnealerBase
)
get()
(in
ResFilterAP
)
get()
(in
match_dspos1CAP
)
get_inp_chi()
(in
RotData
)
get()
(in
ResFilterCAP
)
get()
(in
match_lite_equalsAP
)
get_input_data()
(in
PCS_data_input_manager
)
get()
(in
ResFilterCompositionAP
)
get()
(in
match_lite_equalsCAP
)
get_input_data()
(in
PCS_data_input_manager_Ts1
)
get()
(in
ResFilterCompositionCAP
)
get()
(in
match_lite_hasherAP
)
get_input_data()
(in
PCS_data_input_manager_Ts2
)
get()
(in
ResFilterCreatorAP
)
get()
(in
match_lite_hasherCAP
)
get_input_data()
(in
PCS_data_input_manager_Ts3
)
get()
(in
ResFilterCreatorCAP
)
get()
(in
upstream_hitAP
)
get_input_data()
(in
PCS_data_input_manager_Ts4
)
get()
(in
ResFilterFactoryAP
)
get()
(in
upstream_hitCAP
)
get_input_domain_from_full_model_info_const()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
get()
(in
ResFilterFactoryCAP
)
get()
(in
ActiveSiteGridAP
)
get_input_pose()
(in
Mover
)
get()
(in
ResLvlTaskOperationAP
)
get()
(in
ActiveSiteGridCAP
)
get_input_res()
(in
rosetta.protocols.stepwise.legacy.modeler.rna._protocols_stepwise_legacy_modeler_rna_'
)
get()
(in
ResLvlTaskOperationCAP
)
get()
(in
AtomAngleSecMatchRPEAP
)
get_input_streams()
(in
MetaPoseInputStream
)
get()
(in
ResLvlTaskOperationCreatorAP
)
get()
(in
AtomAngleSecMatchRPECAP
)
get_input_stub()
(in
Atom
)
get()
(in
ResLvlTaskOperationCreatorCAP
)
get()
(in
AtomDihedralSecMatchRPEAP
)
get_input_stub()
(in
Atom_
)
get()
(in
ResLvlTaskOperationFactoryAP
)
get()
(in
AtomDihedralSecMatchRPECAP
)
get_instance()
(in
TracerManager
)
get()
(in
ResLvlTaskOperationFactoryCAP
)
get()
(in
AtomDistanceSecMatchRPEAP
)
get_instance()
(in
SingletonBase_T_basic_datacache_WriteableCacheableDataFactory_T
)
get()
(in
ResidueHasPropertyAP
)
get()
(in
AtomDistanceSecMatchRPECAP
)
get_instance()
(in
SingletonBase_T_basic_message_listening_MessageListenerFactory_T
)
get()
(in
ResidueHasPropertyCAP
)
get()
(in
AtomGeometrySecMatchRPEAP
)
get_instance()
(in
SingletonBase_T_basic_resource_manager_FallbackConfigurationFactory_T
)
get()
(in
ResidueHasPropertyCreatorAP
)
get()
(in
AtomGeometrySecMatchRPECAP
)
get_instance()
(in
SingletonBase_T_basic_resource_manager_ResourceLoaderFactory_T
)
get()
(in
ResidueHasPropertyCreatorCAP
)
get()
(in
ClassicMatchAlgorithmAP
)
get_instance()
(in
SingletonBase_T_basic_resource_manager_ResourceLocatorFactory_T
)
get()
(in
ResidueIndexIsAP
)
get()
(in
ClassicMatchAlgorithmCAP
)
get_instance()
(in
SingletonBase_T_basic_resource_manager_ResourceManagerFactory_T
)
get()
(in
ResidueIndexIsCAP
)
get()
(in
DownstreamAlgorithmAP
)
get_instance()
(in
SingletonBase_T_basic_resource_manager_ResourceManager_T
)
get()
(in
ResidueIndexIsCreatorAP
)
get()
(in
DownstreamAlgorithmCAP
)
get_instance()
(in
SingletonBase_T_basic_resource_manager_ResourceOptionsFactory_T
)
get()
(in
ResidueIndexIsCreatorCAP
)
get()
(in
DownstreamBuilderAP
)
get_instance()
(in
SingletonBase_T_basic_sampling_orientations_QuaternionGridManager_T
)
get()
(in
ResidueIndexIsntAP
)
get()
(in
DownstreamBuilderCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ResidueIndexIsntCAP
)
get()
(in
GeometrySecMatchRPEAP
)
get_instance()
(in
SingletonBase_T_core_chemical_RingConformerManager_T
)
get()
(in
ResidueIndexIsntCreatorAP
)
get()
(in
GeometrySecMatchRPECAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ResidueIndexIsntCreatorCAP
)
get()
(in
LigandConformerBuilderAP
)
get_instance()
(in
OrbitalTypeMapper
)
get()
(in
ResidueLacksPropertyAP
)
get()
(in
LigandConformerBuilderCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ResidueLacksPropertyCAP
)
get()
(in
RigidLigandBuilderAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ResidueLacksPropertyCreatorAP
)
get()
(in
RigidLigandBuilderCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ResidueLacksPropertyCreatorCAP
)
get()
(in
ScoringSecMatchRPEAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ResidueName3IsAP
)
get()
(in
ScoringSecMatchRPECAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ResidueName3IsCAP
)
get()
(in
SecMatchEvaluatorFactoryAP
)
get_instance()
(in
SingletonBase_T_core_fragment_picking_old_FragmentLibraryManager_T
)
get()
(in
ResidueName3IsCreatorAP
)
get()
(in
SecMatchEvaluatorFactoryCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ResidueName3IsCreatorCAP
)
get()
(in
SecMatchResiduePairEvaluatorAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ResidueName3IsntAP
)
get()
(in
SecMatchResiduePairEvaluatorCAP
)
get_instance()
(in
SingletonBase_T_core_indexed_structure_store_StructureStoreManager_T
)
get()
(in
ResidueName3IsntCAP
)
get()
(in
SecondaryMatchUpstreamResProcessorAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ResidueName3IsntCreatorAP
)
get()
(in
SecondaryMatchUpstreamResProcessorCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ResidueName3IsntCreatorCAP
)
get()
(in
SecondaryMatcherToDownstreamResidueAP
)
get_instance()
(in
SingletonBase_T_core_io_silent_SilentStructFactory_T
)
get()
(in
ResiduePDBIndexIsAP
)
get()
(in
SecondaryMatcherToDownstreamResidueCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ResiduePDBIndexIsCAP
)
get()
(in
SecondaryMatcherToUpstreamResidueAP
)
get_instance()
(in
SingletonBase_T_core_pack_dunbrack_RotamerLibrary_T
)
get()
(in
ResiduePDBIndexIsCreatorAP
)
get()
(in
SecondaryMatcherToUpstreamResidueCAP
)
get_instance()
(in
SingletonBase_T_core_pack_dunbrack_RotamerLibrary_T
)
get()
(in
ResiduePDBIndexIsCreatorCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ResiduePDBIndexIsntAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_instance()
(in
SingletonBase_T_core_pack_interaction_graph_RotamerDotsRadiusData_T
)
get()
(in
ResiduePDBIndexIsntCAP
)
get()
(in
TargetRotamerCoordsAP
)
get_instance()
(in
SingletonBase_T_core_pack_interaction_graph_SurfacePotential_T
)
get()
(in
ResiduePDBIndexIsntCreatorAP
)
get()
(in
TargetRotamerCoordsCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ResiduePDBIndexIsntCreatorCAP
)
get()
(in
us_secmatch_hit_compareAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ResiduePDBInfoHasLabelAP
)
get()
(in
us_secmatch_hit_compareCAP
)
get_instance()
(in
ResFilterFactory
)
get()
(in
ResiduePDBInfoHasLabelCAP
)
get()
(in
BestMatchesCollectionAP
)
get_instance()
(in
SingletonBase_T_core_pack_task_operation_ResLvlTaskOperationFactory_T
)
get()
(in
ResiduePDBInfoHasLabelCreatorAP
)
get()
(in
BestMatchesCollectionCAP
)
get_instance()
(in
TaskOperationFactory
)
get()
(in
ResiduePDBInfoHasLabelCreatorCAP
)
get()
(in
CloudPDBWriterAP
)
get_instance()
(in
ResidueSelectorFactory
)
get()
(in
ResiduePDBInfoLacksLabelAP
)
get()
(in
CloudPDBWriterCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ResiduePDBInfoLacksLabelCAP
)
get()
(in
DownstreamCoordinateKinemageWriterAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ResiduePDBInfoLacksLabelCreatorAP
)
get()
(in
DownstreamCoordinateKinemageWriterCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ResiduePDBInfoLacksLabelCreatorCAP
)
get()
(in
DownstreamRMSEvaluatorAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ResidueTypeFilterAP
)
get()
(in
DownstreamRMSEvaluatorCAP
)
get_instance()
(in
SingletonBase_T_core_scoring_ScoringManager_T
)
get()
(in
ResidueTypeFilterCAP
)
get()
(in
LimitHitsPerRotamerFilterAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ResidueTypeFilterCreatorAP
)
get()
(in
LimitHitsPerRotamerFilterCAP
)
get_instance()
(in
SingletonBase_T_core_scoring_ScoringManager_T
)
get()
(in
ResidueTypeFilterCreatorCAP
)
get()
(in
MatchCollisionFilterAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
RestrictAbsentCanonicalAASAP
)
get()
(in
MatchCollisionFilterCAP
)
get_instance()
(in
SingletonBase_T_core_scoring_constraints_ConstraintFactory_T
)
get()
(in
RestrictAbsentCanonicalAASCAP
)
get()
(in
MatchConsolidatorAP
)
get_instance()
(in
SingletonBase_T_core_scoring_constraints_ConstraintIO_T
)
get()
(in
RestrictAbsentCanonicalAASCreatorAP
)
get()
(in
MatchConsolidatorCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
RestrictAbsentCanonicalAASCreatorCAP
)
get()
(in
MatchEvaluatorAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
RestrictAbsentCanonicalAASRLTAP
)
get()
(in
MatchEvaluatorCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
RestrictAbsentCanonicalAASRLTCAP
)
get()
(in
MatchFilterAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
RestrictAbsentCanonicalAASRLTCreatorAP
)
get()
(in
MatchFilterCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
RestrictAbsentCanonicalAASRLTCreatorCAP
)
get()
(in
MatchGrouperAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
RestrictResidueToRepackingAP
)
get()
(in
MatchGrouperCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
RestrictResidueToRepackingCAP
)
get()
(in
MatchOutputterAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
RestrictResidueToRepackingCreatorAP
)
get()
(in
MatchOutputterCAP
)
get_instance()
(in
SingletonBase_T_core_scoring_geometric_solvation_GridInfo_T
)
get()
(in
RestrictResidueToRepackingCreatorCAP
)
get()
(in
MatchProcessorAP
)
get_instance()
(in
SingletonBase_T_core_scoring_geometric_solvation_WaterWeightGridSet_T
)
get()
(in
RestrictToRepackingAP
)
get()
(in
MatchProcessorCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
RestrictToRepackingCAP
)
get()
(in
MatchScoreWriterAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
RestrictToRepackingCreatorAP
)
get()
(in
MatchScoreWriterCAP
)
get_instance()
(in
SingletonBase_T_core_scoring_ScoringManager_T
)
get()
(in
RestrictToRepackingCreatorCAP
)
get()
(in
OutputWriterAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
RestrictToRepackingRLTAP
)
get()
(in
OutputWriterCAP
)
get_instance()
(in
MotifHashManager
)
get()
(in
RestrictToRepackingRLTCAP
)
get()
(in
PDBWriterAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
RestrictToRepackingRLTCreatorAP
)
get()
(in
PDBWriterCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
RestrictToRepackingRLTCreatorCAP
)
get()
(in
PoseInserterAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
RestrictYSDesignAP
)
get()
(in
PoseInserterCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
RestrictYSDesignCAP
)
get()
(in
PoseMatchOutputWriterAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
RestrictYSDesignCreatorAP
)
get()
(in
PoseMatchOutputWriterCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
RestrictYSDesignCreatorCAP
)
get()
(in
ProcessorFactoryAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
RotamerExplosionAP
)
get()
(in
ProcessorFactoryCAP
)
get_instance()
(in
SingletonBase_T_core_scoring_saxs_SinXOverX_T
)
get()
(in
RotamerExplosionCAP
)
get()
(in
ResidueKinemageWriterAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
RotamerExplosionCreatorAP
)
get()
(in
ResidueKinemageWriterCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
RotamerExplosionCreatorCAP
)
get()
(in
SameChiBinComboGrouperAP
)
get_instance()
(in
SingletonBase_T_core_sequence_SequenceFactory_T
)
get()
(in
SetRotamerCouplingsAP
)
get()
(in
SameChiBinComboGrouperCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
SetRotamerCouplingsCAP
)
get()
(in
SameRotamerComboGrouperAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
SetRotamerCouplingsCreatorAP
)
get()
(in
SameRotamerComboGrouperCAP
)
get_instance()
(in
SingletonBase_T_protocols_jumping_StandardPairingLibrary_T
)
get()
(in
SetRotamerCouplingsCreatorCAP
)
get()
(in
SameSequenceAndDSPositionGrouperAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
SetRotamerLinksAP
)
get()
(in
SameSequenceAndDSPositionGrouperCAP
)
get_instance()
(in
SingletonBase_T_protocols_jumping_StandardPairingLibrary_T
)
get()
(in
SetRotamerLinksCAP
)
get()
(in
SameSequenceGrouperAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
SetRotamerLinksCreatorAP
)
get()
(in
SameSequenceGrouperCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
SetRotamerLinksCreatorCAP
)
get()
(in
SingleDownstreamResidueWriterAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
SingletonBase_T_core_pack_task_operation_ResLvlTaskOperationFactory_TAP
)
get()
(in
SingleDownstreamResidueWriterCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
SingletonBase_T_core_pack_task_operation_ResLvlTaskOperationFactory_TCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
TaskOperationAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
TaskOperationCAP
)
get()
(in
StateAccumulatingMatchFilterAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
TaskOperationCreatorAP
)
get()
(in
StateAccumulatingMatchFilterCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
TaskOperationCreatorCAP
)
get()
(in
UpstreamCollisionFilterAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
TaskOperationFactoryAP
)
get()
(in
UpstreamCollisionFilterCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
TaskOperationFactoryCAP
)
get()
(in
UpstreamDownstreamCollisionFilterAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
AndResidueSelectorAP
)
get()
(in
UpstreamDownstreamCollisionFilterCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
AndResidueSelectorCAP
)
get()
(in
UpstreamHitCacherAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
AndResidueSelectorCreatorAP
)
get()
(in
UpstreamHitCacherCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
AndResidueSelectorCreatorCAP
)
get()
(in
WriteKinemageOutputterAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ChainSelectorAP
)
get()
(in
WriteKinemageOutputterCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ChainSelectorCAP
)
get()
(in
WriteUpstreamCoordinateKinemageAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ChainSelectorCreatorAP
)
get()
(in
WriteUpstreamCoordinateKinemageCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ChainSelectorCreatorCAP
)
get()
(in
WriteUpstreamHitKinemageAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ClashBasedRepackShellSelectorAP
)
get()
(in
WriteUpstreamHitKinemageCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ClashBasedRepackShellSelectorCAP
)
get()
(in
BuildSetAP
)
get_instance()
(in
SingletonBase_T_protocols_evaluation_EvaluatorFactory_T
)
get()
(in
ClashBasedRepackShellSelectorCreatorAP
)
get()
(in
BuildSetCAP
)
get_instance()
(in
FeaturesReporterFactory
)
get()
(in
ClashBasedRepackShellSelectorCreatorCAP
)
get()
(in
DunbrackSCSamplerAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
InterGroupInterfaceByVectorSelectorAP
)
get()
(in
DunbrackSCSamplerCAP
)
get_instance()
(in
SingletonBase_T_core_pack_dunbrack_RotamerLibrary_T
)
get()
(in
InterGroupInterfaceByVectorSelectorCAP
)
get()
(in
FullChiSampleSetAP
)
get_instance()
(in
SingletonBase_T_core_scoring_geometric_solvation_GridInfo_T
)
get()
(in
InterGroupInterfaceByVectorSelectorCreatorAP
)
get()
(in
FullChiSampleSetCAP
)
get_instance()
(in
SingletonBase_T_core_scoring_geometric_solvation_WaterWeightGridSet_T
)
get()
(in
InterGroupInterfaceByVectorSelectorCreatorCAP
)
get()
(in
OriginalBackboneBuildPointAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
JumpDownstreamSelectorAP
)
get()
(in
OriginalBackboneBuildPointCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
JumpDownstreamSelectorCAP
)
get()
(in
ProteinBackboneBuildPointAP
)
get_instance()
(in
FilterFactory
)
get()
(in
JumpDownstreamSelectorCreatorAP
)
get()
(in
ProteinBackboneBuildPointCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
JumpDownstreamSelectorCreatorCAP
)
get()
(in
ProteinSCSamplerAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
JumpUpstreamSelectorAP
)
get()
(in
ProteinSCSamplerCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
JumpUpstreamSelectorCAP
)
get()
(in
ProteinUpstreamBuilderAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
JumpUpstreamSelectorCreatorAP
)
get()
(in
ProteinUpstreamBuilderCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
JumpUpstreamSelectorCreatorCAP
)
get()
(in
SampleStrategyDataAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
NeighborhoodResidueSelectorAP
)
get()
(in
SampleStrategyDataCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
NeighborhoodResidueSelectorCAP
)
get()
(in
ScaffoldBuildPointAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
NeighborhoodResidueSelectorCreatorAP
)
get()
(in
ScaffoldBuildPointCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
NeighborhoodResidueSelectorCreatorCAP
)
get()
(in
UpstreamBuilderAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
NotResidueSelectorAP
)
get()
(in
UpstreamBuilderCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
NotResidueSelectorCAP
)
get()
(in
UpstreamResTypeGeometryAP
)
get_instance()
(in
SingletonBase_T_protocols_genetic_algorithm_EntityElementFactory_T
)
get()
(in
NotResidueSelectorCreatorAP
)
get()
(in
UpstreamResTypeGeometryCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
NotResidueSelectorCreatorCAP
)
get()
(in
UpstreamResidueProcessorAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
NumNeighborsSelectorAP
)
get()
(in
UpstreamResidueProcessorCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
NumNeighborsSelectorCAP
)
get()
(in
BuildingBlockInterfaceOperationAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
NumNeighborsSelectorCreatorAP
)
get()
(in
BuildingBlockInterfaceOperationCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
NumNeighborsSelectorCreatorCAP
)
get()
(in
BuildingBlockInterfaceOperationCreatorAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
OrResidueSelectorAP
)
get()
(in
BuildingBlockInterfaceOperationCreatorCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
OrResidueSelectorCAP
)
get()
(in
ClashCheckFilterAP
)
get_instance()
(in
SingletonBase_T_protocols_jumping_StandardPairingLibrary_T
)
get()
(in
OrResidueSelectorCreatorAP
)
get()
(in
ClashCheckFilterCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
OrResidueSelectorCreatorCAP
)
get()
(in
ClashCheckFilterCreatorAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ResidueIndexSelectorAP
)
get()
(in
ClashCheckFilterCreatorCAP
)
get_instance()
(in
JobDistributor
)
get()
(in
ResidueIndexSelectorCAP
)
get()
(in
ExtractSubposeMoverAP
)
get_instance()
(in
SingletonBase_T_basic_resource_manager_ResourceManager_T
)
get()
(in
ResidueIndexSelectorCreatorAP
)
get()
(in
ExtractSubposeMoverCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ResidueIndexSelectorCreatorCAP
)
get()
(in
ExtractSubposeMoverCreatorAP
)
get_instance()
(in
SingletonBase_T_protocols_jd2_JobInputterFactory_T
)
get()
(in
ResidueNameSelectorAP
)
get()
(in
ExtractSubposeMoverCreatorCAP
)
get_instance()
(in
SingletonBase_T_protocols_jd2_JobOutputterFactory_T
)
get()
(in
ResidueNameSelectorCAP
)
get()
(in
GetRBDOFValuesAP
)
get_instance()
(in
DataLoaderFactory
)
get()
(in
ResidueNameSelectorCreatorAP
)
get()
(in
GetRBDOFValuesCAP
)
get_instance()
(in
SingletonBase_T_protocols_jumping_StandardDisulfPairingLibrary_T
)
get()
(in
ResidueNameSelectorCreatorCAP
)
get()
(in
GetRBDOFValuesCreatorAP
)
get_instance()
(in
SingletonBase_T_protocols_jumping_StandardPairingLibrary_T
)
get()
(in
ResidueSelectorAP
)
get()
(in
GetRBDOFValuesCreatorCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ResidueSelectorCAP
)
get()
(in
InterfacePackingFilterAP
)
get_instance()
(in
DistributionMap
)
get()
(in
ResidueSelectorCreatorAP
)
get()
(in
InterfacePackingFilterCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ResidueSelectorCreatorCAP
)
get()
(in
InterfacePackingFilterCreatorAP
)
get_instance()
(in
RDFFunctionFactory
)
get()
(in
ResidueSelectorFactoryAP
)
get()
(in
InterfacePackingFilterCreatorCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
ResidueSelectorFactoryCAP
)
get()
(in
MatDesGreedyOptMutationMoverAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
SecondaryStructureSelectorAP
)
get()
(in
MatDesGreedyOptMutationMoverCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
SecondaryStructureSelectorCAP
)
get()
(in
MatDesGreedyOptMutationMoverCreatorAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
SecondaryStructureSelectorCreatorAP
)
get()
(in
MatDesGreedyOptMutationMoverCreatorCAP
)
get_instance()
(in
SingletonBase_T_protocols_loops_LoopMoverFactory_T
)
get()
(in
SecondaryStructureSelectorCreatorCAP
)
get()
(in
MatDesPointMutationCalculatorAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
MatDesPointMutationCalculatorCAP
)
get_instance()
(in
SingletonBase_T_protocols_loops_loop_mover_refine_LoopRefineInnerCycleFactory_T
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
OligomericAverageDegreeFilterAP
)
get_instance()
(in
SingletonBase_T_protocols_loops_loops_definers_LoopsDefinerFactory_T
)
get()
(in
TrueResidueSelectorAP
)
get()
(in
OligomericAverageDegreeFilterCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
TrueResidueSelectorCAP
)
get()
(in
OligomericAverageDegreeFilterCreatorAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
TrueResidueSelectorCreatorAP
)
get()
(in
OligomericAverageDegreeFilterCreatorCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
TrueResidueSelectorCreatorCAP
)
get()
(in
SchemePlaceMotifsMoverAP
)
get_instance()
(in
SingletonBase_T_protocols_matdes_SymDofMoverSampler_T
)
get()
(in
RNA_ResidueLevelTaskAP
)
get()
(in
SchemePlaceMotifsMoverCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
RNA_ResidueLevelTaskCAP
)
get()
(in
SchemePlaceMotifsMoverCreatorAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
CrystInfoAP
)
get()
(in
SchemePlaceMotifsMoverCreatorCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
CrystInfoCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
MiniPoseAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
MiniPoseCAP
)
get()
(in
SingletonBase_T_protocols_matdes_SymDofMoverSampler_TAP
)
get_instance()
(in
MoverFactory
)
get()
(in
PDBInfoAP
)
get()
(in
SingletonBase_T_protocols_matdes_SymDofMoverSampler_TCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
PDBInfoCAP
)
get()
(in
SymDofMoverAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
PDBPoseMapAP
)
get()
(in
SymDofMoverCAP
)
get_instance()
(in
SingletonBase_T_protocols_genetic_algorithm_EntityElementFactory_T
)
get()
(in
PDBPoseMapCAP
)
get()
(in
SymDofMoverCreatorAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
Pose
)
get()
(in
SymDofMoverCreatorCAP
)
get_instance()
(in
SingletonBase_T_core_scoring_ScoringManager_T
)
get()
(in
PoseAP
)
get()
(in
SymDofMoverSamplerAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
PoseCAP
)
get()
(in
SymDofMoverSamplerCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
RemarkInfoAP
)
get()
(in
SymUnsatHbondFilterAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
RemarkInfoCAP
)
get()
(in
SymUnsatHbondFilterCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
RemarksAP
)
get()
(in
SymUnsatHbondFilterCreatorAP
)
get_instance()
(in
SingletonBase_T_protocols_genetic_algorithm_EntityElementFactory_T
)
get()
(in
RemarksCAP
)
get()
(in
SymUnsatHbondFilterCreatorCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
CartesianMDAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
CartesianMDCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
UnrecognizedAtomRecordAP
)
get()
(in
CartesianMDCreatorAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
UnrecognizedAtomRecordCAP
)
get()
(in
CartesianMDCreatorCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
xyzStripeHashPoseAP
)
get()
(in
ConstraintAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
xyzStripeHashPoseCAP
)
get()
(in
ConstraintCAP
)
get_instance()
(in
PosePropertyReporterFactory
)
get()
(in
CopyDofsAP
)
get()
(in
MDBaseAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
CopyDofsCAP
)
get()
(in
MDBaseCAP
)
get_instance()
(in
SingletonBase_T_protocols_rosetta_scripts_PoseSelectorFactory_T
)
get()
(in
CacheableDataTypeAP
)
get()
(in
MDscheduleDataAP
)
get_instance()
(in
SingletonBase_T_protocols_rotamer_recovery_RotamerRecoveryFactory_T
)
get()
(in
CacheableDataTypeCAP
)
get()
(in
MDscheduleDataCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
CacheableObserverAP
)
get()
(in
RattleAP
)
get_instance()
(in
SingletonBase_T_protocols_scoring_InterchainPotential_T
)
get()
(in
CacheableObserverCAP
)
get()
(in
RattleCAP
)
get_instance()
(in
SingletonBase_T_protocols_scoring_InterchainPotential_T
)
get()
(in
CacheableObserverTypeAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_instance()
(in
PCS_Energy_parameters_manager
)
get()
(in
CacheableObserverTypeCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_instance()
(in
SingletonBase_T_protocols_scoring_methods_pcs_PCS_data_input_manager_T
)
get()
(in
CacheablePoseRawPtrAP
)
get()
(in
ThermostatAP
)
get_instance()
(in
PcsDataCenterManagerSingleton
)
get()
(in
CacheablePoseRawPtrCAP
)
get()
(in
ThermostatCAP
)
get_instance()
(in
PcsInputCenterManager
)
get()
(in
LengthEventCollectorAP
)
get()
(in
MedalExchangeMoverAP
)
get_instance()
(in
SingletonBase_T_protocols_scoring_methods_pcs2_PcsEnergyParameterManager_T
)
get()
(in
LengthEventCollectorCAP
)
get()
(in
MedalExchangeMoverCAP
)
get_instance()
(in
SingletonBase_T_protocols_scoring_methods_pcs2_PcsGridSearchParameterManager_T
)
get()
(in
ObserverCacheAP
)
get()
(in
MedalMoverAP
)
get_instance()
(in
PCS_Energy_parameters_manager_Ts1
)
get()
(in
ObserverCacheCAP
)
get()
(in
MedalMoverCAP
)
get_instance()
(in
PCS_data_input_manager_Ts1
)
get()
(in
PositionConservedResiduesStoreAP
)
get()
(in
AddMPLigandMoverAP
)
get_instance()
(in
PCS_Energy_parameters_manager_Ts2
)
get()
(in
PositionConservedResiduesStoreCAP
)
get()
(in
AddMPLigandMoverCAP
)
get_instance()
(in
PCS_data_input_manager_Ts2
)
get()
(in
SpecialSegmentsObserverAP
)
get()
(in
AddMPLigandMoverCreatorAP
)
get_instance()
(in
PCS_Energy_parameters_manager_Ts3
)
get()
(in
SpecialSegmentsObserverCAP
)
get()
(in
AddMPLigandMoverCreatorCAP
)
get_instance()
(in
PCS_data_input_manager_Ts3
)
get()
(in
FullModelInfoAP
)
get()
(in
AddMembraneMoverAP
)
get_instance()
(in
PCS_Energy_parameters_manager_Ts4
)
get()
(in
FullModelInfoCAP
)
get()
(in
AddMembraneMoverCAP
)
get_instance()
(in
PCS_data_input_manager_Ts4
)
get()
(in
FullModelParametersAP
)
get()
(in
AddMembraneMoverCreatorAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
FullModelParametersCAP
)
get()
(in
AddMembraneMoverCreatorCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
CalculatorFactoryAP
)
get()
(in
FlipMoverAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
CalculatorFactoryCAP
)
get()
(in
FlipMoverCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
EnergyDependentCalculator
)
get()
(in
FlipMoverCreatorAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
EnergyDependentCalculatorAP
)
get()
(in
FlipMoverCreatorCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
EnergyDependentCalculatorCAP
)
get()
(in
MembranePositionFromTopologyMoverAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
PoseMetricCalculator
)
get()
(in
MembranePositionFromTopologyMoverCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
PoseMetricCalculatorAP
)
get()
(in
MembranePositionFromTopologyMoverCreatorAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
PoseMetricCalculatorCAP
)
get()
(in
MembranePositionFromTopologyMoverCreatorCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
PoseMetricContainer
)
get()
(in
RandomPositionRotationMoverAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
PoseMetricContainerAP
)
get()
(in
RandomPositionRotationMoverCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
PoseMetricContainerCAP
)
get()
(in
RandomPositionTranslationMoverAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
StructureDependentCalculator
)
get()
(in
RandomPositionTranslationMoverCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
StructureDependentCalculatorAP
)
get()
(in
RotationMoverAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
StructureDependentCalculatorCAP
)
get()
(in
RotationMoverCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
InterfaceDefinitionCalculatorAP
)
get()
(in
RotationMoverCreatorAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
InterfaceDefinitionCalculatorCAP
)
get()
(in
RotationMoverCreatorCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
InterfaceDeltaEnergeticsCalculatorAP
)
get()
(in
SetMembraneCenterMoverAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
InterfaceDeltaEnergeticsCalculatorCAP
)
get()
(in
SetMembraneCenterMoverCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
InterfaceNeighborDefinitionCalculatorAP
)
get()
(in
SetMembraneCenterMoverCreatorAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
InterfaceNeighborDefinitionCalculatorCAP
)
get()
(in
SetMembraneCenterMoverCreatorCAP
)
get_instance()
(in
SingletonBase_T_core_scoring_geometric_solvation_GridInfo_T
)
get()
(in
InterfaceSasaDefinitionCalculatorAP
)
get()
(in
SetMembraneNormalMoverAP
)
get_instance()
(in
SingletonBase_T_core_scoring_geometric_solvation_WaterWeightGridSet_T
)
get()
(in
InterfaceSasaDefinitionCalculatorCAP
)
get()
(in
SetMembraneNormalMoverCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
SasaCalculator2AP
)
get()
(in
SetMembraneNormalMoverCreatorAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
SasaCalculator2CAP
)
get()
(in
SetMembraneNormalMoverCreatorCAP
)
get_instance()
(in
SingletonBase_T_protocols_jumping_StandardDisulfPairingLibrary_T
)
get()
(in
SasaCalculatorLegacyAP
)
get()
(in
SetMembranePositionMoverAP
)
get_instance()
(in
SingletonBase_T_protocols_jumping_StandardPairingLibrary_T
)
get()
(in
SasaCalculatorLegacyCAP
)
get()
(in
SetMembranePositionMoverCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
SetMembranePositionMoverCreatorAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
SetMembranePositionMoverCreatorCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
BasePairAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
BasePairCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_instance()
(in
SingletonBase_T_core_chemical_ChemicalManager_T
)
get()
(in
BaseStackAP
)
get()
(in
TransformIntoMembraneMoverAP
)
get_instance()
(in
SingletonBase_T_utility_Inline_File_Provider_T
)
get()
(in
BaseStackCAP
)
get()
(in
TransformIntoMembraneMoverCAP
)
get_int()
(in
rosetta.utility.json_spirit._utility_json_spirit_
)
get()
(in
RNA_IdealCoordAP
)
get()
(in
TransformIntoMembraneMoverCreatorAP
)
get_integer_option()
(in
rosetta.basic._basic_
)
get()
(in
RNA_IdealCoordCAP
)
get()
(in
TransformIntoMembraneMoverCreatorCAP
)
get_integer_option()
(in
rosetta.basic.options._basic_options_
)
get()
(in
RNA_SuiteAssignmentAP
)
get()
(in
TranslationMoverAP
)
get_integer_vector_option()
(in
rosetta.basic._basic_
)
get()
(in
RNA_SuiteAssignmentCAP
)
get()
(in
TranslationMoverCAP
)
get_integer_vector_option()
(in
rosetta.basic.options._basic_options_
)
get()
(in
RNA_SuiteInfoAP
)
get()
(in
TranslationMoverCreatorAP
)
get_inter_atr()
(in
RotData
)
get()
(in
RNA_SuiteInfoCAP
)
get()
(in
TranslationMoverCreatorCAP
)
get_inter_rep()
(in
RotData
)
get()
(in
RNA_SuiteNameAP
)
get()
(in
TranslationRotationMoverAP
)
get_interface_delta_hbond_unsat()
(in
InterfaceAnalyzerMover
)
get()
(in
RNA_SuiteNameCAP
)
get()
(in
TranslationRotationMoverCAP
)
get_interface_delta_sasa()
(in
InterfaceAnalyzerMover
)
get()
(in
ConformationEventAP
)
get()
(in
TranslationRotationMoverCreatorAP
)
get_interface_dG()
(in
InterfaceAnalyzerMover
)
get()
(in
ConformationEventCAP
)
get()
(in
TranslationRotationMoverCreatorCAP
)
get_interface_packstat()
(in
InterfaceAnalyzerMover
)
get()
(in
DestructionEventAP
)
get()
(in
EmbeddingAP
)
get_interface_residues()
(in
EllipsoidalRandomizationMover
)
get()
(in
DestructionEventCAP
)
get()
(in
EmbeddingCAP
)
get_interface_residues()
(in
Interface
)
get()
(in
EnergyEventAP
)
get()
(in
EmbeddingDefAP
)
get_interface_set()
(in
InterfaceAnalyzerMover
)
get()
(in
EnergyEventCAP
)
get()
(in
EmbeddingDefCAP
)
get_interfaces()
(in
SymmData
)
get()
(in
GeneralEventAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_interpolated_esp_energy()
(in
NonPlaidFingerprint
)
get()
(in
GeneralEventCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_interpolated_esp_energy_with_type()
(in
NonPlaidFingerprint
)
get()
(in
APBSConfigAP
)
get()
(in
LipoFileLoaderAP
)
get_interpolator()
(in
SplineGenerator
)
get()
(in
APBSConfigCAP
)
get()
(in
LipoFileLoaderCAP
)
get_intra_atr()
(in
RotData
)
get()
(in
APBSResultAP
)
get()
(in
LipoFileLoaderCreatorAP
)
get_intra_rep()
(in
RotData
)
get()
(in
APBSResultCAP
)
get()
(in
LipoFileLoaderCreatorCAP
)
get_intracomponent_and_interneighbor_resis()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
APBSWrapperAP
)
get()
(in
LipoFileOptionsAP
)
get_intracomponent_and_interneighbor_subpose()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
APBSWrapperCAP
)
get()
(in
LipoFileOptionsCAP
)
get_intracomponent_and_interneighbor_subs()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
AtomNeighborAP
)
get()
(in
LipoFileOptionsCreatorAP
)
get_intracomponent_and_intraneighbor_resis()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
AtomNeighborCAP
)
get()
(in
LipoFileOptionsCreatorCAP
)
get_intracomponent_and_intraneighbor_subpose()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
AtomVDWAP
)
get()
(in
SpanFileLoaderAP
)
get_intracomponent_and_intraneighbor_subs()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
AtomVDWCAP
)
get()
(in
SpanFileLoaderCAP
)
get_intracomponent_and_neighbor_resis()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
BB_PosAP
)
get()
(in
SpanFileLoaderCreatorAP
)
get_intracomponent_and_neighbor_subpose()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
BB_PosCAP
)
get()
(in
SpanFileLoaderCreatorCAP
)
get_intracomponent_and_neighbor_subs()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
CSAAP
)
get()
(in
SpanFileOptionsAP
)
get_intracomponent_resis()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
CSACAP
)
get()
(in
SpanFileOptionsCAP
)
get_intracomponent_subpose()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
CenHBPotentialAP
)
get()
(in
SpanFileOptionsCreatorAP
)
get_intracomponent_subs()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
CenHBPotentialCAP
)
get()
(in
SpanFileOptionsCreatorCAP
)
get_intramolecular_delete_move_elements()
(in
StepWiseMoveSelector
)
get()
(in
CenListInfoAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_intrares_countpair()
(in
FA_ElecEnergy
)
get()
(in
CenListInfoCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_intrares_countpair()
(in
FA_GrpElecEnergy
)
get()
(in
CenRotEnvPairPotentialAP
)
get()
(in
SymmetricAddMembraneMoverAP
)
get_intrares_countpair()
(in
AnalyticEtableEnergy
)
get()
(in
CenRotEnvPairPotentialCAP
)
get()
(in
SymmetricAddMembraneMoverCAP
)
get_intrares_countpair()
(in
BaseEtableEnergy_T_core_scoring_etable_AnalyticEtableEnergy_T
)
get()
(in
ChemicalShiftAnisotropyAP
)
get()
(in
SymmetricAddMembraneMoverCreatorAP
)
get_intrares_countpair()
(in
BaseEtableEnergy_T_core_scoring_etable_TableLookupEtableEnergy_T
)
get()
(in
ChemicalShiftAnisotropyCAP
)
get()
(in
SymmetricAddMembraneMoverCreatorCAP
)
get_intrares_countpair()
(in
TableLookupEtableEnergy
)
get()
(in
ContextGraphAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_intrares_countpair()
(in
ContextDependentGeometricSolEnergy
)
get()
(in
ContextGraphCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_intrares_countpair()
(in
ContextIndependentGeometricSolEnergy
)
get()
(in
ContextGraphFactoryAP
)
get()
(in
VisualizeEmbeddingMoverAP
)
get_intrares_countpair()
(in
GeometricSolEnergyEvaluator
)
get()
(in
ContextGraphFactoryCAP
)
get()
(in
VisualizeEmbeddingMoverCAP
)
get_intrares_countpair()
(in
LK_PolarNonPolarEnergy
)
get()
(in
DCAP
)
get()
(in
VisualizeEmbeddingMoverCreatorAP
)
get_intrares_countpair()
(in
MMLJEnergyInter
)
get()
(in
DCCAP
)
get()
(in
VisualizeEmbeddingMoverCreatorCAP
)
get_intrares_countpair()
(in
MMLJEnergyIntra
)
get()
(in
DenseEnergyContainerAP
)
get()
(in
VisualizeMembraneMoverAP
)
get_intrares_countpair()
(in
RNA_FullAtomStackingEnergy
)
get()
(in
DenseEnergyContainerCAP
)
get()
(in
VisualizeMembraneMoverCAP
)
get_intrares_countpair()
(in
StackElecEnergy
)
get()
(in
DenseNeighborConstIteratorAP
)
get()
(in
VisualizeMembraneMoverCreatorAP
)
get_ionization_potential()
(in
GasteigerAtomTypeData
)
get()
(in
DenseNeighborConstIteratorCAP
)
get()
(in
VisualizeMembraneMoverCreatorCAP
)
get_irms()
(in
JSON_RPC
)
get()
(in
DenseNeighborIteratorAP
)
get()
(in
AddZincSiteConstraintsAP
)
get_is_cyd_res_at_termini()
(in
DisulfideInsertionMover
)
get()
(in
DenseNeighborIteratorCAP
)
get()
(in
AddZincSiteConstraintsCAP
)
get_is_do_minimize()
(in
PeptideDeriverFilter
)
get()
(in
DerivVectorPairAP
)
get()
(in
MatchGrafterAP
)
get_is_dump_cyclic_poses()
(in
PeptideDeriverFilter
)
get()
(in
DerivVectorPairCAP
)
get()
(in
MatchGrafterCAP
)
get_is_dump_peptide_pose()
(in
PeptideDeriverFilter
)
get()
(in
DipolarCouplingAP
)
get()
(in
MetalSiteResidueAP
)
get_is_dump_prepared_pose()
(in
PeptideDeriverFilter
)
get()
(in
DipolarCouplingCAP
)
get()
(in
MetalSiteResidueCAP
)
get_is_dump_report_file()
(in
PeptideDeriverFilter
)
get()
(in
DockingScoreFunctionAP
)
get()
(in
ZincHeterodimerMoverAP
)
get_is_report_gzip()
(in
PeptideDeriverFilter
)
get()
(in
DockingScoreFunctionCAP
)
get()
(in
ZincHeterodimerMoverCAP
)
get_is_skip_zero_isc()
(in
PeptideDeriverFilter
)
get()
(in
EMapVector
)
get()
(in
ZincSiteFinderAP
)
get_istream()
(in
Inline_File_Provider
)
get()
(in
EMapVectorAP
)
get()
(in
ZincSiteFinderCAP
)
get_iterations()
(in
DbTrajectoryReader
)
get()
(in
EMapVectorCAP
)
get()
(in
MotifGraftCreatorAP
)
get_iterations()
(in
DbTrajectoryReader
)
get()
(in
EnergiesAP
)
get()
(in
MotifGraftCreatorCAP
)
get_iterator_for_tag()
(in
SilentFileData
)
get()
(in
EnergiesCAP
)
get()
(in
MotifGraftMoverAP
)
get_j()
(in
Octree2D
)
get()
(in
EnergyEdgeAP
)
get()
(in
MotifGraftMoverCAP
)
get_j()
(in
StrandFragment
)
get()
(in
EnergyEdgeCAP
)
get()
(in
MotifMatchAP
)
get_jacobian()
(in
ClosureSolution
)
get()
(in
EnergyGraphAP
)
get()
(in
MotifMatchCAP
)
get_jd2_resource_manager_instance()
(in
JD2ResourceManager
)
get()
(in
EnergyGraphCAP
)
get()
(in
motif2scaffold_dataAP
)
get_job_options()
(in
LazyResourceManager
)
get()
(in
EnergyNodeAP
)
get()
(in
motif2scaffold_dataCAP
)
get_jump()
(in
MoveMap
)
get()
(in
EnergyNodeCAP
)
get()
(in
motif2scaffold_indexesAP
)
get_jump()
(in
AllowInsert
)
get()
(in
EnvPairPotentialAP
)
get()
(in
motif2scaffold_indexesCAP
)
get_jump_atom_id()
(in
AtomTree
)
get()
(in
EnvPairPotentialCAP
)
get()
(in
BuildPositionAP
)
get_jump_atom_ids()
(in
Conformation
)
get()
(in
ExcludedResPredicateAP
)
get()
(in
BuildPositionCAP
)
get_jump_clones()
(in
SymmData
)
get()
(in
ExcludedResPredicateCAP
)
get()
(in
IRCollectionAP
)
get_jump_id_from_chain()
(in
rosetta.core.pose._core_pose_
)
get()
(in
GenBornPoseInfoAP
)
get()
(in
IRCollectionCAP
)
get_jump_id_from_chain_id()
(in
rosetta.core.pose._core_pose_
)
get()
(in
GenBornPoseInfoCAP
)
get()
(in
LigandMotifSearchAP
)
get_jump_ids_from_chain()
(in
rosetta.core.pose._core_pose_
)
get()
(in
GenBornPotentialAP
)
get()
(in
LigandMotifSearchCAP
)
get_jump_ids_from_chain_ids()
(in
rosetta.core.pose._core_pose_
)
get()
(in
GenBornPotentialCAP
)
get()
(in
MotifAP
)
get_jump_name()
(in
SymmetryInfo
)
get()
(in
GenBornResidueInfoAP
)
get()
(in
MotifCAP
)
get_jump_name_to_components()
(in
SymmData
)
get()
(in
GenBornResidueInfoCAP
)
get()
(in
MotifDnaPackerAP
)
get_jump_name_to_components()
(in
SymmetryInfo
)
get()
(in
GenBornRotamerSetInfoAP
)
get()
(in
MotifDnaPackerCAP
)
get_jump_name_to_components()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
GenBornRotamerSetInfoCAP
)
get()
(in
MotifDnaPackerCreatorAP
)
get_jump_name_to_subunits()
(in
SymmData
)
get()
(in
HairpinAP
)
get()
(in
MotifDnaPackerCreatorCAP
)
get_jump_name_to_subunits()
(in
SymmetryInfo
)
get()
(in
HairpinCAP
)
get()
(in
MotifHitAP
)
get_jump_name_to_subunits()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
HairpinsAP
)
get()
(in
MotifHitCAP
)
get_jump_num()
(in
SymmetryInfo
)
get()
(in
HairpinsCAP
)
get()
(in
MotifLibraryAP
)
get_jump_num()
(in
DockingSlideIntoContact
)
get()
(in
HelicesAP
)
get()
(in
MotifLibraryCAP
)
get_jump_num()
(in
FaDockingSlideIntoContact
)
get()
(in
HelicesCAP
)
get()
(in
MotifSearchAP
)
get_jump_string_to_jump_num()
(in
SymmData
)
get()
(in
IsProteinCAPredicateAP
)
get()
(in
MotifSearchCAP
)
get_jump_that_builds_residue()
(in
FoldTree
)
get()
(in
IsProteinCAPredicateCAP
)
get()
(in
SingleMotifAP
)
get_k()
(in
NormalMode
)
get()
(in
LREnergyContainerAP
)
get()
(in
SingleMotifCAP
)
get_K_cluster_engine()
(in
rosetta.protocols.toolbox._protocols_toolbox_
)
get()
(in
LREnergyContainerCAP
)
get()
(in
CompositionMoverAP
)
get_KB_description()
(in
SplineFunc
)
get()
(in
MembraneEmbedAP
)
get()
(in
CompositionMoverCAP
)
get_km()
(in
rosetta.core.scoring.electron_density._core_scoring_electron_density_
)
get()
(in
MembraneEmbedCAP
)
get()
(in
CycleMoverAP
)
get_km()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
get()
(in
MembranePotentialAP
)
get()
(in
CycleMoverCAP
)
get_known_atoms()
(in
FormFactorManager
)
get()
(in
MembranePotentialCAP
)
get()
(in
CyclicMoverAP
)
get_L_equivalent()
(in
rosetta.core.chemical._core_chemical_
)
get()
(in
MembraneTopologyAP
)
get()
(in
CyclicMoverCAP
)
get_l_equivalent()
(in
Ramachandran
)
get()
(in
MembraneTopologyCAP
)
get()
(in
DsspMoverAP
)
get_l_equivalent()
(in
ReferenceEnergy
)
get()
(in
Membrane_FAEmbedAP
)
get()
(in
DsspMoverCAP
)
get_L_move()
(in
BBGaussianMover
)
get()
(in
Membrane_FAEmbedCAP
)
get()
(in
DsspMoverCreatorAP
)
get_L_prime()
(in
BBGaussianMover
)
get()
(in
Membrane_FAPotentialAP
)
get()
(in
DsspMoverCreatorCAP
)
get_label()
(in
PCS_tensor
)
get()
(in
Membrane_FAPotentialCAP
)
get()
(in
DualMonteCarloAP
)
get_label()
(in
PcsTensor
)
get()
(in
MinScoreScoreFunctionAP
)
get()
(in
DualMonteCarloCAP
)
get_label()
(in
PCS_tensor_Ts1
)
get()
(in
MinScoreScoreFunctionCAP
)
get()
(in
EXCN_ConvergedAP
)
get_label()
(in
PCS_tensor_Ts2
)
get()
(in
MinimizationEdgeAP
)
get()
(in
EXCN_ConvergedCAP
)
get_label()
(in
PCS_tensor_Ts3
)
get()
(in
MinimizationEdgeCAP
)
get()
(in
FastLinearFuncAP
)
get_label()
(in
PCS_tensor_Ts4
)
get()
(in
MinimizationGraphAP
)
get()
(in
FastLinearFuncCAP
)
get_label()
(in
rosetta.protocols.ss_prediction._protocols_ss_prediction_
)
get()
(in
MinimizationGraphCAP
)
get()
(in
FilterMoverAP
)
get_landmark_resnum()
(in
AntibodyInfo
)
get()
(in
MinimizationNodeAP
)
get()
(in
FilterMoverCAP
)
get_largest_chunk_size()
(in
VallProvider
)
get()
(in
MinimizationNodeCAP
)
get()
(in
FilterReporterMoverAP
)
get_last_checkpoint()
(in
MetropolisHastingsMover
)
get()
(in
NeighborListAP
)
get()
(in
FilterReporterMoverCAP
)
get_last_move_status()
(in
Mover
)
get()
(in
NeighborListCAP
)
get()
(in
GeometricFuncAP
)
get_last_protein_residue()
(in
rosetta.protocols.toolbox.match_enzdes_util._protocols_toolbox_match_enzdes_util_
)
get()
(in
OmegaTetherAP
)
get()
(in
GeometricFuncCAP
)
get_last_residue_id()
(in
CSTalosIO
)
get()
(in
OmegaTetherCAP
)
get()
(in
IfMoverAP
)
get_last_residue_id()
(in
PhiPsiTalosIO
)
get()
(in
OneToAllEnergyContainerAP
)
get()
(in
IfMoverCAP
)
get_last_struct_id()
(in
ReportToDB
)
get()
(in
OneToAllEnergyContainerCAP
)
get()
(in
IfMoverCreatorAP
)
get_late_factory()
(in
AnchorMoversData
)
get()
(in
OneToAllNeighborConstIteratorAP
)
get()
(in
IfMoverCreatorCAP
)
get_lb_function_cutoff()
(in
Interpolator
)
get()
(in
OneToAllNeighborConstIteratorCAP
)
get()
(in
InvGeometricFuncAP
)
get_lbdy()
(in
SplineGenerator
)
get()
(in
OneToAllNeighborIteratorAP
)
get()
(in
InvGeometricFuncCAP
)
get_lbx()
(in
SplineGenerator
)
get()
(in
OneToAllNeighborIteratorCAP
)
get()
(in
IteratedConvergenceMoverAP
)
get_lby()
(in
SplineGenerator
)
get()
(in
PQRAP
)
get()
(in
IteratedConvergenceMoverCAP
)
get_leap_6dof()
(in
rosetta.protocols.sic_dock._protocols_sic_dock_
)
get()
(in
PQRCAP
)
get()
(in
IteratedConvergenceMoverCreatorAP
)
get_leap_lower_stub()
(in
rosetta.protocols.sic_dock._protocols_sic_dock_
)
get()
(in
P_AAAP
)
get()
(in
IteratedConvergenceMoverCreatorCAP
)
get_leap_upper_stub()
(in
rosetta.protocols.sic_dock._protocols_sic_dock_
)
get()
(in
P_AACAP
)
get()
(in
JumpOutMoverAP
)
get_least_common_ancertor_jump()
(in
SymmData
)
get()
(in
PairEPotentialAP
)
get()
(in
JumpOutMoverCAP
)
get_least_common_ancertor_virtual()
(in
SymmData
)
get()
(in
PairEPotentialCAP
)
get()
(in
LinearFuncAP
)
get_legrand_2way_orientation()
(in
rosetta.core.scoring.sasa._core_scoring_sasa_
)
get()
(in
PeptideBondedEnergyContainerAP
)
get()
(in
LinearFuncCAP
)
get_legrand_atomic_overlap()
(in
rosetta.core.scoring.sasa._core_scoring_sasa_
)
get()
(in
PeptideBondedEnergyContainerCAP
)
get()
(in
MCShowMoverAP
)
get_legrand_orientation()
(in
rosetta.core.scoring.sasa._core_scoring_sasa_
)
get()
(in
PeptideBondedNeighborConstIteratorAP
)
get()
(in
MCShowMoverCAP
)
get_legrand_sasa_angles()
(in
rosetta.core.scoring.sasa._core_scoring_sasa_
)
get()
(in
PeptideBondedNeighborConstIteratorCAP
)
get()
(in
MonteCarloAP
)
get_legrand_sasa_masks()
(in
rosetta.core.scoring.sasa._core_scoring_sasa_
)
get()
(in
PeptideBondedNeighborIteratorAP
)
get()
(in
MonteCarloCAP
)
get_length()
(in
FragmentCandidate
)
get()
(in
PeptideBondedNeighborIteratorCAP
)
get()
(in
MonteCarloExceptionConvergeAP
)
get_length()
(in
JCouplingIO
)
get()
(in
PoissonBoltzmannPotentialAP
)
get()
(in
MonteCarloExceptionConvergeCAP
)
get_lib_chi_val()
(in
RotData
)
get()
(in
PoissonBoltzmannPotentialCAP
)
get()
(in
MonteCarloUtilAP
)
get_library_by_aa()
(in
RotamerLibrary
)
get()
(in
PredicateAP
)
get()
(in
MonteCarloUtilCAP
)
get_lig_conformers()
(in
DownstreamBuilder
)
get()
(in
PredicateCAP
)
get()
(in
MoveMapMoverAP
)
get_lig_conformers()
(in
LigandConformerBuilder
)
get()
(in
ProQPotentialAP
)
get()
(in
MoveMapMoverCAP
)
get_lig_conformers()
(in
RigidLigandBuilder
)
get()
(in
ProQPotentialCAP
)
get()
(in
MoverAP
)
get_lig_restype()
(in
LigandConformer
)
get()
(in
RDCAP
)
get()
(in
MoverApplyingMoverAP
)
get_ligand_areas()
(in
InterfaceBuilder
)
get()
(in
RDCCAP
)
get()
(in
MoverApplyingMoverCAP
)
get_ligand_atom_id()
(in
MetalSiteResidue
)
get()
(in
RDC_RohlAP
)
get()
(in
MoverCAP
)
get_ligand_atom_name()
(in
MetalSiteResidue
)
get()
(in
RDC_RohlCAP
)
get()
(in
MoverContainerAP
)
get_ligand_atom_xyz()
(in
MetalSiteResidue
)
get()
(in
Rama2BOffsetAP
)
get()
(in
MoverContainerCAP
)
get_ligand_id()
(in
LigandBaseProtocol
)
get()
(in
Rama2BOffsetCAP
)
get()
(in
MoverCreatorAP
)
get_ligand_jump_id()
(in
LigandBaseProtocol
)
get()
(in
Ramachandran2BAP
)
get()
(in
MoverCreatorCAP
)
get_ligand_jump_id()
(in
CoupledMover
)
get()
(in
Ramachandran2BCAP
)
get()
(in
MoverFactoryAP
)
get_ligand_resnum()
(in
BoltzmannRotamerMover
)
get()
(in
RamachandranAP
)
get()
(in
MoverFactoryCAP
)
get_ligand_resnum()
(in
CoupledMover
)
get()
(in
RamachandranCAP
)
get()
(in
MoverForPoseListAP
)
get_ligand_seqpos()
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
get()
(in
ResPairMinimizationDataAP
)
get()
(in
MoverForPoseListCAP
)
get_ligand_tether()
(in
TetherLigand
)
get()
(in
ResPairMinimizationDataCAP
)
get()
(in
MoverStatisticsAP
)
get_ligand_torsion_constraints()
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
get()
(in
ResRangePredicateAP
)
get()
(in
MoverStatisticsCAP
)
get_ligand_weight()
(in
BoltzmannRotamerMover
)
get()
(in
ResRangePredicateCAP
)
get()
(in
NullMoverAP
)
get_ligand_weight()
(in
CoupledMover
)
get()
(in
ResSingleMinimizationDataAP
)
get()
(in
NullMoverCAP
)
get_LigandMotifLibrary_user()
(in
rosetta.protocols.motifs._protocols_motifs_
)
get()
(in
ResSingleMinimizationDataCAP
)
get()
(in
PDBDumpMoverAP
)
get_light_chain_type()
(in
AntibodyInfo
)
get()
(in
ResidualDipolarCouplingAP
)
get()
(in
PDBDumpMoverCAP
)
get_light_chain_type_enum()
(in
AntibodyInfo
)
get()
(in
ResidualDipolarCouplingCAP
)
get()
(in
PoseConditionAP
)
get_list_of_custom_variants()
(in
ResidueProperties
)
get()
(in
ResidualDipolarCoupling_RohlAP
)
get()
(in
PoseConditionCAP
)
get_list_of_properties()
(in
ResidueProperties
)
get()
(in
ResidualDipolarCoupling_RohlCAP
)
get()
(in
ProfilerMoverAP
)
get_list_of_residues_in_sheet_i()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
ResidueNblistDataAP
)
get()
(in
ProfilerMoverCAP
)
get_list_of_variants()
(in
ResidueProperties
)
get()
(in
ResidueNblistDataCAP
)
get()
(in
PyMolMoverAP
)
get_listener()
(in
MessageListenerFactory
)
get()
(in
ResidueNeighborConstIteratorAP
)
get()
(in
PyMolMoverCAP
)
get_lj_hbond_hdis()
(in
Etable
)
get()
(in
ResidueNeighborConstIteratorCAP
)
get()
(in
PyMolMoverCreatorAP
)
get_lj_hbond_OH_donor_dis()
(in
Etable
)
get()
(in
ResidueNeighborIteratorAP
)
get()
(in
PyMolMoverCreatorCAP
)
get_lk_fractional_contribution()
(in
LK_BallEnergy
)
get()
(in
ResidueNeighborIteratorCAP
)
get()
(in
PyMolObserverAP
)
get_lk_fractional_contribution_for_single_water()
(in
LK_BallEnergy
)
get()
(in
ResiduePairNeighborListAP
)
get()
(in
PyMolObserverCAP
)
get_local_sequence_mapping()
(in
InsertChunkMover
)
get()
(in
ResiduePairNeighborListCAP
)
get()
(in
RampingFuncAP
)
get_localstrandpair_penalty()
(in
SecondaryStructureWeights
)
get()
(in
SS_InfoAP
)
get()
(in
RampingFuncCAP
)
get_locator_id()
(in
FallbackConfiguration
)
get()
(in
SS_InfoCAP
)
get()
(in
RampingMoverAP
)
get_locator_id()
(in
NativeFallbackConfiguration
)
get()
(in
SS_Killhairpins_InfoAP
)
get()
(in
RampingMoverCAP
)
get_locator_id()
(in
LoopsFileFallbackConfiguration
)
get()
(in
SS_Killhairpins_InfoCAP
)
get()
(in
RampingMoverCreatorAP
)
get_locator_id()
(in
SurfaceVectorFallbackConfiguration
)
get()
(in
ScoreFunctionAP
)
get()
(in
RampingMoverCreatorCAP
)
get_logL_values()
(in
RNA_DMS_Potential
)
get()
(in
ScoreFunctionCAP
)
get()
(in
RandomMoverAP
)
get_loop()
(in
LoopMover
)
get()
(in
ScoreFunctionFactoryAP
)
get()
(in
RandomMoverCAP
)
get_loop_combine_rate()
(in
IndependentLoopMover
)
get()
(in
ScoreFunctionFactoryCAP
)
get()
(in
RandomMoverCreatorAP
)
get_loop_file()
(in
AnchorMoversData
)
get()
(in
ScoreFunctionInfoAP
)
get()
(in
RandomMoverCreatorCAP
)
get_loop_file_reader()
(in
Loops
)
get()
(in
ScoreFunctionInfoCAP
)
get()
(in
RepeatMoverAP
)
get_loop_info()
(in
rosetta.protocols.mpi_refinement._protocols_mpi_refinement_
)
get()
(in
ScoreTypeManagerAP
)
get()
(in
RepeatMoverCAP
)
get_loop_info_full()
(in
rosetta.protocols.mpi_refinement._protocols_mpi_refinement_
)
get()
(in
ScoreTypeManagerCAP
)
get()
(in
ReplicaExchangeMCAP
)
get_loop_sequence()
(in
KinematicMover
)
get()
(in
ScoringManagerAP
)
get()
(in
ReplicaExchangeMCCAP
)
get_loop_size()
(in
LoopHashMap
)
get()
(in
ScoringManagerCAP
)
get()
(in
ResIdAP
)
get_loops()
(in
LoopRelaxMover
)
get()
(in
SecondaryStructurePotentialAP
)
get()
(in
ResIdCAP
)
get_loops()
(in
AnchoredGraftMover
)
get()
(in
SecondaryStructurePotentialCAP
)
get()
(in
SequenceMoverAP
)
get_loops()
(in
LoopMover
)
get()
(in
SecondaryStructureWeightsAP
)
get()
(in
SequenceMoverCAP
)
get_loops()
(in
LoopMover_Perturb_CCD
)
get()
(in
SecondaryStructureWeightsCAP
)
get()
(in
SimulatedTemperingAP
)
get_loops()
(in
LoopMover_Refine_CCD
)
get()
(in
SelectedResPredicateAP
)
get()
(in
SimulatedTemperingCAP
)
get_lower_bound_dy()
(in
SplineFunc
)
get()
(in
SelectedResPredicateCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_lower_bound_x()
(in
SplineFunc
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_lower_bound_y()
(in
SplineFunc
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
StructureRestrictorAP
)
get_lowest_energy_conformer()
(in
RingConformerSet
)
get()
(in
SingletonBase_T_core_scoring_ScoringManager_TAP
)
get()
(in
StructureRestrictorCAP
)
get_lowres_scorefxn()
(in
SymDockBaseProtocol
)
get()
(in
SingletonBase_T_core_scoring_ScoringManager_TCAP
)
get()
(in
TrialCounterAP
)
get_main_group()
(in
Element
)
get()
(in
SmallAtNbAP
)
get()
(in
TrialCounterCAP
)
get_manager()
(in
FormFactorManager
)
get()
(in
SmallAtNbCAP
)
get()
(in
TrialMoverAP
)
get_mapreso()
(in
ElectronDensityOptions
)
get()
(in
SmoothEnvPairPotentialAP
)
get()
(in
TrialMoverCAP
)
get_mArray()
(in
rosetta.utility.json_spirit._utility_json_spirit_
)
get()
(in
SmoothEnvPairPotentialCAP
)
get()
(in
UDPSocketClientAP
)
get_masks()
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
SmoothScoreTermCoeffsAP
)
get()
(in
UDPSocketClientCAP
)
get_masks()
(in
LeGrandSasa
)
get()
(in
SmoothScoreTermCoeffsCAP
)
get()
(in
VectorPoseMoverAP
)
get_matching_fragments()
(in
MotifGraftMover
)
get()
(in
StrandsAP
)
get()
(in
VectorPoseMoverCAP
)
get_matching_motifs()
(in
MotifHash
)
get()
(in
StrandsCAP
)
get()
(in
WhileMoverAP
)
get_matching_motifs()
(in
MotifHashManager
)
get()
(in
TMscoreAP
)
get()
(in
WhileMoverCAP
)
get_max0()
(in
FadeInterval
)
get()
(in
TMscoreCAP
)
get()
(in
ConvergenceCheckAP
)
get_max_attempts()
(in
LoopBuilder
)
get()
(in
TMscoreStoreAP
)
get()
(in
ConvergenceCheckCAP
)
get_max_bbrms()
(in
LoopHashSampler
)
get()
(in
TMscoreStoreCAP
)
get()
(in
EXCN_ConvergedAP
)
get_max_centroid_to_atom_distance()
(in
rosetta.protocols.stepwise.modeler.rna.rigid_body._protocols_stepwise_modeler_rna_rigid_body_
)
get()
(in
TenANeighborEdgeAP
)
get()
(in
EXCN_ConvergedCAP
)
get_max_chainbreak()
(in
LoopAnalyzerMover
)
get()
(in
TenANeighborEdgeCAP
)
get()
(in
ClustererAP
)
get_max_dist_ndx()
(in
KClusterElement
)
get()
(in
TenANeighborGraphAP
)
get()
(in
ClustererCAP
)
get_max_distance()
(in
KClusterElement
)
get()
(in
TenANeighborGraphCAP
)
get()
(in
MPI_Refine_EmperorAP
)
get_max_kic_build_attempts()
(in
LoopMover_Perturb_KIC
)
get()
(in
TenANeighborNodeAP
)
get()
(in
MPI_Refine_EmperorCAP
)
get_max_nstruct()
(in
LoopHashSampler
)
get()
(in
TenANeighborNodeCAP
)
get()
(in
MPI_Refine_MasterAP
)
get_max_omega()
(in
LoopAnalyzerMover
)
get()
(in
TwelveANeighborEdgeAP
)
get()
(in
MPI_Refine_MasterCAP
)
get_max_pbond()
(in
LoopAnalyzerMover
)
get()
(in
TwelveANeighborEdgeCAP
)
get()
(in
MPI_RefinementAP
)
get_max_rama()
(in
LoopAnalyzerMover
)
get()
(in
TwelveANeighborGraphAP
)
get()
(in
MPI_RefinementCAP
)
get_max_rms()
(in
LoopHashSampler
)
get()
(in
TwelveANeighborGraphCAP
)
get()
(in
MethodParamsAP
)
get_max_seq_num_from_res_map()
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
get()
(in
TwelveANeighborNodeAP
)
get()
(in
MethodParamsCAP
)
get_max_sheet_id()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
TwelveANeighborNodeCAP
)
get()
(in
MultiObjectiveAP
)
get_max_strand_dist_cutoff()
(in
SecondaryStructureWeights
)
get()
(in
UnfoldedStatePotentialAP
)
get()
(in
MultiObjectiveCAP
)
get_maxE_contribution_to_pi_system()
(in
GasteigerAtomTypeData
)
get()
(in
UnfoldedStatePotentialCAP
)
get()
(in
SchedulerAP
)
get_maximum_scores()
(in
rosetta.core.sequence._core_sequence_
)
get()
(in
WaterAdductHBondPotentialAP
)
get()
(in
SchedulerCAP
)
get_mc()
(in
DockMCMCycle
)
get()
(in
WaterAdductHBondPotentialCAP
)
get()
(in
Serial_RefineAP
)
get_mc()
(in
DockingHighResLegacy
)
get()
(in
BinTransitionCalculatorAP
)
get()
(in
Serial_RefineCAP
)
get_mc()
(in
DockingLowRes
)
get()
(in
BinTransitionCalculatorCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_mc()
(in
ClassicRelax
)
get()
(in
BinTransitionDataAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_MC()
(in
MonteCarloRecover
)
get()
(in
BinTransitionDataCAP
)
get()
(in
StructAvrgMoverAP
)
get_MC()
(in
MonteCarloReset
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
StructAvrgMoverCAP
)
get_MC()
(in
MonteCarloTest
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
WorkUnit_CombinePoseAP
)
get_mc()
(in
SymDockingHiRes
)
get()
(in
SingletonBase_T_core_scoring_ScoringManager_TAP
)
get()
(in
WorkUnit_CombinePoseCAP
)
get_mc()
(in
SymDockingLowRes
)
get()
(in
SingletonBase_T_core_scoring_ScoringManager_TCAP
)
get()
(in
WorkUnit_FragInsertAP
)
get_mc_temperature()
(in
ShakeStructureMover
)
get()
(in
CHIEnergyFunctionAP
)
get()
(in
WorkUnit_FragInsertCAP
)
get_median_rms()
(in
ClusterBase
)
get()
(in
CHIEnergyFunctionCAP
)
get()
(in
WorkUnit_KicCloserAP
)
get_mem_foot_print()
(in
BackboneDB
)
get()
(in
CarbonHBondEnergyAP
)
get()
(in
WorkUnit_KicCloserCAP
)
get_mem_foot_print()
(in
BackboneSegment
)
get()
(in
CarbonHBondEnergyCAP
)
get()
(in
WorkUnit_LoopHashAP
)
get_membrane_depth_dependent_weight()
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
get()
(in
CarbonHBondEnergyCreatorAP
)
get()
(in
WorkUnit_LoopHashCAP
)
get_Membrane_FAPotential()
(in
ScoringManager
)
get()
(in
CarbonHBondEnergyCreatorCAP
)
get()
(in
WorkUnit_MDAP
)
get_MembraneData()
(in
ScoringManager
)
get()
(in
CarbonHBondPotentialAP
)
get()
(in
WorkUnit_MDCAP
)
get_MembranePotential()
(in
ScoringManager
)
get()
(in
CarbonHBondPotentialCAP
)
get()
(in
WorkUnit_NormalModeAP
)
get_message()
(in
ResfileReaderException
)
get()
(in
AmbiguousConstraintAP
)
get()
(in
WorkUnit_NormalModeCAP
)
get_metal_binding_atoms()
(in
ResidueType
)
get()
(in
AmbiguousConstraintCAP
)
get()
(in
WorkUnit_PartialAbinitioAP
)
get_metal_binding_atoms()
(in
Residue
)
get()
(in
AmbiguousConstraintCreatorAP
)
get()
(in
WorkUnit_PartialAbinitioCAP
)
get_mg_potential_costheta_gaussian_parameter()
(in
RNA_Mg_KnowledgeBasedPotential
)
get()
(in
AmbiguousConstraintCreatorCAP
)
get()
(in
WorkUnit_RamaPerturberAP
)
get_mg_potential_costheta_indirect_gaussian_parameter()
(in
RNA_Mg_KnowledgeBasedPotential
)
get()
(in
AmbiguousNMRConstraintAP
)
get()
(in
WorkUnit_RamaPerturberCAP
)
get_mg_potential_gaussian_parameter()
(in
RNA_Mg_KnowledgeBasedPotential
)
get()
(in
AmbiguousNMRConstraintCAP
)
get()
(in
WorkUnit_RelaxAP
)
get_mg_potential_indirect_gaussian_parameter()
(in
RNA_Mg_KnowledgeBasedPotential
)
get()
(in
AmbiguousNMRConstraintCreatorAP
)
get()
(in
WorkUnit_RelaxCAP
)
get_middle_residue()
(in
FragmentCandidate
)
get()
(in
AmbiguousNMRConstraintCreatorCAP
)
get()
(in
WorkUnit_SamplerAP
)
get_middle_ss()
(in
FragmentCandidate
)
get()
(in
AmbiguousNMRDistanceConstraintAP
)
get()
(in
WorkUnit_SamplerCAP
)
get_midstep_stub()
(in
rosetta.core.scoring.dna._core_scoring_dna_
)
get()
(in
AmbiguousNMRDistanceConstraintCAP
)
get()
(in
WorkUnit_bbGaussAP
)
get_min0()
(in
FadeInterval
)
get()
(in
AmbiguousNMRDistanceConstraintCreatorAP
)
get()
(in
WorkUnit_bbGaussCAP
)
get_min_allowed_score()
(in
FragmentScoringMethod
)
get()
(in
AmbiguousNMRDistanceConstraintCreatorCAP
)
get()
(in
MultiStateFitnessFunctionAP
)
get_min_bbrms()
(in
LoopHashSampler
)
get()
(in
AngleConstraintAP
)
get()
(in
MultiStateFitnessFunctionCAP
)
get_min_cent_dist()
(in
RotData
)
get()
(in
AngleConstraintCAP
)
get()
(in
SingletonBase_T_protocols_genetic_algorithm_EntityElementFactory_TAP
)
get_min_chi()
(in
RotData
)
get()
(in
AngleConstraintCreatorAP
)
get()
(in
SingletonBase_T_protocols_genetic_algorithm_EntityElementFactory_TCAP
)
get_min_cst()
(in
ddGMover
)
get()
(in
AngleConstraintCreatorCAP
)
get()
(in
NcbbDockDesignProtocolAP
)
get_min_cst()
(in
ShakeStructureMover
)
get()
(in
AtomPairConstraintAP
)
get()
(in
NcbbDockDesignProtocolCAP
)
get_min_eps()
(in
RotData
)
get()
(in
AtomPairConstraintCAP
)
get()
(in
NcbbDockDesignProtocolCreatorAP
)
get_min_omg()
(in
RotData
)
get()
(in
AtomPairConstraintCreatorAP
)
get()
(in
NcbbDockDesignProtocolCreatorCAP
)
get_min_options()
(in
MinimizationRefiner
)
get()
(in
AtomPairConstraintCreatorCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_min_rms()
(in
LoopHashSampler
)
get()
(in
BackboneStubConstraintAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_min_scorefunction()
(in
ShakeStructureMover
)
get()
(in
BackboneStubConstraintCAP
)
get()
(in
SingletonBase_T_core_scoring_ScoringManager_TAP
)
get_min_type()
(in
AnchoredPerturbMover
)
get()
(in
BackboneStubLinearConstraintAP
)
get()
(in
SingletonBase_T_core_scoring_ScoringManager_TCAP
)
get_min_type()
(in
AnchoredRefineMover
)
get()
(in
BackboneStubLinearConstraintCAP
)
get()
(in
OopCreatorMoverAP
)
get_minimization_node()
(in
MinimizationGraph
)
get()
(in
BigBinConstraintAP
)
get()
(in
OopCreatorMoverCAP
)
get_minimize_best_tensor()
(in
PCS_Energy_parameters_manager
)
get()
(in
BigBinConstraintCAP
)
get()
(in
OopCreatorMoverCreatorAP
)
get_minimize_best_tensor()
(in
PCS_Energy_parameters_manager_Ts1
)
get()
(in
BigBinConstraintCreatorAP
)
get()
(in
OopCreatorMoverCreatorCAP
)
get_minimize_best_tensor()
(in
PCS_Energy_parameters_manager_Ts2
)
get()
(in
BigBinConstraintCreatorCAP
)
get()
(in
OopDockDesignProtocolAP
)
get_minimize_best_tensor()
(in
PCS_Energy_parameters_manager_Ts3
)
get()
(in
BoundFuncAP
)
get()
(in
OopDockDesignProtocolCAP
)
get_minimize_best_tensor()
(in
PCS_Energy_parameters_manager_Ts4
)
get()
(in
BoundFuncCAP
)
get()
(in
OopDockDesignProtocolCreatorAP
)
get_minimize_scorefxn()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
get()
(in
ConstantConstraintAP
)
get()
(in
OopDockDesignProtocolCreatorCAP
)
get_minimize_with_cst()
(in
ShakeStructureMover
)
get()
(in
ConstantConstraintCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_missing_template_other_res()
(in
EnzConstraintParameters
)
get()
(in
ConstraintAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_missing_template_res()
(in
EnzConstraintParameters
)
get()
(in
ConstraintCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_MMBondAngleLibrary()
(in
ScoringManager
)
get()
(in
ConstraintCreatorAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_MMBondLengthLibrary()
(in
ScoringManager
)
get()
(in
ConstraintCreatorCAP
)
get()
(in
CartesianNormalModeMoverAP
)
get_MMLJEnergyTable()
(in
ScoringManager
)
get()
(in
ConstraintEdgeAP
)
get()
(in
CartesianNormalModeMoverCAP
)
get_MMLJLibrary()
(in
ScoringManager
)
get()
(in
ConstraintEdgeCAP
)
get()
(in
ContactStructAP
)
get_MMTorsionLibrary()
(in
ScoringManager
)
get()
(in
ConstraintFactoryAP
)
get()
(in
ContactStructCAP
)
get_mObject()
(in
rosetta.utility.json_spirit._utility_json_spirit_
)
get()
(in
ConstraintFactoryCAP
)
get()
(in
NormalModeAP
)
get_modeler_scorefxn()
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
get()
(in
ConstraintGraphAP
)
get()
(in
NormalModeCAP
)
get_mono_aa_pose_copy()
(in
MotifGraftMover
)
get()
(in
ConstraintGraphCAP
)
get()
(in
NormalModeMinimizerAP
)
get_most_recent_total_score()
(in
FragmentScoreMap
)
get()
(in
ConstraintIOAP
)
get()
(in
NormalModeMinimizerCAP
)
get_motif_atom_mask()
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
get()
(in
ConstraintIOCAP
)
get()
(in
NormalModeMinimizerCreatorAP
)
get_motif_build_position_defs_user()
(in
rosetta.protocols.motifs._protocols_motifs_
)
get()
(in
ConstraintNodeAP
)
get()
(in
NormalModeMinimizerCreatorCAP
)
get_motif_build_positions_user()
(in
rosetta.protocols.motifs._protocols_motifs_
)
get()
(in
ConstraintNodeCAP
)
get()
(in
NormalModeMultifuncAP
)
get_motif_fragments_RMSD()
(in
MotifMatch
)
get()
(in
ConstraintSetAP
)
get()
(in
NormalModeMultifuncCAP
)
get_motif_hash_BB_BB()
(in
MotifHashManager
)
get()
(in
ConstraintSetCAP
)
get()
(in
NormalModeRelaxMoverAP
)
get_motif_hash_BB_PH()
(in
MotifHashManager
)
get()
(in
ConstraintsAP
)
get()
(in
NormalModeRelaxMoverCAP
)
get_motif_hash_BB_PO()
(in
MotifHashManager
)
get()
(in
ConstraintsCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_motif_hash_by_fname()
(in
MotifHashManager
)
get()
(in
ConstraintsEnergyAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_motif_hash_SC_BB()
(in
MotifHashManager
)
get()
(in
ConstraintsEnergyCAP
)
get()
(in
TorsionNormalModeMoverAP
)
get_motif_hash_SC_SC()
(in
MotifHashManager
)
get()
(in
ConstraintsEnergyCreatorAP
)
get()
(in
TorsionNormalModeMoverCAP
)
get_motif_ranges()
(in
MotifMatch
)
get()
(in
ConstraintsEnergyCreatorCAP
)
get()
(in
ConstraintedOptimizationWeightFuncAP
)
get_motif_scaffold_superposition_and_RMSD()
(in
MotifGraftMover
)
get()
(in
CoordinateConstraintAP
)
get()
(in
ConstraintedOptimizationWeightFuncCAP
)
get_MotifLibrary_user()
(in
rosetta.protocols.motifs._protocols_motifs_
)
get()
(in
CoordinateConstraintCAP
)
get()
(in
DDGBindOptEDataAP
)
get_move_elements_from_full_model_info()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
get()
(in
CoordinateConstraintCreatorAP
)
get()
(in
DDGBindOptEDataCAP
)
get_move_elements_from_full_model_info_const()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
get()
(in
CoordinateConstraintCreatorCAP
)
get()
(in
DDGMutationOptEDataAP
)
get_move_type_string()
(in
rosetta.protocols.stepwise.monte_carlo._protocols_stepwise_monte_carlo_
)
get()
(in
CstEnergyContainerAP
)
get()
(in
DDGMutationOptEDataCAP
)
get_movemap()
(in
KinematicPerturber
)
get()
(in
CstEnergyContainerCAP
)
get()
(in
DGBindOptEDataAP
)
get_movemap()
(in
RelaxProtocolBase
)
get()
(in
CstMinimizationDataAP
)
get()
(in
DGBindOptEDataCAP
)
get_movemap()
(in
DisulfideInsertionMover
)
get()
(in
CstMinimizationDataCAP
)
get()
(in
IterativeOptEDriverAP
)
get_MoveMap_for_AllCDRsSideChains_and_H3backbone()
(in
AntibodyInfo
)
get()
(in
CstResNeighbConstIteratorAP
)
get()
(in
IterativeOptEDriverCAP
)
get_MoveMap_for_Loops()
(in
AntibodyInfo
)
get()
(in
CstResNeighbConstIteratorCAP
)
get()
(in
NestedEnergyTermDDGMutationOptEDataAP
)
get_MoveMap_for_LoopsandDock()
(in
AntibodyInfo
)
get()
(in
CstResNeighbIteratorAP
)
get()
(in
NestedEnergyTermDDGMutationOptEDataCAP
)
get_movemap_from_task()
(in
AntibodyDesignModeler
)
get()
(in
CstResNeighbIteratorCAP
)
get()
(in
NestedEnergyTermPNatAAOptEPositionDataAP
)
get_movement()
(in
RBSegment
)
get()
(in
DOF_ConstraintAP
)
get()
(in
NestedEnergyTermPNatAAOptEPositionDataCAP
)
get_mover()
(in
FilterReporterMover
)
get()
(in
DOF_ConstraintCAP
)
get()
(in
OptEDataAP
)
get_mover()
(in
MoverContainer
)
get()
(in
DihedralConstraintAP
)
get()
(in
OptEDataCAP
)
get_mover()
(in
RepeatMover
)
get()
(in
DihedralConstraintCAP
)
get()
(in
OptEMultifuncAP
)
get_mover()
(in
ParsedProtocol
)
get()
(in
DihedralConstraintCreatorAP
)
get()
(in
OptEMultifuncCAP
)
get_mover()
(in
MoverList
)
get()
(in
DihedralConstraintCreatorCAP
)
get()
(in
OptEPositionDataAP
)
get_mover_cycles()
(in
LoopProtocol
)
get()
(in
DihedralPairConstraintAP
)
get()
(in
OptEPositionDataCAP
)
get_mover_filter_pair()
(in
ParsedProtocol
)
get()
(in
DihedralPairConstraintCAP
)
get()
(in
OptEPositionDataFactoryAP
)
get_movers()
(in
CompositionMover
)
get()
(in
DihedralPairConstraintCreatorAP
)
get()
(in
OptEPositionDataFactoryCAP
)
get_moving_res_from_full_model_info()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
get()
(in
DihedralPairConstraintCreatorCAP
)
get()
(in
OptEVariableExpressionAP
)
get_moving_res_including_domain_boundaries()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
get()
(in
DistancePairConstraintAP
)
get()
(in
OptEVariableExpressionCAP
)
get_multichain_constructor()
(in
InterfaceAnalyzerMover
)
get()
(in
DistancePairConstraintCAP
)
get()
(in
PNatAAOptEPositionDataAP
)
get_mutant_averaged_score_components()
(in
ddGMover
)
get()
(in
FabConstraintAP
)
get()
(in
PNatAAOptEPositionDataCAP
)
get_mutant_averaged_totals()
(in
ddGMover
)
get()
(in
FabConstraintCAP
)
get()
(in
PNatAAOptERotamerDataAP
)
get_mutant_min_score_components()
(in
ddGMover
)
get()
(in
FabConstraintCreatorAP
)
get()
(in
PNatAAOptERotamerDataCAP
)
get_mutant_min_totals()
(in
ddGMover
)
get()
(in
FabConstraintCreatorCAP
)
get()
(in
PNatLigPoseOptEDataAP
)
get_n()
(in
FAElecContextData
)
get()
(in
KofNConstraintAP
)
get()
(in
PNatLigPoseOptEDataCAP
)
get_N1_lonepair_donor_angle()
(in
RNA_DMS_Potential
)
get()
(in
KofNConstraintCAP
)
get()
(in
PNatRotOptEPositionDataAP
)
get_n_alignments()
(in
ResidualDipolarCoupling
)
get()
(in
KofNConstraintCreatorAP
)
get()
(in
PNatRotOptEPositionDataCAP
)
get_n_baserotamers_for_rotblock()
(in
ContinuousRotamerSet
)
get()
(in
KofNConstraintCreatorCAP
)
get()
(in
PNatRotOptERotamerDataAP
)
get_n_bb()
(in
MakeRotLibOptionsData
)
get()
(in
LocalCoordinateConstraintAP
)
get()
(in
PNatRotOptERotamerDataCAP
)
get_N_C_stems_foldtree()
(in
GraftedStemOptimizer
)
get()
(in
LocalCoordinateConstraintCAP
)
get()
(in
PNatStructureOptEDataAP
)
get_n_centroids()
(in
MakeRotLibOptionsData
)
get()
(in
LocalCoordinateConstraintCreatorAP
)
get()
(in
PNatStructureOptEDataCAP
)
get_n_chi()
(in
MakeRotLibOptionsData
)
get()
(in
LocalCoordinateConstraintCreatorCAP
)
get()
(in
PSSMOptEPositionDataAP
)
get_n_cyd_seqpos()
(in
DisulfideInsertionMover
)
get()
(in
MultiConstraintAP
)
get()
(in
PSSMOptEPositionDataCAP
)
get_n_lanthanides()
(in
PCS_data
)
get()
(in
MultiConstraintCAP
)
get()
(in
SingleStructureDataAP
)
get_n_lanthanides()
(in
PcsDataCenter
)
get()
(in
MultiConstraintCreatorAP
)
get()
(in
SingleStructureDataCAP
)
get_n_lanthanides()
(in
PCS_data_Ts1
)
get()
(in
MultiConstraintCreatorCAP
)
get()
(in
WeightRangeConstraintAP
)
get_n_lanthanides()
(in
PCS_data_Ts2
)
get()
(in
NamedAngleConstraintAP
)
get()
(in
WeightRangeConstraintCAP
)
get_n_lanthanides()
(in
PCS_data_Ts3
)
get()
(in
NamedAngleConstraintCAP
)
get()
(in
WrappedOptEExpressionCreatorAP
)
get_n_lanthanides()
(in
PCS_data_Ts4
)
get()
(in
NamedAngleConstraintCreatorAP
)
get()
(in
WrappedOptEExpressionCreatorCAP
)
get_n_multi_data()
(in
PcsDataCenterManager
)
get()
(in
NamedAngleConstraintCreatorCAP
)
get()
(in
WrapperOptEMultifuncAP
)
get_n_multi_data()
(in
PcsDataCenterManagerSingleton
)
get()
(in
NamedAtomPairConstraintAP
)
get()
(in
WrapperOptEMultifuncCAP
)
get_n_multi_data()
(in
PcsEnergyParameterManager
)
get()
(in
NamedAtomPairConstraintCAP
)
get()
(in
FormatStringOutputterAP
)
get_n_multi_data()
(in
PcsGridSearchParameterManager
)
get()
(in
NonResidueTypeConstraintAP
)
get()
(in
FormatStringOutputterCAP
)
get_n_pcs()
(in
PCS_data_per_lanthanides
)
get()
(in
NonResidueTypeConstraintCAP
)
get()
(in
OutputterAP
)
get_n_pcs()
(in
PcsDataLanthanide
)
get()
(in
Obsolet_NamedAtomPairConstraintAP
)
get()
(in
OutputterCAP
)
get_n_pcs()
(in
PCS_data_per_lanthanides_Ts1
)
get()
(in
Obsolet_NamedAtomPairConstraintCAP
)
get()
(in
PDBOutputterAP
)
get_n_pcs()
(in
PCS_data_per_lanthanides_Ts2
)
get()
(in
OffsetPeriodicBoundFuncAP
)
get()
(in
PDBOutputterCAP
)
get_n_pcs()
(in
PCS_data_per_lanthanides_Ts3
)
get()
(in
OffsetPeriodicBoundFuncCAP
)
get()
(in
ResFileOutputterAP
)
get_n_pcs()
(in
PCS_data_per_lanthanides_Ts4
)
get()
(in
PeriodicBoundFuncAP
)
get()
(in
ResFileOutputterCAP
)
get_n_residue_groups()
(in
RotamerSet
)
get()
(in
PeriodicBoundFuncCAP
)
get()
(in
SilentFileOutputterAP
)
get_n_residue_groups()
(in
RotamerSet_
)
get()
(in
ResidueConstraintsAP
)
get()
(in
SilentFileOutputterCAP
)
get_n_residue_groups()
(in
RotamerSubset
)
get()
(in
ResidueConstraintsCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_n_residue_groups()
(in
SymmetricRotamerSet_
)
get()
(in
ResidueTypeConstraintAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_n_residue_groups()
(in
FlexbbRotamerSet
)
get()
(in
ResidueTypeConstraintCAP
)
get()
(in
BasicSimAnnealerRepackerAP
)
get_n_residue_types()
(in
RotamerSetBase
)
get()
(in
ResidueTypeLinkingConstraintAP
)
get()
(in
BasicSimAnnealerRepackerCAP
)
get_n_residue_types()
(in
ContinuousRotamerSet
)
get()
(in
ResidueTypeLinkingConstraintCAP
)
get()
(in
DaemonSetAP
)
get_n_residue_types()
(in
RotamerSet
)
get()
(in
SequenceProfileConstraintAP
)
get()
(in
DaemonSetCAP
)
get_n_residue_types()
(in
RotamerSet_
)
get()
(in
SequenceProfileConstraintCAP
)
get()
(in
DenseIGRepackerAP
)
get_n_residue_types()
(in
RotamerSubset
)
get()
(in
SequenceProfileConstraintCreatorAP
)
get()
(in
DenseIGRepackerCAP
)
get_n_residue_types()
(in
SymmetricRotamerSet_
)
get()
(in
SequenceProfileConstraintCreatorCAP
)
get()
(in
DoubleDenseIGRepackerAP
)
get_n_residue_types()
(in
FlexbbRotamerSet
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
DoubleDenseIGRepackerCAP
)
get_n_rotamers_for_residue_group()
(in
RotamerSet
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
DynamicAggregateFunctionAP
)
get_n_rotamers_for_residue_group()
(in
RotamerSet_
)
get()
(in
SingletonBase_T_core_scoring_constraints_ConstraintFactory_TAP
)
get()
(in
DynamicAggregateFunctionCAP
)
get_n_rotamers_for_residue_group()
(in
RotamerSubset
)
get()
(in
SingletonBase_T_core_scoring_constraints_ConstraintFactory_TCAP
)
get()
(in
DynamicAggregateFunctionDriverAP
)
get_n_rotamers_for_residue_group()
(in
SymmetricRotamerSet_
)
get()
(in
SingletonBase_T_core_scoring_constraints_ConstraintIO_TAP
)
get()
(in
DynamicAggregateFunctionDriverCAP
)
get_n_rotamers_for_residue_group()
(in
FlexbbRotamerSet
)
get()
(in
SingletonBase_T_core_scoring_constraints_ConstraintIO_TCAP
)
get()
(in
EntityCorrespondenceAP
)
get_n_rotamers_for_residue_type()
(in
RotamerSetBase
)
get()
(in
SiteConstraintAP
)
get()
(in
EntityCorrespondenceCAP
)
get_n_rotamers_for_residue_type()
(in
RotamerSet
)
get()
(in
SiteConstraintCAP
)
get()
(in
EntityFuncAP
)
get_n_rotamers_for_residue_type()
(in
RotamerSet_
)
get()
(in
SiteConstraintCreatorAP
)
get()
(in
EntityFuncCAP
)
get_n_rotamers_for_residue_type()
(in
RotamerSubset
)
get()
(in
SiteConstraintCreatorCAP
)
get()
(in
EntityFuncExpressionCreatorAP
)
get_n_rotamers_for_residue_type()
(in
SymmetricRotamerSet_
)
get()
(in
SiteConstraintResiduesAP
)
get()
(in
EntityFuncExpressionCreatorCAP
)
get_n_rotamers_for_residue_type()
(in
FlexbbRotamerSet
)
get()
(in
SiteConstraintResiduesCAP
)
get()
(in
ExpExpressionAP
)
get_n_sampling_rotamers_for_rotblock()
(in
ContinuousRotamerSet
)
get()
(in
SiteConstraintResiduesCreatorAP
)
get()
(in
ExpExpressionCAP
)
get_n_trial_min()
(in
PcsEnergyParameter
)
get()
(in
SiteConstraintResiduesCreatorCAP
)
get()
(in
FASTER_IG_RepackerAP
)
get_NACCESS_SASA_radii()
(in
RotamerDotsRadiusData
)
get()
(in
PhenixInterfaceAP
)
get()
(in
FASTER_IG_RepackerCAP
)
get_NACCESS_SASA_radii_with_expanded_polars()
(in
RotamerDotsRadiusData
)
get()
(in
PhenixInterfaceCAP
)
get()
(in
InSetExpressionAP
)
get_name()
(in
GasteigerAtomTypeData
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
InSetExpressionCAP
)
get_name()
(in
AndResidueSelector
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
IterativeVectorExpressionAP
)
get_name()
(in
ChainSelector
)
get()
(in
XtalMLEnergyAP
)
get()
(in
IterativeVectorExpressionCAP
)
get_name()
(in
ClashBasedRepackShellSelector
)
get()
(in
XtalMLEnergyCAP
)
get()
(in
LnExpressionAP
)
get_name()
(in
InterGroupInterfaceByVectorSelector
)
get()
(in
XtalMLEnergyCreatorAP
)
get()
(in
LnExpressionCAP
)
get_name()
(in
JumpDownstreamSelector
)
get()
(in
XtalMLEnergyCreatorCAP
)
get()
(in
MPIMultistateFitnessFunctionAP
)
get_name()
(in
JumpUpstreamSelector
)
get()
(in
AtomPairFuncListAP
)
get()
(in
MPIMultistateFitnessFunctionCAP
)
get_name()
(in
NeighborhoodResidueSelector
)
get()
(in
AtomPairFuncListCAP
)
get()
(in
MultistateAggregateFunctionAP
)
get_name()
(in
NotResidueSelector
)
get()
(in
DistanceFuncAP
)
get()
(in
MultistateAggregateFunctionCAP
)
get_name()
(in
NumNeighborsSelector
)
get()
(in
DistanceFuncCAP
)
get()
(in
MultistateFitnessFunctionAP
)
get_name()
(in
OrResidueSelector
)
get()
(in
FullatomCustomPairDistanceEnergyAP
)
get()
(in
MultistateFitnessFunctionCAP
)
get_name()
(in
ResidueIndexSelector
)
get()
(in
FullatomCustomPairDistanceEnergyCAP
)
get()
(in
NPDPropCalculatorAP
)
get_name()
(in
ResidueNameSelector
)
get()
(in
FullatomCustomPairDistanceEnergyCreatorAP
)
get()
(in
NPDPropCalculatorCAP
)
get_name()
(in
ResidueSelector
)
get()
(in
FullatomCustomPairDistanceEnergyCreatorCAP
)
get()
(in
NPDPropCalculatorCreatorAP
)
get_name()
(in
SecondaryStructureSelector
)
get()
(in
atoms_and_func_structAP
)
get()
(in
NPDPropCalculatorCreatorCAP
)
get_name()
(in
TrueResidueSelector
)
get()
(in
atoms_and_func_structCAP
)
get()
(in
PackDaemonAP
)
get_name()
(in
CacheableDataType
)
get()
(in
resatom_and_func_structAP
)
get()
(in
PackDaemonCAP
)
get_name()
(in
ScoreFunction
)
get()
(in
resatom_and_func_structCAP
)
get()
(in
PowExpressionAP
)
get_name()
(in
FadeInterval
)
get()
(in
CBSG_Dihedral_FuncAP
)
get()
(in
PowExpressionCAP
)
get_name()
(in
LeGrandSasa
)
get()
(in
CBSG_Dihedral_FuncCAP
)
get()
(in
QuickRepackerAP
)
get_name()
(in
SasaMethod
)
get()
(in
CB_Angle_FuncAP
)
get()
(in
QuickRepackerCAP
)
get_name()
(in
RotamerDumpMover
)
get()
(in
CB_Angle_FuncCAP
)
get()
(in
RotamerSubsetRepackerAP
)
get_name()
(in
AbrelaxMover
)
get()
(in
CaCbCbCa_Dihedral_FuncAP
)
get()
(in
RotamerSubsetRepackerCAP
)
get_name()
(in
ClassicAbinitio
)
get()
(in
CaCbCbCa_Dihedral_FuncCAP
)
get()
(in
SingletonBase_T_protocols_genetic_algorithm_EntityElementFactory_TAP
)
get_name()
(in
ConstraintFragmentSampler
)
get()
(in
CaCbCb_Angle_FuncAP
)
get()
(in
SingletonBase_T_protocols_genetic_algorithm_EntityElementFactory_TCAP
)
get_name()
(in
DomainAssembly
)
get()
(in
CaCbCb_Angle_FuncCAP
)
get()
(in
StructureFileNamesAP
)
get_name()
(in
DoubleLayerKinematicAbinitio
)
get()
(in
Cb_Distance_FuncAP
)
get()
(in
StructureFileNamesCAP
)
get_name()
(in
FoldConstraints
)
get()
(in
Cb_Distance_FuncCAP
)
get()
(in
SurrogateVariableExpressionAP
)
get_name()
(in
FragmentSampler
)
get()
(in
Cen_Distance_FuncAP
)
get()
(in
SurrogateVariableExpressionCAP
)
get_name()
(in
JumpingFoldConstraintsWrapper
)
get()
(in
Cen_Distance_FuncCAP
)
get()
(in
TopEntitySetAP
)
get_name()
(in
KinematicAbinitio
)
get()
(in
CentroidDisulfideEnergyAP
)
get()
(in
TopEntitySetCAP
)
get_name()
(in
KinematicTaskControl
)
get()
(in
CentroidDisulfideEnergyCAP
)
get()
(in
VMaxAP
)
get_name()
(in
LoopJumpFoldCst
)
get()
(in
CentroidDisulfideEnergyComponentsAP
)
get()
(in
VMaxByAP
)
get_name()
(in
MembraneAbinitio
)
get()
(in
CentroidDisulfideEnergyComponentsCAP
)
get()
(in
VMaxByCAP
)
get_name()
(in
Protocol
)
get()
(in
CentroidDisulfideEnergyContainerAP
)
get()
(in
VMaxCAP
)
get_name()
(in
ResolutionSwitcher
)
get()
(in
CentroidDisulfideEnergyContainerCAP
)
get()
(in
VMinAP
)
get_name()
(in
AbscriptLoopCloserCM
)
get()
(in
CentroidDisulfideEnergyCreatorAP
)
get()
(in
VMinByAP
)
get_name()
(in
AbscriptMover
)
get()
(in
CentroidDisulfideEnergyCreatorCAP
)
get()
(in
VMinByCAP
)
get_name()
(in
AbscriptStageMover
)
get()
(in
CentroidDisulfideNeighborConstIteratorAP
)
get()
(in
VMinCAP
)
get_name()
(in
ConstraintPreparer
)
get()
(in
CentroidDisulfideNeighborConstIteratorCAP
)
get()
(in
VariableVectorExpressionAP
)
get_name()
(in
FragmentCM
)
get()
(in
CentroidDisulfideNeighborIteratorAP
)
get()
(in
VariableVectorExpressionCAP
)
get_name()
(in
FragmentJumpCM
)
get()
(in
CentroidDisulfideNeighborIteratorCAP
)
get()
(in
VectorExpressionAP
)
get_name()
(in
RigidChunkCM
)
get()
(in
CentroidDisulfidePotentialAP
)
get()
(in
VectorExpressionCAP
)
get_name()
(in
StagePreparer
)
get()
(in
CentroidDisulfidePotentialCAP
)
get()
(in
VectorExpressionCreatorAP
)
get_name()
(in
StructPerturberCM
)
get()
(in
DisulfResNeighbConstIteratorAP
)
get()
(in
VectorExpressionCreatorCAP
)
get_name()
(in
InterfaceAnalyzerMover
)
get()
(in
DisulfResNeighbConstIteratorCAP
)
get()
(in
VectorFunction2AP
)
get_name()
(in
LoopAnalyzerMover
)
get()
(in
DisulfResNeighbIteratorAP
)
get()
(in
VectorFunction2CAP
)
get_name()
(in
PackStatMover
)
get()
(in
DisulfResNeighbIteratorCAP
)
get()
(in
VectorFunctionAP
)
get_name()
(in
AnchoredDesignMover
)
get()
(in
DisulfideAtomIndicesAP
)
get()
(in
VectorFunctionCAP
)
get_name()
(in
AnchoredPerturbMover
)
get()
(in
DisulfideAtomIndicesCAP
)
get()
(in
SetupPoissonBoltzmannPotentialAP
)
get_name()
(in
AnchoredRefineMover
)
get()
(in
DisulfideMatchingDatabaseAP
)
get()
(in
SetupPoissonBoltzmannPotentialCAP
)
get_name()
(in
AntibodyModelerProtocol
)
get()
(in
DisulfideMatchingDatabaseCAP
)
get()
(in
SetupPoissonBoltzmannPotentialCreatorAP
)
get_name()
(in
CDRsMinPackMin
)
get()
(in
DisulfideMatchingEnergyAP
)
get()
(in
SetupPoissonBoltzmannPotentialCreatorCAP
)
get_name()
(in
CloseOneCDRLoop
)
get()
(in
DisulfideMatchingEnergyCAP
)
get()
(in
AlterSpecDisruptionDriverAP
)
get_name()
(in
GraftCDRLoopsProtocol
)
get()
(in
DisulfideMatchingEnergyComponentsAP
)
get()
(in
AlterSpecDisruptionDriverCAP
)
get_name()
(in
GraftOneCDRLoop
)
get()
(in
DisulfideMatchingEnergyComponentsCAP
)
get()
(in
MutantAP
)
get_name()
(in
GraftedStemOptimizer
)
get()
(in
DisulfideMatchingEnergyContainerAP
)
get()
(in
MutantCAP
)
get_name()
(in
H3CterInsert
)
get()
(in
DisulfideMatchingEnergyContainerCAP
)
get()
(in
MutationDataAP
)
get_name()
(in
H3PerturbCCD
)
get()
(in
DisulfideMatchingEnergyCreatorAP
)
get()
(in
MutationDataCAP
)
get_name()
(in
H3RefineCCD
)
get()
(in
DisulfideMatchingEnergyCreatorCAP
)
get()
(in
PointMutScanDriverAP
)
get_name()
(in
LHRepulsiveRamp
)
get()
(in
DisulfideMatchingNeighborConstIteratorAP
)
get()
(in
PointMutScanDriverCAP
)
get_name()
(in
ModelCDRH3
)
get()
(in
DisulfideMatchingNeighborConstIteratorCAP
)
get()
(in
CClusterAP
)
get_name()
(in
RefineBetaBarrel
)
get()
(in
DisulfideMatchingNeighborIteratorAP
)
get()
(in
CClusterCAP
)
get_name()
(in
RefineOneCDRLoop
)
get()
(in
DisulfideMatchingNeighborIteratorCAP
)
get()
(in
CClusterSetAP
)
get_name()
(in
RefineOneCDRLoopCentroid
)
get()
(in
DisulfideMatchingPotentialAP
)
get()
(in
CClusterSetCAP
)
get_name()
(in
CDRDihedralConstraintMover
)
get()
(in
DisulfideMatchingPotentialCAP
)
get()
(in
ComparisonGridAP
)
get_name()
(in
ParatopeEpitopeSiteConstraintMover
)
get()
(in
FullatomDisulfideEnergyAP
)
get()
(in
ComparisonGridCAP
)
get_name()
(in
ParatopeSiteConstraintMover
)
get()
(in
FullatomDisulfideEnergyCAP
)
get()
(in
DarcParticleSwarmMinimizerAP
)
get_name()
(in
AntibodyDesignMover
)
get()
(in
FullatomDisulfideEnergyComponentsAP
)
get()
(in
DarcParticleSwarmMinimizerCAP
)
get_name()
(in
AntibodyDesignProtocol
)
get()
(in
FullatomDisulfideEnergyComponentsCAP
)
get()
(in
EggshellGridAP
)
get_name()
(in
MutateFrameworkForCluster
)
get()
(in
FullatomDisulfideEnergyContainerAP
)
get()
(in
EggshellGridCAP
)
get_name()
(in
AntibodyModeler
)
get()
(in
FullatomDisulfideEnergyContainerCAP
)
get()
(in
ElectrostaticpotentialGridAP
)
get_name()
(in
CDRH3Modeler
)
get()
(in
FullatomDisulfideEnergyCreatorAP
)
get()
(in
ElectrostaticpotentialGridCAP
)
get_name()
(in
CloseOneMover
)
get()
(in
FullatomDisulfideEnergyCreatorCAP
)
get()
(in
FingerprintBaseAP
)
get_name()
(in
GraftMover
)
get()
(in
FullatomDisulfideParams13AP
)
get()
(in
FingerprintBaseCAP
)
get_name()
(in
GraftOneMover
)
get()
(in
FullatomDisulfideParams13CAP
)
get()
(in
FingerprintMultifuncAP
)
get_name()
(in
LoopRlxMover
)
get()
(in
FullatomDisulfidePotentialAP
)
get()
(in
FingerprintMultifuncCAP
)
get_name()
(in
BackrubMover
)
get()
(in
FullatomDisulfidePotentialCAP
)
get()
(in
GenPharmacophoreAP
)
get_name()
(in
BackrubProtocol
)
get()
(in
NCaCaC_Dihedral_FuncAP
)
get()
(in
GenPharmacophoreCAP
)
get_name()
(in
BackrubSidechainMover
)
get()
(in
NCaCaC_Dihedral_FuncCAP
)
get()
(in
NonPlaidFingerprintAP
)
get_name()
(in
CanonicalSamplingMover
)
get()
(in
RT_helperAP
)
get()
(in
NonPlaidFingerprintCAP
)
get_name()
(in
DbTrajectoryRecorder
)
get()
(in
RT_helperCAP
)
get()
(in
PClusterAP
)
get_name()
(in
FixedTemperatureController
)
get()
(in
SGSG_Dihedral_FuncAP
)
get()
(in
PClusterCAP
)
get_name()
(in
HamiltonianExchange
)
get()
(in
SGSG_Dihedral_FuncCAP
)
get()
(in
PClusterSetAP
)
get_name()
(in
MetricRecorder
)
get()
(in
SG_Dist_FuncAP
)
get()
(in
PClusterSetCAP
)
get_name()
(in
MetropolisHastingsMover
)
get()
(in
SG_Dist_FuncCAP
)
get()
(in
PlaidFingerprintAP
)
get_name()
(in
PDBTrajectoryRecorder
)
get()
(in
BasePartnerAP
)
get()
(in
PlaidFingerprintCAP
)
get_name()
(in
ParallelTempering
)
get()
(in
BasePartnerCAP
)
get()
(in
PocketConstraintAP
)
get_name()
(in
ProgressBarObserver
)
get()
(in
DNABFormPotentialAP
)
get()
(in
PocketConstraintCAP
)
get_name()
(in
SidechainMetropolisHastingsMover
)
get()
(in
DNABFormPotentialCAP
)
get()
(in
PocketConstraintCreatorAP
)
get_name()
(in
SilentTrajectoryRecorder
)
get()
(in
DNAChiEnergyAP
)
get()
(in
PocketConstraintCreatorCAP
)
get_name()
(in
SimulatedTempering
)
get()
(in
DNAChiEnergyCAP
)
get()
(in
PocketExemplarMultifuncAP
)
get_name()
(in
TemperatureController
)
get()
(in
DNAChiEnergyCreatorAP
)
get()
(in
PocketExemplarMultifuncCAP
)
get_name()
(in
TemperingBase
)
get()
(in
DNAChiEnergyCreatorCAP
)
get()
(in
PocketGridAP
)
get_name()
(in
ThermodynamicMover
)
get()
(in
DNATorsionEnergyAP
)
get()
(in
PocketGridCAP
)
get_name()
(in
ThermodynamicObserver
)
get()
(in
DNATorsionEnergyCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_name()
(in
TrajectoryRecorder
)
get()
(in
DNATorsionEnergyCreatorAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_name()
(in
TrialCounterObserver
)
get()
(in
DNATorsionEnergyCreatorCAP
)
get()
(in
SmallMolAP
)
get_name()
(in
WTEBiasEnergy
)
get()
(in
DNATorsionPotentialAP
)
get()
(in
SmallMolCAP
)
get_name()
(in
AssignToClustersMover
)
get()
(in
DNATorsionPotentialCAP
)
get()
(in
TargetPocketGridAP
)
get_name()
(in
ClusterBase
)
get()
(in
DNA_BasePotentialAP
)
get()
(in
TargetPocketGridCAP
)
get_name()
(in
ClusterPhilStyle
)
get()
(in
DNA_BasePotentialCAP
)
get()
(in
UnionEdgeAP
)
get_name()
(in
ClusterPhilStyle_Loop
)
get()
(in
DirectReadoutPotentialAP
)
get()
(in
UnionEdgeCAP
)
get_name()
(in
ClusterPhilStyle_PoseReporter
)
get()
(in
DirectReadoutPotentialCAP
)
get()
(in
ray_distance_derivsAP
)
get_name()
(in
EnsembleConstraints
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
ray_distance_derivsCAP
)
get_name()
(in
EnsembleConstraints_Simple
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
spherical_coor_tripletAP
)
get_name()
(in
GatherPosesMover
)
get()
(in
TorsionFourierComponentAP
)
get()
(in
spherical_coor_tripletCAP
)
get_name()
(in
CoarseRNA_LoopCloser
)
get()
(in
TorsionFourierComponentCAP
)
get()
(in
triplet_and_originnumAP
)
get_name()
(in
ExtraThreadingMover
)
get()
(in
DsspAP
)
get()
(in
triplet_and_originnumCAP
)
get_name()
(in
LoopRelaxMover
)
get()
(in
DsspCAP
)
get()
(in
EnergyReporterAP
)
get_name()
(in
LoopRelaxThreadingMover
)
get()
(in
PairingAP
)
get()
(in
EnergyReporterCAP
)
get_name()
(in
MultiThreadingMover
)
get()
(in
PairingCAP
)
get()
(in
LogicalSelectorAP
)
get_name()
(in
PartialThreadingMover
)
get()
(in
StrandPairingAP
)
get()
(in
LogicalSelectorCAP
)
get_name()
(in
RecoverSideChainsMover
)
get()
(in
StrandPairingCAP
)
get()
(in
DockDesignFilterFactoryAP
)
get_name()
(in
StealLigandMover
)
get()
(in
StrandPairingSetAP
)
get()
(in
DockDesignFilterFactoryCAP
)
get_name()
(in
StealSideChainsMover
)
get()
(in
StrandPairingSetCAP
)
get()
(in
FavorNativeResidueAP
)
get_name()
(in
ThreadingMover
)
get()
(in
ElecAtomAP
)
get()
(in
FavorNativeResidueCAP
)
get_name()
(in
ContactMap
)
get()
(in
ElecAtomCAP
)
get()
(in
FavorNonNativeResidueAP
)
get_name()
(in
FitBfactorsMover
)
get()
(in
ElecGroupAP
)
get()
(in
FavorNonNativeResidueCAP
)
get_name()
(in
LoadDensityMapMover
)
get()
(in
ElecGroupCAP
)
get()
(in
ParserJobInputterAP
)
get_name()
(in
RecomputeDensityMapMover
)
get()
(in
FAElecContextDataAP
)
get()
(in
ParserJobInputterCAP
)
get_name()
(in
SetCrystWeightMover
)
get()
(in
FAElecContextDataCAP
)
get()
(in
ParserJobInputterCreatorAP
)
get_name()
(in
SetRefinementOptionsMover
)
get()
(in
FA_ElecEnergyAP
)
get()
(in
ParserJobInputterCreatorCAP
)
get_name()
(in
TagPoseWithRefinementStatsMover
)
get()
(in
FA_ElecEnergyAroAllAP
)
get()
(in
PatchdockReaderAP
)
get_name()
(in
UpdateSolventMover
)
get()
(in
FA_ElecEnergyAroAllCAP
)
get()
(in
PatchdockReaderCAP
)
get_name()
(in
CreateAngleConstraint
)
get()
(in
FA_ElecEnergyAroAllCreatorAP
)
get()
(in
ReportPSSMDifferencesAP
)
get_name()
(in
CreateDistanceConstraint
)
get()
(in
FA_ElecEnergyAroAllCreatorCAP
)
get()
(in
ReportPSSMDifferencesCAP
)
get_name()
(in
CreateTorsionConstraint
)
get()
(in
FA_ElecEnergyAroAroAP
)
get()
(in
ReportSequenceDifferencesAP
)
get_name()
(in
DeclareBond
)
get()
(in
FA_ElecEnergyAroAroCAP
)
get()
(in
ReportSequenceDifferencesCAP
)
get_name()
(in
PeptideStubMover
)
get()
(in
FA_ElecEnergyAroAroCreatorAP
)
get()
(in
RevertAP
)
get_name()
(in
ddGMover
)
get()
(in
FA_ElecEnergyAroAroCreatorCAP
)
get()
(in
RevertCAP
)
get_name()
(in
ExposedHydrophobicsFilter
)
get()
(in
FA_ElecEnergyCAP
)
get()
(in
TransformationAP
)
get_name()
(in
GreedyOptMutationMover
)
get()
(in
FA_ElecEnergyCreatorAP
)
get()
(in
TransformationCAP
)
get_name()
(in
ParetoOptMutationMover
)
get()
(in
FA_ElecEnergyCreatorCAP
)
get()
(in
AtomicContactCountFilterAP
)
get_name()
(in
DesignProteinBackboneAroundDNA
)
get()
(in
FA_GrpElecEnergyAP
)
get()
(in
AtomicContactCountFilterCAP
)
get_name()
(in
DnaInterfaceMinMover
)
get()
(in
FA_GrpElecEnergyCAP
)
get()
(in
AtomicContactCountFilterCreatorAP
)
get_name()
(in
DnaInterfaceMultiStateDesign
)
get()
(in
FA_GrpElecEnergyCreatorAP
)
get()
(in
AtomicContactCountFilterCreatorCAP
)
get_name()
(in
DnaInterfacePacker
)
get()
(in
FA_GrpElecEnergyCreatorCAP
)
get()
(in
AverageDegreeFilterAP
)
get_name()
(in
SeparateDnaFromNonDna
)
get()
(in
GroupElecAP
)
get()
(in
AverageDegreeFilterCAP
)
get_name()
(in
ConformerSwitchMover
)
get()
(in
GroupElecCAP
)
get()
(in
AverageDegreeFilterCreatorAP
)
get_name()
(in
DockMCMCycle
)
get()
(in
RNA_FA_ElecEnergyAP
)
get()
(in
AverageDegreeFilterCreatorCAP
)
get_name()
(in
DockMCMProtocol
)
get()
(in
RNA_FA_ElecEnergyCAP
)
get()
(in
BindingStrainFilterAP
)
get_name()
(in
DockMinMover
)
get()
(in
RNA_FA_ElecEnergyCreatorAP
)
get()
(in
BindingStrainFilterCAP
)
get_name()
(in
DockSetupMover
)
get()
(in
RNA_FA_ElecEnergyCreatorCAP
)
get()
(in
BindingStrainFilterCreatorAP
)
get_name()
(in
DockingEnsemblePrepackProtocol
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
BindingStrainFilterCreatorCAP
)
get_name()
(in
DockingHighRes
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
BoltzmannFilterAP
)
get_name()
(in
DockingHighResLegacy
)
get()
(in
weight_tripleAP
)
get()
(in
BoltzmannFilterCAP
)
get_name()
(in
DockingInitialPerturbation
)
get()
(in
weight_tripleCAP
)
get()
(in
BoltzmannFilterCreatorAP
)
get_name()
(in
DockingLowRes
)
get()
(in
ElecDensAllAtomCenEnergyAP
)
get()
(in
BoltzmannFilterCreatorCAP
)
get_name()
(in
DockingLowResEnsemble
)
get()
(in
ElecDensAllAtomCenEnergyCAP
)
get()
(in
ClashWithTargetFilterAP
)
get_name()
(in
DockingPrepackProtocol
)
get()
(in
ElecDensAllAtomCenEnergyCreatorAP
)
get()
(in
ClashWithTargetFilterCAP
)
get_name()
(in
DockingProtocol
)
get()
(in
ElecDensAllAtomCenEnergyCreatorCAP
)
get()
(in
ClashWithTargetFilterCreatorAP
)
get_name()
(in
DockingSlideIntoContact
)
get()
(in
ElecDensCenEnergyAP
)
get()
(in
ClashWithTargetFilterCreatorCAP
)
get_name()
(in
EllipsoidalRandomizationMover
)
get()
(in
ElecDensCenEnergyCAP
)
get()
(in
DesignableResiduesFilterAP
)
get_name()
(in
FaDockingSlideIntoContact
)
get()
(in
ElecDensCenEnergyCreatorAP
)
get()
(in
DesignableResiduesFilterCAP
)
get_name()
(in
InterfaceSidechainMinMover
)
get()
(in
ElecDensCenEnergyCreatorCAP
)
get()
(in
DesignableResiduesFilterCreatorAP
)
get_name()
(in
SidechainMinMover
)
get()
(in
ElecDensEnergyAP
)
get()
(in
DesignableResiduesFilterCreatorCAP
)
get_name()
(in
TemperedDocking
)
get()
(in
ElecDensEnergyCAP
)
get()
(in
DisulfideFilterAP
)
get_name()
(in
MPDockingMover
)
get()
(in
ElecDensEnergyCreatorAP
)
get()
(in
DisulfideFilterCAP
)
get_name()
(in
MPDockingSetupMover
)
get()
(in
ElecDensEnergyCreatorCAP
)
get()
(in
DisulfideFilterCreatorAP
)
get_name()
(in
SaneDockingProtocol
)
get()
(in
ElectronDensity
)
get()
(in
DisulfideFilterCreatorCAP
)
get_name()
(in
AddAssemblyConstraints
)
get()
(in
ElectronDensityAP
)
get()
(in
FNatFilterAP
)
get_name()
(in
AssembleLinkerMover
)
get()
(in
ElectronDensityCAP
)
get()
(in
FNatFilterCAP
)
get_name()
(in
CombineChainsMover
)
get()
(in
ElectronDensityLoaderAP
)
get()
(in
FNatFilterCreatorAP
)
get_name()
(in
PostDockAssemblyScorer
)
get()
(in
ElectronDensityLoaderCAP
)
get()
(in
FNatFilterCreatorCAP
)
get_name()
(in
BfactorFittingMover
)
get()
(in
ElectronDensityLoaderCreatorAP
)
get()
(in
FilterScanFilterAP
)
get_name()
(in
DensityMorphingMover
)
get()
(in
ElectronDensityLoaderCreatorCAP
)
get()
(in
FilterScanFilterCAP
)
get_name()
(in
ReportFSC
)
get()
(in
ElectronDensityOptionsAP
)
get()
(in
FilterScanFilterCreatorAP
)
get_name()
(in
ScaleMapIntensities
)
get()
(in
ElectronDensityOptionsCAP
)
get()
(in
FilterScanFilterCreatorCAP
)
get_name()
(in
SetupForDensityScoringMover
)
get()
(in
ElectronDensityOptionsCreatorAP
)
get()
(in
HbondsToAtomFilterAP
)
get_name()
(in
ClientMover
)
get()
(in
ElectronDensityOptionsCreatorCAP
)
get()
(in
HbondsToAtomFilterCAP
)
get_name()
(in
CoMTrackerCM
)
get()
(in
FastDensEnergyAP
)
get()
(in
HbondsToAtomFilterCreatorAP
)
get_name()
(in
EnvMover
)
get()
(in
FastDensEnergyCAP
)
get()
(in
HbondsToAtomFilterCreatorCAP
)
get_name()
(in
ScriptCM
)
get()
(in
FastDensEnergyCreatorAP
)
get()
(in
HbondsToResidueFilterAP
)
get_name()
(in
EnvLabelSelector
)
get()
(in
FastDensEnergyCreatorCAP
)
get()
(in
HbondsToResidueFilterCAP
)
get_name()
(in
MultipleDomainMover
)
get()
(in
KromerMannAP
)
get()
(in
HbondsToResidueFilterCreatorAP
)
get_name()
(in
RNA_DeNovoProtocol
)
get()
(in
KromerMannCAP
)
get()
(in
HbondsToResidueFilterCreatorCAP
)
get_name()
(in
RNA_FragmentMover
)
get()
(in
OneGaussianScatteringAP
)
get()
(in
IRmsdFilterAP
)
get_name()
(in
RNA_LoopCloser
)
get()
(in
OneGaussianScatteringCAP
)
get()
(in
IRmsdFilterCAP
)
get_name()
(in
RNA_Minimizer
)
get()
(in
PattersonCorrEnergyAP
)
get()
(in
IRmsdFilterCreatorAP
)
get_name()
(in
RNA_Relaxer
)
get()
(in
PattersonCorrEnergyCAP
)
get()
(in
IRmsdFilterCreatorCAP
)
get_name()
(in
ReportToDB
)
get()
(in
PattersonCorrEnergyCreatorAP
)
get()
(in
InterfaceHolesFilterAP
)
get_name()
(in
TrajectoryReportToDB
)
get()
(in
PattersonCorrEnergyCreatorCAP
)
get()
(in
InterfaceHolesFilterCAP
)
get_name()
(in
SetupForFibrilMover
)
get()
(in
poseCoordAP
)
get()
(in
InterfaceHolesFilterCreatorAP
)
get_name()
(in
BluePrintBDR
)
get()
(in
poseCoordCAP
)
get()
(in
InterfaceHolesFilterCreatorCAP
)
get_name()
(in
CircularPermutation
)
get()
(in
ElecDensAtomwiseEnergyAP
)
get()
(in
LRmsdFilterAP
)
get_name()
(in
MatchResiduesMover
)
get()
(in
ElecDensAtomwiseEnergyCAP
)
get()
(in
LRmsdFilterCAP
)
get_name()
(in
SheetConstraintsRCG
)
get()
(in
ElecDensAtomwiseEnergyCreatorAP
)
get()
(in
LRmsdFilterCreatorAP
)
get_name()
(in
SetAACompositionPotential
)
get()
(in
ElecDensAtomwiseEnergyCreatorCAP
)
get()
(in
LRmsdFilterCreatorCAP
)
get_name()
(in
SetSecStructEnergies
)
get()
(in
ElectronDensityAtomwiseAP
)
get()
(in
RelativeSegmentFilterAP
)
get_name()
(in
FlexPacker
)
get()
(in
ElectronDensityAtomwiseCAP
)
get()
(in
RelativeSegmentFilterCAP
)
get_name()
(in
FlexPepDockingAbInitio
)
get()
(in
AnalyticEtableEnergyAP
)
get()
(in
RelativeSegmentFilterCreatorAP
)
get_name()
(in
FlexPepDockingLowRes
)
get()
(in
AnalyticEtableEnergyCAP
)
get()
(in
RelativeSegmentFilterCreatorCAP
)
get_name()
(in
FlexPepDockingProtocol
)
get()
(in
AnalyticEtableEvaluatorAP
)
get()
(in
RmsdFilterAP
)
get_name()
(in
FloppyTailMover
)
get()
(in
AnalyticEtableEvaluatorCAP
)
get()
(in
RmsdFilterCAP
)
get_name()
(in
FlxbbDesign
)
get()
(in
AtomPairEnergyAP
)
get()
(in
RmsdFilterCreatorAP
)
get_name()
(in
FlxbbDesignPack
)
get()
(in
AtomPairEnergyCAP
)
get()
(in
RmsdFilterCreatorCAP
)
get_name()
(in
InterlockAroma
)
get()
(in
BaseEtableEnergy_T_core_scoring_etable_AnalyticEtableEnergy_TAP
)
get()
(in
RmsdSimpleFilterAP
)
get_name()
(in
BDR
)
get()
(in
BaseEtableEnergy_T_core_scoring_etable_AnalyticEtableEnergy_TCAP
)
get()
(in
RmsdSimpleFilterCAP
)
get_name()
(in
VarLengthBuild
)
get()
(in
BaseEtableEnergy_T_core_scoring_etable_TableLookupEtableEnergy_TAP
)
get()
(in
RmsdSimpleFilterCreatorAP
)
get_name()
(in
RemodelConstraintGenerator
)
get()
(in
BaseEtableEnergy_T_core_scoring_etable_TableLookupEtableEnergy_TCAP
)
get()
(in
RmsdSimpleFilterCreatorCAP
)
get_name()
(in
NonlocalFrags
)
get()
(in
CubicPolynomialAP
)
get()
(in
SSamountFilterAP
)
get_name()
(in
TorsionFragmentMover
)
get()
(in
CubicPolynomialCAP
)
get()
(in
SSamountFilterCAP
)
get_name()
(in
GeneralizedKIC
)
get()
(in
EtableAP
)
get()
(in
SSamountFilterCreatorAP
)
get_name()
(in
GeneralizedKICfilter
)
get()
(in
EtableCAP
)
get()
(in
SSamountFilterCreatorCAP
)
get_name()
(in
GeneralizedKICperturber
)
get()
(in
EtableClassicIntraEnergyCreatorAP
)
get()
(in
SequenceRecoveryFilterAP
)
get_name()
(in
GeneralizedKICselector
)
get()
(in
EtableClassicIntraEnergyCreatorCAP
)
get()
(in
SequenceRecoveryFilterCAP
)
get_name()
(in
AnchoredGraftMover
)
get()
(in
EtableEnergyCreatorAP
)
get()
(in
SequenceRecoveryFilterCreatorAP
)
get_name()
(in
CCDEndsGraftMover
)
get()
(in
EtableEnergyCreatorCAP
)
get()
(in
SequenceRecoveryFilterCreatorCAP
)
get_name()
(in
GraftMoverBase
)
get()
(in
EtableEvaluatorAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_name()
(in
DeleteRegionMover
)
get()
(in
EtableEvaluatorCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_name()
(in
InsertPoseIntoPoseMover
)
get()
(in
EtableOptionsAP
)
get()
(in
SpecificResiduesNearInterfaceFilterAP
)
get_name()
(in
KeepRegionMover
)
get()
(in
EtableOptionsCAP
)
get()
(in
SpecificResiduesNearInterfaceFilterCAP
)
get_name()
(in
ReplaceRegionMover
)
get()
(in
EtableParamsOnePairAP
)
get()
(in
SpecificResiduesNearInterfaceFilterCreatorAP
)
get_name()
(in
BackboneGridSampler
)
get()
(in
EtableParamsOnePairCAP
)
get()
(in
SpecificResiduesNearInterfaceFilterCreatorCAP
)
get_name()
(in
BundleGridSampler
)
get()
(in
ExtraQuadraticRepulsionAP
)
get()
(in
StubScoreFilterAP
)
get_name()
(in
FitSimpleHelix
)
get()
(in
ExtraQuadraticRepulsionCAP
)
get()
(in
StubScoreFilterCAP
)
get_name()
(in
MakeBundle
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
StubScoreFilterCreatorAP
)
get_name()
(in
MakeBundleHelix
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
StubScoreFilterCreatorCAP
)
get_name()
(in
PerturbBundle
)
get()
(in
SplineParametersAP
)
get()
(in
StubScoreLoopsFilterAP
)
get_name()
(in
PerturbBundleHelix
)
get()
(in
SplineParametersCAP
)
get()
(in
StubScoreLoopsFilterCAP
)
get_name()
(in
PlaceSurfaceProbe
)
get()
(in
TableLookupEtableEnergyAP
)
get()
(in
StubScoreLoopsFilterCreatorAP
)
get_name()
(in
BackboneTorsionPerturbation
)
get()
(in
TableLookupEtableEnergyCAP
)
get()
(in
StubScoreLoopsFilterCreatorCAP
)
get_name()
(in
BackboneTorsionSampler
)
get()
(in
TableLookupEvaluatorAP
)
get()
(in
TorsionAP
)
get_name()
(in
CartesianHybridize
)
get()
(in
TableLookupEvaluatorCAP
)
get()
(in
TorsionCAP
)
get_name()
(in
CartesianSampler
)
get()
(in
CoulombAP
)
get()
(in
TorsionCreatorAP
)
get_name()
(in
ChunkTrialMover
)
get()
(in
CoulombCAP
)
get()
(in
TorsionCreatorCAP
)
get_name()
(in
DomainAssembly
)
get()
(in
CountPairAllAP
)
get()
(in
AddChainBreakAP
)
get_name()
(in
FoldTreeHybridize
)
get()
(in
CountPairAllCAP
)
get()
(in
AddChainBreakCAP
)
get_name()
(in
HybridizeProtocol
)
get()
(in
CountPairCrossover3AP
)
get()
(in
AddChainBreakCreatorAP
)
get_name()
(in
InsertChunkMover
)
get()
(in
CountPairCrossover3CAP
)
get()
(in
AddChainBreakCreatorCAP
)
get_name()
(in
MRMover
)
get()
(in
CountPairCrossover4AP
)
get()
(in
AddSidechainConstraintsToHotspotsAP
)
get_name()
(in
WeightedFragmentSmoothTrialMover
)
get()
(in
CountPairCrossover4CAP
)
get()
(in
AddSidechainConstraintsToHotspotsCAP
)
get_name()
(in
WeightedFragmentTrialMover
)
get()
(in
CountPairFactoryAP
)
get()
(in
AddSidechainConstraintsToHotspotsCreatorAP
)
get_name()
(in
IdealizeMover
)
get()
(in
CountPairFactoryCAP
)
get()
(in
AddSidechainConstraintsToHotspotsCreatorCAP
)
get_name()
(in
BalancedKicMover
)
get()
(in
CountPairFunctionAP
)
get()
(in
BackrubDDMoverAP
)
get_name()
(in
KicMover
)
get()
(in
CountPairFunctionCAP
)
get()
(in
BackrubDDMoverCAP
)
get_name()
(in
BondAnglePerturber
)
get()
(in
CountPairGenericAP
)
get()
(in
BackrubDDMoverCreatorAP
)
get_name()
(in
FragmentPerturber
)
get()
(in
CountPairGenericCAP
)
get()
(in
BackrubDDMoverCreatorCAP
)
get_name()
(in
IdealizeNonPhiPsi
)
get()
(in
CountPairNoneAP
)
get()
(in
BestHotspotCstMoverAP
)
get_name()
(in
LogFilePerturber
)
get()
(in
CountPairNoneCAP
)
get()
(in
BestHotspotCstMoverCAP
)
get_name()
(in
OmegaPerturber
)
get()
(in
InvokerAP
)
get()
(in
BestHotspotCstMoverCreatorAP
)
get_name()
(in
Perturber
)
get()
(in
InvokerCAP
)
get()
(in
BestHotspotCstMoverCreatorCAP
)
get_name()
(in
PerturberSet
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
BuildAlaPoseAP
)
get_name()
(in
Rama2bPerturber
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
BuildAlaPoseCAP
)
get_name()
(in
RamaPerturber
)
get()
(in
CountPairDataGenericAP
)
get()
(in
BuildAlaPoseCreatorAP
)
get_name()
(in
UniformPerturber
)
get()
(in
CountPairDataGenericCAP
)
get()
(in
BuildAlaPoseCreatorCAP
)
get_name()
(in
VicinityPerturber
)
get()
(in
CountPairData_1_1AP
)
get()
(in
DesignMinimizeHbondsAP
)
get_name()
(in
WalkingBondAnglePerturber
)
get()
(in
CountPairData_1_1CAP
)
get()
(in
DesignMinimizeHbondsCAP
)
get_name()
(in
WalkingPerturber
)
get()
(in
CountPairData_1_2AP
)
get()
(in
DesignMinimizeHbondsCreatorAP
)
get_name()
(in
EndToEndPivots
)
get()
(in
CountPairData_1_2CAP
)
get()
(in
DesignMinimizeHbondsCreatorCAP
)
get_name()
(in
FixedOffsetPivots
)
get()
(in
CountPairData_1_3AP
)
get()
(in
DisulfideMoverAP
)
get_name()
(in
FixedPivots
)
get()
(in
CountPairData_1_3CAP
)
get()
(in
DisulfideMoverCAP
)
get_name()
(in
LoopPivots
)
get()
(in
EtableAtomAP
)
get()
(in
DisulfideMoverCreatorAP
)
get_name()
(in
PivotPicker
)
get()
(in
EtableAtomCAP
)
get()
(in
DisulfideMoverCreatorCAP
)
get_name()
(in
StandardPivots
)
get()
(in
GenericResidueConnectionDataAP
)
get()
(in
DockAndRetrieveSidechainsAP
)
get_name()
(in
AddHydrogen
)
get()
(in
GenericResidueConnectionDataCAP
)
get()
(in
DockAndRetrieveSidechainsCAP
)
get_name()
(in
AddHydrogens
)
get()
(in
TrieCountPair1BC3AP
)
get()
(in
DockAndRetrieveSidechainsCreatorAP
)
get_name()
(in
CompoundTranslate
)
get()
(in
TrieCountPair1BC3CAP
)
get()
(in
DockAndRetrieveSidechainsCreatorCAP
)
get_name()
(in
ComputeLigandRDF
)
get()
(in
TrieCountPair1BC4AP
)
get()
(in
DockWithHotspotMoverAP
)
get_name()
(in
FinalMinimizer
)
get()
(in
TrieCountPair1BC4CAP
)
get()
(in
DockWithHotspotMoverCAP
)
get_name()
(in
GrowLigand
)
get()
(in
TrieCountPairAllAP
)
get()
(in
DockWithHotspotMoverCreatorAP
)
get_name()
(in
HighResDocker
)
get()
(in
TrieCountPairAllCAP
)
get()
(in
DockWithHotspotMoverCreatorCAP
)
get_name()
(in
InterfaceScoreCalculator
)
get()
(in
TrieCountPairGenericAP
)
get()
(in
FavorNativeResiduePreCycleAP
)
get_name()
(in
LigandBaseProtocol
)
get()
(in
TrieCountPairGenericCAP
)
get()
(in
FavorNativeResiduePreCycleCAP
)
get_name()
(in
LigandDesign
)
get()
(in
TrieCountPairNoneAP
)
get()
(in
FavorNativeResiduePreCycleCreatorAP
)
get_name()
(in
LigandDockProtocol
)
get()
(in
TrieCountPairNoneCAP
)
get()
(in
FavorNativeResiduePreCycleCreatorCAP
)
get_name()
(in
MinimizeBackbone
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
FavorNonNativeResiduePreCycleAP
)
get_name()
(in
MinimizeLigand
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
FavorNonNativeResiduePreCycleCAP
)
get_name()
(in
RandomConformerMover
)
get()
(in
CentroidScatterAP
)
get()
(in
FavorNonNativeResiduePreCycleCreatorAP
)
get_name()
(in
RandomConformers
)
get()
(in
CentroidScatterCAP
)
get()
(in
FavorNonNativeResiduePreCycleCreatorCAP
)
get_name()
(in
RigidSearchMover
)
get()
(in
FAScatterAP
)
get()
(in
HotspotDisjointedFoldTreeMoverAP
)
get_name()
(in
Rotate
)
get()
(in
FAScatterCAP
)
get()
(in
HotspotDisjointedFoldTreeMoverCAP
)
get_name()
(in
Rotates
)
get()
(in
FiberDiffractionAP
)
get()
(in
HotspotDisjointedFoldTreeMoverCreatorAP
)
get_name()
(in
SlideTogether
)
get()
(in
FiberDiffractionCAP
)
get()
(in
HotspotDisjointedFoldTreeMoverCreatorCAP
)
get_name()
(in
StartFrom
)
get()
(in
FiberDiffractionEnergyAP
)
get()
(in
HotspotHasherMoverAP
)
get_name()
(in
TetherLigand
)
get()
(in
FiberDiffractionEnergyCAP
)
get()
(in
HotspotHasherMoverCAP
)
get_name()
(in
Transform
)
get()
(in
FiberDiffractionEnergyCreatorAP
)
get()
(in
HotspotHasherMoverCreatorAP
)
get_name()
(in
Translate
)
get()
(in
FiberDiffractionEnergyCreatorCAP
)
get()
(in
HotspotHasherMoverCreatorCAP
)
get_name()
(in
UnconstrainedTorsionsMover
)
get()
(in
FiberDiffractionEnergyDensAP
)
get()
(in
InterfaceRecapitulationMoverAP
)
get_name()
(in
WriteLigandMolFile
)
get()
(in
FiberDiffractionEnergyDensCAP
)
get()
(in
InterfaceRecapitulationMoverCAP
)
get_name()
(in
LoopBuildMover
)
get()
(in
FiberDiffractionEnergyDensCreatorAP
)
get()
(in
InterfaceRecapitulationMoverCreatorAP
)
get_name()
(in
LoopMover_SlidingWindow
)
get()
(in
FiberDiffractionEnergyDensCreatorCAP
)
get()
(in
InterfaceRecapitulationMoverCreatorCAP
)
get_name()
(in
LoopmodelWrapper
)
get()
(in
FiberDiffractionLoaderAP
)
get()
(in
LoopFinderAP
)
get_name()
(in
LoopBuilder
)
get()
(in
FiberDiffractionLoaderCAP
)
get()
(in
LoopFinderCAP
)
get_name()
(in
LoopModeler
)
get()
(in
FiberDiffractionLoaderCreatorAP
)
get()
(in
LoopFinderCreatorAP
)
get_name()
(in
LoopMover
)
get()
(in
FiberDiffractionLoaderCreatorCAP
)
get()
(in
LoopFinderCreatorCAP
)
get_name()
(in
LoopProtocol
)
get()
(in
FiberDiffractionOptionsAP
)
get()
(in
LoopLengthChangeAP
)
get_name()
(in
MinimizationRefiner
)
get()
(in
FiberDiffractionOptionsCAP
)
get()
(in
LoopLengthChangeCAP
)
get_name()
(in
RepackingRefiner
)
get()
(in
FiberDiffractionOptionsCreatorAP
)
get()
(in
LoopLengthChangeCreatorAP
)
get_name()
(in
RotamerTrialsRefiner
)
get()
(in
FiberDiffractionOptionsCreatorCAP
)
get()
(in
LoopLengthChangeCreatorCAP
)
get_name()
(in
LegacyKicSampler
)
get()
(in
HankelAP
)
get()
(in
LoopMoverFromCommandLineAP
)
get_name()
(in
AcceptanceCheck
)
get()
(in
HankelCAP
)
get()
(in
LoopMoverFromCommandLineCAP
)
get_name()
(in
LoopFilter
)
get()
(in
KromerMannAP
)
get()
(in
LoopMoverFromCommandLineCreatorAP
)
get_name()
(in
LoopMoverGroup
)
get()
(in
KromerMannCAP
)
get()
(in
LoopMoverFromCommandLineCreatorCAP
)
get_name()
(in
PrepareForCentroid
)
get()
(in
OneGaussianScatteringAP
)
get()
(in
LoopOverAP
)
get_name()
(in
PrepareForFullatom
)
get()
(in
OneGaussianScatteringCAP
)
get()
(in
LoopOverCAP
)
get_name()
(in
FastGapMover
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
LoopOverCreatorAP
)
get_name()
(in
LoopHashDiversifier
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
LoopOverCreatorCAP
)
get_name()
(in
LoopHashLibrary
)
get()
(in
AmberPeriodicFuncAP
)
get()
(in
LoopRemodelAP
)
get_name()
(in
LoopHashMoverWrapper
)
get()
(in
AmberPeriodicFuncCAP
)
get()
(in
LoopRemodelCAP
)
get_name()
(in
LoopHashRelaxProtocol
)
get()
(in
CharmmPeriodicFuncAP
)
get()
(in
LoopRemodelCreatorAP
)
get_name()
(in
Mover_LoopHashRefine
)
get()
(in
CharmmPeriodicFuncCAP
)
get()
(in
LoopRemodelCreatorCAP
)
get_name()
(in
FoldTreeFromLoops
)
get()
(in
CircularGeneral1D_FuncAP
)
get()
(in
MapHotspotAP
)
get_name()
(in
CCDLoopClosureMover
)
get()
(in
CircularGeneral1D_FuncCAP
)
get()
(in
MapHotspotCAP
)
get_name()
(in
FASelectSlidingWindowLoopClosure
)
get()
(in
CircularHarmonicFuncAP
)
get()
(in
MapHotspotCreatorAP
)
get_name()
(in
SlidingWindowLoopClosure
)
get()
(in
CircularHarmonicFuncCAP
)
get()
(in
MapHotspotCreatorCAP
)
get_name()
(in
WidthFirstSlidingWindowLoopClosure
)
get()
(in
CircularPowerFuncAP
)
get()
(in
PatchdockTransformAP
)
get_name()
(in
KinematicMover
)
get()
(in
CircularPowerFuncCAP
)
get()
(in
PatchdockTransformCAP
)
get_name()
(in
KinematicWrapper
)
get()
(in
CircularSigmoidalFuncAP
)
get()
(in
PatchdockTransformCreatorAP
)
get_name()
(in
IndependentLoopMover
)
get()
(in
CircularSigmoidalFuncCAP
)
get()
(in
PatchdockTransformCreatorCAP
)
get_name()
(in
LoopCM
)
get()
(in
CircularSplineFuncAP
)
get()
(in
PeptideStapleDesignMoverAP
)
get_name()
(in
LoopMover
)
get()
(in
CircularSplineFuncCAP
)
get()
(in
PeptideStapleDesignMoverCAP
)
get_name()
(in
LoopMover_Perturb_CCD
)
get()
(in
ConformationXYZAP
)
get()
(in
PeptideStapleDesignMoverCreatorAP
)
get_name()
(in
LoopMover_Perturb_KIC
)
get()
(in
ConformationXYZCAP
)
get()
(in
PeptideStapleDesignMoverCreatorCAP
)
get_name()
(in
LoopMover_Perturb_QuickCCD
)
get()
(in
ConstantFuncAP
)
get()
(in
PlaceOnLoopAP
)
get_name()
(in
LoopMover_Perturb_QuickCCD_Moves
)
get()
(in
ConstantFuncCAP
)
get()
(in
PlaceOnLoopCAP
)
get_name()
(in
LoopMover_Refine_Backrub
)
get()
(in
CountViolFuncAP
)
get()
(in
PlaceOnLoopCreatorAP
)
get_name()
(in
LoopMover_Refine_CCD
)
get()
(in
CountViolFuncCAP
)
get()
(in
PlaceOnLoopCreatorCAP
)
get_name()
(in
LoopMover_Refine_KIC
)
get()
(in
EtableFuncAP
)
get()
(in
PlaceSimultaneouslyMoverAP
)
get_name()
(in
LoopRefineInnerCycle
)
get()
(in
EtableFuncCAP
)
get()
(in
PlaceSimultaneouslyMoverCAP
)
get_name()
(in
LoopRefineInnerCycleContainer
)
get()
(in
FadeFuncAP
)
get()
(in
PlaceSimultaneouslyMoverCreatorAP
)
get_name()
(in
RepackTrial
)
get()
(in
FadeFuncCAP
)
get()
(in
PlaceSimultaneouslyMoverCreatorCAP
)
get_name()
(in
ShearMinCCDTrial
)
get()
(in
FlatHarmonicFuncAP
)
get()
(in
PlaceStubMoverAP
)
get_name()
(in
SmallMinCCDTrial
)
get()
(in
FlatHarmonicFuncCAP
)
get()
(in
PlaceStubMoverCAP
)
get_name()
(in
MakeRotLibMover
)
get()
(in
FourPointsFuncAP
)
get()
(in
PlaceStubMoverCreatorAP
)
get_name()
(in
MakeRotLibOptionsData
)
get()
(in
FourPointsFuncCAP
)
get()
(in
PlaceStubMoverCreatorCAP
)
get_name()
(in
MatcherMover
)
get()
(in
FuncAP
)
get()
(in
PlacementAuctionMoverAP
)
get_name()
(in
ExtractSubposeMover
)
get()
(in
FuncCAP
)
get()
(in
PlacementAuctionMoverCAP
)
get_name()
(in
MatDesGreedyOptMutationMover
)
get()
(in
FuncFactoryAP
)
get()
(in
PlacementAuctionMoverCreatorAP
)
get_name()
(in
SchemePlaceMotifsMover
)
get()
(in
FuncFactoryCAP
)
get()
(in
PlacementAuctionMoverCreatorCAP
)
get_name()
(in
SymDofMover
)
get()
(in
GaussianChainDoubleFuncAP
)
get()
(in
PlacementMinimizationMoverAP
)
get_name()
(in
CartesianMD
)
get()
(in
GaussianChainDoubleFuncCAP
)
get()
(in
PlacementMinimizationMoverCAP
)
get_name()
(in
MDBase
)
get()
(in
GaussianChainFuncAP
)
get()
(in
PlacementMinimizationMoverCreatorAP
)
get_name()
(in
MedalExchangeMover
)
get()
(in
GaussianChainFuncCAP
)
get()
(in
PlacementMinimizationMoverCreatorCAP
)
get_name()
(in
MedalMover
)
get()
(in
GaussianChainQuadrupleFuncAP
)
get()
(in
PrepackMoverAP
)
get_name()
(in
AddMPLigandMover
)
get()
(in
GaussianChainQuadrupleFuncCAP
)
get()
(in
PrepackMoverCAP
)
get_name()
(in
AddMembraneMover
)
get()
(in
GaussianChainSingleFuncAP
)
get()
(in
PrepackMoverCreatorAP
)
get_name()
(in
FlipMover
)
get()
(in
GaussianChainSingleFuncCAP
)
get()
(in
PrepackMoverCreatorCAP
)
get_name()
(in
MembranePositionFromTopologyMover
)
get()
(in
GaussianChainTripleFuncAP
)
get()
(in
ProteinInterfaceMultiStateDesignMoverAP
)
get_name()
(in
RandomPositionRotationMover
)
get()
(in
GaussianChainTripleFuncCAP
)
get()
(in
ProteinInterfaceMultiStateDesignMoverCAP
)
get_name()
(in
RandomPositionTranslationMover
)
get()
(in
GaussianFuncAP
)
get()
(in
ProteinInterfaceMultiStateDesignMoverCreatorAP
)
get_name()
(in
RotationMover
)
get()
(in
GaussianFuncCAP
)
get()
(in
ProteinInterfaceMultiStateDesignMoverCreatorCAP
)
get_name()
(in
SetMembraneCenterMover
)
get()
(in
HarmonicFuncAP
)
get()
(in
RandomMutationAP
)
get_name()
(in
SetMembraneNormalMover
)
get()
(in
HarmonicFuncCAP
)
get()
(in
RandomMutationCAP
)
get_name()
(in
SetMembranePositionMover
)
get()
(in
IdentityFuncAP
)
get()
(in
RandomMutationCreatorAP
)
get_name()
(in
TransformIntoMembraneMover
)
get()
(in
IdentityFuncCAP
)
get()
(in
RandomMutationCreatorCAP
)
get_name()
(in
TranslationMover
)
get()
(in
KarplusFuncAP
)
get()
(in
RepackMinimizeAP
)
get_name()
(in
TranslationRotationMover
)
get()
(in
KarplusFuncCAP
)
get()
(in
RepackMinimizeCAP
)
get_name()
(in
SymmetricAddMembraneMover
)
get()
(in
LinearPenaltyFunctionAP
)
get()
(in
RepackMinimizeCreatorAP
)
get_name()
(in
VisualizeEmbeddingMover
)
get()
(in
LinearPenaltyFunctionCAP
)
get()
(in
RepackMinimizeCreatorCAP
)
get_name()
(in
VisualizeMembraneMover
)
get()
(in
MinMultiHarmonicFuncAP
)
get()
(in
SaveAndRetrieveSidechainsAP
)
get_name()
(in
ZincHeterodimerMover
)
get()
(in
MinMultiHarmonicFuncCAP
)
get()
(in
SaveAndRetrieveSidechainsCAP
)
get_name()
(in
MotifGraftMover
)
get()
(in
MixtureFuncAP
)
get()
(in
SaveAndRetrieveSidechainsCreatorAP
)
get_name()
(in
MotifDnaPacker
)
get()
(in
MixtureFuncCAP
)
get()
(in
SaveAndRetrieveSidechainsCreatorCAP
)
get_name()
(in
CompositionMover
)
get()
(in
PeriodicFuncAP
)
get()
(in
SetAtomTreeAP
)
get_name()
(in
CycleMover
)
get()
(in
PeriodicFuncCAP
)
get()
(in
SetAtomTreeCAP
)
get_name()
(in
CyclicMover
)
get()
(in
ResiduePairXYZAP
)
get()
(in
SetAtomTreeCreatorAP
)
get_name()
(in
DsspMover
)
get()
(in
ResiduePairXYZCAP
)
get()
(in
SetAtomTreeCreatorCAP
)
get_name()
(in
FilterMover
)
get()
(in
ResidueXYZAP
)
get()
(in
SetTemperatureFactorAP
)
get_name()
(in
FilterReporterMover
)
get()
(in
ResidueXYZCAP
)
get()
(in
SetTemperatureFactorCAP
)
get_name()
(in
IfMover
)
get()
(in
SOGFuncAP
)
get()
(in
SetTemperatureFactorCreatorAP
)
get_name()
(in
IteratedConvergenceMover
)
get()
(in
SOGFuncCAP
)
get()
(in
SetTemperatureFactorCreatorCAP
)
get_name()
(in
JumpOutMover
)
get()
(in
SOGFunc_ImplAP
)
get()
(in
SetupHotspotConstraintsLoopsMoverAP
)
get_name()
(in
MCShowMover
)
get()
(in
SOGFunc_ImplCAP
)
get()
(in
SetupHotspotConstraintsLoopsMoverCAP
)
get_name()
(in
MonteCarloUtil
)
get()
(in
ScalarWeightedFuncAP
)
get()
(in
SetupHotspotConstraintsLoopsMoverCreatorAP
)
get_name()
(in
MoveMapMover
)
get()
(in
ScalarWeightedFuncCAP
)
get()
(in
SetupHotspotConstraintsLoopsMoverCreatorCAP
)
get_name()
(in
Mover
)
get()
(in
SigmoidFuncAP
)
get()
(in
SetupHotspotConstraintsMoverAP
)
get_name()
(in
MoverApplyingMover
)
get()
(in
SigmoidFuncCAP
)
get()
(in
SetupHotspotConstraintsMoverCAP
)
get_name()
(in
MoverContainer
)
get()
(in
SkipViolFuncAP
)
get()
(in
SetupHotspotConstraintsMoverCreatorAP
)
get_name()
(in
MoverForPoseList
)
get()
(in
SkipViolFuncCAP
)
get()
(in
SetupHotspotConstraintsMoverCreatorCAP
)
get_name()
(in
NullMover
)
get()
(in
SoedingFuncAP
)
get()
(in
ShoveResidueMoverAP
)
get_name()
(in
PDBDumpMover
)
get()
(in
SoedingFuncCAP
)
get()
(in
ShoveResidueMoverCAP
)
get_name()
(in
ProfilerMover
)
get()
(in
SplineFuncAP
)
get()
(in
ShoveResidueMoverCreatorAP
)
get_name()
(in
PyMolMover
)
get()
(in
SplineFuncCAP
)
get()
(in
ShoveResidueMoverCreatorCAP
)
get_name()
(in
RampingMover
)
get()
(in
SquareWell2FuncAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_name()
(in
RandomMover
)
get()
(in
SquareWell2FuncCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_name()
(in
RepeatMover
)
get()
(in
SquareWellFuncAP
)
get()
(in
SpinMoverAP
)
get_name()
(in
SequenceMover
)
get()
(in
SquareWellFuncCAP
)
get()
(in
SpinMoverCAP
)
get_name()
(in
StructureRestrictor
)
get()
(in
SumFuncAP
)
get()
(in
SpinMoverCreatorAP
)
get_name()
(in
TrialMover
)
get()
(in
SumFuncCAP
)
get()
(in
SpinMoverCreatorCAP
)
get_name()
(in
VectorPoseMover
)
get()
(in
TopOutFuncAP
)
get()
(in
SubroutineMoverAP
)
get_name()
(in
WhileMover
)
get()
(in
TopOutFuncCAP
)
get()
(in
SubroutineMoverCAP
)
get_name()
(in
StructAvrgMover
)
get()
(in
USOGFuncAP
)
get()
(in
SubroutineMoverCreatorAP
)
get_name()
(in
NcbbDockDesignProtocol
)
get()
(in
USOGFuncCAP
)
get()
(in
SubroutineMoverCreatorCAP
)
get_name()
(in
OopCreatorMover
)
get()
(in
XYZ_FuncAP
)
get()
(in
TaskAwareCstsAP
)
get_name()
(in
OopDockDesignProtocol
)
get()
(in
XYZ_FuncCAP
)
get()
(in
TaskAwareCstsCAP
)
get_name()
(in
CartesianNormalModeMover
)
get()
(in
ContextDependentGeometricSolEnergyAP
)
get()
(in
TaskAwareCstsCreatorAP
)
get_name()
(in
NormalModeMinimizer
)
get()
(in
ContextDependentGeometricSolEnergyCAP
)
get()
(in
TaskAwareCstsCreatorCAP
)
get_name()
(in
NormalModeRelaxMover
)
get()
(in
ContextDependentGeometricSolEnergyCreatorAP
)
get()
(in
TopologyBrokerMoverAP
)
get_name()
(in
TorsionNormalModeMover
)
get()
(in
ContextDependentGeometricSolEnergyCreatorCAP
)
get()
(in
TopologyBrokerMoverCAP
)
get_name()
(in
SetupPoissonBoltzmannPotential
)
get()
(in
ContextIndependentGeometricSolEnergyAP
)
get()
(in
TopologyBrokerMoverCreatorAP
)
get_name()
(in
SmallMol
)
get()
(in
ContextIndependentGeometricSolEnergyCAP
)
get()
(in
TopologyBrokerMoverCreatorCAP
)
get_name()
(in
AddChainBreak
)
get()
(in
ContextIndependentGeometricSolEnergyCreatorAP
)
get()
(in
TryRotamersAP
)
get_name()
(in
AddSidechainConstraintsToHotspots
)
get()
(in
ContextIndependentGeometricSolEnergyCreatorCAP
)
get()
(in
TryRotamersCAP
)
get_name()
(in
BackrubDDMover
)
get()
(in
DatabaseOccSolEneAP
)
get()
(in
TryRotamersCreatorAP
)
get_name()
(in
BestHotspotCstMover
)
get()
(in
DatabaseOccSolEneCAP
)
get()
(in
TryRotamersCreatorCAP
)
get_name()
(in
BuildAlaPose
)
get()
(in
ExactOccludedHbondSolEnergyAP
)
get()
(in
VLBAP
)
get_name()
(in
DesignMinimizeHbonds
)
get()
(in
ExactOccludedHbondSolEnergyCAP
)
get()
(in
VLBCAP
)
get_name()
(in
DisulfideMover
)
get()
(in
ExactOccludedHbondSolEnergyCreatorAP
)
get()
(in
VLBCreatorAP
)
get_name()
(in
DockAndRetrieveSidechains
)
get()
(in
ExactOccludedHbondSolEnergyCreatorCAP
)
get()
(in
VLBCreatorCAP
)
get_name()
(in
DockWithHotspotMover
)
get()
(in
GeometricSolEnergyEvaluatorAP
)
get()
(in
AutoRBMoverAP
)
get_name()
(in
FavorNativeResiduePreCycle
)
get()
(in
GeometricSolEnergyEvaluatorCAP
)
get()
(in
AutoRBMoverCAP
)
get_name()
(in
FavorNonNativeResiduePreCycle
)
get()
(in
GridInfoAP
)
get()
(in
FragInsertAndAlignMoverAP
)
get_name()
(in
HotspotDisjointedFoldTreeMover
)
get()
(in
GridInfoCAP
)
get()
(in
FragInsertAndAlignMoverCAP
)
get_name()
(in
HotspotHasherMover
)
get()
(in
OccludedHbondSolEnergyAP
)
get()
(in
GaussianRBSegmentMoverAP
)
get_name()
(in
InterfaceRecapitulationMover
)
get()
(in
OccludedHbondSolEnergyCAP
)
get()
(in
GaussianRBSegmentMoverCAP
)
get_name()
(in
LoopFinder
)
get()
(in
OccludedHbondSolEnergyCreatorAP
)
get()
(in
HelicalGaussianMoverAP
)
get_name()
(in
LoopLengthChange
)
get()
(in
OccludedHbondSolEnergyCreatorCAP
)
get()
(in
HelicalGaussianMoverCAP
)
get_name()
(in
LoopMoverFromCommandLine
)
get()
(in
OccludedHbondSolEnergy_onebodyAP
)
get()
(in
IdealizeHelicesMoverAP
)
get_name()
(in
LoopOver
)
get()
(in
OccludedHbondSolEnergy_onebodyCAP
)
get()
(in
IdealizeHelicesMoverCAP
)
get_name()
(in
LoopRemodel
)
get()
(in
OccludedHbondSolEnergy_onebodyCreatorAP
)
get()
(in
IdealizeHelicesMoverCreatorAP
)
get_name()
(in
MapHotspot
)
get()
(in
OccludedHbondSolEnergy_onebodyCreatorCAP
)
get()
(in
IdealizeHelicesMoverCreatorCAP
)
get_name()
(in
PatchdockTransform
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
MakeStarTopologyMoverAP
)
get_name()
(in
PeptideStapleDesignMover
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
MakeStarTopologyMoverCAP
)
get_name()
(in
PlaceOnLoop
)
get()
(in
SingletonBase_T_core_scoring_geometric_solvation_GridInfo_TAP
)
get()
(in
MakeStarTopologyMoverCreatorAP
)
get_name()
(in
PlaceSimultaneouslyMover
)
get()
(in
SingletonBase_T_core_scoring_geometric_solvation_GridInfo_TCAP
)
get()
(in
MakeStarTopologyMoverCreatorCAP
)
get_name()
(in
PlaceStubMover
)
get()
(in
SingletonBase_T_core_scoring_geometric_solvation_WaterWeightGridSet_TAP
)
get()
(in
OptimizeThreadingMoverAP
)
get_name()
(in
PlacementAuctionMover
)
get()
(in
SingletonBase_T_core_scoring_geometric_solvation_WaterWeightGridSet_TCAP
)
get()
(in
OptimizeThreadingMoverCAP
)
get_name()
(in
PlacementMinimizationMover
)
get()
(in
WaterWeightGridSetAP
)
get()
(in
OptimizeThreadingMoverCreatorAP
)
get_name()
(in
PrepackMover
)
get()
(in
WaterWeightGridSetCAP
)
get()
(in
OptimizeThreadingMoverCreatorCAP
)
get_name()
(in
ProteinInterfaceMultiStateDesignMover
)
get()
(in
HackAroEnergyAP
)
get()
(in
RBResidueRangeAP
)
get_name()
(in
RandomMutation
)
get()
(in
HackAroEnergyCAP
)
get()
(in
RBResidueRangeCAP
)
get_name()
(in
RepackMinimize
)
get()
(in
HackAroEnergyCreatorAP
)
get()
(in
RBSegmentAP
)
get_name()
(in
SaveAndRetrieveSidechains
)
get()
(in
HackAroEnergyCreatorCAP
)
get()
(in
RBSegmentCAP
)
get_name()
(in
SetAtomTree
)
get()
(in
FadeIntervalAP
)
get()
(in
RBSegmentMoverAP
)
get_name()
(in
SetTemperatureFactor
)
get()
(in
FadeIntervalCAP
)
get()
(in
RBSegmentMoverCAP
)
get_name()
(in
SetupHotspotConstraintsLoopsMover
)
get()
(in
HBEvalTupleAP
)
get()
(in
RBSegmentRelaxAP
)
get_name()
(in
SetupHotspotConstraintsMover
)
get()
(in
HBEvalTupleCAP
)
get()
(in
RBSegmentRelaxCAP
)
get_name()
(in
ShoveResidueMover
)
get()
(in
HBondAP
)
get()
(in
RB_ltAP
)
get_name()
(in
SpinMover
)
get()
(in
HBondCAP
)
get()
(in
RB_ltCAP
)
get_name()
(in
SubroutineMover
)
get()
(in
HBondDatabaseAP
)
get()
(in
SequenceShiftMoverAP
)
get_name()
(in
TaskAwareCsts
)
get()
(in
HBondDatabaseCAP
)
get()
(in
SequenceShiftMoverCAP
)
get_name()
(in
TopologyBrokerMover
)
get()
(in
HBondDerivsAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_name()
(in
TryRotamers
)
get()
(in
HBondDerivsCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_name()
(in
VLB
)
get()
(in
HBondEnergyAP
)
get()
(in
StrandTwistingMoverAP
)
get_name()
(in
AutoRBMover
)
get()
(in
HBondEnergyCAP
)
get()
(in
StrandTwistingMoverCAP
)
get_name()
(in
FragInsertAndAlignMover
)
get()
(in
HBondEnergyCreatorAP
)
get()
(in
AtomCoordinateCstMoverAP
)
get_name()
(in
GaussianRBSegmentMover
)
get()
(in
HBondEnergyCreatorCAP
)
get()
(in
AtomCoordinateCstMoverCAP
)
get_name()
(in
HelicalGaussianMover
)
get()
(in
HBondOptionsAP
)
get()
(in
AtomCoordinateCstMoverCreatorAP
)
get_name()
(in
IdealizeHelicesMover
)
get()
(in
HBondOptionsCAP
)
get()
(in
AtomCoordinateCstMoverCreatorCAP
)
get_name()
(in
MakeStarTopologyMover
)
get()
(in
HBondSetAP
)
get()
(in
CentroidRelaxAP
)
get_name()
(in
OptimizeThreadingMover
)
get()
(in
HBondSetCAP
)
get()
(in
CentroidRelaxCAP
)
get_name()
(in
RBSegmentMover
)
get()
(in
HBondTypeManagerAP
)
get()
(in
ClassicRelaxAP
)
get_name()
(in
RBSegmentRelax
)
get()
(in
HBondTypeManagerCAP
)
get()
(in
ClassicRelaxCAP
)
get_name()
(in
StrandTwistingMover
)
get()
(in
Polynomial_1dAP
)
get()
(in
ClassicRelaxCreatorAP
)
get_name()
(in
AtomCoordinateCstMover
)
get()
(in
Polynomial_1dCAP
)
get()
(in
ClassicRelaxCreatorCAP
)
get_name()
(in
CentroidRelax
)
get()
(in
SSWeightParametersAP
)
get()
(in
FastRelaxAP
)
get_name()
(in
ClassicRelax
)
get()
(in
SSWeightParametersCAP
)
get()
(in
FastRelaxCAP
)
get_name()
(in
FastRelax
)
get()
(in
HBAtomAP
)
get()
(in
FastRelaxCreatorAP
)
get_name()
(in
LocalRelax
)
get()
(in
HBAtomCAP
)
get()
(in
FastRelaxCreatorCAP
)
get_name()
(in
MiniRelax
)
get()
(in
HBCPDataAP
)
get()
(in
LocalRelaxAP
)
get_name()
(in
RelaxProtocolBase
)
get()
(in
HBCPDataCAP
)
get()
(in
LocalRelaxCAP
)
get_name()
(in
MPFastRelaxMover
)
get()
(in
HBCountPairFunctionAP
)
get()
(in
LocalRelaxCreatorAP
)
get_name()
(in
MembraneCenterPerturbationMover
)
get()
(in
HBCountPairFunctionCAP
)
get()
(in
LocalRelaxCreatorCAP
)
get_name()
(in
MembraneNormalPerturbationMover
)
get()
(in
DDPlookupAP
)
get()
(in
MiniRelaxAP
)
get_name()
(in
MovePoseToMembraneCenterMover
)
get()
(in
DDPlookupCAP
)
get()
(in
MiniRelaxCAP
)
get_name()
(in
RigidBodyDeterministicSpinMover
)
get()
(in
DDPscoreAP
)
get()
(in
RelaxProtocolBaseAP
)
get_name()
(in
RigidBodyDofPerturbMover
)
get()
(in
DDPscoreCAP
)
get()
(in
RelaxProtocolBaseCAP
)
get_name()
(in
RigidBodyDofRandomTransMover
)
get()
(in
DDPscoreCreatorAP
)
get()
(in
RelaxScriptCommandAP
)
get_name()
(in
RigidBodyDofRandomizeMover
)
get()
(in
DDPscoreCreatorCAP
)
get()
(in
RelaxScriptCommandCAP
)
get_name()
(in
RigidBodyDofSeqPerturbMover
)
get()
(in
LoopAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_name()
(in
RigidBodyDofSeqRandomizeMover
)
get()
(in
LoopCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_name()
(in
RigidBodyDofSeqTransMover
)
get()
(in
LoopCloseEnergyAP
)
get()
(in
WorkUnit_BatchRelaxAP
)
get_name()
(in
RigidBodyDofTransMover
)
get()
(in
LoopCloseEnergyCAP
)
get()
(in
WorkUnit_BatchRelaxCAP
)
get_name()
(in
RigidBodyMotionMover
)
get()
(in
LoopCloseEnergyCreatorAP
)
get()
(in
WorkUnit_BatchRelax_and_PostRescoreAP
)
get_name()
(in
RigidBodyMover
)
get()
(in
LoopCloseEnergyCreatorCAP
)
get()
(in
WorkUnit_BatchRelax_and_PostRescoreCAP
)
get_name()
(in
RigidBodyPerturbMover
)
get()
(in
LoopCycleAP
)
get()
(in
MPFastRelaxMoverAP
)
get_name()
(in
RigidBodyPerturbNoCenterMover
)
get()
(in
LoopCycleCAP
)
get()
(in
MPFastRelaxMoverCAP
)
get_name()
(in
RigidBodyPerturbRandomJumpMover
)
get()
(in
LoopGraphAP
)
get()
(in
MPFastRelaxMoverCreatorAP
)
get_name()
(in
RigidBodyRandomizeMover
)
get()
(in
LoopGraphCAP
)
get()
(in
MPFastRelaxMoverCreatorCAP
)
get_name()
(in
RigidBodySpinMover
)
get()
(in
LoopScoreInfoAP
)
get()
(in
MembraneCenterPerturbationMoverAP
)
get_name()
(in
RigidBodyTransMover
)
get()
(in
LoopScoreInfoCAP
)
get()
(in
MembraneCenterPerturbationMoverCAP
)
get_name()
(in
RollMover
)
get()
(in
FaMPEnvEnergyAP
)
get()
(in
MembraneNormalPerturbationMoverAP
)
get_name()
(in
RotateJumpAxisMover
)
get()
(in
FaMPEnvEnergyCAP
)
get()
(in
MembraneNormalPerturbationMoverCAP
)
get_name()
(in
UniformRigidBodyCM
)
get()
(in
FaMPEnvEnergyCreatorAP
)
get()
(in
MovePoseToMembraneCenterMoverAP
)
get_name()
(in
UniformRigidBodyMover
)
get()
(in
FaMPEnvEnergyCreatorCAP
)
get()
(in
MovePoseToMembraneCenterMoverCAP
)
get_name()
(in
UniformSphereTransMover
)
get()
(in
FaMPEnvSmoothEnergyAP
)
get()
(in
RigidBodyDeterministicSpinMoverAP
)
get_name()
(in
WholeBodyRotationMover
)
get()
(in
FaMPEnvSmoothEnergyCAP
)
get()
(in
RigidBodyDeterministicSpinMoverCAP
)
get_name()
(in
WholeBodyTranslationMover
)
get()
(in
FaMPEnvSmoothEnergyCreatorAP
)
get()
(in
RigidBodyDofPerturbMoverAP
)
get_name()
(in
AdditionalOutputWrapper
)
get()
(in
FaMPEnvSmoothEnergyCreatorCAP
)
get()
(in
RigidBodyDofPerturbMoverCAP
)
get_name()
(in
MultipleOutputWrapper
)
get()
(in
FaMPSolvEnergyAP
)
get()
(in
RigidBodyDofRandomTransMoverAP
)
get_name()
(in
MultiplePoseMover
)
get()
(in
FaMPSolvEnergyCAP
)
get()
(in
RigidBodyDofRandomTransMoverCAP
)
get_name()
(in
ParsedProtocol
)
get()
(in
FaMPSolvEnergyCreatorAP
)
get()
(in
RigidBodyDofRandomizeMoverAP
)
get_name()
(in
PosePropertyReporter
)
get()
(in
FaMPSolvEnergyCreatorCAP
)
get()
(in
RigidBodyDofRandomizeMoverCAP
)
get_name()
(in
PoseSelector
)
get()
(in
MPCbetaEnergyAP
)
get()
(in
RigidBodyDofSeqPerturbMoverAP
)
get_name()
(in
SavePoseMover
)
get()
(in
MPCbetaEnergyCAP
)
get()
(in
RigidBodyDofSeqPerturbMoverCAP
)
get_name()
(in
RRComparer
)
get()
(in
MPCbetaEnergyCreatorAP
)
get()
(in
RigidBodyDofSeqRandomizeMoverAP
)
get_name()
(in
RRComparerAutomorphicRMSD
)
get()
(in
MPCbetaEnergyCreatorCAP
)
get()
(in
RigidBodyDofSeqRandomizeMoverCAP
)
get_name()
(in
RRComparerChiDiff
)
get()
(in
MPEnvEnergyAP
)
get()
(in
RigidBodyDofSeqTransMoverAP
)
get_name()
(in
RRComparerElecDensDiff
)
get()
(in
MPEnvEnergyCAP
)
get()
(in
RigidBodyDofSeqTransMoverCAP
)
get_name()
(in
RRComparerRotBins
)
get()
(in
MPEnvEnergyCreatorAP
)
get()
(in
RigidBodyDofTransMoverAP
)
get_name()
(in
RRProtocol
)
get()
(in
MPEnvEnergyCreatorCAP
)
get()
(in
RigidBodyDofTransMoverCAP
)
get_name()
(in
RRProtocolMinPack
)
get()
(in
MPLipoEnergyAP
)
get()
(in
RigidBodyMotionMoverAP
)
get_name()
(in
RRProtocolMover
)
get()
(in
MPLipoEnergyCAP
)
get()
(in
RigidBodyMotionMoverCAP
)
get_name()
(in
RRProtocolPackRotamers
)
get()
(in
MPLipoEnergyCreatorAP
)
get()
(in
RigidBodyMoverAP
)
get_name()
(in
RRProtocolRTMin
)
get()
(in
MPLipoEnergyCreatorCAP
)
get()
(in
RigidBodyMoverCAP
)
get_name()
(in
RRProtocolReferenceStructure
)
get()
(in
MPNonHelixPenaltyAP
)
get()
(in
RigidBodyPerturbMoverAP
)
get_name()
(in
RRProtocolRelax
)
get()
(in
MPNonHelixPenaltyCAP
)
get()
(in
RigidBodyPerturbMoverCAP
)
get_name()
(in
RRProtocolRotamerTrials
)
get()
(in
MPNonHelixPenaltyCreatorAP
)
get()
(in
RigidBodyPerturbNoCenterMoverAP
)
get_name()
(in
RotamerRecoveryMover
)
get()
(in
MPNonHelixPenaltyCreatorCAP
)
get()
(in
RigidBodyPerturbNoCenterMoverCAP
)
get_name()
(in
CAcstGenerator
)
get()
(in
MPPairEnergyAP
)
get()
(in
RigidBodyPerturbNoCenterMoverCreatorAP
)
get_name()
(in
CloseFold
)
get()
(in
MPPairEnergyCAP
)
get()
(in
RigidBodyPerturbNoCenterMoverCreatorCAP
)
get_name()
(in
CoordinateCst
)
get()
(in
MPPairEnergyCreatorAP
)
get()
(in
RigidBodyPerturbRandomJumpMoverAP
)
get_name()
(in
DefineMovableLoops
)
get()
(in
MPPairEnergyCreatorCAP
)
get()
(in
RigidBodyPerturbRandomJumpMoverCAP
)
get_name()
(in
GrowPeptides
)
get()
(in
MPTMProjPenaltyAP
)
get()
(in
RigidBodyRandomizeMoverAP
)
get_name()
(in
SeedFoldTree
)
get()
(in
MPTMProjPenaltyCAP
)
get()
(in
RigidBodyRandomizeMoverCAP
)
get_name()
(in
SeedSetupMover
)
get()
(in
MPTMProjPenaltyCreatorAP
)
get()
(in
RigidBodySpinMoverAP
)
get_name()
(in
SegmentHybridizer
)
get()
(in
MPTMProjPenaltyCreatorCAP
)
get()
(in
RigidBodySpinMoverCAP
)
get_name()
(in
SwapSegment
)
get()
(in
MPTerminiPenaltyAP
)
get()
(in
RigidBodyTransMoverAP
)
get_name()
(in
EvaluatedTrialMover
)
get()
(in
MPTerminiPenaltyCAP
)
get()
(in
RigidBodyTransMoverCAP
)
get_name()
(in
AddCavitiesMover
)
get()
(in
MPTerminiPenaltyCreatorAP
)
get()
(in
RigidBodyTransMoverCreatorAP
)
get_name()
(in
AddChainMover
)
get()
(in
MPTerminiPenaltyCreatorCAP
)
get()
(in
RigidBodyTransMoverCreatorCAP
)
get_name()
(in
AddConstraintsToCurrentConformationMover
)
get()
(in
MembraneDataAP
)
get()
(in
RollMoverAP
)
get_name()
(in
AddJobPairData
)
get()
(in
MembraneDataCAP
)
get()
(in
RollMoverCAP
)
get_name()
(in
AlignChainMover
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
RollMoverCreatorAP
)
get_name()
(in
BBConRotMover
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
RollMoverCreatorCAP
)
get_name()
(in
BBG8T3AMover
)
get()
(in
BBDepCartBondedParametersAP
)
get()
(in
RotateJumpAxisMoverAP
)
get_name()
(in
BBGaussianMover
)
get()
(in
BBDepCartBondedParametersCAP
)
get()
(in
RotateJumpAxisMoverCAP
)
get_name()
(in
BackboneMover
)
get()
(in
BBIndepCartBondedParametersAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_name()
(in
BoltzmannRotamerMover
)
get()
(in
BBIndepCartBondedParametersCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_name()
(in
ChainSplitMover
)
get()
(in
BurialEnergyAP
)
get()
(in
UniformRigidBodyCMAP
)
get_name()
(in
ChangeAndResetFoldTreeMover
)
get()
(in
BurialEnergyCAP
)
get()
(in
UniformRigidBodyCMCAP
)
get_name()
(in
ClassicFragmentMover
)
get()
(in
BurialEnergyCreatorAP
)
get()
(in
UniformRigidBodyCMCreatorAP
)
get_name()
(in
ClearConstraintsMover
)
get()
(in
BurialEnergyCreatorCAP
)
get()
(in
UniformRigidBodyCMCreatorCAP
)
get_name()
(in
CombinePoseMover
)
get()
(in
CartBondedParametersAP
)
get()
(in
UniformRigidBodyMoverAP
)
get_name()
(in
ConsensusDesignMover
)
get()
(in
CartBondedParametersCAP
)
get()
(in
UniformRigidBodyMoverCAP
)
get_name()
(in
ConstrainToIdealMover
)
get()
(in
CartesianBondedEnergyAP
)
get()
(in
UniformRigidBodyMoverCreatorAP
)
get_name()
(in
ConstraintSetMover
)
get()
(in
CartesianBondedEnergyCAP
)
get()
(in
UniformRigidBodyMoverCreatorCAP
)
get_name()
(in
ContingentAcceptMover
)
get()
(in
CartesianBondedEnergyCreatorAP
)
get()
(in
UniformSphereTransMoverAP
)
get_name()
(in
CopyDofMover
)
get()
(in
CartesianBondedEnergyCreatorCAP
)
get()
(in
UniformSphereTransMoverCAP
)
get_name()
(in
CoupledMover
)
get()
(in
CenHBEnergyAP
)
get()
(in
WholeBodyRotationMoverAP
)
get_name()
(in
CutChainMover
)
get()
(in
CenHBEnergyCAP
)
get()
(in
WholeBodyRotationMoverCAP
)
get_name()
(in
CyclizationMover
)
get()
(in
CenHBEnergyCreatorAP
)
get()
(in
WholeBodyTranslationMoverAP
)
get_name()
(in
DME_FilterMover
)
get()
(in
CenHBEnergyCreatorCAP
)
get()
(in
WholeBodyTranslationMoverCAP
)
get_name()
(in
DeleteChainsMover
)
get()
(in
CenPairEnergyAP
)
get()
(in
AdditionalOutputWrapperAP
)
get_name()
(in
DesignRepackMover
)
get()
(in
CenPairEnergyCAP
)
get()
(in
AdditionalOutputWrapperCAP
)
get_name()
(in
DisulfideInsertionMover
)
get()
(in
CenPairEnergyCreatorAP
)
get()
(in
AdditionalOutputWrapperCreatorAP
)
get_name()
(in
DumpPdb
)
get()
(in
CenPairEnergyCreatorCAP
)
get()
(in
AdditionalOutputWrapperCreatorCAP
)
get_name()
(in
EnergyCutRotamerTrialsMinMover
)
get()
(in
CenRotEnvEnergyAP
)
get()
(in
MultipleOutputWrapperAP
)
get_name()
(in
EnergyCutRotamerTrialsMover
)
get()
(in
CenRotEnvEnergyCAP
)
get()
(in
MultipleOutputWrapperCAP
)
get_name()
(in
ExtendedPoseMover
)
get()
(in
CenRotEnvEnergyCreatorAP
)
get()
(in
MultipleOutputWrapperCreatorAP
)
get_name()
(in
FavorSequenceProfile
)
get()
(in
CenRotEnvEnergyCreatorCAP
)
get()
(in
MultipleOutputWrapperCreatorCAP
)
get_name()
(in
FavorSymmetricSequence
)
get()
(in
CenRotPairEnergyAP
)
get()
(in
MultiplePoseMoverAP
)
get_name()
(in
FindConsensusSequence
)
get()
(in
CenRotPairEnergyCAP
)
get()
(in
MultiplePoseMoverCAP
)
get_name()
(in
ForceDisulfidesMover
)
get()
(in
CenRotPairEnergyCreatorAP
)
get()
(in
MultiplePoseMoverCreatorAP
)
get_name()
(in
FragmentMover
)
get()
(in
CenRotPairEnergyCreatorCAP
)
get()
(in
MultiplePoseMoverCreatorCAP
)
get_name()
(in
GenericMonteCarloMover
)
get()
(in
ChainbreakEnergyAP
)
get()
(in
ParsedProtocolAP
)
get_name()
(in
GreenPacker
)
get()
(in
ChainbreakEnergyCAP
)
get()
(in
ParsedProtocolCAP
)
get_name()
(in
LoadPDBMover
)
get()
(in
ChainbreakEnergyCreatorAP
)
get()
(in
ParsedProtocolCreatorAP
)
get_name()
(in
LoadUnboundRotMover
)
get()
(in
ChainbreakEnergyCreatorCAP
)
get()
(in
ParsedProtocolCreatorCAP
)
get_name()
(in
LoggedFragmentMover
)
get()
(in
ChemicalShiftAnisotropyEnergyAP
)
get()
(in
PosePropertyReporterAP
)
get_name()
(in
MSDMover
)
get()
(in
ChemicalShiftAnisotropyEnergyCAP
)
get()
(in
PosePropertyReporterCAP
)
get_name()
(in
MakePolyXMover
)
get()
(in
ChemicalShiftAnisotropyEnergyCreatorAP
)
get()
(in
PosePropertyReporterCreatorAP
)
get_name()
(in
MembraneTopology
)
get()
(in
ChemicalShiftAnisotropyEnergyCreatorCAP
)
get()
(in
PosePropertyReporterCreatorCAP
)
get_name()
(in
MinMover
)
get()
(in
ContactOrderEnergyAP
)
get()
(in
PosePropertyReporterFactoryAP
)
get_name()
(in
MinPackMover
)
get()
(in
ContactOrderEnergyCAP
)
get()
(in
PosePropertyReporterFactoryCAP
)
get_name()
(in
MissingDensityToJumpMover
)
get()
(in
ContactOrderEnergyCreatorAP
)
get()
(in
PoseSelectorAP
)
get_name()
(in
ModifyVariantTypeMover
)
get()
(in
ContactOrderEnergyCreatorCAP
)
get()
(in
PoseSelectorCAP
)
get_name()
(in
MonteCarloRecover
)
get()
(in
ContextDependentLRTwoBodyEnergyAP
)
get()
(in
PoseSelectorCreatorAP
)
get_name()
(in
MonteCarloReset
)
get()
(in
ContextDependentLRTwoBodyEnergyCAP
)
get()
(in
PoseSelectorCreatorCAP
)
get_name()
(in
MonteCarloTest
)
get()
(in
ContextDependentOneBodyEnergyAP
)
get()
(in
PoseSelectorFactoryAP
)
get_name()
(in
MutateResidue
)
get()
(in
ContextDependentOneBodyEnergyCAP
)
get()
(in
PoseSelectorFactoryCAP
)
get_name()
(in
O2M_MutateMover
)
get()
(in
ContextDependentTwoBodyEnergyAP
)
get()
(in
RosettaScriptsParserAP
)
get_name()
(in
PDBReloadMover
)
get()
(in
ContextDependentTwoBodyEnergyCAP
)
get()
(in
RosettaScriptsParserCAP
)
get_name()
(in
PSSM2BfactorMover
)
get()
(in
ContextIndependentLRTwoBodyEnergyAP
)
get()
(in
SavePoseMoverAP
)
get_name()
(in
PackRotamersMover
)
get()
(in
ContextIndependentLRTwoBodyEnergyCAP
)
get()
(in
SavePoseMoverCAP
)
get_name()
(in
PackRotamersMoverLazy
)
get()
(in
ContextIndependentOneBodyEnergyAP
)
get()
(in
SavePoseMoverCreatorAP
)
get_name()
(in
PeptideStapleMover
)
get()
(in
ContextIndependentOneBodyEnergyCAP
)
get()
(in
SavePoseMoverCreatorCAP
)
get_name()
(in
PeriodicBoxMover
)
get()
(in
ContextIndependentTwoBodyEnergyAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_name()
(in
ProlineFixMover
)
get()
(in
ContextIndependentTwoBodyEnergyCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_name()
(in
RandomOmegaFlipMover
)
get()
(in
CustomAtomPairEnergyAP
)
get()
(in
SingletonBase_T_protocols_rosetta_scripts_PoseSelectorFactory_TAP
)
get_name()
(in
RandomTorsionMover
)
get()
(in
CustomAtomPairEnergyCAP
)
get()
(in
SingletonBase_T_protocols_rosetta_scripts_PoseSelectorFactory_TCAP
)
get_name()
(in
RepackSidechainsMover
)
get()
(in
CustomAtomPairEnergyCreatorAP
)
get()
(in
PerNativeRRReporterHumanAP
)
get_name()
(in
RepeatPropagationMover
)
get()
(in
CustomAtomPairEnergyCreatorCAP
)
get()
(in
PerNativeRRReporterHumanCAP
)
get_name()
(in
ReportEffectivePKA
)
get()
(in
D2H_SA_EnergyAP
)
get()
(in
RRComparerAP
)
get_name()
(in
RepulsiveOnlyMover
)
get()
(in
D2H_SA_EnergyCAP
)
get()
(in
RRComparerAutomorphicRMSDAP
)
get_name()
(in
ResetBaselineMover
)
get()
(in
D2H_SA_EnergyCreatorAP
)
get()
(in
RRComparerAutomorphicRMSDCAP
)
get_name()
(in
ResidueTypeConstraintMover
)
get()
(in
D2H_SA_EnergyCreatorCAP
)
get()
(in
RRComparerAutomorphicRMSDCreatorAP
)
get_name()
(in
ReturnSidechainMover
)
get()
(in
DNA_BaseEnergyAP
)
get()
(in
RRComparerAutomorphicRMSDCreatorCAP
)
get_name()
(in
RingConformationMover
)
get()
(in
DNA_BaseEnergyCAP
)
get()
(in
RRComparerCAP
)
get_name()
(in
RotamerTrialsMinMover
)
get()
(in
DNA_BaseEnergyCreatorAP
)
get()
(in
RRComparerChiDiffAP
)
get_name()
(in
RotamerTrialsMover
)
get()
(in
DNA_BaseEnergyCreatorCAP
)
get()
(in
RRComparerChiDiffCAP
)
get_name()
(in
RotamerizeMover
)
get()
(in
DipolarCouplingEnergyAP
)
get()
(in
RRComparerChiDiffCreatorAP
)
get_name()
(in
SaneMinMover
)
get()
(in
DipolarCouplingEnergyCAP
)
get()
(in
RRComparerChiDiffCreatorCAP
)
get_name()
(in
ScoreMover
)
get()
(in
DipolarCouplingEnergyCreatorAP
)
get()
(in
RRComparerCreatorAP
)
get_name()
(in
SequenceProfileMover
)
get()
(in
DipolarCouplingEnergyCreatorCAP
)
get()
(in
RRComparerCreatorCAP
)
get_name()
(in
SetReturningPackRotamersMover
)
get()
(in
DirectReadoutEnergyAP
)
get()
(in
RRComparerElecDensDiffAP
)
get_name()
(in
SetTorsion
)
get()
(in
DirectReadoutEnergyCAP
)
get()
(in
RRComparerElecDensDiffCAP
)
get_name()
(in
ShakeStructureMover
)
get()
(in
DirectReadoutEnergyCreatorAP
)
get()
(in
RRComparerElecDensDiffCreatorAP
)
get_name()
(in
ShearMover
)
get()
(in
DirectReadoutEnergyCreatorCAP
)
get()
(in
RRComparerElecDensDiffCreatorCAP
)
get_name()
(in
ShortBackrubMover
)
get()
(in
DistanceChainbreakEnergyAP
)
get()
(in
RRComparerRotBinsAP
)
get_name()
(in
SmallMover
)
get()
(in
DistanceChainbreakEnergyCAP
)
get()
(in
RRComparerRotBinsCAP
)
get_name()
(in
SmoothFragmentMover
)
get()
(in
DistanceChainbreakEnergyCreatorAP
)
get()
(in
RRComparerRotBinsCreatorAP
)
get_name()
(in
SuperimposeMover
)
get()
(in
DistanceChainbreakEnergyCreatorCAP
)
get()
(in
RRComparerRotBinsCreatorCAP
)
get_name()
(in
SwitchChainOrderMover
)
get()
(in
EnergyMethodAP
)
get()
(in
RRProtocolAP
)
get_name()
(in
SwitchResidueTypeSetMover
)
get()
(in
EnergyMethodCAP
)
get()
(in
RRProtocolCAP
)
get_name()
(in
TailsScoreMover
)
get()
(in
EnergyMethodCreatorAP
)
get()
(in
RRProtocolCreatorAP
)
get_name()
(in
TaskAwareMinMover
)
get()
(in
EnergyMethodCreatorCAP
)
get()
(in
RRProtocolCreatorCAP
)
get_name()
(in
TorsionDOFMover
)
get()
(in
EnergyMethodOptionsAP
)
get()
(in
RRProtocolMinPackAP
)
get_name()
(in
TorsionSetMover
)
get()
(in
EnergyMethodOptionsCAP
)
get()
(in
RRProtocolMinPackCAP
)
get_name()
(in
Tumble
)
get()
(in
EnvEnergyAP
)
get()
(in
RRProtocolMinPackCreatorAP
)
get_name()
(in
UniformRotationMover
)
get()
(in
EnvEnergyCAP
)
get()
(in
RRProtocolMinPackCreatorCAP
)
get_name()
(in
UniformTranslationMover
)
get()
(in
EnvEnergyCreatorAP
)
get()
(in
RRProtocolMoverAP
)
get_name()
(in
VallLookbackFragMover
)
get()
(in
EnvEnergyCreatorCAP
)
get()
(in
RRProtocolMoverCAP
)
get_name()
(in
VirtualRootMover
)
get()
(in
EnvSmoothEnergyAP
)
get()
(in
RRProtocolMoverCreatorAP
)
get_name()
(in
WobbleMover
)
get()
(in
EnvSmoothEnergyCAP
)
get()
(in
RRProtocolMoverCreatorCAP
)
get_name()
(in
ddG
)
get()
(in
EnvSmoothEnergyCreatorAP
)
get()
(in
RRProtocolPackRotamersAP
)
get_name()
(in
AsymFoldandDockMoveRbJumpMover
)
get()
(in
EnvSmoothEnergyCreatorCAP
)
get()
(in
RRProtocolPackRotamersCAP
)
get_name()
(in
AsymFoldandDockRbTrialMover
)
get()
(in
Fa_MbenvEnergyAP
)
get()
(in
RRProtocolPackRotamersCreatorAP
)
get_name()
(in
InitializeByBins
)
get()
(in
Fa_MbenvEnergyCAP
)
get()
(in
RRProtocolPackRotamersCreatorCAP
)
get_name()
(in
PerturbByBins
)
get()
(in
Fa_MbenvEnergyCreatorAP
)
get()
(in
RRProtocolRTMinAP
)
get_name()
(in
ChiralMover
)
get()
(in
Fa_MbenvEnergyCreatorCAP
)
get()
(in
RRProtocolRTMinCAP
)
get_name()
(in
HbsPatcher
)
get()
(in
Fa_MbsolvEnergyAP
)
get()
(in
RRProtocolRTMinCreatorAP
)
get_name()
(in
OopDPuckMinusMover
)
get()
(in
Fa_MbsolvEnergyCAP
)
get()
(in
RRProtocolRTMinCreatorCAP
)
get_name()
(in
OopDPuckPlusMover
)
get()
(in
Fa_MbsolvEnergyCreatorAP
)
get()
(in
RRProtocolReferenceStructureAP
)
get_name()
(in
OopMover
)
get()
(in
Fa_MbsolvEnergyCreatorCAP
)
get()
(in
RRProtocolReferenceStructureCAP
)
get_name()
(in
OopPatcher
)
get()
(in
FreeDOF_EnergyAP
)
get()
(in
RRProtocolReferenceStructureCreatorAP
)
get_name()
(in
OopPuckMinusMover
)
get()
(in
FreeDOF_EnergyCAP
)
get()
(in
RRProtocolReferenceStructureCreatorCAP
)
get_name()
(in
OopPuckPlusMover
)
get()
(in
FreeDOF_EnergyCreatorAP
)
get()
(in
RRProtocolRelaxAP
)
get_name()
(in
OopRandomPuckMover
)
get()
(in
FreeDOF_EnergyCreatorCAP
)
get()
(in
RRProtocolRelaxCAP
)
get_name()
(in
OopRandomSmallMover
)
get()
(in
FreeDOF_OptionsAP
)
get()
(in
RRProtocolRelaxCreatorAP
)
get_name()
(in
RationalMonteCarlo
)
get()
(in
FreeDOF_OptionsCAP
)
get()
(in
RRProtocolRelaxCreatorCAP
)
get_name()
(in
JumpRotamerSidechainMover
)
get()
(in
GaussianOverlapEnergyAP
)
get()
(in
RRProtocolRotamerTrialsAP
)
get_name()
(in
PerturbChiSidechainMover
)
get()
(in
GaussianOverlapEnergyCAP
)
get()
(in
RRProtocolRotamerTrialsCAP
)
get_name()
(in
PerturbRotamerSidechainMover
)
get()
(in
GenBornEnergyAP
)
get()
(in
RRProtocolRotamerTrialsCreatorAP
)
get_name()
(in
SetChiMover
)
get()
(in
GenBornEnergyCAP
)
get()
(in
RRProtocolRotamerTrialsCreatorCAP
)
get_name()
(in
SidechainMCMover
)
get()
(in
GenBornEnergyCreatorAP
)
get()
(in
RRReporterAP
)
get_name()
(in
SidechainMover
)
get()
(in
GenBornEnergyCreatorCAP
)
get()
(in
RRReporterCAP
)
get_name()
(in
SidechainMoverBase
)
get()
(in
GoapEnergyAP
)
get()
(in
RRReporterCreatorAP
)
get_name()
(in
DetectSymmetry
)
get()
(in
GoapEnergyCAP
)
get()
(in
RRReporterCreatorCAP
)
get_name()
(in
ExtractAsymmetricPoseMover
)
get()
(in
GoapEnergyCreatorAP
)
get()
(in
RRReporterHumanAP
)
get_name()
(in
ExtractAsymmetricUnitMover
)
get()
(in
GoapEnergyCreatorCAP
)
get()
(in
RRReporterHumanCAP
)
get_name()
(in
FaSymDockingSlideTogether
)
get()
(in
GoapRsdTypeAP
)
get()
(in
RRReporterHumanCreatorAP
)
get_name()
(in
SetupForSymmetryMover
)
get()
(in
GoapRsdTypeCAP
)
get()
(in
RRReporterHumanCreatorCAP
)
get_name()
(in
SetupNCSMover
)
get()
(in
HybridVDW_EnergyAP
)
get()
(in
RRReporterSQLiteAP
)
get_name()
(in
SymDockingInitialPerturbation
)
get()
(in
HybridVDW_EnergyCAP
)
get()
(in
RRReporterSQLiteCAP
)
get_name()
(in
SymDockingSlideIntoContact
)
get()
(in
HybridVDW_EnergyCreatorAP
)
get()
(in
RRReporterSQLiteCreatorAP
)
get_name()
(in
SymEnergyCutRotamerTrialsMover
)
get()
(in
HybridVDW_EnergyCreatorCAP
)
get()
(in
RRReporterSQLiteCreatorCAP
)
get_name()
(in
SymMinMover
)
get()
(in
IdealParametersDatabaseAP
)
get()
(in
RRReporterSimpleAP
)
get_name()
(in
SymPackRotamersMover
)
get()
(in
IdealParametersDatabaseCAP
)
get()
(in
RRReporterSimpleCAP
)
get_name()
(in
SymRotamerTrialsMover
)
get()
(in
IntermolEnergyAP
)
get()
(in
RRReporterSimpleCreatorAP
)
get_name()
(in
SymShakeStructureMover
)
get()
(in
IntermolEnergyCAP
)
get()
(in
RRReporterSimpleCreatorCAP
)
get_name()
(in
SymmetricRMSMover
)
get()
(in
IntermolEnergyCreatorAP
)
get()
(in
RotamerRecoveryAP
)
get_name()
(in
TaskAwareSymMinMover
)
get()
(in
IntermolEnergyCreatorCAP
)
get()
(in
RotamerRecoveryCAP
)
get_name()
(in
StepWiseProteinMinimizer
)
get()
(in
LKB_ResidueInfoAP
)
get()
(in
RotamerRecoveryFactoryAP
)
get_name()
(in
StepWiseProteinPoseSetup
)
get()
(in
LKB_ResidueInfoCAP
)
get()
(in
RotamerRecoveryFactoryCAP
)
get_name()
(in
StepWiseRNA_PoseSetup
)
get()
(in
LKB_ResiduesInfoAP
)
get()
(in
RotamerRecoveryMoverAP
)
get_name()
(in
StepWiseConnectionSampler
)
get()
(in
LKB_ResiduesInfoCAP
)
get()
(in
RotamerRecoveryMoverCAP
)
get_name()
(in
StepWiseMinimizer
)
get()
(in
LK_BallEnergyAP
)
get()
(in
RotamerRecoveryMoverCreatorAP
)
get_name()
(in
StepWiseModeler
)
get()
(in
LK_BallEnergyCAP
)
get()
(in
RotamerRecoveryMoverCreatorCAP
)
get_name()
(in
SideChainCopier
)
get()
(in
LK_BallEnergyCreatorAP
)
get()
(in
SingletonBase_T_protocols_rotamer_recovery_RotamerRecoveryFactory_TAP
)
get_name()
(in
StepWisePacker
)
get()
(in
LK_BallEnergyCreatorCAP
)
get()
(in
SingletonBase_T_protocols_rotamer_recovery_RotamerRecoveryFactory_TCAP
)
get_name()
(in
PolarHydrogenPacker
)
get()
(in
LK_PolarNonPolarEnergyAP
)
get()
(in
BasicCmdLineInitAP
)
get_name()
(in
PrecomputedLibraryMover
)
get()
(in
LK_PolarNonPolarEnergyCAP
)
get()
(in
BasicCmdLineInitCAP
)
get_name()
(in
StepWiseProteinBackboneSampler
)
get()
(in
LK_PolarNonPolarEnergyCreatorAP
)
get()
(in
BasicInitAP
)
get_name()
(in
StepWiseProteinCCD_Closer
)
get()
(in
LK_PolarNonPolarEnergyCreatorCAP
)
get()
(in
BasicInitCAP
)
get_name()
(in
StepWiseProteinCCD_MultiPoseCloser
)
get()
(in
LK_hackAP
)
get()
(in
JSON_RPCAP
)
get_name()
(in
StepWiseProteinKIC_LoopBridger
)
get()
(in
LK_hackCAP
)
get()
(in
JSON_RPCCAP
)
get_name()
(in
BulgeApplyMover
)
get()
(in
LK_hackCreatorAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_name()
(in
BulgeUnApplyMover
)
get()
(in
LK_hackCreatorCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_name()
(in
RNA_ChainClosureChecker
)
get()
(in
LinearChainbreakEnergyAP
)
get()
(in
ImplicitFastClashCheckAP
)
get_name()
(in
RNA_HelixAssembler
)
get()
(in
LinearChainbreakEnergyCAP
)
get()
(in
ImplicitFastClashCheckCAP
)
get_name()
(in
O2PrimePacker
)
get()
(in
LinearChainbreakEnergyCreatorAP
)
get()
(in
InterchainPotentialAP
)
get_name()
(in
MultiPhosphateSampler
)
get()
(in
LinearChainbreakEnergyCreatorCAP
)
get()
(in
InterchainPotentialCAP
)
get_name()
(in
PhosphateMover
)
get()
(in
LongRangeTwoBodyEnergyAP
)
get()
(in
InterfaceAP
)
get_name()
(in
SugarInstantiateMover
)
get()
(in
LongRangeTwoBodyEnergyCAP
)
get()
(in
InterfaceCAP
)
get_name()
(in
SugarVirtualizeMover
)
get()
(in
MMBondAngleEnergyAP
)
get()
(in
InterfaceInfoAP
)
get_name()
(in
VirtualSugarJustInTimeInstantiator
)
get()
(in
MMBondAngleEnergyCAP
)
get()
(in
InterfaceInfoCAP
)
get_name()
(in
VirtualSugarSampler
)
get()
(in
MMBondAngleEnergyCreatorAP
)
get()
(in
ResidualDipolarCouplingRigidSegmentsAP
)
get_name()
(in
VirtualSugarSamplerFromStringList
)
get()
(in
MMBondAngleEnergyCreatorCAP
)
get()
(in
ResidualDipolarCouplingRigidSegmentsCAP
)
get_name()
(in
StepWiseMonteCarlo
)
get()
(in
MMBondLengthEnergyAP
)
get()
(in
SingletonBase_T_protocols_scoring_InterchainPotential_TAP
)
get_name()
(in
AddMover
)
get()
(in
MMBondLengthEnergyCAP
)
get()
(in
SingletonBase_T_protocols_scoring_InterchainPotential_TCAP
)
get_name()
(in
AddOrDeleteMover
)
get()
(in
MMBondLengthEnergyCreatorAP
)
get()
(in
EnsembleEnergyAP
)
get_name()
(in
DeleteMover
)
get()
(in
MMBondLengthEnergyCreatorCAP
)
get()
(in
EnsembleEnergyCAP
)
get_name()
(in
FromScratchMover
)
get()
(in
MMLJEnergyInterAP
)
get()
(in
EnsembleEnergyCreatorAP
)
get_name()
(in
ResampleMover
)
get()
(in
MMLJEnergyInterCAP
)
get()
(in
EnsembleEnergyCreatorCAP
)
get_name()
(in
StepWiseMasterMover
)
get()
(in
MMLJEnergyInterCreatorAP
)
get()
(in
InterchainEnvEnergyAP
)
get_name()
(in
RNA_AddDeleteMonteCarlo
)
get()
(in
MMLJEnergyInterCreatorCAP
)
get()
(in
InterchainEnvEnergyCAP
)
get_name()
(in
RNA_O2PrimeMover
)
get()
(in
MMLJEnergyIntraAP
)
get()
(in
InterchainEnvEnergyCreatorAP
)
get_name()
(in
RNA_TorsionMover
)
get()
(in
MMLJEnergyIntraCAP
)
get()
(in
InterchainEnvEnergyCreatorCAP
)
get_name()
(in
JumpStepWiseSampler
)
get()
(in
MMLJEnergyIntraCreatorAP
)
get()
(in
InterchainPairEnergyAP
)
get_name()
(in
MC_Comb
)
get()
(in
MMLJEnergyIntraCreatorCAP
)
get()
(in
InterchainPairEnergyCAP
)
get_name()
(in
MC_OneTorsion
)
get()
(in
MMTorsionEnergyAP
)
get()
(in
InterchainPairEnergyCreatorAP
)
get_name()
(in
MC_StepWiseSampler
)
get()
(in
MMTorsionEnergyCAP
)
get()
(in
InterchainPairEnergyCreatorCAP
)
get_name()
(in
NoOpStepWiseSampler
)
get()
(in
MMTorsionEnergyCreatorAP
)
get()
(in
ResidualDipolarCouplingEnergyRigidSegmentsAP
)
get_name()
(in
StepWiseSamplerAny
)
get()
(in
MMTorsionEnergyCreatorCAP
)
get()
(in
ResidualDipolarCouplingEnergyRigidSegmentsCAP
)
get_name()
(in
StepWiseSamplerBase
)
get()
(in
MembraneCbetaEnergyAP
)
get()
(in
ResidualDipolarCouplingEnergyRigidSegmentsCreatorAP
)
get_name()
(in
StepWiseSamplerComb
)
get()
(in
MembraneCbetaEnergyCAP
)
get()
(in
ResidualDipolarCouplingEnergyRigidSegmentsCreatorCAP
)
get_name()
(in
StepWiseSamplerOneTorsion
)
get()
(in
MembraneCbetaEnergyCreatorAP
)
get()
(in
SingletonBase_T_protocols_scoring_InterchainPotential_TAP
)
get_name()
(in
StepWiseSamplerOneValue
)
get()
(in
MembraneCbetaEnergyCreatorCAP
)
get()
(in
SingletonBase_T_protocols_scoring_InterchainPotential_TCAP
)
get_name()
(in
StepWiseSamplerOneValueComb
)
get()
(in
MembraneCenPairEnergyAP
)
get()
(in
SpecialRotamerEnergyAP
)
get_name()
(in
StepWiseSamplerSized
)
get()
(in
MembraneCenPairEnergyCAP
)
get()
(in
SpecialRotamerEnergyCAP
)
get_name()
(in
StepWiseSamplerSizedAny
)
get()
(in
MembraneCenPairEnergyCreatorAP
)
get()
(in
SpecialRotamerEnergyCreatorAP
)
get_name()
(in
StepWiseSamplerSizedComb
)
get()
(in
MembraneCenPairEnergyCreatorCAP
)
get()
(in
SpecialRotamerEnergyCreatorCAP
)
get_name()
(in
CopyDofStepWiseSampler
)
get()
(in
MembraneEnvEnergyAP
)
get()
(in
GridSearchIteratorAP
)
get_name()
(in
ResidueAlternativeStepWiseSampler
)
get()
(in
MembraneEnvEnergyCAP
)
get()
(in
GridSearchIteratorCAP
)
get_name()
(in
ResidueAlternativeStepWiseSamplerComb
)
get()
(in
MembraneEnvEnergyCreatorAP
)
get()
(in
PCS_EnergyAP
)
get_name()
(in
ResidueListStepWiseSampler
)
get()
(in
MembraneEnvEnergyCreatorCAP
)
get()
(in
PCS_EnergyCAP
)
get_name()
(in
InputStreamStepWiseSampler
)
get()
(in
MembraneEnvPenaltiesAP
)
get()
(in
PCS_Energy_parameters_managerAP
)
get_name()
(in
ProteinBetaAntiParallelStepWiseSampler
)
get()
(in
MembraneEnvPenaltiesCAP
)
get()
(in
PCS_Energy_parameters_managerCAP
)
get_name()
(in
ProteinFragmentStepWiseSampler
)
get()
(in
MembraneEnvPenaltiesCreatorAP
)
get()
(in
PCS_dataAP
)
get_name()
(in
ProteinMainChainStepWiseSampler
)
get()
(in
MembraneEnvPenaltiesCreatorCAP
)
get()
(in
PCS_dataCAP
)
get_name()
(in
RigidBodyStepWiseSampler
)
get()
(in
MembraneEnvSmoothEnergyAP
)
get()
(in
PCS_data_inputAP
)
get_name()
(in
RigidBodyStepWiseSamplerWithResidueAlternatives
)
get()
(in
MembraneEnvSmoothEnergyCAP
)
get()
(in
PCS_data_inputCAP
)
get_name()
(in
RigidBodyStepWiseSamplerWithResidueList
)
get()
(in
MembraneEnvSmoothEnergyCreatorAP
)
get()
(in
PCS_data_input_managerAP
)
get_name()
(in
RNA_ChiStepWiseSampler
)
get()
(in
MembraneEnvSmoothEnergyCreatorCAP
)
get()
(in
PCS_data_input_managerCAP
)
get_name()
(in
RNA_KIC_Sampler
)
get()
(in
MembraneLipoAP
)
get()
(in
PCS_data_per_lanthanidesAP
)
get_name()
(in
RNA_KinematicCloser
)
get()
(in
MembraneLipoCAP
)
get()
(in
PCS_data_per_lanthanidesCAP
)
get_name()
(in
RNA_MC_MultiSuite
)
get()
(in
MembraneLipoCreatorAP
)
get()
(in
PCS_file_dataAP
)
get_name()
(in
RNA_MC_Sugar
)
get()
(in
MembraneLipoCreatorCAP
)
get()
(in
PCS_file_dataCAP
)
get_name()
(in
RNA_MC_Suite
)
get()
(in
MissingEnergyAP
)
get()
(in
PCS_line_dataAP
)
get_name()
(in
RNA_NucleosideStepWiseSampler
)
get()
(in
MissingEnergyCAP
)
get()
(in
PCS_line_dataCAP
)
get_name()
(in
RNA_SugarStepWiseSampler
)
get()
(in
MissingEnergyCreatorAP
)
get()
(in
PCS_tensorAP
)
get_name()
(in
RNA_SuiteStepWiseSampler
)
get()
(in
MissingEnergyCreatorCAP
)
get()
(in
PCS_tensorCAP
)
get_name()
(in
StepWiseCSA_JobDistributor
)
get()
(in
NMerPSSMEnergyAP
)
get()
(in
PseudocontactShiftEnergyCreatorAP
)
get_name()
(in
StepWiseJobDistributor
)
get()
(in
NMerPSSMEnergyCAP
)
get()
(in
PseudocontactShiftEnergyCreatorCAP
)
get_name()
(in
StepWiseMonteCarloJobDistributor
)
get()
(in
NMerPSSMEnergyCreatorAP
)
get()
(in
SingletonBase_T_protocols_scoring_methods_pcs_PCS_data_input_manager_TAP
)
get_name()
(in
CentroidRelaxMover
)
get()
(in
NMerPSSMEnergyCreatorCAP
)
get()
(in
SingletonBase_T_protocols_scoring_methods_pcs_PCS_data_input_manager_TCAP
)
get_name()
(in
FullatomRelaxMover
)
get()
(in
NMerRefEnergyAP
)
get()
(in
TensorsOptimizerAP
)
get_name()
(in
SurfaceDockingProtocol
)
get()
(in
NMerRefEnergyCAP
)
get()
(in
TensorsOptimizerCAP
)
get_name()
(in
SurfaceOrientMover
)
get()
(in
NMerRefEnergyCreatorAP
)
get()
(in
GridSearchIteratorAP
)
get_name()
(in
SymDockBaseProtocol
)
get()
(in
NMerRefEnergyCreatorCAP
)
get()
(in
GridSearchIteratorCAAP
)
get_name()
(in
SymDockProtocol
)
get()
(in
NMerSVMEnergyAP
)
get()
(in
GridSearchIteratorCACAP
)
get_name()
(in
SymDockingHiRes
)
get()
(in
NMerSVMEnergyCAP
)
get()
(in
GridSearchIteratorCAP
)
get_name()
(in
SymDockingLowRes
)
get()
(in
NMerSVMEnergyCreatorAP
)
get()
(in
PcsDataCenterAP
)
get_name()
(in
SymFoldandDockMoveRbJumpMover
)
get()
(in
NMerSVMEnergyCreatorCAP
)
get()
(in
PcsDataCenterCAP
)
get_name()
(in
SymFoldandDockRbTrialMover
)
get()
(in
OmegaTetherEnergyAP
)
get()
(in
PcsDataCenterManagerAP
)
get_name()
(in
SymFoldandDockSlideTrialMover
)
get()
(in
OmegaTetherEnergyCAP
)
get()
(in
PcsDataCenterManagerCAP
)
get_name()
(in
SymInterfaceSidechainMinMover
)
get()
(in
OmegaTetherEnergyCreatorAP
)
get()
(in
PcsDataCenterManagerSingletonAP
)
get_name()
(in
SymSidechainMinMover
)
get()
(in
OmegaTetherEnergyCreatorCAP
)
get()
(in
PcsDataCenterManagerSingletonCAP
)
get_name()
(in
MPSymDockMover
)
get()
(in
OneBodyEnergyAP
)
get()
(in
PcsDataLanthanideAP
)
get_name()
(in
AlignPoseToInvrotTreeMover
)
get()
(in
OneBodyEnergyCAP
)
get()
(in
PcsDataLanthanideCAP
)
get_name()
(in
StoreCombinedStoredTasksMover
)
get()
(in
OtherPoseEnergyAP
)
get()
(in
PcsEnergyAP
)
get_name()
(in
StoreCompoundTaskMover
)
get()
(in
OtherPoseEnergyCAP
)
get()
(in
PcsEnergyCAP
)
get_name()
(in
StoreTaskMover
)
get()
(in
OtherPoseEnergyCreatorAP
)
get()
(in
PcsEnergyCreatorAP
)
get_name()
(in
UnfoldedStateEnergyCalculatorMover
)
get()
(in
OtherPoseEnergyCreatorCAP
)
get()
(in
PcsEnergyCreatorCAP
)
get_name_individual_mover()
(in
RandomMover
)
get()
(in
PBLifetimeCacheAP
)
get()
(in
PcsEnergyParameterAP
)
get_native_pose()
(in
Mover
)
get()
(in
PBLifetimeCacheCAP
)
get()
(in
PcsEnergyParameterCAP
)
get_native_topology()
(in
PairingStatistics
)
get()
(in
P_AA_EnergyAP
)
get()
(in
PcsEnergyParameterManagerAP
)
get_natom()
(in
KClusterData
)
get()
(in
P_AA_EnergyCAP
)
get()
(in
PcsEnergyParameterManagerCAP
)
get_natoms()
(in
PQR
)
get()
(in
P_AA_EnergyCreatorAP
)
get()
(in
PcsGridSearchParameterAP
)
get_nbrs()
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
get()
(in
P_AA_EnergyCreatorCAP
)
get()
(in
PcsGridSearchParameterCAP
)
get_NCAA_rotamer_library()
(in
RotamerLibrary
)
get()
(in
P_AA_pp_EnergyAP
)
get()
(in
PcsGridSearchParameterManagerAP
)
get_ncaa_rotlib_n_bin_per_rot()
(in
ResidueType
)
get()
(in
P_AA_pp_EnergyCAP
)
get()
(in
PcsGridSearchParameterManagerCAP
)
get_ncaa_rotlib_n_rotameric_bins()
(in
ResidueType
)
get()
(in
P_AA_pp_EnergyCreatorAP
)
get()
(in
PcsInputCenterAP
)
get_ncaa_rotlib_path()
(in
ResidueType
)
get()
(in
P_AA_pp_EnergyCreatorCAP
)
get()
(in
PcsInputCenterCAP
)
get_Ncap_scores()
(in
HelixNCapperMover
)
get()
(in
PackStatEnergyAP
)
get()
(in
PcsInputCenterManagerAP
)
get_ndata()
(in
KClusterData
)
get()
(in
PackStatEnergyCAP
)
get()
(in
PcsInputCenterManagerCAP
)
get_ndata()
(in
KClusterElement
)
get()
(in
PackStatEnergyCreatorAP
)
get()
(in
PcsInputFileAP
)
get_ndx_list()
(in
KClusterElement
)
get()
(in
PackStatEnergyCreatorCAP
)
get()
(in
PcsInputFileCAP
)
get_near_interface_residues()
(in
Interface
)
get()
(in
PairEnergyAP
)
get()
(in
PcsInputLineAP
)
get_nearest_neighbour_esp_energy()
(in
NonPlaidFingerprint
)
get()
(in
PairEnergyCAP
)
get()
(in
PcsInputLineCAP
)
get_nearest_res_from_strand()
(in
StrandBundleFeatures
)
get()
(in
PairEnergyCreatorAP
)
get()
(in
PcsTensorAP
)
get_nearest_residue()
(in
HotspotStub
)
get()
(in
PairEnergyCreatorCAP
)
get()
(in
PcsTensorCAP
)
get_nearest_stub()
(in
HotspotStubSet
)
get()
(in
PeptideBondEnergyAP
)
get()
(in
SingletonBase_T_protocols_scoring_methods_pcs2_PcsEnergyParameterManager_TAP
)
get_negative_filters()
(in
BoltzmannFilter
)
get()
(in
PeptideBondEnergyCAP
)
get()
(in
SingletonBase_T_protocols_scoring_methods_pcs2_PcsEnergyParameterManager_TCAP
)
get_neighbor_atom()
(in
RNA_ChemicalShiftPotential
)
get()
(in
PeptideBondEnergyCreatorAP
)
get()
(in
SingletonBase_T_protocols_scoring_methods_pcs2_PcsGridSearchParameterManager_TAP
)
get_neighbor_graph()
(in
LocalRelax
)
get()
(in
PeptideBondEnergyCreatorCAP
)
get()
(in
SingletonBase_T_protocols_scoring_methods_pcs2_PcsGridSearchParameterManager_TCAP
)
get_neighbor_resis()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
PoissonBoltzmannEnergyAP
)
get()
(in
TensorsOptimizerAP
)
get_neighbor_subpose()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
PoissonBoltzmannEnergyCAP
)
get()
(in
TensorsOptimizerCAP
)
get_neighbor_subs()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
PoissonBoltzmannEnergyCreatorAP
)
get()
(in
TensorsOptimizerFixAP
)
get_neighbors()
(in
VIP_Mover
)
get()
(in
PoissonBoltzmannEnergyCreatorCAP
)
get()
(in
TensorsOptimizerFixCAP
)
get_net_sim()
(in
APCluster
)
get()
(in
ProClosureEnergyAP
)
get()
(in
TensorsOptimizerSvdAP
)
get_new_job_id()
(in
BOINCJobDistributor
)
get()
(in
ProClosureEnergyCAP
)
get()
(in
TensorsOptimizerSvdCAP
)
get_new_job_id()
(in
FileSystemJobDistributor
)
get()
(in
ProClosureEnergyCreatorAP
)
get()
(in
GridSearchIterator_Ts1AP
)
get_new_job_id()
(in
MPIFileBufJobDistributor
)
get()
(in
ProClosureEnergyCreatorCAP
)
get()
(in
GridSearchIterator_Ts1CAP
)
get_new_job_id()
(in
MPIMultiCommJobDistributor
)
get()
(in
ProQ_EnergyAP
)
get()
(in
PCS_Energy_Ts1AP
)
get_new_job_id()
(in
MPIWorkPartitionJobDistributor
)
get()
(in
ProQ_EnergyCAP
)
get()
(in
PCS_Energy_Ts1CAP
)
get_new_job_id()
(in
MPIWorkPoolJobDistributor
)
get()
(in
ProQ_EnergyCreatorAP
)
get()
(in
PCS_Energy_parameters_manager_Ts1AP
)
get_new_job_id()
(in
MSDJobDistributor
)
get()
(in
ProQ_EnergyCreatorCAP
)
get()
(in
PCS_Energy_parameters_manager_Ts1CAP
)
get_new_job_id()
(in
ShuffleFileSystemJobDistributor
)
get()
(in
PyEnergyMethodRegistratorAP
)
get()
(in
PCS_data_Ts1AP
)
get_new_JobInputter()
(in
JobInputterFactory
)
get()
(in
PyEnergyMethodRegistratorCAP
)
get()
(in
PCS_data_Ts1CAP
)
get_new_JobOutputter()
(in
JobOutputterFactory
)
get()
(in
RG_Energy_FastAP
)
get()
(in
PCS_data_input_Ts1AP
)
get_next_starting_res_for_connecting_strands()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
RG_Energy_FastCAP
)
get()
(in
PCS_data_input_Ts1CAP
)
get_njumps_subunit()
(in
SymmetryInfo
)
get()
(in
RG_Energy_FastCreatorAP
)
get()
(in
PCS_data_input_manager_Ts1AP
)
get_nmoves()
(in
RepeatMover
)
get()
(in
RG_Energy_FastCreatorCAP
)
get()
(in
PCS_data_input_manager_Ts1CAP
)
get_nNumber_hybrid_lone_pairs()
(in
GasteigerAtomTypeData
)
get()
(in
RG_LocalEnergyAP
)
get()
(in
PCS_data_per_lanthanides_Ts1AP
)
get_no_frags()
(in
AnchorMoversData
)
get()
(in
RG_LocalEnergyCAP
)
get()
(in
PCS_data_per_lanthanides_Ts1CAP
)
get_no_frags()
(in
AnchoredPerturbMover
)
get()
(in
RG_LocalEnergyCreatorAP
)
get()
(in
PCS_file_data_Ts1AP
)
get_node()
(in
Graph
)
get()
(in
RG_LocalEnergyCreatorCAP
)
get()
(in
PCS_file_data_Ts1CAP
)
get_node()
(in
InteractionGraphBase
)
get()
(in
RG_Local_MinDataAP
)
get()
(in
PCS_line_data_Ts1AP
)
get_node_index()
(in
Node
)
get()
(in
RG_Local_MinDataCAP
)
get()
(in
PCS_line_data_Ts1CAP
)
get_node_index()
(in
NodeBase
)
get()
(in
RG_MinDataAP
)
get()
(in
PCS_tensor_Ts1AP
)
get_nodes_from_same_flexseg()
(in
FlexbbEdge
)
get()
(in
RG_MinDataCAP
)
get()
(in
PCS_tensor_Ts1CAP
)
get_non_bb_clashing_rotamers()
(in
LigandBaseProtocol
)
get()
(in
RMS_EnergyAP
)
get()
(in
PseudocontactShiftEnergyCreator_Ts1AP
)
get_nonideal()
(in
RRProtocolRTMin
)
get()
(in
RMS_EnergyCAP
)
get()
(in
PseudocontactShiftEnergyCreator_Ts1CAP
)
get_nonideal()
(in
RRProtocolRelax
)
get()
(in
RMS_EnergyCreatorAP
)
get()
(in
TensorsOptimizer_Ts1AP
)
get_nonjump_atom()
(in
Atom
)
get()
(in
RMS_EnergyCreatorCAP
)
get()
(in
TensorsOptimizer_Ts1CAP
)
get_nonjump_atom()
(in
Atom_
)
get()
(in
Rama2BOffsetEnergyAP
)
get()
(in
GridSearchIterator_Ts2AP
)
get_nonpivot_torsion_sampling()
(in
AnchoredPerturbMover
)
get()
(in
Rama2BOffsetEnergyCAP
)
get()
(in
GridSearchIterator_Ts2CAP
)
get_nonpivot_torsion_sampling()
(in
AnchoredRefineMover
)
get()
(in
Rama2BOffsetEnergyCreatorAP
)
get()
(in
PCS_Energy_Ts2AP
)
get_nonzero_weighted_scoretypes()
(in
ScoreFunction
)
get()
(in
Rama2BOffsetEnergyCreatorCAP
)
get()
(in
PCS_Energy_Ts2CAP
)
get_norepack1()
(in
DockTaskFactory
)
get()
(in
RamachandranEnergy2BAP
)
get()
(in
PCS_Energy_parameters_manager_Ts2AP
)
get_norepack2()
(in
DockTaskFactory
)
get()
(in
RamachandranEnergy2BCAP
)
get()
(in
PCS_Energy_parameters_manager_Ts2CAP
)
get_normal_to_plane()
(in
EllipsoidalRandomizationMover
)
get()
(in
RamachandranEnergy2BCreatorAP
)
get()
(in
PCS_data_Ts2AP
)
get_normalization_factor()
(in
PCS_data_per_lanthanides
)
get()
(in
RamachandranEnergy2BCreatorCAP
)
get()
(in
PCS_data_Ts2CAP
)
get_normalization_factor()
(in
PcsDataLanthanide
)
get()
(in
RamachandranEnergyAP
)
get()
(in
PCS_data_input_Ts2AP
)
get_normalization_factor()
(in
PCS_data_per_lanthanides_Ts1
)
get()
(in
RamachandranEnergyCAP
)
get()
(in
PCS_data_input_Ts2CAP
)
get_normalization_factor()
(in
PCS_data_per_lanthanides_Ts2
)
get()
(in
RamachandranEnergyCreatorAP
)
get()
(in
PCS_data_input_manager_Ts2AP
)
get_normalization_factor()
(in
PCS_data_per_lanthanides_Ts3
)
get()
(in
RamachandranEnergyCreatorCAP
)
get()
(in
PCS_data_input_manager_Ts2CAP
)
get_normalization_factor()
(in
PCS_data_per_lanthanides_Ts4
)
get()
(in
ReferenceEnergyAP
)
get()
(in
PCS_data_per_lanthanides_Ts2AP
)
get_normalization_factor_inversed()
(in
PcsDataLanthanide
)
get()
(in
ReferenceEnergyCAP
)
get()
(in
PCS_data_per_lanthanides_Ts2CAP
)
get_nr_class()
(in
Svm_rosetta
)
get()
(in
ReferenceEnergyCreatorAP
)
get()
(in
PCS_file_data_Ts2AP
)
get_nr_frags()
(in
WeightedFragmentSmoothTrialMover
)
get()
(in
ReferenceEnergyCreatorCAP
)
get()
(in
PCS_file_data_Ts2CAP
)
get_nr_frags()
(in
WeightedFragmentTrialMover
)
get()
(in
ReferenceEnergyNoncanonicalAP
)
get()
(in
PCS_line_data_Ts2AP
)
get_nrchi_start_angle()
(in
ResidueType
)
get()
(in
ReferenceEnergyNoncanonicalCAP
)
get()
(in
PCS_line_data_Ts2CAP
)
get_nrchi_symmetric()
(in
ResidueType
)
get()
(in
ReferenceEnergyNoncanonicalCreatorAP
)
get()
(in
PCS_tensor_Ts2AP
)
get_nres_subunit()
(in
SymmetryInfo
)
get()
(in
ReferenceEnergyNoncanonicalCreatorCAP
)
get()
(in
PCS_tensor_Ts2CAP
)
get_nrounds()
(in
ShakeStructureMover
)
get()
(in
ResidualDipolarCouplingEnergyAP
)
get()
(in
PseudocontactShiftEnergyCreator_Ts2AP
)
get_Nstem_foldtree()
(in
GraftedStemOptimizer
)
get()
(in
ResidualDipolarCouplingEnergyCAP
)
get()
(in
PseudocontactShiftEnergyCreator_Ts2CAP
)
get_nterm_insert_flexibility()
(in
AnchoredGraftMover
)
get()
(in
ResidualDipolarCouplingEnergyCreatorAP
)
get()
(in
TensorsOptimizer_Ts2AP
)
get_nterm_scaffold_flexibility()
(in
AnchoredGraftMover
)
get()
(in
ResidualDipolarCouplingEnergyCreatorCAP
)
get()
(in
TensorsOptimizer_Ts2CAP
)
get_nterminal_peptide_bond_reference_frame()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
ResidualDipolarCouplingEnergy_RohlAP
)
get()
(in
GridSearchIterator_Ts3AP
)
get_nterminal_peptide_bond_reference_frame_atomids()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
ResidualDipolarCouplingEnergy_RohlCAP
)
get()
(in
GridSearchIterator_Ts3CAP
)
get_nth_pose()
(in
FastaInputter
)
get()
(in
ResidualDipolarCouplingEnergy_RohlCreatorAP
)
get()
(in
PCS_Energy_Ts3AP
)
get_nth_pose()
(in
Inputter
)
get()
(in
ResidualDipolarCouplingEnergy_RohlCreatorCAP
)
get()
(in
PCS_Energy_Ts3CAP
)
get_nth_pose()
(in
PDBInputter
)
get()
(in
ResidueCartBondedParametersAP
)
get()
(in
PCS_Energy_parameters_manager_Ts3AP
)
get_nth_pose()
(in
SilentFileInputter
)
get()
(in
ResidueCartBondedParametersCAP
)
get()
(in
PCS_Energy_parameters_manager_Ts3CAP
)
get_ntries_before_giving_up()
(in
GeneralizedKIC
)
get()
(in
SA_EnergyAP
)
get()
(in
PCS_data_Ts3AP
)
get_nu()
(in
MoveMap
)
get()
(in
SA_EnergyCAP
)
get()
(in
PCS_data_Ts3CAP
)
get_num_aa_types()
(in
OnTheFlyNode
)
get()
(in
SA_EnergyCreatorAP
)
get()
(in
PCS_data_input_Ts3AP
)
get_num_aa_types()
(in
FlexbbInteractionGraph
)
get()
(in
SA_EnergyCreatorCAP
)
get()
(in
PCS_data_input_Ts3CAP
)
get_num_aatypes()
(in
DensePDInteractionGraph
)
get()
(in
SecondaryStructureEnergyAP
)
get()
(in
PCS_data_input_manager_Ts3AP
)
get_num_aatypes()
(in
DoubleDensePDInteractionGraph
)
get()
(in
SecondaryStructureEnergyCAP
)
get()
(in
PCS_data_input_manager_Ts3CAP
)
get_num_aatypes()
(in
FASTERInteractionGraph
)
get()
(in
SecondaryStructureEnergyCreatorAP
)
get()
(in
PCS_data_per_lanthanides_Ts3AP
)
get_num_aatypes()
(in
FixedBBInteractionGraph
)
get()
(in
SecondaryStructureEnergyCreatorCAP
)
get()
(in
PCS_data_per_lanthanides_Ts3CAP
)
get_num_aatypes()
(in
OnTheFlyInteractionGraph
)
get()
(in
SequenceDependentRefEnergyAP
)
get()
(in
PCS_file_data_Ts3AP
)
get_num_aatypes()
(in
PDInteractionGraph
)
get()
(in
SequenceDependentRefEnergyCAP
)
get()
(in
PCS_file_data_Ts3CAP
)
get_num_aatypes()
(in
SymmOnTheFlyInteractionGraph
)
get()
(in
SequenceDependentRefEnergyCreatorAP
)
get()
(in
PCS_line_data_Ts3AP
)
get_num_atoms()
(in
RotamerDots
)
get()
(in
SequenceDependentRefEnergyCreatorCAP
)
get()
(in
PCS_line_data_Ts3CAP
)
get_num_bbs()
(in
RotData
)
get()
(in
ShortRangeTwoBodyEnergyAP
)
get()
(in
PCS_tensor_Ts3AP
)
get_num_bytes()
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
ShortRangeTwoBodyEnergyCAP
)
get()
(in
PCS_tensor_Ts3CAP
)
get_num_chi()
(in
RotData
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
PseudocontactShiftEnergyCreator_Ts3AP
)
get_num_clusters()
(in
RotData
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
PseudocontactShiftEnergyCreator_Ts3CAP
)
get_num_components()
(in
SymmData
)
get()
(in
SingletonBase_T_core_scoring_ScoringManager_TAP
)
get()
(in
TensorsOptimizer_Ts3AP
)
get_num_components()
(in
SymmetryInfo
)
get()
(in
SingletonBase_T_core_scoring_ScoringManager_TCAP
)
get()
(in
TensorsOptimizer_Ts3CAP
)
get_num_covered()
(in
DotSphere
)
get()
(in
SmoothCenPairEnergyAP
)
get()
(in
GridSearchIterator_Ts4AP
)
get_num_covered_total()
(in
RotamerDots
)
get()
(in
SmoothCenPairEnergyCAP
)
get()
(in
GridSearchIterator_Ts4CAP
)
get_num_decoys_used_in_calculations()
(in
ddGMover
)
get()
(in
SmoothCenPairEnergyCreatorAP
)
get()
(in
PCS_Energy_Ts4AP
)
get_num_digits()
(in
rosetta.utility._utility_
)
get()
(in
SmoothCenPairEnergyCreatorCAP
)
get()
(in
PCS_Energy_Ts4CAP
)
get_num_distinct_backbones()
(in
FlexbbNode
)
get()
(in
SmoothEnvEnergyAP
)
get()
(in
PCS_Energy_parameters_manager_Ts4AP
)
get_num_edges()
(in
InteractionGraphBase
)
get()
(in
SmoothEnvEnergyCAP
)
get()
(in
PCS_Energy_parameters_manager_Ts4CAP
)
get_num_edges_to_larger_indexed_nodes()
(in
Node
)
get()
(in
SmoothEnvEnergyCreatorAP
)
get()
(in
PCS_data_Ts4AP
)
get_num_edges_to_larger_indexed_nodes()
(in
NodeBase
)
get()
(in
SmoothEnvEnergyCreatorCAP
)
get()
(in
PCS_data_Ts4CAP
)
get_num_edges_to_smaller_indexed_nodes()
(in
Node
)
get()
(in
SuckerEnergyAP
)
get()
(in
PCS_data_input_Ts4AP
)
get_num_edges_to_smaller_indexed_nodes()
(in
NodeBase
)
get()
(in
SuckerEnergyCAP
)
get()
(in
PCS_data_input_Ts4CAP
)
get_num_exemplars()
(in
APCluster
)
get()
(in
SuckerEnergyCreatorAP
)
get()
(in
PCS_data_input_manager_Ts4AP
)
get_num_incident_edges()
(in
NodeBase
)
get()
(in
SuckerEnergyCreatorCAP
)
get()
(in
PCS_data_input_manager_Ts4CAP
)
get_num_interface_residues()
(in
InterfaceAnalyzerMover
)
get()
(in
SymmetricLigandEnergyAP
)
get()
(in
PCS_data_per_lanthanides_Ts4AP
)
get_num_iterations()
(in
DbTrajectoryReader
)
get()
(in
SymmetricLigandEnergyCAP
)
get()
(in
PCS_data_per_lanthanides_Ts4CAP
)
get_num_iterations()
(in
DbTrajectoryReader
)
get()
(in
SymmetricLigandEnergyCreatorAP
)
get()
(in
PCS_file_data_Ts4AP
)
get_num_nodes()
(in
InteractionGraphBase
)
get()
(in
SymmetricLigandEnergyCreatorCAP
)
get()
(in
PCS_file_data_Ts4CAP
)
get_num_nodes_v()
(in
InteractionGraphBase
)
get()
(in
TwoBodyEnergyAP
)
get()
(in
PCS_line_data_Ts4AP
)
get_num_of_distinct_sheet_id()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
TwoBodyEnergyCAP
)
get()
(in
PCS_line_data_Ts4CAP
)
get_num_of_sheets_that_surround_this_sheet()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
UnfoldedStateEnergyAP
)
get()
(in
PCS_tensor_Ts4AP
)
get_num_points()
(in
SplineGenerator
)
get()
(in
UnfoldedStateEnergyCAP
)
get()
(in
PCS_tensor_Ts4CAP
)
get_num_res_types()
(in
SymmOnTheFlyNode
)
get()
(in
UnfoldedStateEnergyCreatorAP
)
get()
(in
PseudocontactShiftEnergyCreator_Ts4AP
)
get_num_residues_nonvirt()
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
get()
(in
UnfoldedStateEnergyCreatorCAP
)
get()
(in
PseudocontactShiftEnergyCreator_Ts4CAP
)
get_num_residues_prot()
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
get()
(in
WaterAdductHBondEnergyAP
)
get()
(in
TensorsOptimizer_Ts4AP
)
get_num_restype_groups()
(in
SymmOnTheFlyInteractionGraph
)
get()
(in
WaterAdductHBondEnergyCAP
)
get()
(in
TensorsOptimizer_Ts4CAP
)
get_num_restype_groups()
(in
SymmOnTheFlyNode
)
get()
(in
WaterAdductHBondEnergyCreatorAP
)
get()
(in
PDDFEnergyAP
)
get_num_rpe_calculations_count()
(in
OnTheFlyInteractionGraph
)
get()
(in
WaterAdductHBondEnergyCreatorCAP
)
get()
(in
PDDFEnergyCAP
)
get_num_rpe_calculations_count()
(in
SymmOnTheFlyInteractionGraph
)
get()
(in
WaterAdductIntraEnergyAP
)
get()
(in
PDDFEnergyCreatorAP
)
get_num_sampled()
(in
StepWiseModeler
)
get()
(in
WaterAdductIntraEnergyCAP
)
get()
(in
PDDFEnergyCreatorCAP
)
get_num_states()
(in
NodeBase
)
get()
(in
WaterAdductIntraEnergyCreatorAP
)
get()
(in
CAcstGeneratorAP
)
get_num_states_for_aa_type()
(in
OnTheFlyNode
)
get()
(in
WaterAdductIntraEnergyCreatorCAP
)
get()
(in
CAcstGeneratorCAP
)
get_num_states_for_aa_type()
(in
PDNode
)
get()
(in
WaterBuilderAP
)
get()
(in
CAcstGeneratorCreatorAP
)
get_num_states_for_aa_type_for_bb()
(in
FlexbbNode
)
get()
(in
WaterBuilderCAP
)
get()
(in
CAcstGeneratorCreatorCAP
)
get_num_states_for_aa_types()
(in
OnTheFlyNode
)
get()
(in
WholeStructureEnergyAP
)
get()
(in
CloseFoldAP
)
get_num_states_for_aa_types()
(in
PDNode
)
get()
(in
WholeStructureEnergyCAP
)
get()
(in
CloseFoldCAP
)
get_num_states_for_bb()
(in
FlexbbNode
)
get()
(in
YHHPlanarityEnergyAP
)
get()
(in
CloseFoldCreatorAP
)
get_num_states_for_node()
(in
InteractionGraphBase
)
get()
(in
YHHPlanarityEnergyCAP
)
get()
(in
CloseFoldCreatorCAP
)
get_num_states_for_restype_group()
(in
SymmOnTheFlyNode
)
get()
(in
YHHPlanarityEnergyCreatorAP
)
get()
(in
CoordinateCstAP
)
get_num_states_per_backbone_for_node()
(in
FlexbbInteractionGraph
)
get()
(in
YHHPlanarityEnergyCreatorCAP
)
get()
(in
CoordinateCstCAP
)
get_num_strands_in_this_sheet()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
pHEnergyAP
)
get()
(in
CoordinateCstCreatorAP
)
get_num_total_states()
(in
InteractionGraphBase
)
get()
(in
pHEnergyCAP
)
get()
(in
CoordinateCstCreatorCAP
)
get_num_uncovered()
(in
DotSphere
)
get()
(in
pHEnergyCreatorAP
)
get()
(in
DefineMovableLoopsAP
)
get_num_uncovered()
(in
RotamerDots
)
get()
(in
pHEnergyCreatorCAP
)
get()
(in
DefineMovableLoopsCAP
)
get_num_unrecognized_atoms()
(in
PDBInfo
)
get()
(in
SugarBackboneEnergyAP
)
get()
(in
DefineMovableLoopsCreatorAP
)
get_num_unrecognized_res()
(in
PDBInfo
)
get()
(in
SugarBackboneEnergyCAP
)
get()
(in
DefineMovableLoopsCreatorCAP
)
get_num_virtual()
(in
SymmData
)
get()
(in
SugarBackboneEnergyCreatorAP
)
get()
(in
GrowPeptidesAP
)
get_number_base_stacks()
(in
rosetta.core.pose.rna._core_pose_rna_
)
get()
(in
SugarBackboneEnergyCreatorCAP
)
get()
(in
GrowPeptidesCAP
)
get_number_bonds()
(in
GasteigerAtomTypeData
)
get()
(in
DFIRE_EnergyAP
)
get()
(in
GrowPeptidesCreatorAP
)
get_number_electrons_in_bonds()
(in
GasteigerAtomTypeData
)
get()
(in
DFIRE_EnergyCAP
)
get()
(in
GrowPeptidesCreatorCAP
)
get_number_electrons_in_p_orbitals()
(in
GasteigerAtomTypeData
)
get()
(in
DFIRE_EnergyCreatorAP
)
get()
(in
SeedFoldTreeAP
)
get_number_hybrid_bonds()
(in
GasteigerAtomTypeData
)
get()
(in
DFIRE_EnergyCreatorCAP
)
get()
(in
SeedFoldTreeCAP
)
get_number_hybrid_orbitals()
(in
GasteigerAtomTypeData
)
get()
(in
DFIRE_PotentialAP
)
get()
(in
SeedFoldTreeCreatorAP
)
get_number_missing_residues_and_connections()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
get()
(in
DFIRE_PotentialCAP
)
get()
(in
SeedFoldTreeCreatorCAP
)
get_number_of_histograms()
(in
OrbitalsStatistics
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
SeedSetupMoverAP
)
get_number_pi_orbitals()
(in
GasteigerAtomTypeData
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
SeedSetupMoverCAP
)
get_number_sigma_orbitals()
(in
GasteigerAtomTypeData
)
get()
(in
MMBondAngleLibraryAP
)
get()
(in
SeedSetupMoverCreatorAP
)
get_number_unhybridized_lone_pairs()
(in
GasteigerAtomTypeData
)
get()
(in
MMBondAngleLibraryCAP
)
get()
(in
SeedSetupMoverCreatorCAP
)
get_number_unhybridized_sigma_orbitals()
(in
GasteigerAtomTypeData
)
get()
(in
MMBondAngleResidueTypeParamAP
)
get()
(in
SegmentHybridizerAP
)
get_numeric_property()
(in
ResidueType
)
get()
(in
MMBondAngleResidueTypeParamCAP
)
get()
(in
SegmentHybridizerCAP
)
get_NVLookupTable()
(in
ScoringManager
)
get()
(in
MMBondAngleResidueTypeParamSet
)
get()
(in
SegmentHybridizerCreatorAP
)
get_obligate_pairing_sets()
(in
RNA_StructureParameters
)
get()
(in
MMBondAngleResidueTypeParamSetAP
)
get()
(in
SegmentHybridizerCreatorCAP
)
get_occupancy_densities()
(in
RNA_DMS_Potential
)
get()
(in
MMBondAngleResidueTypeParamSetCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_occupancy_density()
(in
RNA_DMS_Potential
)
get()
(in
MMBondAngleScoreAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_oegrid_dimensions()
(in
ElectrostaticpotentialGrid
)
get()
(in
MMBondAngleScoreCAP
)
get()
(in
SwapSegmentAP
)
get_offset()
(in
AtomPairConstraintsData
)
get()
(in
MMBondLengthLibraryAP
)
get()
(in
SwapSegmentCAP
)
get_offset_table_size_in_bytes()
(in
AminoAcidNeighborSparseMatrix_T_float_T
)
get()
(in
MMBondLengthLibraryCAP
)
get()
(in
SwapSegmentCreatorAP
)
get_offsets_for_aatypes()
(in
LazyEdge
)
get()
(in
MMBondLengthScoreAP
)
get()
(in
SwapSegmentCreatorCAP
)
get_offsets_for_aatypes()
(in
PDEdge
)
get()
(in
MMBondLengthScoreCAP
)
get()
(in
AtomIDHashFunctionAP
)
get_OmegaTether()
(in
ScoringManager
)
get()
(in
MMLJEnergyTableAP
)
get()
(in
AtomIDHashFunctionCAP
)
get_omg()
(in
MakeRotLibJob
)
get()
(in
MMLJEnergyTableCAP
)
get()
(in
BuriedPolarScoreAP
)
get_omg()
(in
RotData
)
get()
(in
MMLJLibraryAP
)
get()
(in
BuriedPolarScoreCAP
)
get_omg_from_rsd()
(in
SingleResiduePeptoidLibrary
)
get()
(in
MMLJLibraryCAP
)
get()
(in
CBScoreAP
)
get_omg_range()
(in
MakeRotLibOptionsData
)
get()
(in
MMLJScoreAP
)
get()
(in
CBScoreCAP
)
get_on_the_fly_node()
(in
SymmOnTheFlyInteractionGraph
)
get()
(in
MMLJScoreCAP
)
get()
(in
ConstraintSetScoreAP
)
get_on_the_fly_owner()
(in
SymmOnTheFlyNode
)
get()
(in
MMTorsionLibraryAP
)
get()
(in
ConstraintSetScoreCAP
)
get_one_body_energy()
(in
DensePDNode
)
get()
(in
MMTorsionLibraryCAP
)
get()
(in
EdgeStandScoreAP
)
get_one_body_energy()
(in
DoubleDensePDNode
)
get()
(in
MMTorsionScoreAP
)
get()
(in
EdgeStandScoreCAP
)
get_one_body_energy()
(in
FASTERNode
)
get()
(in
MMTorsionScoreCAP
)
get()
(in
HelixScoreAP
)
get_one_body_energy()
(in
OnTheFlyNode
)
get()
(in
MMEnergyTableAtomAP
)
get()
(in
HelixScoreCAP
)
get_one_body_energy()
(in
PDNode
)
get()
(in
MMEnergyTableAtomCAP
)
get()
(in
JointScoreAP
)
get_one_body_energy()
(in
SymmOnTheFlyNode
)
get()
(in
MotifHashAP
)
get()
(in
JointScoreCAP
)
get_one_body_energy()
(in
FlexbbNode
)
get()
(in
MotifHashCAP
)
get()
(in
LinkerScoreAP
)
get_one_body_energy_current_state()
(in
DensePDNode
)
get()
(in
MotifHashManagerAP
)
get()
(in
LinkerScoreCAP
)
get_one_body_energy_current_state()
(in
DoubleDensePDNode
)
get()
(in
MotifHashManagerCAP
)
get()
(in
RigidScoreAP
)
get_one_body_energy_current_state()
(in
DoubleLazyNode
)
get()
(in
MotifHitAP
)
get()
(in
RigidScoreCAP
)
get_one_body_energy_current_state()
(in
FASTERNode
)
get()
(in
MotifHitCAP
)
get()
(in
RoseAP
)
get_one_body_energy_current_state()
(in
LazyNode
)
get()
(in
MotifHitStatsAP
)
get()
(in
RoseCAP
)
get_one_body_energy_current_state()
(in
LinearMemNode
)
get()
(in
MotifHitStatsCAP
)
get()
(in
SICFastAP
)
get_one_body_energy_current_state()
(in
PDNode
)
get()
(in
MotifHitsAP
)
get()
(in
SICFastCAP
)
get_one_body_energy_current_state()
(in
SymmLinearMemNode
)
get()
(in
MotifHitsCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_one_body_energy_current_state()
(in
SymmMinimalistNode
)
get()
(in
RPM_FilterStatsAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_one_body_energy_for_node_state()
(in
DensePDInteractionGraph
)
get()
(in
RPM_FilterStatsCAP
)
get()
(in
Vec3AP
)
get_one_body_energy_for_node_state()
(in
DoubleDensePDInteractionGraph
)
get()
(in
ResPairMotifAP
)
get()
(in
Vec3CAP
)
get_one_body_energy_for_node_state()
(in
FASTERInteractionGraph
)
get()
(in
ResPairMotifCAP
)
get()
(in
XfoxmScoreAP
)
get_one_body_energy_for_node_state()
(in
InteractionGraphBase
)
get()
(in
ResPairMotifMetaBinnerAP
)
get()
(in
XfoxmScoreCAP
)
get_one_body_energy_for_node_state()
(in
OnTheFlyInteractionGraph
)
get()
(in
ResPairMotifMetaBinnerCAP
)
get()
(in
xyzStripeHashPoseWithMetaAP
)
get_one_body_energy_for_node_state()
(in
PDInteractionGraph
)
get()
(in
ResPairMotifQueryAP
)
get()
(in
xyzStripeHashPoseWithMetaCAP
)
get_one_body_energy_for_node_state()
(in
SymmOnTheFlyInteractionGraph
)
get()
(in
ResPairMotifQueryCAP
)
get()
(in
MotifHashRigidScoreAP
)
get_one_body_energy_for_node_state()
(in
MinimalistFlexbbInteractionGraph
)
get()
(in
ResPairMotifsAP
)
get()
(in
MotifHashRigidScoreCAP
)
get_one_body_energy_for_relaxed_state()
(in
FASTERNode
)
get()
(in
ResPairMotifsCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_one_letter_name()
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_one_template_pose()
(in
Ab_TemplateInfo
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
TrisBpyScoreAP
)
get_op2_op1_sign()
(in
rosetta.protocols.farna._protocols_farna_
)
get()
(in
XformScoreAP
)
get()
(in
TrisBpyScoreCAP
)
get_open_mode()
(in
FileListResourceLocator
)
get()
(in
XformScoreCAP
)
get()
(in
AbinitioBaseFilterAP
)
get_open_mode()
(in
FileSystemResourceLocator
)
get()
(in
XfragAP
)
get()
(in
AbinitioBaseFilterCAP
)
get_optimize_cyclic_threshold()
(in
PeptideDeriverFilter
)
get()
(in
XfragCAP
)
get()
(in
AlaScanAP
)
get_option()
(in
JobOptions
)
get()
(in
XfragSetAP
)
get()
(in
AlaScanCAP
)
get_option()
(in
ResourceManager
)
get()
(in
XfragSetCAP
)
get()
(in
AlaScanFilterCreatorAP
)
get_option()
(in
JD2ResourceManager
)
get()
(in
XfresAP
)
get()
(in
AlaScanFilterCreatorCAP
)
get_options()
(in
WorkUnitBase
)
get()
(in
XfresCAP
)
get()
(in
AngleToVectorAP
)
get_options_data()
(in
MakeRotLibJob
)
get()
(in
NVlookupAP
)
get()
(in
AngleToVectorCAP
)
get_orb_H_distance_and_energy()
(in
OrbitalsScore
)
get()
(in
NVlookupCAP
)
get()
(in
AngleToVectorFilterCreatorAP
)
get_orb_orb_E()
(in
OrbitalsScore
)
get()
(in
NVscoreAP
)
get()
(in
AngleToVectorFilterCreatorCAP
)
get_orbital_E_neg_pos()
(in
GasteigerAtomTypeData
)
get()
(in
NVscoreCAP
)
get()
(in
AtomicContactFilterAP
)
get_orbital_enum()
(in
OrbitalTypeMapper
)
get()
(in
NVscoreCreatorAP
)
get()
(in
AtomicContactFilterCAP
)
get_OrbitalsLookupTable()
(in
ScoringManager
)
get()
(in
NVscoreCreatorCAP
)
get()
(in
AtomicContactFilterCreatorAP
)
get_orientation()
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
OrbitalsLookupAP
)
get()
(in
AtomicContactFilterCreatorCAP
)
get_orientation()
(in
LeGrandSasa
)
get()
(in
OrbitalsLookupCAP
)
get()
(in
AtomicDistanceFilterAP
)
get_orientation_from_num()
(in
rosetta.core.chemical.rna._core_chemical_rna_
)
get()
(in
OrbitalsScoreAP
)
get()
(in
AtomicDistanceFilterCAP
)
get_oriented_pose()
(in
PlaidFingerprint
)
get()
(in
OrbitalsScoreCAP
)
get()
(in
AtomicDistanceFilterCreatorAP
)
get_origin()
(in
VirtualCoordinate
)
get()
(in
OrbitalsScoreCreatorAP
)
get()
(in
AtomicDistanceFilterCreatorCAP
)
get_original_pose_rsd()
(in
rosetta.protocols.generalized_kinematic_closure._protocols_generalized_kinematic_closure_
)
get()
(in
OrbitalsScoreCreatorCAP
)
get()
(in
AveragePathLengthFilterAP
)
get_original_residue()
(in
ResidueLevelTask
)
get()
(in
OrbitalsStatisticsAP
)
get()
(in
AveragePathLengthFilterCAP
)
get_original_residue()
(in
ResidueLevelTask_
)
get()
(in
OrbitalsStatisticsCAP
)
get()
(in
AveragePathLengthFilterCreatorAP
)
get_original_residue_set()
(in
ResidueLevelTask
)
get()
(in
BallAP
)
get()
(in
AveragePathLengthFilterCreatorCAP
)
get_original_residue_set()
(in
ResidueLevelTask_
)
get()
(in
BallCAP
)
get()
(in
BatchEvaluatorAP
)
get_ostream()
(in
Inline_File_Provider
)
get()
(in
HolesEnergyAP
)
get()
(in
BatchEvaluatorCAP
)
get_other_ind()
(in
Edge
)
get()
(in
HolesEnergyCAP
)
get()
(in
BatchNrEvaluatorAP
)
get_other_ind()
(in
EdgeBase
)
get()
(in
HolesEnergyCreatorAP
)
get()
(in
BatchNrEvaluatorCAP
)
get_other_node()
(in
Edge
)
get()
(in
HolesEnergyCreatorCAP
)
get()
(in
BuriedUnsatHbondFilterAP
)
get_other_node()
(in
EdgeBase
)
get()
(in
HolesEnergyResAP
)
get()
(in
BuriedUnsatHbondFilterCAP
)
get_other_poses()
(in
rosetta.protocols.stepwise.setup._protocols_stepwise_setup_
)
get()
(in
HolesEnergyResCAP
)
get()
(in
BuriedUnsatHbondFilterCreatorAP
)
get_out()
(in
FilterReporterMover
)
get()
(in
HolesParamsAP
)
get()
(in
BuriedUnsatHbondFilterCreatorCAP
)
get_out_tag()
(in
rosetta.protocols.vip._protocols_vip_
)
get()
(in
HolesParamsCAP
)
get()
(in
COFilterAP
)
get_outeriterations()
(in
SimAnnealerBase
)
get()
(in
HolesParamsResAP
)
get()
(in
COFilterCAP
)
get_outgoing_edges()
(in
FoldTree
)
get()
(in
HolesParamsResCAP
)
get()
(in
CamShiftEvaluatorAP
)
get_output_filename()
(in
BaseJobDistributor
)
get()
(in
HolesResultAP
)
get()
(in
CamShiftEvaluatorCAP
)
get_output_filename()
(in
PlainPdbJobDistributor
)
get()
(in
HolesResultCAP
)
get()
(in
CamShiftEvaluatorCreatorAP
)
get_output_filename()
(in
PlainRawJobDistributor
)
get()
(in
PoseBallsAP
)
get()
(in
CamShiftEvaluatorCreatorCAP
)
get_output_filename()
(in
PlainSilentFileJobDistributor
)
get()
(in
PoseBallsCAP
)
get()
(in
ChiWellRmsdEvaluatorAP
)
get_output_level()
(in
RRReporterSQLite
)
get()
(in
PoseBallsLiteAP
)
get()
(in
ChiWellRmsdEvaluatorCAP
)
get_output_subunit()
(in
SymmData
)
get()
(in
PoseBallsLiteCAP
)
get()
(in
ChiWellRmsdEvaluatorCreatorAP
)
get_output_tag()
(in
PlainRawJobDistributor
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
ChiWellRmsdEvaluatorCreatorCAP
)
get_output_tag()
(in
PlainSilentFileJobDistributor
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
ConservedPosMutationFilterAP
)
get_output_tag()
(in
rosetta.protocols.jobdist._protocols_jobdist_
)
get()
(in
SurfEnergyAP
)
get()
(in
ConservedPosMutationFilterCAP
)
get_overlap()
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
SurfEnergyCAP
)
get()
(in
ConservedPosMutationFilterCreatorAP
)
get_overlap()
(in
LeGrandSasa
)
get()
(in
SurfEnergyCreatorAP
)
get()
(in
ConservedPosMutationFilterCreatorCAP
)
get_owner()
(in
EdgeBase
)
get()
(in
SurfEnergyCreatorCAP
)
get()
(in
ConstraintScoreCutoffFilterAP
)
get_P_AA()
(in
ScoringManager
)
get()
(in
SurfVolAP
)
get()
(in
ConstraintScoreCutoffFilterCAP
)
get_Paa_pp_deriv()
(in
P_AA
)
get()
(in
SurfVolCAP
)
get()
(in
ConstraintScoreCutoffFilterCreatorAP
)
get_pack_input()
(in
InterfaceAnalyzerMover
)
get()
(in
SurfVolDerivAP
)
get()
(in
ConstraintScoreCutoffFilterCreatorCAP
)
get_packer()
(in
rosetta.protocols.stepwise.modeler.packer._protocols_stepwise_modeler_packer_
)
get()
(in
SurfVolDerivCAP
)
get()
(in
ContactMapEvaluatorAP
)
get_packer_task()
(in
ClashBasedRepackShellSelector
)
get()
(in
SurfVolEnergyAP
)
get()
(in
ContactMapEvaluatorCAP
)
get_packer_task()
(in
CoupledMover
)
get()
(in
SurfVolEnergyCAP
)
get()
(in
ContactMapEvaluatorCreatorAP
)
get_PackingAngleResidues()
(in
AntibodyInfo
)
get()
(in
SurfVolEnergyCreatorAP
)
get()
(in
ContactMapEvaluatorCreatorCAP
)
get_pair()
(in
StrandPairing
)
get()
(in
SurfVolEnergyCreatorCAP
)
get()
(in
DdGScanAP
)
get_PairEPotential()
(in
ScoringManager
)
get()
(in
AccumulatorAP
)
get()
(in
DdGScanCAP
)
get_pairing()
(in
JumpSample
)
get()
(in
AccumulatorCAP
)
get()
(in
DdGScanCreatorAP
)
get_pairing_geometry()
(in
rosetta.core.scoring.dssp._core_scoring_dssp_
)
get()
(in
AreaAccumulatorAP
)
get()
(in
DdGScanCreatorCAP
)
get_pairing_geometry()
(in
rosetta.protocols.jumping._protocols_jumping_
)
get()
(in
AreaAccumulatorCAP
)
get()
(in
DdgFilterAP
)
get_pairings_residues()
(in
FoldTreeHybridize
)
get()
(in
Array2DAP
)
get()
(in
DdgFilterCAP
)
get_parallel_weight()
(in
SecondaryStructureWeights
)
get()
(in
Array2DCAP
)
get()
(in
DdgFilterCreatorAP
)
get_parameter()
(in
FullModelParameters
)
get()
(in
AtomRadiusMapAP
)
get()
(in
DdgFilterCreatorCAP
)
get_parameter_as_res_lists()
(in
FullModelParameters
)
get()
(in
AtomRadiusMapCAP
)
get()
(in
DeltaFilterAP
)
get_parameters()
(in
JCouplingIO
)
get()
(in
CavityBallAP
)
get()
(in
DeltaFilterCAP
)
get_parameters()
(in
RRComparer
)
get()
(in
CavityBallCAP
)
get()
(in
DeltaFilterCreatorAP
)
get_parameters()
(in
RRComparerAutomorphicRMSD
)
get()
(in
CavityBallClusterAP
)
get()
(in
DeltaFilterCreatorCAP
)
get_parameters()
(in
RRComparerChiDiff
)
get()
(in
CavityBallClusterCAP
)
get()
(in
DisulfideEntropyFilterAP
)
get_parameters()
(in
RRComparerElecDensDiff
)
get()
(in
CircleAP
)
get()
(in
DisulfideEntropyFilterCAP
)
get_parameters()
(in
RRComparerRotBins
)
get()
(in
CircleCAP
)
get()
(in
DisulfideEntropyFilterCreatorAP
)
get_parameters()
(in
RRProtocol
)
get()
(in
EventAP
)
get()
(in
DisulfideEntropyFilterCreatorCAP
)
get_parameters()
(in
RRProtocolMinPack
)
get()
(in
EventCAP
)
get()
(in
DomainInterfaceFilterAP
)
get_parameters()
(in
RRProtocolMover
)
get()
(in
LR_AtomDataAP
)
get()
(in
DomainInterfaceFilterCAP
)
get_parameters()
(in
RRProtocolPackRotamers
)
get()
(in
LR_AtomDataCAP
)
get()
(in
EnergyPerResidueFilterAP
)
get_parameters()
(in
RRProtocolRTMin
)
get()
(in
LR_MP_AtomDataAP
)
get()
(in
EnergyPerResidueFilterCAP
)
get_parameters()
(in
RRProtocolReferenceStructure
)
get()
(in
LR_MP_AtomDataCAP
)
get()
(in
EnergyPerResidueFilterCreatorAP
)
get_parameters()
(in
RRProtocolRelax
)
get()
(in
LeeRichardsAP
)
get()
(in
EnergyPerResidueFilterCreatorCAP
)
get_parameters()
(in
RRProtocolRotamerTrials
)
get()
(in
LeeRichardsCAP
)
get()
(in
EvaluatedTrialMoverAP
)
get_parametric_info()
(in
FileData
)
get()
(in
MultiProbePerSphereAccumulatorAP
)
get()
(in
EvaluatedTrialMoverCAP
)
get_params()
(in
Scheduler
)
get()
(in
MultiProbePerSphereAccumulatorCAP
)
get()
(in
ExpiryFilterAP
)
get_parent()
(in
SmallMol
)
get()
(in
MultiProbePoseAccumulatorAP
)
get()
(in
ExpiryFilterCAP
)
get_parent_jump()
(in
SymmData
)
get()
(in
MultiProbePoseAccumulatorCAP
)
get()
(in
ExpiryFilterCreatorAP
)
get_parent_remark()
(in
SilentStruct
)
get()
(in
Octree2DAP
)
get()
(in
ExpiryFilterCreatorCAP
)
get_parent_remark_from_line()
(in
SilentStruct
)
get()
(in
Octree2DCAP
)
get()
(in
ExternalEvaluatorAP
)
get_parent_residue()
(in
FoldTree
)
get()
(in
OrderCBCAP
)
get()
(in
ExternalEvaluatorCAP
)
get_parent_virtual()
(in
SymmData
)
get()
(in
OrderCBCCAP
)
get()
(in
ExtraScoreEvaluatorCreatorAP
)
get_partition_definition()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
get()
(in
PackingScoreAP
)
get()
(in
ExtraScoreEvaluatorCreatorCAP
)
get_partition_definition_by_jump()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
get()
(in
PackingScoreCAP
)
get()
(in
FileExistFilterAP
)
get_partition_definition_floating_base()
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
get()
(in
PackingScoreResDataAP
)
get()
(in
FileExistFilterCAP
)
get_partner_residue_start_stop()
(in
EllipsoidalRandomizationMover
)
get()
(in
PackingScoreResDataCAP
)
get()
(in
FileExistFilterCreatorAP
)
get_path_from_root()
(in
Atom
)
get()
(in
PerSphereAccumulatorAP
)
get()
(in
FileExistFilterCreatorCAP
)
get_pbp()
(in
PBLifetimeCache
)
get()
(in
PerSphereAccumulatorCAP
)
get()
(in
FileRemoveFilterAP
)
get_PCS_data_all()
(in
PcsDataCenterManager
)
get()
(in
PointAP
)
get()
(in
FileRemoveFilterCAP
)
get_PCS_data_all()
(in
PcsDataCenterManagerSingleton
)
get()
(in
PointCAP
)
get()
(in
FileRemoveFilterCreatorAP
)
get_PCS_data_input_reference()
(in
PCS_data_input
)
get()
(in
PointPairAP
)
get()
(in
FileRemoveFilterCreatorCAP
)
get_PCS_data_input_reference()
(in
PCS_data_input_Ts1
)
get()
(in
PointPairCAP
)
get()
(in
GeometryFilterAP
)
get_PCS_data_input_reference()
(in
PCS_data_input_Ts2
)
get()
(in
PosePackDataAP
)
get()
(in
GeometryFilterCAP
)
get_PCS_data_input_reference()
(in
PCS_data_input_Ts3
)
get()
(in
PosePackDataCAP
)
get()
(in
GeometryFilterCreatorAP
)
get_PCS_data_input_reference()
(in
PCS_data_input_Ts4
)
get()
(in
SasaOptionsAP
)
get()
(in
GeometryFilterCreatorCAP
)
get_PCS_data_line_all_reference()
(in
PCS_file_data
)
get()
(in
SasaOptionsCAP
)
get()
(in
HolesFilterAP
)
get_PCS_data_line_all_reference()
(in
PCS_file_data_Ts1
)
get()
(in
SasaResultAP
)
get()
(in
HolesFilterCAP
)
get_PCS_data_line_all_reference()
(in
PCS_file_data_Ts2
)
get()
(in
SasaResultCAP
)
get()
(in
HolesFilterCreatorAP
)
get_PCS_data_line_all_reference()
(in
PCS_file_data_Ts3
)
get()
(in
SimplePDBAP
)
get()
(in
HolesFilterCreatorCAP
)
get_PCS_data_line_all_reference()
(in
PCS_file_data_Ts4
)
get()
(in
SimplePDBCAP
)
get()
(in
InterRepeatContactFilterAP
)
get_PCS_data_line_all_spin()
(in
PCS_data
)
get()
(in
SimplePDB_AtomAP
)
get()
(in
InterRepeatContactFilterCAP
)
get_PCS_data_line_all_spin()
(in
PcsDataCenter
)
get()
(in
SimplePDB_AtomCAP
)
get()
(in
InterRepeatContactFilterCreatorAP
)
get_PCS_data_line_all_spin()
(in
PCS_data_Ts1
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
InterRepeatContactFilterCreatorCAP
)
get_PCS_data_line_all_spin()
(in
PCS_data_Ts2
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
InterfaceBindingEnergyDensityFilterAP
)
get_PCS_data_line_all_spin()
(in
PCS_data_Ts3
)
get()
(in
SliceAP
)
get()
(in
InterfaceBindingEnergyDensityFilterCAP
)
get_PCS_data_line_all_spin()
(in
PCS_data_Ts4
)
get()
(in
SliceCAP
)
get()
(in
InterfaceBindingEnergyDensityFilterCreatorAP
)
get_pcs_data_per_lanthanides_all()
(in
PCS_data
)
get()
(in
SphereAP
)
get()
(in
InterfaceBindingEnergyDensityFilterCreatorCAP
)
get_pcs_data_per_lanthanides_all()
(in
PcsDataCenter
)
get()
(in
SphereCAP
)
get()
(in
InterfaceSasaFilterAP
)
get_pcs_data_per_lanthanides_all()
(in
PCS_data_Ts1
)
get()
(in
traceAP
)
get()
(in
InterfaceSasaFilterCAP
)
get_pcs_data_per_lanthanides_all()
(in
PCS_data_Ts2
)
get()
(in
traceCAP
)
get()
(in
InterfaceSasaFilterCreatorAP
)
get_pcs_data_per_lanthanides_all()
(in
PCS_data_Ts3
)
get()
(in
RG_Energy_RNAAP
)
get()
(in
InterfaceSasaFilterCreatorCAP
)
get_pcs_data_per_lanthanides_all()
(in
PCS_data_Ts4
)
get()
(in
RG_Energy_RNACAP
)
get()
(in
IntraRepeatContactFilterAP
)
get_PCS_experimental()
(in
PcsInputLine
)
get()
(in
RG_Energy_RNACreatorAP
)
get()
(in
IntraRepeatContactFilterCAP
)
get_PCS_tolerance()
(in
PcsInputLine
)
get()
(in
RG_Energy_RNACreatorCAP
)
get()
(in
IntraRepeatContactFilterCreatorAP
)
get_pcs_weight()
(in
PCS_Energy_parameters_manager
)
get()
(in
RNA_AtomVDWAP
)
get()
(in
IntraRepeatContactFilterCreatorCAP
)
get_pcs_weight()
(in
PcsEnergyParameter
)
get()
(in
RNA_AtomVDWCAP
)
get()
(in
JScoreEvaluatorAP
)
get_pcs_weight()
(in
PCS_Energy_parameters_manager_Ts1
)
get()
(in
RNA_BulgeEnergyAP
)
get()
(in
JScoreEvaluatorCAP
)
get_pcs_weight()
(in
PCS_Energy_parameters_manager_Ts2
)
get()
(in
RNA_BulgeEnergyCAP
)
get()
(in
JScoreEvaluatorCreatorAP
)
get_pcs_weight()
(in
PCS_Energy_parameters_manager_Ts3
)
get()
(in
RNA_BulgeEnergyCreatorAP
)
get()
(in
JScoreEvaluatorCreatorCAP
)
get_pcs_weight()
(in
PCS_Energy_parameters_manager_Ts4
)
get()
(in
RNA_BulgeEnergyCreatorCAP
)
get()
(in
JumpEvaluatorAP
)
get_PcsEnergyParameter_for()
(in
PcsEnergyParameterManager
)
get()
(in
RNA_CentroidInfoAP
)
get()
(in
JumpEvaluatorCAP
)
get_PcsInputCenter_for()
(in
PcsInputCenterManager
)
get()
(in
RNA_CentroidInfoCAP
)
get()
(in
JumpNrEvaluatorAP
)
get_PcsInputFile_all()
(in
PcsInputCenter
)
get()
(in
RNA_EnergyMethodOptionsAP
)
get()
(in
JumpNrEvaluatorCAP
)
get_PcsInputLine_all()
(in
PcsInputFile
)
get()
(in
RNA_EnergyMethodOptionsCAP
)
get()
(in
JumpNrEvaluatorCreatorAP
)
get_pdb_and_cleanup()
(in
rosetta.protocols.stepwise.setup._protocols_stepwise_setup_
)
get()
(in
RNA_FilteredBaseBaseInfoAP
)
get()
(in
JumpNrEvaluatorCreatorCAP
)
get_pdb_id()
(in
FragmentCandidate
)
get()
(in
RNA_FilteredBaseBaseInfoCAP
)
get()
(in
LeastNativeLike9merFilterAP
)
get_pdb_id()
(in
VallChunk
)
get()
(in
RNA_FullAtomStackingEnergyAP
)
get()
(in
LeastNativeLike9merFilterCAP
)
get_pdb_lines()
(in
PDBSilentStruct
)
get()
(in
RNA_FullAtomStackingEnergyCAP
)
get()
(in
LeastNativeLike9merFilterCreatorAP
)
get_pdb_numbering_from_single_string()
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
get()
(in
RNA_FullAtomStackingEnergyCreatorAP
)
get()
(in
LeastNativeLike9merFilterCreatorCAP
)
get_pdb_numbering_from_strings()
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
get()
(in
RNA_FullAtomStackingEnergyCreatorCAP
)
get()
(in
LoopRmsdEvaluatorAP
)
get_pdb_remark()
(in
ParametersSet
)
get()
(in
RNA_FullAtomVDW_BasePhosphateAP
)
get()
(in
LoopRmsdEvaluatorCAP
)
get_pdb_remark()
(in
BundleParameters
)
get()
(in
RNA_FullAtomVDW_BasePhosphateCAP
)
get()
(in
MotifScoreFilterAP
)
get_pdb_remark()
(in
BundleParametersSet
)
get()
(in
RNA_FullAtomVDW_BasePhosphateCreatorAP
)
get()
(in
MotifScoreFilterCAP
)
get_pdb_source()
(in
StrandFragment
)
get()
(in
RNA_FullAtomVDW_BasePhosphateCreatorCAP
)
get()
(in
MotifScoreFilterCreatorAP
)
get_pdb_with_full_model_info()
(in
rosetta.protocols.stepwise.setup._protocols_stepwise_setup_
)
get()
(in
RNA_JR_SuiteEnergyAP
)
get()
(in
MotifScoreFilterCreatorCAP
)
get_pddf()
(in
PDDFEnergy
)
get()
(in
RNA_JR_SuiteEnergyCAP
)
get()
(in
MultipleSigmoidsAP
)
get_pep_lengths()
(in
PeptideDeriverFilter
)
get()
(in
RNA_JR_SuiteEnergyCreatorAP
)
get()
(in
MultipleSigmoidsCAP
)
get_peptide()
(in
LoopHashMap
)
get()
(in
RNA_JR_SuiteEnergyCreatorCAP
)
get()
(in
MultipleSigmoidsFilterCreatorAP
)
get_peptide_bond_reference_frame()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
RNA_LJ_BaseEnergyAP
)
get()
(in
MultipleSigmoidsFilterCreatorCAP
)
get_peptide_bond_reference_frame_atomids()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
RNA_LJ_BaseEnergyCAP
)
get()
(in
MutationsFilterAP
)
get_peptide_chain()
(in
DisulfideInsertionMover
)
get()
(in
RNA_LJ_BaseEnergyCreatorAP
)
get()
(in
MutationsFilterCAP
)
get_peptoid_rotamer_library()
(in
RotamerLibrary
)
get()
(in
RNA_LJ_BaseEnergyCreatorCAP
)
get()
(in
MutationsFilterCreatorAP
)
get_peptoid_rotlib_n_bin_per_rot()
(in
ResidueType
)
get()
(in
RNA_LowResolutionPotentialAP
)
get()
(in
MutationsFilterCreatorCAP
)
get_peptoid_rotlib_path()
(in
ResidueType
)
get()
(in
RNA_LowResolutionPotentialCAP
)
get()
(in
NMerPSSMEnergyFilterAP
)
get_per_residue_energy()
(in
InterfaceAnalyzerMover
)
get()
(in
RNA_Mg_EnergyAP
)
get()
(in
NMerPSSMEnergyFilterCAP
)
get_per_residue_scores()
(in
rosetta.protocols.relax._protocols_relax_
)
get()
(in
RNA_Mg_EnergyCAP
)
get()
(in
NMerPSSMEnergyFilterCreatorAP
)
get_percentile_bounds()
(in
rosetta.numeric.kdtree._numeric_kdtree_
)
get()
(in
RNA_Mg_EnergyCreatorAP
)
get()
(in
NMerPSSMEnergyFilterCreatorCAP
)
get_period()
(in
Element
)
get()
(in
RNA_Mg_EnergyCreatorCAP
)
get()
(in
NMerSVMEnergyFilterAP
)
get_perturb_CCD_off()
(in
AnchoredPerturbMover
)
get()
(in
RNA_Mg_KnowledgeBasedPotentialAP
)
get()
(in
NMerSVMEnergyFilterCAP
)
get_perturb_cycles()
(in
AnchoredPerturbMover
)
get()
(in
RNA_Mg_KnowledgeBasedPotentialCAP
)
get()
(in
NMerSVMEnergyFilterCreatorAP
)
get_perturb_KIC_off()
(in
AnchoredPerturbMover
)
get()
(in
RNA_PairwiseLowResolutionEnergyAP
)
get()
(in
NMerSVMEnergyFilterCreatorCAP
)
get_perturb_show()
(in
AnchoredPerturbMover
)
get()
(in
RNA_PairwiseLowResolutionEnergyCAP
)
get()
(in
NativeEvaluatorCreatorAP
)
get_perturb_temp()
(in
AnchoredPerturbMover
)
get()
(in
RNA_PairwiseLowResolutionEnergyCreatorAP
)
get()
(in
NativeEvaluatorCreatorCAP
)
get_perturber_effect()
(in
GeneralizedKICperturber
)
get()
(in
RNA_PairwiseLowResolutionEnergyCreatorCAP
)
get()
(in
NeighborTypeFilterAP
)
get_perturber_effect_from_name()
(in
GeneralizedKICperturber
)
get()
(in
RNA_RawBaseBaseInfoAP
)
get()
(in
NeighborTypeFilterCAP
)
get_perturber_effect_name()
(in
GeneralizedKICperturber
)
get()
(in
RNA_RawBaseBaseInfoCAP
)
get()
(in
NeighborTypeFilterCreatorAP
)
get_perturber_names()
(in
PerturberSet
)
get()
(in
RNA_ScoringInfoAP
)
get()
(in
NeighborTypeFilterCreatorCAP
)
get_phi()
(in
RotData
)
get()
(in
RNA_ScoringInfoCAP
)
get()
(in
NetChargeFilterAP
)
get_phi()
(in
RigidBodyRandomizeMover
)
get()
(in
RNA_SugarCloseEnergyAP
)
get()
(in
NetChargeFilterCAP
)
get_phi_from_rsd()
(in
SingleResidueDunbrackLibrary
)
get()
(in
RNA_SugarCloseEnergyCAP
)
get()
(in
NetChargeFilterCreatorAP
)
get_phi_from_rsd()
(in
SingleResiduePeptoidLibrary
)
get()
(in
RNA_SugarCloseEnergyCreatorAP
)
get()
(in
NetChargeFilterCreatorCAP
)
get_phosphate_atom_and_neighbor_list()
(in
rosetta.protocols.stepwise.modeler.rna.phosphate._protocols_stepwise_modeler_rna_phosphate_
)
get()
(in
RNA_SugarCloseEnergyCreatorCAP
)
get()
(in
NonSequentialNeighborsFilterAP
)
get_phosphate_scorefxn()
(in
rosetta.protocols.stepwise.modeler.rna.phosphate._protocols_stepwise_modeler_rna_phosphate_
)
get()
(in
RNA_SuiteEnergyAP
)
get()
(in
NonSequentialNeighborsFilterCAP
)
get_pi_electron_contribution_type()
(in
GasteigerAtomTypeData
)
get()
(in
RNA_SuiteEnergyCAP
)
get()
(in
NonSequentialNeighborsFilterCreatorAP
)
get_pivot_picker()
(in
KicMover
)
get()
(in
RNA_SuiteEnergyCreatorAP
)
get()
(in
NonSequentialNeighborsFilterCreatorCAP
)
get_pivot_residues_from_movemap()
(in
rosetta.protocols.backrub._protocols_backrub_
)
get()
(in
RNA_SuiteEnergyCreatorCAP
)
get()
(in
OperatorAP
)
get_pleating()
(in
StrandPairing
)
get()
(in
RNA_SuitePotentialAP
)
get()
(in
OperatorCAP
)
get_pleating()
(in
rosetta.core.scoring.dssp._core_scoring_dssp_
)
get()
(in
RNA_SuitePotentialCAP
)
get()
(in
OperatorFilterCreatorAP
)
get_pleating()
(in
rosetta.protocols.jumping._protocols_jumping_
)
get()
(in
RNA_TorsionEnergyAP
)
get()
(in
OperatorFilterCreatorCAP
)
get_pocket_distance()
(in
PocketGrid
)
get()
(in
RNA_TorsionEnergyCAP
)
get()
(in
PDDFScoreFilterAP
)
get_PoissonBoltzmannPotential()
(in
ScoringManager
)
get()
(in
RNA_TorsionEnergyCreatorAP
)
get()
(in
PDDFScoreFilterCAP
)
get_polymer_residue_direction()
(in
FoldTree
)
get()
(in
RNA_TorsionEnergyCreatorCAP
)
get()
(in
PackStatFilterAP
)
get_polymer_type()
(in
MakeRotLibOptionsData
)
get()
(in
RNA_TorsionPotentialAP
)
get()
(in
PackStatFilterCAP
)
get_pool()
(in
QuotaCollector
)
get()
(in
RNA_TorsionPotentialCAP
)
get()
(in
PackStatFilterCreatorAP
)
get_pool_bins()
(in
ABEGO_SS_Config
)
get()
(in
RNA_VDW_EnergyAP
)
get()
(in
PackStatFilterCreatorCAP
)
get_pool_name()
(in
FragmentCandidate
)
get()
(in
RNA_VDW_EnergyCAP
)
get()
(in
PackerNeighborGraphFilterAP
)
get_pool_name()
(in
QuotaConfig
)
get()
(in
RNA_VDW_EnergyCreatorAP
)
get()
(in
PackerNeighborGraphFilterCAP
)
get_pool_name()
(in
QuotaPool
)
get()
(in
RNA_VDW_EnergyCreatorCAP
)
get()
(in
PalesEvaluatorAP
)
get_pose()
(in
PBLifetimeCache
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
PalesEvaluatorCAP
)
get_pose()
(in
ResPairMotif
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
PalesEvaluatorCreatorAP
)
get_pose()
(in
DbTrajectoryReader
)
get()
(in
StackElecEnergyAP
)
get()
(in
PalesEvaluatorCreatorCAP
)
get_pose()
(in
OTFFlexbbInteractionGraph
)
get()
(in
StackElecEnergyCAP
)
get()
(in
PoolEvaluatorCreatorAP
)
get_pose()
(in
VallChunk
)
get()
(in
StackElecEnergyCreatorAP
)
get()
(in
PoolEvaluatorCreatorCAP
)
get_pose()
(in
InputterStream
)
get()
(in
StackElecEnergyCreatorCAP
)
get()
(in
PoseCommentAP
)
get_pose()
(in
InnerJob
)
get()
(in
ChemicalShiftDataAP
)
get()
(in
PoseCommentCAP
)
get_pose()
(in
Job
)
get()
(in
ChemicalShiftDataCAP
)
get()
(in
PoseCommentFilterCreatorAP
)
get_pose()
(in
DbTrajectoryReader
)
get()
(in
RNA_CS_parametersAP
)
get()
(in
PoseCommentFilterCreatorCAP
)
get_pose()
(in
SilentStructStore
)
get()
(in
RNA_CS_parametersCAP
)
get()
(in
PoseInfoFilterAP
)
get_pose_build_resids()
(in
Matcher
)
get()
(in
RNA_CS_residue_parametersAP
)
get()
(in
PoseInfoFilterCAP
)
get_pose_cis_trans_conformation()
(in
rosetta.protocols.antibody.clusters._protocols_antibody_clusters_
)
get()
(in
RNA_CS_residue_parametersCAP
)
get()
(in
PoseInfoFilterCreatorAP
)
get_pose_data()
(in
EnzCstTemplateRes
)
get()
(in
RNA_ChemicalShiftEnergyAP
)
get()
(in
PoseInfoFilterCreatorCAP
)
get_pose_from_claimer()
(in
FoldandDockClaimer
)
get()
(in
RNA_ChemicalShiftEnergyCAP
)
get()
(in
PredictedBurialEvaluatorAP
)
get_pose_from_claimer()
(in
MembraneTopologyClaimer
)
get()
(in
RNA_ChemicalShiftEnergyCreatorAP
)
get()
(in
PredictedBurialEvaluatorCAP
)
get_pose_from_claimer()
(in
TopologyClaimer
)
get()
(in
RNA_ChemicalShiftEnergyCreatorCAP
)
get()
(in
PredictedBurialFnEvaluatorCreatorAP
)
get_pose_intensities()
(in
SAXSEnergy
)
get()
(in
RNA_ChemicalShiftPotentialAP
)
get()
(in
PredictedBurialFnEvaluatorCreatorCAP
)
get_pose_list()
(in
GatherPosesMover
)
get()
(in
RNA_ChemicalShiftPotentialCAP
)
get()
(in
QuatAP
)
get_pose_list()
(in
StepWiseConnectionSampler
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
QuatCAP
)
get_pose_list()
(in
StepWiseLegacyClusterer
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
RDC_EvaluatorAP
)
get_pose_list()
(in
StepWiseLegacyClustererSilentBased
)
get()
(in
RNA_ChemicalMappingEnergyAP
)
get()
(in
RDC_EvaluatorCAP
)
get_pose_pack_data()
(in
SimplePDB
)
get()
(in
RNA_ChemicalMappingEnergyCAP
)
get()
(in
RGFilterAP
)
get_pose_resnum()
(in
NonPlaidFingerprint
)
get()
(in
RNA_ChemicalMappingEnergyCreatorAP
)
get()
(in
RGFilterCAP
)
get_poses()
(in
DbTrajectoryReader
)
get()
(in
RNA_ChemicalMappingEnergyCreatorCAP
)
get()
(in
RangeFilterAP
)
get_poses()
(in
DbTrajectoryReader
)
get()
(in
RNA_DMS_LowResolutionPotentialAP
)
get()
(in
RangeFilterCAP
)
get_position()
(in
CutClaim
)
get()
(in
RNA_DMS_LowResolutionPotentialCAP
)
get()
(in
RangeFilterCreatorAP
)
get_positive_filters()
(in
BoltzmannFilter
)
get()
(in
RNA_DMS_PotentialAP
)
get()
(in
RangeFilterCreatorCAP
)
get_possible_O3prime_C5prime_distance_range()
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
get()
(in
RNA_DMS_PotentialCAP
)
get()
(in
RdcEvaluatorCreatorAP
)
get_possible_reference_res_list_from_pose_without_fold_tree()
(in
rosetta.protocols.stepwise.modeler.rna.sugar._protocols_stepwise_modeler_rna_sugar_
)
get()
(in
RNA_DataBackboneEnergyAP
)
get()
(in
RdcEvaluatorCreatorCAP
)
get_potential()
(in
PoissonBoltzmannPotential
)
get()
(in
RNA_DataBackboneEnergyCAP
)
get()
(in
RdcSelectEvaluatorCreatorAP
)
get_potential()
(in
CarbonHBondPotential
)
get()
(in
RNA_DataBackboneEnergyCreatorAP
)
get()
(in
RdcSelectEvaluatorCreatorCAP
)
get_potential_RNA()
(in
CarbonHBondPotential
)
get()
(in
RNA_DataBackboneEnergyCreatorCAP
)
get()
(in
RdcTargetEvaluatorCreatorAP
)
get_potentials()
(in
DDPlookup
)
get()
(in
RNA_DataInfoAP
)
get()
(in
RdcTargetEvaluatorCreatorCAP
)
get_potentials()
(in
NVlookup
)
get()
(in
RNA_DataInfoCAP
)
get()
(in
RegionalConnectionsAP
)
get_pr_idx()
(in
MultiProbePerSphereAccumulator
)
get()
(in
RNA_DatumAP
)
get()
(in
RegionalConnectionsCAP
)
get_pr_idx()
(in
MultiProbePoseAccumulator
)
get()
(in
RNA_DatumCAP
)
get()
(in
RelativePoseFilterAP
)
get_pre_ligand_atom_id()
(in
MetalSiteResidue
)
get()
(in
RNA_ReactivityAP
)
get()
(in
RelativePoseFilterCAP
)
get_pre_pre_ligand_atom_id()
(in
MetalSiteResidue
)
get()
(in
RNA_ReactivityCAP
)
get()
(in
RelativePoseFilterCreatorAP
)
get_prediction_name()
(in
PartialSecondarySimilarity
)
get()
(in
LeGrandSasaAP
)
get()
(in
RelativePoseFilterCreatorCAP
)
get_prediction_name()
(in
RamaScore
)
get()
(in
LeGrandSasaCAP
)
get()
(in
RepeatParameterFilterAP
)
get_prediction_name()
(in
SecondaryIdentity
)
get()
(in
SasaCalcAP
)
get()
(in
RepeatParameterFilterCAP
)
get_prediction_name()
(in
SecondarySimilarity
)
get()
(in
SasaCalcCAP
)
get()
(in
RepeatParameterFilterCreatorAP
)
get_prediction_name()
(in
TalosSSSimilarity
)
get()
(in
SasaMethodAP
)
get()
(in
RepeatParameterFilterCreatorCAP
)
get_preferred_jump_pair_for_docking_domains()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
get()
(in
SasaMethodCAP
)
get()
(in
ReportFilterAP
)
get_pretend_phi_explicit()
(in
rosetta.protocols.stepwise.legacy.modeler.protein._protocols_stepwise_legacy_modeler_protein_
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
ReportFilterCAP
)
get_pretend_psi_explicit()
(in
rosetta.protocols.stepwise.legacy.modeler.protein._protocols_stepwise_legacy_modeler_protein_
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
ReportFilterCreatorAP
)
get_principal_quantum_number()
(in
ElectronConfiguration
)
get()
(in
DistanceHistogram
)
get()
(in
ReportFilterCreatorCAP
)
get_priority()
(in
FragmentScoringMethod
)
get()
(in
DistanceHistogramAP
)
get()
(in
ResidueBurialFilterAP
)
get_prob()
(in
rosetta.protocols.ss_prediction._protocols_ss_prediction_
)
get()
(in
DistanceHistogramCAP
)
get()
(in
ResidueBurialFilterCAP
)
get_probability()
(in
RotData
)
get()
(in
FastSAXSEnergyAP
)
get()
(in
ResidueBurialFilterCreatorAP
)
get_probability_for_rotamer()
(in
SingleResidueDunbrackLibrary
)
get()
(in
FastSAXSEnergyCAP
)
get()
(in
ResidueBurialFilterCreatorCAP
)
get_probability_for_rotamer()
(in
SingleResiduePeptoidLibrary
)
get()
(in
FastSAXSEnergyCreatorAP
)
get()
(in
ResidueCountFilterAP
)
get_probe_scorefxn()
(in
RNA_DMS_Potential
)
get()
(in
FastSAXSEnergyCreatorCAP
)
get()
(in
ResidueCountFilterCAP
)
get_probe_xyz()
(in
RNA_DMS_Potential
)
get()
(in
FormFactor
)
get()
(in
ResidueCountFilterCreatorAP
)
get_profile()
(in
VallChunk
)
get()
(in
FormFactorAP
)
get()
(in
ResidueCountFilterCreatorCAP
)
get_profile_wgt()
(in
SequenceProfileMover
)
get()
(in
FormFactorCAP
)
get()
(in
ResidueDistanceFilterAP
)
get_proline_correction_for_node()
(in
OnTheFlyEdge
)
get()
(in
FormFactorManagerAP
)
get()
(in
ResidueDistanceFilterCAP
)
get_proline_correction_for_node()
(in
SymmOnTheFlyEdge
)
get()
(in
FormFactorManagerCAP
)
get()
(in
ResidueDistanceFilterCreatorAP
)
get_property()
(in
Element
)
get()
(in
SAXSEnergyAP
)
get()
(in
ResidueDistanceFilterCreatorCAP
)
get_property_effect_name()
(in
BinTransitionData
)
get()
(in
SAXSEnergyCAP
)
get()
(in
ResidueIEFilterAP
)
get_property_from_name()
(in
BinTransitionData
)
get()
(in
SAXSEnergyCENAP
)
get()
(in
ResidueIEFilterCAP
)
get_property_name()
(in
Element
)
get()
(in
SAXSEnergyCENCAP
)
get()
(in
ResidueIEFilterCreatorAP
)
get_proposed_energy()
(in
SimpleEdge
)
get()
(in
SAXSEnergyCreatorAP
)
get()
(in
ResidueIEFilterCreatorCAP
)
get_ProQPotential()
(in
ScoringManager
)
get()
(in
SAXSEnergyCreatorCAP
)
get()
(in
ResidueSetChainEnergyFilterAP
)
get_protein()
(in
BackboneDB
)
get()
(in
SAXSEnergyCreatorCENAP
)
get()
(in
ResidueSetChainEnergyFilterCAP
)
get_protein_sstype()
(in
AbinitioBaseFilter
)
get()
(in
SAXSEnergyCreatorCENCAP
)
get()
(in
ResidueSetChainEnergyFilterCreatorAP
)
get_protocol_and_batch_id()
(in
rosetta.protocols.features._protocols_features_
)
get()
(in
SAXSEnergyCreatorFAAP
)
get()
(in
ResidueSetChainEnergyFilterCreatorCAP
)
get_protocol_id()
(in
ProteinSilentReport
)
get()
(in
SAXSEnergyCreatorFACAP
)
get()
(in
ResiduesInInterfaceFilterAP
)
get_pseudobonds_to_residue()
(in
Residue
)
get()
(in
SAXSEnergyFAAP
)
get()
(in
ResiduesInInterfaceFilterCAP
)
get_psi()
(in
RotData
)
get()
(in
SAXSEnergyFACAP
)
get()
(in
ResiduesInInterfaceFilterCreatorAP
)
get_psi()
(in
RigidBodyRandomizeMover
)
get()
(in
SinXOverXAP
)
get()
(in
ResiduesInInterfaceFilterCreatorCAP
)
get_psi_from_rsd()
(in
SingleResidueDunbrackLibrary
)
get()
(in
SinXOverXCAP
)
get()
(in
RmsdEvaluatorAP
)
get_psi_from_rsd()
(in
SingleResiduePeptoidLibrary
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
RmsdEvaluatorCAP
)
get_ptr()
(in
DataCache_T_basic_datacache_CacheableData_T
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
RmsdEvaluatorCreatorAP
)
get_pymol_chain()
(in
rosetta.basic._basic_
)
get()
(in
SingletonBase_T_core_scoring_saxs_SinXOverX_TAP
)
get()
(in
RmsdEvaluatorCreatorCAP
)
get_pymol_chain_index_1()
(in
rosetta.basic._basic_
)
get()
(in
SingletonBase_T_core_scoring_saxs_SinXOverX_TCAP
)
get()
(in
RmsdTargetEvaluatorCreatorAP
)
get_pymol_num_unique_ids()
(in
rosetta.basic._basic_
)
get()
(in
AtomAP
)
get()
(in
RmsdTargetEvaluatorCreatorCAP
)
get_pymol_sel_hbond_unsat()
(in
InterfaceAnalyzerMover
)
get()
(in
AtomCAP
)
get()
(in
RotamerBoltzmannWeightAP
)
get_pymol_sel_interface()
(in
InterfaceAnalyzerMover
)
get()
(in
MolecularSurfaceCalculatorAP
)
get()
(in
RotamerBoltzmannWeightCAP
)
get_pymol_sel_packing()
(in
InterfaceAnalyzerMover
)
get()
(in
MolecularSurfaceCalculatorCAP
)
get()
(in
RotamerBoltzmannWeightFilterCreatorAP
)
get_python_string()
(in
Interface
)
get()
(in
ShapeComplementarityCalculatorAP
)
get()
(in
RotamerBoltzmannWeightFilterCreatorCAP
)
get_q()
(in
SAXSEnergy
)
get()
(in
ShapeComplementarityCalculatorCAP
)
get()
(in
SAXSScoreFilterAP
)
get_qt_mapping()
(in
ExtraThreadingMover
)
get()
(in
ShapeComplementarityCalculatorExceptionAP
)
get()
(in
SAXSScoreFilterCAP
)
get_qt_mapping()
(in
ThreadingMover
)
get()
(in
ShapeComplementarityCalculatorExceptionCAP
)
get()
(in
SSMotifFinderAP
)
get_query_middle_res_id()
(in
FragmentCandidate
)
get()
(in
_ATOM_RADIUSAP
)
get()
(in
SSMotifFinderCAP
)
get_query_phi_prediction()
(in
FragmentPicker
)
get()
(in
_ATOM_RADIUSCAP
)
get()
(in
SSMotifFinderFilterCreatorAP
)
get_query_phi_prediction_conf()
(in
FragmentPicker
)
get()
(in
_DOTAP
)
get()
(in
SSMotifFinderFilterCreatorCAP
)
get_query_pos_i()
(in
NonlocalPair
)
get()
(in
_DOTCAP
)
get()
(in
SavePoseConstraintToFileFilterAP
)
get_query_pos_j()
(in
NonlocalPair
)
get()
(in
_PROBEAP
)
get()
(in
SavePoseConstraintToFileFilterCAP
)
get_query_psi_prediction()
(in
FragmentPicker
)
get()
(in
_PROBECAP
)
get()
(in
SavePoseConstraintToFileFilterCreatorAP
)
get_query_psi_prediction_conf()
(in
FragmentPicker
)
get()
(in
_RESULTSAP
)
get()
(in
SavePoseConstraintToFileFilterCreatorCAP
)
get_query_residue_depth()
(in
FragmentPicker
)
get()
(in
_RESULTSCAP
)
get()
(in
SaveResfileToDiskFilterAP
)
get_query_sa_prediction()
(in
FragmentPicker
)
get()
(in
SurfaceEnergiesAP
)
get()
(in
SaveResfileToDiskFilterCAP
)
get_query_seq()
(in
FragmentPicker
)
get()
(in
SurfaceEnergiesCAP
)
get()
(in
SaveResfileToDiskFilterCreatorAP
)
get_query_seq_string()
(in
FragmentPicker
)
get()
(in
symECreatorAP
)
get()
(in
SaveResfileToDiskFilterCreatorCAP
)
get_query_size()
(in
AtomBasedConstraintsScore
)
get()
(in
symECreatorCAP
)
get()
(in
ScoreCutoffFilterAP
)
get_query_ss()
(in
FragmentPicker
)
get()
(in
symEnergyAP
)
get()
(in
ScoreCutoffFilterCAP
)
get_query_ss_string()
(in
FragmentPicker
)
get()
(in
symEnergyCAP
)
get()
(in
ScoreCutoffFilterCreatorAP
)
get_question_mark_string()
(in
rosetta.protocols.features._protocols_features_
)
get()
(in
SymmetricEnergiesAP
)
get()
(in
ScoreCutoffFilterCreatorCAP
)
get_quota_score()
(in
FragmentScoreMap
)
get()
(in
SymmetricEnergiesCAP
)
get()
(in
ScoreEvaluatorAP
)
get_R()
(in
ElectronDensity
)
get()
(in
SymmetricScoreFunctionAP
)
get()
(in
ScoreEvaluatorCAP
)
get_radial_disp_diffs()
(in
SymDofMoverSampler
)
get()
(in
SymmetricScoreFunctionCAP
)
get()
(in
ScoreTypeFilterAP
)
get_radial_disps()
(in
SymDofMoverSampler
)
get()
(in
CPDataCorrespondenceAP
)
get()
(in
ScoreTypeFilterCAP
)
get_radii()
(in
RotamerDots
)
get()
(in
CPDataCorrespondenceCAP
)
get()
(in
ScoreTypeFilterCreatorAP
)
get_radius()
(in
AtomRadiusMap
)
get()
(in
RotamerTrieBaseAP
)
get()
(in
ScoreTypeFilterCreatorCAP
)
get_Rama2BOffset()
(in
ScoringManager
)
get()
(in
RotamerTrieBaseCAP
)
get()
(in
SelectGdtEvaluatorAP
)
get_rama_check()
(in
KinematicMover
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
SelectGdtEvaluatorCAP
)
get_Ramachandran()
(in
ScoringManager
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
SelectMaxsubEvaluatorAP
)
get_Ramachandran2B()
(in
ScoringManager
)
get()
(in
TrieCollectionAP
)
get()
(in
SelectMaxsubEvaluatorCAP
)
get_Ramachandran2B_ptr()
(in
ScoringManager
)
get()
(in
TrieCollectionCAP
)
get()
(in
SelectRDC_EvaluatorAP
)
get_Ramachandran_ptr()
(in
ScoringManager
)
get()
(in
TrieCountPairBaseAP
)
get()
(in
SelectRDC_EvaluatorCAP
)
get_ramp_fa_rep()
(in
ShakeStructureMover
)
get()
(in
TrieCountPairBaseCAP
)
get()
(in
SelectRmsdEvaluatorAP
)
get_random_base_pair_jump()
(in
RNA_JumpLibrary
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
SelectRmsdEvaluatorCAP
)
get_random_beta_sheet_jump()
(in
PairingLibrary
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
ShapeComplementarityFilterAP
)
get_random_conformer()
(in
RingConformerSet
)
get()
(in
VDWTrieCountPair1BAP
)
get()
(in
ShapeComplementarityFilterCAP
)
get_random_local_min_conformer()
(in
RingConformerSet
)
get()
(in
VDWTrieCountPair1BCAP
)
get()
(in
ShapeComplementarityFilterCreatorAP
)
get_random_neighbor()
(in
FASTERNode
)
get()
(in
VDW_EnergyCreatorAP
)
get()
(in
ShapeComplementarityFilterCreatorCAP
)
get_random_neighbor_for_node()
(in
FASTERInteractionGraph
)
get()
(in
VDW_EnergyCreatorCAP
)
get()
(in
SheetFilterAP
)
get_random_order()
(in
IndependentLoopMover
)
get()
(in
ABEGOAP
)
get()
(in
SheetFilterCAP
)
get_random_point_on_ellipsoid()
(in
EllipsoidalRandomizationMover
)
get()
(in
ABEGOCAP
)
get()
(in
SidechainRmsdFilterAP
)
get_random_tmh_jump()
(in
PairingLibrary
)
get()
(in
ABEGOManagerAP
)
get()
(in
SidechainRmsdFilterCAP
)
get_randomize_input_sequence()
(in
AnchoredDesignMover
)
get()
(in
ABEGOManagerCAP
)
get()
(in
SidechainRmsdFilterCreatorAP
)
get_randomize_resnum()
(in
BoltzmannRotamerMover
)
get()
(in
AlignerAP
)
get()
(in
SidechainRmsdFilterCreatorCAP
)
get_randomize_resnum()
(in
CoupledMover
)
get()
(in
AlignerCAP
)
get()
(in
SigmoidAP
)
get_randomize_resnum()
(in
ShortBackrubMover
)
get()
(in
AlignerFactoryAP
)
get()
(in
SigmoidCAP
)
get_raw_const_ptr()
(in
DataCache_T_basic_datacache_CacheableData_T
)
get()
(in
AlignerFactoryCAP
)
get()
(in
SigmoidFilterCreatorAP
)
get_raw_ptr()
(in
DataCache_T_basic_datacache_CacheableData_T
)
get()
(in
AnnotatedSequenceAP
)
get()
(in
SigmoidFilterCreatorCAP
)
get_rb_atr_and_rep_scores()
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
get()
(in
AnnotatedSequenceCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_rb_center()
(in
Jump
)
get()
(in
CellAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_rb_delta()
(in
Jump
)
get()
(in
CellCAP
)
get()
(in
StemFinderAP
)
get_rb_number()
(in
rosetta.core.id._core_id_
)
get()
(in
ChemicalShiftScoringSchemeAP
)
get()
(in
StemFinderCAP
)
get_rb_type()
(in
rosetta.core.id._core_id_
)
get()
(in
ChemicalShiftScoringSchemeCAP
)
get()
(in
StemFinderFilterCreatorAP
)
get_RDC_data()
(in
ResidualDipolarCoupling
)
get()
(in
ChemicalShiftSequenceAP
)
get()
(in
StemFinderFilterCreatorCAP
)
get_RDC_data()
(in
ResidualDipolarCoupling_Rohl
)
get()
(in
ChemicalShiftSequenceCAP
)
get()
(in
StructuralSimilarityEvaluatorAP
)
get_RDC_data_type()
(in
RDC
)
get()
(in
ChemicalShiftSequenceCreatorAP
)
get()
(in
StructuralSimilarityEvaluatorCAP
)
get_RDC_data_type()
(in
ResidualDipolarCoupling_Rohl
)
get()
(in
ChemicalShiftSequenceCreatorCAP
)
get()
(in
StructureSimilarityEvaluatorCreatorAP
)
get_rdf_function()
(in
RDFFunctionFactory
)
get()
(in
CompassScoringSchemeAP
)
get()
(in
StructureSimilarityEvaluatorCreatorCAP
)
get_real()
(in
rosetta.utility.json_spirit._utility_json_spirit_
)
get()
(in
CompassScoringSchemeCAP
)
get()
(in
SymmetricMotifFilterAP
)
get_real_option()
(in
rosetta.basic._basic_
)
get()
(in
CompositeScoringSchemeAP
)
get()
(in
SymmetricMotifFilterCAP
)
get_real_option()
(in
rosetta.basic.options._basic_options_
)
get()
(in
CompositeScoringSchemeCAP
)
get()
(in
SymmetricMotifFilterCreatorAP
)
get_real_vector_option()
(in
rosetta.basic.options._basic_options_
)
get()
(in
CompositeSequenceAP
)
get()
(in
SymmetricMotifFilterCreatorCAP
)
get_recent_history_size()
(in
LinearMemNode
)
get()
(in
CompositeSequenceCAP
)
get()
(in
SymmetricRmsdEvaluatorAP
)
get_recent_history_size()
(in
LinearMemoryInteractionGraph
)
get()
(in
CompositeSequenceCreatorAP
)
get()
(in
SymmetricRmsdEvaluatorCAP
)
get_recent_history_size()
(in
SymmLinearMemNode
)
get()
(in
CompositeSequenceCreatorCAP
)
get()
(in
TaskAwareSASAFilterAP
)
get_recent_history_size()
(in
SymmLinearMemoryInteractionGraph
)
get()
(in
DPScoringSchemeAP
)
get()
(in
TaskAwareSASAFilterCAP
)
get_recenter()
(in
SymmData
)
get()
(in
DPScoringSchemeCAP
)
get()
(in
TaskAwareSASAFilterCreatorAP
)
get_recovery_threshold()
(in
RRComparerAutomorphicRMSD
)
get()
(in
DP_MatrixAP
)
get()
(in
TaskAwareSASAFilterCreatorCAP
)
get_recovery_threshold()
(in
RRComparerElecDensDiff
)
get()
(in
DP_MatrixCAP
)
get()
(in
TaskAwareScoreTypeFilterAP
)
get_redesign_loop()
(in
LoopMover_Refine_Backrub
)
get()
(in
DerivedSequenceMappingAP
)
get()
(in
TaskAwareScoreTypeFilterCAP
)
get_redesign_loop()
(in
LoopMover_Refine_CCD
)
get()
(in
DerivedSequenceMappingCAP
)
get()
(in
TaskAwareScoreTypeFilterCreatorAP
)
get_redesign_loop()
(in
LoopMover_Refine_KIC
)
get()
(in
L1ScoringSchemeAP
)
get()
(in
TaskAwareScoreTypeFilterCreatorCAP
)
get_ref_tags()
(in
AtomTreeDiff
)
get()
(in
L1ScoringSchemeCAP
)
get()
(in
TerminusDistanceFilterAP
)
get_reference_atoms()
(in
rosetta.core.pose.carbohydrates._core_pose_carbohydrates_
)
get()
(in
LineAP
)
get()
(in
TerminusDistanceFilterCAP
)
get_reference_atoms_for_1st_omega()
(in
rosetta.core.pose.carbohydrates._core_pose_carbohydrates_
)
get()
(in
LineCAP
)
get()
(in
TerminusDistanceFilterCreatorAP
)
get_reference_atoms_for_phi()
(in
rosetta.core.pose.carbohydrates._core_pose_carbohydrates_
)
get()
(in
MCAlignerAP
)
get()
(in
TerminusDistanceFilterCreatorCAP
)
get_reference_atoms_for_psi()
(in
rosetta.core.pose.carbohydrates._core_pose_carbohydrates_
)
get()
(in
MCAlignerCAP
)
get()
(in
TotalSasaFilterAP
)
get_reference_energies_from_dofs()
(in
OptEMultifunc
)
get()
(in
MatrixScoringSchemeAP
)
get()
(in
TotalSasaFilterCAP
)
get_reference_energy()
(in
SingleLigandRotamerLibrary
)
get()
(in
MatrixScoringSchemeCAP
)
get()
(in
TotalSasaFilterCreatorAP
)
get_reference_intensities()
(in
SAXSEnergy
)
get()
(in
NWAlignerAP
)
get()
(in
TotalSasaFilterCreatorCAP
)
get_reference_pose()
(in
InterfaceRecapitulationMover
)
get()
(in
NWAlignerCAP
)
get()
(in
TruncatedScoreEvaluatorAP
)
get_reference_res_for_each_virtual_sugar_based_on_fold_tree()
(in
rosetta.protocols.stepwise.modeler.rna.sugar._protocols_stepwise_modeler_rna_sugar_
)
get()
(in
PairScoringSchemeAP
)
get()
(in
TruncatedScoreEvaluatorCAP
)
get_reference_res_for_each_virtual_sugar_without_fold_tree()
(in
rosetta.protocols.stepwise.modeler.rna.sugar._protocols_stepwise_modeler_rna_sugar_
)
get()
(in
PairScoringSchemeCAP
)
get()
(in
AddCavitiesMoverAP
)
get_reference_res_for_virtual_sugar_based_on_fold_tree()
(in
rosetta.protocols.stepwise.modeler.rna.sugar._protocols_stepwise_modeler_rna_sugar_
)
get()
(in
ProfSimScoringSchemeAP
)
get()
(in
AddCavitiesMoverCAP
)
get_reference_shift()
(in
RNA_ChemicalShiftPotential
)
get()
(in
ProfSimScoringSchemeCAP
)
get()
(in
AddChainMoverAP
)
get_refine_CCD_off()
(in
AnchoredRefineMover
)
get()
(in
SWAlignerAP
)
get()
(in
AddChainMoverCAP
)
get_refine_cycles()
(in
AnchoredRefineMover
)
get()
(in
SWAlignerCAP
)
get()
(in
AddChainMoverCreatorAP
)
get_refine_KIC_off()
(in
AnchoredRefineMover
)
get()
(in
ScoringSchemeAP
)
get()
(in
AddChainMoverCreatorCAP
)
get_refine_only()
(in
AnchoredDesignMover
)
get()
(in
ScoringSchemeCAP
)
get()
(in
AddConstraintsToCurrentConformationMoverAP
)
get_refine_repack_cycles()
(in
AnchoredRefineMover
)
get()
(in
ScoringSchemeFactoryAP
)
get()
(in
AddConstraintsToCurrentConformationMoverCAP
)
get_refine_temp()
(in
AnchoredRefineMover
)
get()
(in
ScoringSchemeFactoryCAP
)
get()
(in
AddConstraintsToCurrentConformationMoverCreatorAP
)
get_region_of_residue()
(in
AntibodyInfo
)
get()
(in
SequenceAP
)
get()
(in
AddConstraintsToCurrentConformationMoverCreatorCAP
)
get_register()
(in
Pairing
)
get()
(in
SequenceAlignmentAP
)
get()
(in
AddJobPairDataAP
)
get_register()
(in
StrandPairing
)
get()
(in
SequenceAlignmentCAP
)
get()
(in
AddJobPairDataCAP
)
get_rel_hphobic_sasa_by_charge()
(in
SasaCalc
)
get()
(in
SequenceAlignmentHasherAP
)
get()
(in
AddJobPairDataCreatorAP
)
get_relaxed_state()
(in
FASTERNode
)
get()
(in
SequenceAlignmentHasherCAP
)
get()
(in
AddJobPairDataCreatorCAP
)
get_relevant_residues()
(in
ReportToDB
)
get()
(in
SequenceCAP
)
get()
(in
AlignChainMoverAP
)
get_relevant_residues_mode()
(in
FeaturesReporter
)
get()
(in
SequenceCouplingAP
)
get()
(in
AlignChainMoverCAP
)
get_relevant_residues_mode()
(in
ReportToDB
)
get()
(in
SequenceCouplingCAP
)
get()
(in
AlignChainMoverCreatorAP
)
get_relevant_residues_task_factory()
(in
ReportToDB
)
get()
(in
SequenceCouplingCreatorAP
)
get()
(in
AlignChainMoverCreatorCAP
)
get_remodel_res()
(in
ResampleMover
)
get()
(in
SequenceCouplingCreatorCAP
)
get()
(in
BBConRotMoverAP
)
get_repack_period()
(in
RepackingRefiner
)
get()
(in
SequenceCreatorAP
)
get()
(in
BBConRotMoverCAP
)
get_repacked_poses()
(in
SetReturningPackRotamersMover
)
get()
(in
SequenceCreatorCAP
)
get()
(in
BBG8T3AMoverAP
)
get_report_format()
(in
PeptideDeriverFilter
)
get()
(in
SequenceFactoryAP
)
get()
(in
BBG8T3AMoverCAP
)
get_res_centers()
(in
SimplePDB
)
get()
(in
SequenceFactoryCAP
)
get()
(in
BBGaussianMoverAP
)
get_res_energy()
(in
ReportSequenceDifferences
)
get()
(in
SequenceProfileAP
)
get()
(in
BBGaussianMoverCAP
)
get_res_high()
(in
FiberDiffractionOptions
)
get()
(in
SequenceProfileCAP
)
get()
(in
BBGaussianMoverCreatorAP
)
get_res_list()
(in
FullModelParameters
)
get()
(in
SequenceProfileCreatorAP
)
get()
(in
BBGaussianMoverCreatorCAP
)
get_res_list_as_pairs()
(in
FullModelParameters
)
get()
(in
SequenceProfileCreatorCAP
)
get()
(in
BackboneMoverAP
)
get_res_list_const()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
get()
(in
SimpleScoringSchemeAP
)
get()
(in
BackboneMoverCAP
)
get_res_list_from_full_model_info()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
get()
(in
SimpleScoringSchemeCAP
)
get()
(in
BoltzmannRotamerMoverAP
)
get_res_list_from_full_model_info_const()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
get()
(in
SimpleSequenceCreatorAP
)
get()
(in
BoltzmannRotamerMoverCAP
)
get_res_low()
(in
FiberDiffractionOptions
)
get()
(in
SimpleSequenceCreatorCAP
)
get()
(in
BoltzmannRotamerMoverCreatorAP
)
get_res_num_from_pdb_info()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
get()
(in
SingletonBase_T_core_sequence_SequenceFactory_TAP
)
get()
(in
BoltzmannRotamerMoverCreatorCAP
)
get_res_res_elecE()
(in
GenBornPotential
)
get()
(in
SingletonBase_T_core_sequence_SequenceFactory_TCAP
)
get()
(in
ChainGroupDiscriminatorAP
)
get_res_res_overlap()
(in
RotamerDots
)
get()
(in
ChainbreakUtilAP
)
get()
(in
ChainGroupDiscriminatorCAP
)
get_res_res_score()
(in
AddGood2BPairEnergyRotamers
)
get()
(in
ChainbreakUtilCAP
)
get()
(in
ChainSplitMoverAP
)
get_resample_internal_local_move_elements()
(in
StepWiseMoveSelector
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
ChainSplitMoverCAP
)
get_resample_internal_move_elements()
(in
StepWiseMoveSelector
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
ChangeAndResetFoldTreeMoverAP
)
get_resample_move_elements()
(in
StepWiseMoveSelector
)
get()
(in
AgglomerativeHierarchicalClustererAP
)
get()
(in
ChangeAndResetFoldTreeMoverCAP
)
get_resample_terminal_move_elements()
(in
StepWiseMoveSelector
)
get()
(in
AgglomerativeHierarchicalClustererCAP
)
get()
(in
ChangeAndResetFoldTreeMoverCreatorAP
)
get_resfile()
(in
MotifHits
)
get()
(in
AverageLinkClustererAP
)
get()
(in
ChangeAndResetFoldTreeMoverCreatorCAP
)
get_resfile_1()
(in
AnchorMoversData
)
get()
(in
AverageLinkClustererCAP
)
get()
(in
ClassicFragmentMoverAP
)
get_resfile_2()
(in
AnchorMoversData
)
get()
(in
CalculatorAP
)
get()
(in
ClassicFragmentMoverCAP
)
get_resid()
(in
CompoundFilter
)
get()
(in
CalculatorCAP
)
get()
(in
ClearConstraintsMoverAP
)
get_resid()
(in
ResId
)
get()
(in
ClusterOptionsAP
)
get()
(in
ClearConstraintsMoverCAP
)
get_resid()
(in
ParsedProtocol
)
get()
(in
ClusterOptionsCAP
)
get()
(in
ClearConstraintsMoverCreatorAP
)
get_resid()
(in
AtomicContactFilter
)
get()
(in
ClusteringTreeNodeAP
)
get()
(in
ClearConstraintsMoverCreatorCAP
)
get_residue()
(in
FragData
)
get()
(in
ClusteringTreeNodeCAP
)
get()
(in
CombinePoseMoverAP
)
get_residue()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
get()
(in
CompleteLinkClustererAP
)
get()
(in
CombinePoseMoverCAP
)
get_residue()
(in
FragmentCandidate
)
get()
(in
CompleteLinkClustererCAP
)
get()
(in
ConsensusDesignMoverAP
)
get_residue()
(in
RigidBodyStepWiseSamplerWithResidueAlternatives
)
get()
(in
EulerAngles_RealAP
)
get()
(in
ConsensusDesignMoverCAP
)
get_residue_at_origin()
(in
ResidueAlternativeStepWiseSampler
)
get()
(in
EulerAngles_RealCAP
)
get()
(in
ConsensusDesignMoverCreatorAP
)
get_residue_at_origin()
(in
ResidueAlternativeStepWiseSamplerComb
)
get()
(in
EulerAngles_doubleAP
)
get()
(in
ConsensusDesignMoverCreatorCAP
)
get_residue_at_origin()
(in
ResidueListStepWiseSampler
)
get()
(in
EulerAngles_doubleCAP
)
get()
(in
ConstrainToIdealMoverAP
)
get_residue_at_origin()
(in
RigidBodyStepWiseSampler
)
get()
(in
EulerAngles_floatAP
)
get()
(in
ConstrainToIdealMoverCAP
)
get_residue_at_origin()
(in
RigidBodyStepWiseSamplerWithResidueAlternatives
)
get()
(in
EulerAngles_floatCAP
)
get()
(in
ConstraintSetMoverAP
)
get_residue_at_origin()
(in
RigidBodyStepWiseSamplerWithResidueList
)
get()
(in
HomogeneousTransform_DoubleAP
)
get()
(in
ConstraintSetMoverCAP
)
get_residue_at_origin_with_matching_type()
(in
ResidueAlternativeStepWiseSampler
)
get()
(in
HomogeneousTransform_DoubleCAP
)
get()
(in
ConstraintSetMoverCreatorAP
)
get_residue_at_origin_with_matching_type()
(in
ResidueAlternativeStepWiseSamplerComb
)
get()
(in
HomogeneousTransform_T_double_TAP
)
get()
(in
ConstraintSetMoverCreatorCAP
)
get_residue_base_state()
(in
rosetta.core.chemical.rna._core_chemical_rna_
)
get()
(in
HomogeneousTransform_T_double_TCAP
)
get()
(in
ContingentAcceptMoverAP
)
get_residue_base_state()
(in
rosetta.core.pose.rna._core_pose_rna_
)
get()
(in
IOTraits_T_double_TAP
)
get()
(in
ContingentAcceptMoverCAP
)
get_residue_edge()
(in
FoldTree
)
get()
(in
IOTraits_T_double_TCAP
)
get()
(in
ContingentAcceptMoverCreatorAP
)
get_residue_energy_by_svm()
(in
NMerSVMEnergy
)
get()
(in
IOTraits_T_float_TAP
)
get()
(in
ContingentAcceptMoverCreatorCAP
)
get_residue_feature()
(in
ResidueFeatureFactory
)
get()
(in
IOTraits_T_float_TCAP
)
get()
(in
CopyDofMoverAP
)
get_residue_from_seq_num()
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
get()
(in
IOTraits_T_int_TAP
)
get()
(in
CopyDofMoverCAP
)
get_residue_group_begin()
(in
RotamerSet
)
get()
(in
IOTraits_T_int_TCAP
)
get()
(in
CoupledMoverAP
)
get_residue_group_begin()
(in
RotamerSet_
)
get()
(in
IOTraits_T_long_double_TAP
)
get()
(in
CoupledMoverCAP
)
get_residue_group_begin()
(in
RotamerSubset
)
get()
(in
IOTraits_T_long_double_TCAP
)
get()
(in
CoupledMoverCreatorAP
)
get_residue_group_begin()
(in
SymmetricRotamerSet_
)
get()
(in
IOTraits_T_long_int_TAP
)
get()
(in
CoupledMoverCreatorCAP
)
get_residue_group_begin()
(in
FlexbbRotamerSet
)
get()
(in
IOTraits_T_long_int_TCAP
)
get()
(in
CutChainMoverAP
)
get_residue_group_index_for_rotamer()
(in
RotamerSet
)
get()
(in
IOTraits_T_long_unsigned_int_TAP
)
get()
(in
CutChainMoverCAP
)
get_residue_group_index_for_rotamer()
(in
RotamerSet_
)
get()
(in
IOTraits_T_long_unsigned_int_TCAP
)
get()
(in
CutChainMoverCreatorAP
)
get_residue_group_index_for_rotamer()
(in
RotamerSubset
)
get()
(in
IOTraits_T_short_int_TAP
)
get()
(in
CutChainMoverCreatorCAP
)
get_residue_group_index_for_rotamer()
(in
SymmetricRotamerSet_
)
get()
(in
IOTraits_T_short_int_TCAP
)
get()
(in
CyclizationMoverAP
)
get_residue_group_index_for_rotamer()
(in
FlexbbRotamerSet
)
get()
(in
IOTraits_T_short_unsigned_int_TAP
)
get()
(in
CyclizationMoverCAP
)
get_residue_hsasa()
(in
SasaCalc
)
get()
(in
IOTraits_T_short_unsigned_int_TCAP
)
get()
(in
DME_FilterMoverAP
)
get_residue_hsasa_bb()
(in
SasaCalc
)
get()
(in
IOTraits_T_unsigned_int_TAP
)
get()
(in
DME_FilterMoverCAP
)
get_residue_hsasa_sc()
(in
SasaCalc
)
get()
(in
IOTraits_T_unsigned_int_TCAP
)
get()
(in
DOFHistogramRecorderAP
)
get_residue_information()
(in
FileData
)
get()
(in
IntervalSet_DoubleAP
)
get()
(in
DOFHistogramRecorderCAP
)
get_residue_mask()
(in
Conformation
)
get()
(in
IntervalSet_DoubleCAP
)
get()
(in
DeleteChainsMoverAP
)
get_residue_mask()
(in
SymmetricConformation
)
get()
(in
IntervalSet_T_double_TAP
)
get()
(in
DeleteChainsMoverCAP
)
get_residue_mask()
(in
ProtectedConformation
)
get()
(in
IntervalSet_T_double_TCAP
)
get()
(in
DeleteChainsMoverCreatorAP
)
get_residue_num()
(in
PcsInputLine
)
get()
(in
MultiDimensionalHistogramAP
)
get()
(in
DeleteChainsMoverCreatorCAP
)
get_residue_pair_rt6()
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
get()
(in
MultiDimensionalHistogramCAP
)
get()
(in
DesignRepackMoverAP
)
get_residue_pair_xform()
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
get()
(in
NumericTraits_T_double_TAP
)
get()
(in
DesignRepackMoverCAP
)
get_residue_path_distances()
(in
rosetta.core.chemical._core_chemical_
)
get()
(in
NumericTraits_T_double_TCAP
)
get()
(in
DisulfideInsertionMoverAP
)
get_residue_pucker_state()
(in
rosetta.core.chemical.rna._core_chemical_rna_
)
get()
(in
NumericTraits_T_float_TAP
)
get()
(in
DisulfideInsertionMoverCAP
)
get_residue_pucker_state()
(in
rosetta.core.pose.rna._core_pose_rna_
)
get()
(in
NumericTraits_T_float_TCAP
)
get()
(in
DisulfideInsertionMoverCreatorAP
)
get_residue_residue_h2o_hbonds_1way()
(in
WaterAdductHBondPotential
)
get()
(in
NumericTraits_T_long_double_TAP
)
get()
(in
DisulfideInsertionMoverCreatorCAP
)
get_residue_sasa()
(in
SasaCalc
)
get()
(in
NumericTraits_T_long_double_TCAP
)
get()
(in
DumpPdbAP
)
get_residue_sasa_bb()
(in
SasaCalc
)
get()
(in
Polynomial_1dAP
)
get()
(in
DumpPdbCAP
)
get_residue_sasa_sc()
(in
SasaCalc
)
get()
(in
Polynomial_1dCAP
)
get()
(in
DumpPdbCreatorAP
)
get_residue_selector()
(in
rosetta.protocols.denovo_design._protocols_denovo_design_
)
get()
(in
Py_xyzTransform_doubleAP
)
get()
(in
DumpPdbCreatorCAP
)
get_residue_type_begin()
(in
RotamerSetBase
)
get()
(in
Py_xyzTransform_doubleCAP
)
get()
(in
EnergyCutRotamerTrialsMinMoverAP
)
get_residue_type_begin()
(in
RotamerSet
)
get()
(in
RocCurveAP
)
get()
(in
EnergyCutRotamerTrialsMinMoverCAP
)
get_residue_type_begin()
(in
RotamerSet_
)
get()
(in
RocCurveCAP
)
get()
(in
EnergyCutRotamerTrialsMoverAP
)
get_residue_type_begin()
(in
RotamerSubset
)
get()
(in
RocPointAP
)
get()
(in
EnergyCutRotamerTrialsMoverCAP
)
get_residue_type_begin()
(in
SymmetricRotamerSet_
)
get()
(in
RocPointCAP
)
get()
(in
ExtendedPoseMoverAP
)
get_residue_type_begin()
(in
FlexbbRotamerSet
)
get()
(in
SingleLinkClustererAP
)
get()
(in
ExtendedPoseMoverCAP
)
get_residue_type_index_for_rotamer()
(in
RotamerSetBase
)
get()
(in
SingleLinkClustererCAP
)
get()
(in
ExtendedPoseMoverCreatorAP
)
get_residue_type_index_for_rotamer()
(in
RotamerSet
)
get()
(in
UniformRotationSampler
)
get()
(in
ExtendedPoseMoverCreatorCAP
)
get_residue_type_index_for_rotamer()
(in
RotamerSet_
)
get()
(in
UniformRotationSamplerAP
)
get()
(in
FavorSequenceProfileAP
)
get_residue_type_index_for_rotamer()
(in
RotamerSubset
)
get()
(in
UniformRotationSamplerCAP
)
get()
(in
FavorSequenceProfileCAP
)
get_residue_type_index_for_rotamer()
(in
SymmetricRotamerSet_
)
get()
(in
XformHash32AP
)
get()
(in
FavorSequenceProfileCreatorAP
)
get_residue_type_index_for_rotamer()
(in
FlexbbRotamerSet
)
get()
(in
XformHash32CAP
)
get()
(in
FavorSequenceProfileCreatorCAP
)
get_residue_type_set()
(in
SwitchResidueTypeSetMover
)
get()
(in
XformHash64AP
)
get()
(in
FavorSymmetricSequenceAP
)
get_residue_type_with_variant_added()
(in
ResidueTypeSet
)
get()
(in
XformHash64CAP
)
get()
(in
FavorSymmetricSequenceCAP
)
get_residue_type_with_variant_removed()
(in
ResidueTypeSet
)
get()
(in
XformsAP
)
get()
(in
FavorSymmetricSequenceCreatorAP
)
get_residue_weight()
(in
Conformation
)
get()
(in
XformsCAP
)
get()
(in
FavorSymmetricSequenceCreatorCAP
)
get_residue_weight()
(in
SymmetricConformation
)
get()
(in
urs_QuatAP
)
get()
(in
FindConsensusSequenceAP
)
get_residue_weight()
(in
ProtectedConformation
)
get()
(in
urs_QuatCAP
)
get()
(in
FindConsensusSequenceCAP
)
get_residue_weight_by_ss()
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
get()
(in
xyzMatrix_T_float_TAP
)
get()
(in
FindConsensusSequenceCreatorAP
)
get_residue_weights()
(in
FoldTreeHybridize
)
get()
(in
xyzMatrix_T_float_TCAP
)
get()
(in
FindConsensusSequenceCreatorCAP
)
get_residues()
(in
Ligand_info
)
get()
(in
xyzTransform_T_double_TAP
)
get()
(in
ForceDisulfidesMoverAP
)
get_residues()
(in
Loop
)
get()
(in
xyzTransform_T_double_TCAP
)
get()
(in
ForceDisulfidesMoverCAP
)
get_residues()
(in
Loops
)
get()
(in
xyzTransform_T_float_TAP
)
get()
(in
ForceDisulfidesMoverCreatorAP
)
get_residues()
(in
HotspotDisjointedFoldTreeMover
)
get()
(in
xyzTransform_T_float_TCAP
)
get()
(in
ForceDisulfidesMoverCreatorCAP
)
get_residues()
(in
PreventResiduesFromRepackingOperation
)
get()
(in
ASTPrinterAP
)
get()
(in
FragmentCostAP
)
get_residues()
(in
RestrictResiduesToRepackingOperation
)
get()
(in
ASTPrinterCAP
)
get()
(in
FragmentCostCAP
)
get_residues_to_rebuild()
(in
SequenceShiftMover
)
get()
(in
ASTVisitorAP
)
get()
(in
FragmentMoverAP
)
get_resis()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
ASTVisitorCAP
)
get()
(in
FragmentMoverCAP
)
get_reslabels()
(in
PDBInfo
)
get()
(in
AbsoluteValueExpressionAP
)
get()
(in
GenericMonteCarloMoverAP
)
get_resname()
(in
MetalSiteResidue
)
get()
(in
AbsoluteValueExpressionCAP
)
get()
(in
GenericMonteCarloMoverCAP
)
get_resnum()
(in
rosetta.core.pose._core_pose_
)
get()
(in
AddExpressionAP
)
get()
(in
GenericMonteCarloMoverCreatorAP
)
get_resNum()
(in
SandwichFragment
)
get()
(in
AddExpressionCAP
)
get()
(in
GenericMonteCarloMoverCreatorCAP
)
get_resnum()
(in
BoltzmannRotamerMover
)
get()
(in
AndExpressionAP
)
get()
(in
GreenPackerAP
)
get_resnum()
(in
CoupledMover
)
get()
(in
AndExpressionCAP
)
get()
(in
GreenPackerCAP
)
get_resnum()
(in
ShortBackrubMover
)
get()
(in
ArithmeticASTExpressionAP
)
get()
(in
GroupDiscriminatorAP
)
get_resnum_and_chain()
(in
rosetta.utility._utility_
)
get()
(in
ArithmeticASTExpressionCAP
)
get()
(in
GroupDiscriminatorCAP
)
get_resnum_and_chain_from_one_tag()
(in
rosetta.utility._utility_
)
get()
(in
ArithmeticASTFactorAP
)
get()
(in
GunnCostAP
)
get_resnum_from_pdb_numbering()
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
get()
(in
ArithmeticASTFactorCAP
)
get()
(in
GunnCostCAP
)
get_resnum_from_single_string()
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
get()
(in
ArithmeticASTFunctionAP
)
get()
(in
GunnTupleAP
)
get_resnum_from_single_string_w_landmark()
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
get()
(in
ArithmeticASTFunctionCAP
)
get()
(in
GunnTupleCAP
)
get_resnum_from_strings()
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
get()
(in
ArithmeticASTNodeAP
)
get()
(in
IonizableResidueAP
)
get_resnum_list()
(in
rosetta.core.pose._core_pose_
)
get()
(in
ArithmeticASTNodeCAP
)
get()
(in
IonizableResidueCAP
)
get_resnum_list_ordered()
(in
rosetta.core.pose._core_pose_
)
get()
(in
ArithmeticASTRestExpressionAP
)
get()
(in
LoadPDBMoverAP
)
get_resnum_to_subunit_component()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
ArithmeticASTRestExpressionCAP
)
get()
(in
LoadPDBMoverCAP
)
get_resnums_from_strings_with_ranges()
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
get()
(in
ArithmeticASTRestTermAP
)
get()
(in
LoadPDBMoverCreatorAP
)
get_resource()
(in
ResourceManager
)
get()
(in
ArithmeticASTRestTermCAP
)
get()
(in
LoadPDBMoverCreatorCAP
)
get_resource()
(in
JD2ResourceManager
)
get()
(in
ArithmeticASTTermAP
)
get()
(in
LoadUnboundRotMoverAP
)
get_resource_by_job_tag()
(in
LazyResourceManager
)
get()
(in
ArithmeticASTTermCAP
)
get()
(in
LoadUnboundRotMoverCAP
)
get_resource_loader()
(in
FallbackConfiguration
)
get()
(in
ArithmeticASTValueAP
)
get()
(in
LoadUnboundRotMoverCreatorAP
)
get_resource_loader()
(in
NativeFallbackConfiguration
)
get()
(in
ArithmeticASTValueCAP
)
get()
(in
LoadUnboundRotMoverCreatorCAP
)
get_resource_loader()
(in
LoopsFileFallbackConfiguration
)
get()
(in
ArithmeticScannerAP
)
get()
(in
LoggedFragmentMoverAP
)
get_resource_loader()
(in
SurfaceVectorFallbackConfiguration
)
get()
(in
ArithmeticScannerCAP
)
get()
(in
LoggedFragmentMoverCAP
)
get_resource_options()
(in
FallbackConfiguration
)
get()
(in
BinaryExpressionAP
)
get()
(in
MSDMoverAP
)
get_resource_options()
(in
NativeFallbackConfiguration
)
get()
(in
BinaryExpressionCAP
)
get()
(in
MSDMoverCAP
)
get_resource_options()
(in
LoopsFileFallbackConfiguration
)
get()
(in
BooleanExpressionCreatorAP
)
get()
(in
MSDMoverCreatorAP
)
get_resource_options()
(in
SurfaceVectorFallbackConfiguration
)
get()
(in
BooleanExpressionCreatorCAP
)
get()
(in
MSDMoverCreatorCAP
)
get_resource_tags_for_job_tag()
(in
LazyResourceManager
)
get()
(in
BooleanExpressionScannerAP
)
get()
(in
MakePolyXMoverAP
)
get_restrict_partners_to_chains()
(in
PeptideDeriverFilter
)
get()
(in
BooleanExpressionScannerCAP
)
get()
(in
MakePolyXMoverCAP
)
get_restrict_receptors_to_chains()
(in
PeptideDeriverFilter
)
get()
(in
DivideExpressionAP
)
get()
(in
MakePolyXMoverCreatorAP
)
get_rg()
(in
rosetta.protocols.sic_dock._protocols_sic_dock_
)
get()
(in
DivideExpressionCAP
)
get()
(in
MakePolyXMoverCreatorCAP
)
get_rigid_body_confs()
(in
SearchPatternRotSetOp
)
get()
(in
EqualsExpressionAP
)
get()
(in
MembraneTopologyAP
)
get_rigid_body_confs()
(in
RigidBodyMoveBaseRSO
)
get()
(in
EqualsExpressionCAP
)
get()
(in
MembraneTopologyCAP
)
get_rigid_body_confs()
(in
RigidBodyMoveRSO
)
get()
(in
ExpressionAP
)
get()
(in
MembraneTopologyCreatorAP
)
get_rigid_body_jumps()
(in
rosetta.protocols.farna._protocols_farna_
)
get()
(in
ExpressionCAP
)
get()
(in
MembraneTopologyCreatorCAP
)
get_rigid_body_mover()
(in
CoupledMover
)
get()
(in
ExpressionCreatorAP
)
get()
(in
MinMoverAP
)
get_rigid_body_values()
(in
RigidBodyStepWiseSamplerWithResidueAlternatives
)
get()
(in
ExpressionCreatorCAP
)
get()
(in
MinMoverCAP
)
get_rigid_body_values()
(in
RigidBodyStepWiseSamplerWithResidueList
)
get()
(in
FunctionTokenAP
)
get()
(in
MinMoverCreatorAP
)
get_ring_current_deriv()
(in
rosetta.core.scoring.rna.chemical_shift._core_scoring_rna_chemical_shift_
)
get()
(in
FunctionTokenCAP
)
get()
(in
MinMoverCreatorCAP
)
get_rmsd()
(in
AnchoredDesignMover
)
get()
(in
GTE_ExpressionAP
)
get()
(in
MinPackMoverAP
)
get_rmsd()
(in
rosetta.protocols.loophash._protocols_loophash_
)
get()
(in
GTE_ExpressionCAP
)
get()
(in
MinPackMoverCAP
)
get_RMSD()
(in
MotifMatch
)
get()
(in
GT_ExpressionAP
)
get()
(in
MinPackMoverCreatorAP
)
get_rmsd()
(in
SmallMol
)
get()
(in
GT_ExpressionCAP
)
get()
(in
MinPackMoverCreatorCAP
)
get_rmsd()
(in
rosetta.protocols.stepwise.modeler.align._protocols_stepwise_modeler_align_
)
get()
(in
ITEExpressionAP
)
get()
(in
MinimalRotamerAP
)
get_rmsd_no_superimpose()
(in
StepWisePoseAligner
)
get()
(in
ITEExpressionCAP
)
get()
(in
MinimalRotamerCAP
)
get_RMSD_only_this()
(in
AnchoredDesignMover
)
get()
(in
LTE_ExpressionAP
)
get()
(in
MissingDensityToJumpMoverAP
)
get_rmsd_over_all_poses()
(in
StepWisePoseAligner
)
get()
(in
LTE_ExpressionCAP
)
get()
(in
MissingDensityToJumpMoverCAP
)
get_rmsd_target_tolerance()
(in
ShakeStructureMover
)
get()
(in
LT_ExpressionAP
)
get()
(in
ModifyVariantTypeMoverAP
)
get_RNA_AtomVDW()
(in
ScoringManager
)
get()
(in
LT_ExpressionCAP
)
get()
(in
ModifyVariantTypeMoverCAP
)
get_rna_base_centroid()
(in
rosetta.core.chemical.rna._core_chemical_rna_
)
get()
(in
LiteralExpressionAP
)
get()
(in
ModifyVariantTypeMoverCreatorAP
)
get_rna_base_coordinate_system()
(in
rosetta.core.chemical.rna._core_chemical_rna_
)
get()
(in
LiteralExpressionCAP
)
get()
(in
ModifyVariantTypeMoverCreatorCAP
)
get_rna_base_coordinate_system_from_CS_params()
(in
rosetta.core.scoring.rna.chemical_shift._core_scoring_rna_chemical_shift_
)
get()
(in
LiteralTokenAP
)
get()
(in
MonteCarloRecoverAP
)
get_rna_base_pairing_status()
(in
RNA_DMS_LowResolutionPotential
)
get()
(in
LiteralTokenCAP
)
get()
(in
MonteCarloRecoverCAP
)
get_RNA_ChemicalShiftPotential()
(in
ScoringManager
)
get()
(in
MaxExpressionAP
)
get()
(in
MonteCarloRecoverCreatorAP
)
get_RNA_CS_residue_parameters()
(in
RNA_CS_parameters
)
get()
(in
MaxExpressionCAP
)
get()
(in
MonteCarloRecoverCreatorCAP
)
get_rna_data_info()
(in
rosetta.core.io.rna._core_io_rna_
)
get()
(in
MetaMaxExpressionAP
)
get()
(in
MonteCarloResetAP
)
get_RNA_DMS_LowResolutionPotential()
(in
ScoringManager
)
get()
(in
MetaMaxExpressionCAP
)
get()
(in
MonteCarloResetCAP
)
get_RNA_DMS_Potential()
(in
ScoringManager
)
get()
(in
MetaMinExpressionAP
)
get()
(in
MonteCarloResetCreatorAP
)
get_RNA_LowResolutionPotential()
(in
ScoringManager
)
get()
(in
MetaMinExpressionCAP
)
get()
(in
MonteCarloResetCreatorCAP
)
get_rna_pairing_list()
(in
RNA_StructureParameters
)
get()
(in
MinExpressionAP
)
get()
(in
MonteCarloTestAP
)
get_rna_secstruct()
(in
rosetta.protocols.farna._protocols_farna_
)
get()
(in
MinExpressionCAP
)
get()
(in
MonteCarloTestCAP
)
get_rna_stack_score()
(in
RNA_LowResolutionPotential
)
get()
(in
MultiplyExpressionAP
)
get()
(in
MonteCarloTestCreatorAP
)
get_RNAring_sasa()
(in
GenPharmacophore
)
get()
(in
MultiplyExpressionCAP
)
get()
(in
MonteCarloTestCreatorCAP
)
get_root()
(in
SymmData
)
get()
(in
NaryExpressionAP
)
get()
(in
MutateResidueAP
)
get_root()
(in
SmallMol
)
get()
(in
NaryExpressionCAP
)
get()
(in
MutateResidueCAP
)
get_root_atomno()
(in
rosetta.core.conformation._core_conformation_
)
get()
(in
NotExpressionAP
)
get()
(in
MutateResidueCreatorAP
)
get_root_residue_root_atomno()
(in
rosetta.core.conformation._core_conformation_
)
get()
(in
NotExpressionCAP
)
get()
(in
MutateResidueCreatorCAP
)
get_rosetta_database_path()
(in
rosetta
)
get()
(in
OrExpressionAP
)
get()
(in
O2M_MutateMoverAP
)
get_ROSETTA_SASA_radii()
(in
RotamerDotsRadiusData
)
get()
(in
OrExpressionCAP
)
get()
(in
O2M_MutateMoverCAP
)
get_rot_mag()
(in
RigidBodyPerturbMover
)
get()
(in
SimpleExpressionCreatorAP
)
get()
(in
PDBReloadMoverAP
)
get_rot_magnitude()
(in
DockingHighResLegacy
)
get()
(in
SimpleExpressionCreatorCAP
)
get()
(in
PDBReloadMoverCAP
)
get_rotamer()
(in
SingleResidueDunbrackLibrary
)
get()
(in
SimpleTokenAP
)
get()
(in
PDBReloadMoverCreatorAP
)
get_rotamer()
(in
SingleResiduePeptoidLibrary
)
get()
(in
SimpleTokenCAP
)
get()
(in
PDBReloadMoverCreatorCAP
)
get_rotamer()
(in
SymmOnTheFlyNode
)
get()
(in
SquarerootExpressionAP
)
get()
(in
PSSM2BfactorMoverAP
)
get_rotamer_from_chi()
(in
SingleResidueDunbrackLibrary
)
get()
(in
SquarerootExpressionCAP
)
get()
(in
PSSM2BfactorMoverCAP
)
get_rotamer_from_chi()
(in
SingleResiduePeptoidLibrary
)
get()
(in
SubtractExpressionAP
)
get()
(in
PSSM2BfactorMoverCreatorAP
)
get_rotamer_recovery()
(in
RotamerRecoveryFactory
)
get()
(in
SubtractExpressionCAP
)
get()
(in
PSSM2BfactorMoverCreatorCAP
)
get_rotamer_recovery()
(in
RotamerRecovery
)
get()
(in
TokenAP
)
get()
(in
PackRotamersMoverAP
)
get_rotamer_recovery_comparer()
(in
RotamerRecoveryFactory
)
get()
(in
TokenCAP
)
get()
(in
PackRotamersMoverCAP
)
get_rotamer_recovery_protocol()
(in
RotamerRecoveryFactory
)
get()
(in
TokenSetAP
)
get()
(in
PackRotamersMoverCreatorAP
)
get_rotamer_recovery_reporter()
(in
RotamerRecoveryFactory
)
get()
(in
TokenSetCAP
)
get()
(in
PackRotamersMoverCreatorCAP
)
get_rotamer_samples()
(in
SingleResidueCenrotLibrary
)
get()
(in
UnaryExpressionAP
)
get()
(in
PackRotamersMoverLazyAP
)
get_rotamer_set()
(in
TryRotamers
)
get()
(in
UnaryExpressionCAP
)
get()
(in
PackRotamersMoverLazyCAP
)
get_RotamerLibraryName()
(in
ResidueType
)
get()
(in
VariableExpressionAP
)
get()
(in
PackRotamersMoverLazyCreatorAP
)
get_rotamers()
(in
SingleLigandRotamerLibrary
)
get()
(in
VariableExpressionCAP
)
get()
(in
PackRotamersMoverLazyCreatorCAP
)
get_rotamers()
(in
LigandMotifSearch
)
get()
(in
VariableTokenAP
)
get()
(in
PeptideStapleMoverAP
)
get_rotamers_born_radii()
(in
GenBornPotential
)
get()
(in
VariableTokenCAP
)
get()
(in
PeptideStapleMoverCAP
)
get_rotated_and_translated_pose()
(in
MotifGraftMover
)
get()
(in
SHTAP
)
get()
(in
PeriodicBoxMoverAP
)
get_rotation()
(in
Jump
)
get()
(in
SHTCAP
)
get()
(in
PeriodicBoxMoverCAP
)
get_rotation()
(in
RT
)
get()
(in
SO3coeffsAP
)
get()
(in
PeriodicBoxMoverCreatorAP
)
get_rotation_magnitude()
(in
CoupledMover
)
get()
(in
SO3coeffsCAP
)
get()
(in
PeriodicBoxMoverCreatorCAP
)
get_rotation_matrix()
(in
SymmData
)
get()
(in
kiss_dct_stateAP
)
get()
(in
ProlineFixMoverAP
)
get_rotation_matrix()
(in
EllipsoidalRandomizationMover
)
get()
(in
kiss_dct_stateCAP
)
get()
(in
ProlineFixMoverCAP
)
get_rotation_std_dev()
(in
CoupledMover
)
get()
(in
kiss_fft_stateAP
)
get()
(in
RandomOmegaFlipMoverAP
)
get_rotation_std_dev()
(in
ShortBackrubMover
)
get()
(in
kiss_fft_stateCAP
)
get()
(in
RandomOmegaFlipMoverCAP
)
get_rotblock_index_for_sampling_rotamer()
(in
ContinuousRotamerSet
)
get()
(in
kiss_fftnd_stateAP
)
get()
(in
RandomOmegaFlipMoverCreatorAP
)
get_rpp_charge()
(in
rosetta.core.chemical._core_chemical_
)
get()
(in
kiss_fftnd_stateCAP
)
get()
(in
RandomOmegaFlipMoverCreatorCAP
)
get_rsd_library()
(in
RotamerLibrary
)
get()
(in
kiss_fftndr_stateAP
)
get()
(in
RandomTorsionMoverAP
)
get_rt_over_leap()
(in
rosetta.protocols.loophash._protocols_loophash_
)
get()
(in
kiss_fftndr_stateCAP
)
get()
(in
RandomTorsionMoverCAP
)
get_rt_over_leap_fast()
(in
rosetta.protocols.loophash._protocols_loophash_
)
get()
(in
kiss_fftr_stateAP
)
get()
(in
RandomTorsionMoverCreatorAP
)
get_rt_over_leap_without_foldtree_bs()
(in
rosetta.protocols.loophash._protocols_loophash_
)
get()
(in
kiss_fftr_stateCAP
)
get()
(in
RandomTorsionMoverCreatorCAP
)
get_run_time()
(in
WorkUnitBase
)
get()
(in
kiss_fftsplit_stateAP
)
get()
(in
RepackSidechainsMoverAP
)
get_run_time()
(in
WorkUnit
)
get()
(in
kiss_fftsplit_stateCAP
)
get()
(in
RepackSidechainsMoverCAP
)
get_Rvalue()
(in
NonPlaidFingerprint
)
get()
(in
BallAP
)
get()
(in
RepackSidechainsMoverCreatorAP
)
get_safe_max_dis2()
(in
Etable
)
get()
(in
BallCAP
)
get()
(in
RepackSidechainsMoverCreatorCAP
)
get_sample_index()
(in
MutationSetDesignOperation
)
get()
(in
CounterAP
)
get()
(in
RepeatPropagationMoverAP
)
get_sample_nonpivot_torsions()
(in
KinematicMover
)
get()
(in
CounterCAP
)
get()
(in
RepeatPropagationMoverCAP
)
get_sample_res_for_pose()
(in
rosetta.core.pose.full_model_info._core_pose_full_model_info_
)
get()
(in
SixDCoordinateBinnerAP
)
get()
(in
RepeatPropagationMoverCreatorAP
)
get_sampler_options()
(in
StepWiseModelerOptions
)
get()
(in
SixDCoordinateBinnerCAP
)
get()
(in
RepeatPropagationMoverCreatorCAP
)
get_sasa()
(in
RotamerDots
)
get()
(in
SixDOffsetTreeAP
)
get()
(in
ReportEffectivePKAAP
)
get_sasa()
(in
rosetta.core.scoring.motif._core_scoring_motif_
)
get()
(in
SixDOffsetTreeCAP
)
get()
(in
ReportEffectivePKACAP
)
get_sasa_dot_locations()
(in
rosetta.core.scoring.packstat._core_scoring_packstat_
)
get()
(in
bin_index_hasherAP
)
get()
(in
ReportEffectivePKACreatorAP
)
get_sasa_method_from_string()
(in
rosetta.core.scoring.sasa._core_scoring_sasa_
)
get()
(in
bin_index_hasherCAP
)
get()
(in
ReportEffectivePKACreatorCAP
)
get_sasa_radii_parameter_name()
(in
rosetta.core.scoring.sasa._core_scoring_sasa_
)
get()
(in
xyzStripeHashAP
)
get()
(in
RepulsiveOnlyMoverAP
)
get_sasa_radii_set_from_string()
(in
rosetta.core.scoring.sasa._core_scoring_sasa_
)
get()
(in
xyzStripeHashCAP
)
get()
(in
RepulsiveOnlyMoverCAP
)
get_sc_bb_sasa()
(in
rosetta.core.scoring.sasa._core_scoring_sasa_
)
get()
(in
xyzStripeHashWithMeta_T_float_TAP
)
get()
(in
ResTypeFragmentMoverAP
)
get_sc_bb_sasa_per_res()
(in
rosetta.core.scoring.sasa._core_scoring_sasa_
)
get()
(in
xyzStripeHashWithMeta_T_float_TCAP
)
get()
(in
ResTypeFragmentMoverCAP
)
get_sc_bbE()
(in
RotamerSets
)
get()
(in
xyzStripeHashWithMeta_floatAP
)
get()
(in
ResetBaselineMoverAP
)
get_sc_interface_builder()
(in
MoveMapBuilder
)
get()
(in
xyzStripeHashWithMeta_floatCAP
)
get()
(in
ResetBaselineMoverCAP
)
get_sc_min()
(in
ShakeStructureMover
)
get()
(in
BicubicSplineAP
)
get()
(in
ResetBaselineMoverCreatorAP
)
get_scaffold2motif_size_change()
(in
MotifMatch
)
get()
(in
BicubicSplineCAP
)
get()
(in
ResetBaselineMoverCreatorCAP
)
get_scaffold_fragment_data()
(in
MotifMatch
)
get()
(in
CompoundInterpolatorAP
)
get()
(in
ResidueTypeConstraintMoverAP
)
get_scaffold_ranges()
(in
MotifMatch
)
get()
(in
CompoundInterpolatorCAP
)
get()
(in
ResidueTypeConstraintMoverCAP
)
get_scaffold_status()
(in
HotspotStub
)
get()
(in
CubicSplineAP
)
get()
(in
ResidueTypeConstraintMoverCreatorAP
)
get_score()
(in
RNA_SuitePotential
)
get()
(in
CubicSplineCAP
)
get()
(in
ResidueTypeConstraintMoverCreatorCAP
)
get_score()
(in
ConstraintedOptimizationWeightFunc
)
get()
(in
InterpolatorAP
)
get()
(in
ReturnSidechainMoverAP
)
get_score()
(in
DDGBindOptEData
)
get()
(in
InterpolatorCAP
)
get()
(in
ReturnSidechainMoverCAP
)
get_score()
(in
DDGMutationOptEData
)
get()
(in
LinearFunctionAP
)
get()
(in
RingConformationMoverAP
)
get_score()
(in
DGBindOptEData
)
get()
(in
LinearFunctionCAP
)
get()
(in
RingConformationMoverCAP
)
get_score()
(in
NestedEnergyTermDDGMutationOptEData
)
get()
(in
PointAP
)
get()
(in
RingConformationMoverCreatorAP
)
get_score()
(in
NestedEnergyTermPNatAAOptEPositionData
)
get()
(in
PointCAP
)
get()
(in
RingConformationMoverCreatorCAP
)
get_score()
(in
OptEPositionData
)
get()
(in
PolycubicSplineAP
)
get()
(in
RotamerTrialsMinMoverAP
)
get_score()
(in
PNatAAOptEPositionData
)
get()
(in
PolycubicSplineCAP
)
get()
(in
RotamerTrialsMinMoverCAP
)
get_score()
(in
PNatLigPoseOptEData
)
get()
(in
SimpleInterpolatorAP
)
get()
(in
RotamerTrialsMinMoverCreatorAP
)
get_score()
(in
PNatRotOptEPositionData
)
get()
(in
SimpleInterpolatorCAP
)
get()
(in
RotamerTrialsMinMoverCreatorCAP
)
get_score()
(in
PNatStructureOptEData
)
get()
(in
SplineGeneratorAP
)
get()
(in
RotamerTrialsMoverAP
)
get_score()
(in
PSSMOptEPositionData
)
get()
(in
SplineGeneratorCAP
)
get()
(in
RotamerTrialsMoverCAP
)
get_score()
(in
ConstraintScoreCutoffFilter
)
get()
(in
TricubicSplineAP
)
get()
(in
RotamerTrialsMoverCreatorAP
)
get_score()
(in
ScoreCutoffFilter
)
get()
(in
TricubicSplineCAP
)
get()
(in
RotamerTrialsMoverCreatorCAP
)
get_score_components()
(in
FragmentScoreMap
)
get()
(in
interp_rangeAP
)
get()
(in
RotamerizeMoverAP
)
get_score_fast()
(in
TMalign
)
get()
(in
interp_rangeCAP
)
get()
(in
RotamerizeMoverCAP
)
get_score_for_struct_id_and_score_term_from_job_data()
(in
rosetta.protocols.features._protocols_features_
)
get()
(in
CompareKDPointsAP
)
get()
(in
SaneMinMoverAP
)
get_score_for_struct_id_and_score_term_from_score_data()
(in
rosetta.protocols.features._protocols_features_
)
get()
(in
CompareKDPointsCAP
)
get()
(in
SaneMinMoverCAP
)
get_score_function()
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
HyperRectangleAP
)
get()
(in
SaneMinMoverCreatorAP
)
get_score_function()
(in
LoopBuilder
)
get()
(in
HyperRectangleCAP
)
get()
(in
SaneMinMoverCreatorCAP
)
get_score_function()
(in
LoopProtocol
)
get()
(in
KDNodeAP
)
get()
(in
ScoreMoverAP
)
get_score_function()
(in
MinimizationRefiner
)
get()
(in
KDNodeCAP
)
get()
(in
ScoreMoverCAP
)
get_score_function()
(in
RepackingRefiner
)
get()
(in
KDPointAP
)
get()
(in
ScoreMoverCreatorAP
)
get_score_function()
(in
RotamerTrialsRefiner
)
get()
(in
KDPointCAP
)
get()
(in
ScoreMoverCreatorCAP
)
get_score_function()
(in
PrepareForFullatom
)
get()
(in
KDPointListAP
)
get()
(in
SequenceProfileMoverAP
)
get_score_function()
(in
ScoringSecMatchRPE
)
get()
(in
KDPointListCAP
)
get()
(in
SequenceProfileMoverCAP
)
get_score_function_legacy()
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
KDPoint_MinDistAP
)
get()
(in
SequenceProfileMoverCreatorAP
)
get_score_function_name()
(in
rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
)
get()
(in
KDPoint_MinDistCAP
)
get()
(in
SequenceProfileMoverCreatorCAP
)
get_score_functionName()
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
KDTreeAP
)
get()
(in
SetReturningPackRotamersMoverAP
)
get_score_fxn()
(in
ClashBasedRepackShellSelector
)
get()
(in
KDTreeCAP
)
get()
(in
SetReturningPackRotamersMoverCAP
)
get_score_fxn()
(in
CoupledMover
)
get()
(in
pAP
)
get()
(in
SetTorsionAP
)
get_score_line_string()
(in
rosetta.core.pose._core_pose_
)
get()
(in
pCAP
)
get()
(in
SetTorsionCAP
)
get_score_manager()
(in
FragmentPicker
)
get()
(in
RmsDataAP
)
get()
(in
SetTorsionCreatorAP
)
get_score_map()
(in
rosetta.protocols.jobdist._protocols_jobdist_
)
get()
(in
RmsDataCAP
)
get()
(in
SetTorsionCreatorCAP
)
get_score_multiply_subunit()
(in
SymmData
)
get()
(in
lm_control_structAP
)
get()
(in
ShakeStructureMoverAP
)
get_score_name()
(in
FragmentScoringMethod
)
get()
(in
lm_control_structCAP
)
get()
(in
ShakeStructureMoverCAP
)
get_score_name()
(in
MakeFragmentScoringMethod
)
get()
(in
lm_status_structAP
)
get()
(in
ShearMoverAP
)
get_score_subunit()
(in
SymmData
)
get()
(in
lm_status_structCAP
)
get()
(in
ShearMoverCAP
)
get_score_type_id_from_score_term()
(in
rosetta.protocols.features._protocols_features_
)
get()
(in
RandomGeneratorAP
)
get()
(in
ShearMoverCreatorAP
)
get_scorefunction()
(in
DatabaseJobInputter
)
get()
(in
RandomGeneratorCAP
)
get()
(in
ShearMoverCreatorCAP
)
get_scorefunction()
(in
ShakeStructureMover
)
get()
(in
WeightedSamplerAP
)
get()
(in
ShortBackrubMoverAP
)
get_scorefunction_header()
(in
ddGMover
)
get()
(in
WeightedSamplerCAP
)
get()
(in
ShortBackrubMoverCAP
)
get_scorefunction_initialized()
(in
ShakeStructureMover
)
get()
(in
mt19937_RGAP
)
get()
(in
ShortBackrubMoverCreatorAP
)
get_scorefxn()
(in
OTFFlexbbInteractionGraph
)
get()
(in
mt19937_RGCAP
)
get()
(in
ShortBackrubMoverCreatorCAP
)
get_scorefxn()
(in
LigandBaseProtocol
)
get()
(in
standard_RGAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_scorefxn()
(in
LoopMover_Perturb_CCD
)
get()
(in
standard_RGCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_scorefxn()
(in
MultiObjective
)
get()
(in
uniform_RGAP
)
get()
(in
SmallMoverAP
)
get_scorefxn()
(in
PointMutScanDriver
)
get()
(in
uniform_RGCAP
)
get()
(in
SmallMoverCAP
)
get_scorefxn()
(in
RelaxProtocolBase
)
get()
(in
RotamerDumpMoverAP
)
get()
(in
SmallMoverCreatorAP
)
get_scorefxn()
(in
DisulfideInsertionMover
)
get()
(in
RotamerDumpMoverCAP
)
get()
(in
SmallMoverCreatorCAP
)
get_scorefxn()
(in
MultiPhosphateSampler
)
get()
(in
AbrelaxApplicationAP
)
get()
(in
SmoothFragmentMoverAP
)
get_scorefxn_deriver()
(in
PeptideDeriverFilter
)
get()
(in
AbrelaxApplicationCAP
)
get()
(in
SmoothFragmentMoverCAP
)
get_scorefxn_info()
(in
Energies
)
get()
(in
AbrelaxMoverAP
)
get()
(in
SuperimposeMoverAP
)
get_scoring_scheme()
(in
ScoringSchemeFactory
)
get()
(in
AbrelaxMoverCAP
)
get()
(in
SuperimposeMoverCAP
)
get_second_atom()
(in
AtomPairConstraintsData
)
get()
(in
AllResiduesChangedAP
)
get()
(in
SuperimposeMoverCreatorAP
)
get_second_atom()
(in
FourAtomsConstraintData
)
get()
(in
AllResiduesChangedCAP
)
get()
(in
SuperimposeMoverCreatorCAP
)
get_second_node_ind()
(in
Edge
)
get()
(in
AlternativePairingsAP
)
get()
(in
SwitchChainOrderMoverAP
)
get_second_node_ind()
(in
EdgeBase
)
get()
(in
AlternativePairingsCAP
)
get()
(in
SwitchChainOrderMoverCAP
)
get_second_node_num_states_per_aa()
(in
LazyEdge
)
get()
(in
ClassicAbinitioAP
)
get()
(in
SwitchChainOrderMoverCreatorAP
)
get_second_node_num_states_per_aa()
(in
PDEdge
)
get()
(in
ClassicAbinitioCAP
)
get()
(in
SwitchChainOrderMoverCreatorCAP
)
get_second_offset()
(in
FourAtomsConstraintData
)
get()
(in
ConstraintFragmentSamplerAP
)
get()
(in
SwitchResidueTypeSetMoverAP
)
get_secondary_prediction()
(in
SecondarySimilarity
)
get()
(in
ConstraintFragmentSamplerCAP
)
get()
(in
SwitchResidueTypeSetMoverCAP
)
get_secondary_prediction()
(in
TalosSSSimilarity
)
get()
(in
CoordinateConstraintKCAP
)
get()
(in
SwitchResidueTypeSetMoverCreatorAP
)
get_SecondaryStructurePotential()
(in
ScoringManager
)
get()
(in
CoordinateConstraintKCCAP
)
get()
(in
SwitchResidueTypeSetMoverCreatorCAP
)
get_secstruct()
(in
RNA_SecStructInfo
)
get()
(in
DomainAssemblyAP
)
get()
(in
TailsScoreMoverAP
)
get_secstruct()
(in
TorsionFragment
)
get()
(in
DomainAssemblyCAP
)
get()
(in
TailsScoreMoverCAP
)
get_secstruct()
(in
rosetta.protocols.membrane.geometry._protocols_membrane_geometry_
)
get()
(in
DomainAssemblyCreatorAP
)
get()
(in
TaskAwareMinMoverAP
)
get_seed()
(in
RandomGenerator
)
get()
(in
DomainAssemblyCreatorCAP
)
get()
(in
TaskAwareMinMoverCAP
)
get_segment_id()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
DoubleLayerKinematicAbinitioAP
)
get()
(in
TaskAwareMinMoverCreatorAP
)
get_selected_strands()
(in
StrandBundleFeatures
)
get()
(in
DoubleLayerKinematicAbinitioCAP
)
get()
(in
TaskAwareMinMoverCreatorCAP
)
get_selector_type()
(in
GeneralizedKIC
)
get()
(in
FixTemplateJumpSetupAP
)
get()
(in
ThermodynamicDataAP
)
get_selector_type()
(in
GeneralizedKICselector
)
get()
(in
FixTemplateJumpSetupCAP
)
get()
(in
ThermodynamicDataCAP
)
get_selector_type_by_name()
(in
GeneralizedKICselector
)
get()
(in
FoldConstraintsAP
)
get()
(in
TorsionDOFMoverAP
)
get_selector_type_name()
(in
GeneralizedKIC
)
get()
(in
FoldConstraintsCAP
)
get()
(in
TorsionDOFMoverCAP
)
get_selector_type_name()
(in
GeneralizedKICselector
)
get()
(in
FragmentSamplerAP
)
get()
(in
TorsionSetMoverAP
)
get_self_ptr()
(in
CacheableData
)
get()
(in
FragmentSamplerCAP
)
get()
(in
TorsionSetMoverCAP
)
get_self_ptr()
(in
ResidueType
)
get()
(in
HedgeArchiveAP
)
get()
(in
TumbleAP
)
get_self_ptr()
(in
ResidueTypeSet
)
get()
(in
HedgeArchiveCAP
)
get()
(in
TumbleCAP
)
get_self_ptr()
(in
Conformation
)
get()
(in
IterativeAbrelaxAP
)
get()
(in
TumbleCreatorAP
)
get_self_ptr()
(in
Residue
)
get()
(in
IterativeAbrelaxCAP
)
get()
(in
TumbleCreatorCAP
)
get_self_ptr()
(in
Parameters
)
get()
(in
IterativeBaseAP
)
get()
(in
UniformRotationMoverAP
)
get_self_ptr()
(in
ParametersSet
)
get()
(in
IterativeBaseCAP
)
get()
(in
UniformRotationMoverCAP
)
get_self_ptr()
(in
FragData
)
get()
(in
IterativeCentroidAP
)
get()
(in
UniformTranslationMoverAP
)
get_self_ptr()
(in
Graph
)
get()
(in
IterativeCentroidCAP
)
get()
(in
UniformTranslationMoverCAP
)
get_self_ptr()
(in
SilentStruct
)
get()
(in
IterativeFullatomAP
)
get()
(in
UserDefinedGroupDiscriminatorAP
)
get_self_ptr()
(in
Atom
)
get()
(in
IterativeFullatomCAP
)
get()
(in
UserDefinedGroupDiscriminatorCAP
)
get_self_ptr()
(in
PackerTask
)
get()
(in
JumpingFoldConstraintsWrapperAP
)
get()
(in
VallLookbackFragMoverAP
)
get_self_ptr()
(in
Pose
)
get()
(in
JumpingFoldConstraintsWrapperCAP
)
get()
(in
VallLookbackFragMoverCAP
)
get_self_ptr()
(in
ScoreFunction
)
get()
(in
KinematicAbinitioAP
)
get()
(in
VirtualRootMoverAP
)
get_self_ptr()
(in
HBond
)
get()
(in
KinematicAbinitioCAP
)
get()
(in
VirtualRootMoverCAP
)
get_self_ptr()
(in
Templates
)
get()
(in
KinematicControlAP
)
get()
(in
VirtualRootMoverCreatorAP
)
get_self_ptr()
(in
Environment
)
get()
(in
KinematicControlCAP
)
get()
(in
VirtualRootMoverCreatorCAP
)
get_self_ptr()
(in
FlexbbRotamerSets
)
get()
(in
KinematicTaskControlAP
)
get()
(in
WobbleMoverAP
)
get_self_ptr()
(in
FragmentPicker
)
get()
(in
KinematicTaskControlCAP
)
get()
(in
WobbleMoverCAP
)
get_self_ptr()
(in
VallChunk
)
get()
(in
LoopJumpFoldCstAP
)
get()
(in
ddGAP
)
get_self_ptr()
(in
VallProvider
)
get()
(in
LoopJumpFoldCstCAP
)
get()
(in
ddGCAP
)
get_self_ptr()
(in
BackboneGridSamplerHelper
)
get()
(in
MembraneAbinitioAP
)
get()
(in
ddGCreatorAP
)
get_self_ptr()
(in
BundleGridSamplerHelper
)
get()
(in
MembraneAbinitioCAP
)
get()
(in
ddGCreatorCAP
)
get_self_ptr()
(in
PerturbBundleOptions
)
get()
(in
PairingStatEntryAP
)
get()
(in
AsymFoldandDockMoveRbJumpMoverAP
)
get_self_ptr()
(in
MatcherTask
)
get()
(in
PairingStatEntryCAP
)
get()
(in
AsymFoldandDockMoveRbJumpMoverCAP
)
get_self_ptr()
(in
Mover
)
get()
(in
PairingStatisticsAP
)
get()
(in
AsymFoldandDockRbTrialMoverAP
)
get_self_ptr()
(in
WrapperOptEMultifunc
)
get()
(in
PairingStatisticsCAP
)
get()
(in
AsymFoldandDockRbTrialMoverCAP
)
get_self_ptr()
(in
EnzConstraintIO
)
get()
(in
ProtocolAP
)
get()
(in
InitializeByBinsAP
)
get_self_ptr()
(in
EnzConstraintParameters
)
get()
(in
ProtocolCAP
)
get()
(in
InitializeByBinsCAP
)
get_self_ptr()
(in
InvrotTreeNodeBase
)
get()
(in
ResolutionSwitcherAP
)
get()
(in
InitializeByBinsCreatorAP
)
get_self_ptr()
(in
TopologyClaimer
)
get()
(in
ResolutionSwitcherCAP
)
get()
(in
InitializeByBinsCreatorCAP
)
get_self_ptr()
(in
Tag
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
PerturbByBinsAP
)
get_self_weak_ptr()
(in
CacheableData
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
PerturbByBinsCAP
)
get_self_weak_ptr()
(in
ResidueType
)
get()
(in
SingletonBase_T_protocols_jumping_StandardPairingLibrary_TAP
)
get()
(in
PerturbByBinsCreatorAP
)
get_self_weak_ptr()
(in
ResidueTypeSet
)
get()
(in
SingletonBase_T_protocols_jumping_StandardPairingLibrary_TCAP
)
get()
(in
PerturbByBinsCreatorCAP
)
get_self_weak_ptr()
(in
Conformation
)
get()
(in
StrandConstraintsAP
)
get()
(in
ChiralMoverAP
)
get_self_weak_ptr()
(in
Residue
)
get()
(in
StrandConstraintsCAP
)
get()
(in
ChiralMoverCAP
)
get_self_weak_ptr()
(in
Parameters
)
get()
(in
TemplateAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_self_weak_ptr()
(in
ParametersSet
)
get()
(in
TemplateCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_self_weak_ptr()
(in
Atom
)
get()
(in
TemplateJumpSetupAP
)
get()
(in
HbsPatcherAP
)
get_self_weak_ptr()
(in
Pose
)
get()
(in
TemplateJumpSetupCAP
)
get()
(in
HbsPatcherCAP
)
get_self_weak_ptr()
(in
Templates
)
get()
(in
TemplatesAP
)
get()
(in
OopDPuckMinusMoverAP
)
get_self_weak_ptr()
(in
Environment
)
get()
(in
TemplatesCAP
)
get()
(in
OopDPuckMinusMoverCAP
)
get_self_weak_ptr()
(in
FlexbbRotamerSets
)
get()
(in
_HashEntryAP
)
get()
(in
OopDPuckPlusMoverAP
)
get_self_weak_ptr()
(in
FragmentPicker
)
get()
(in
_HashEntryCAP
)
get()
(in
OopDPuckPlusMoverCAP
)
get_self_weak_ptr()
(in
VallChunk
)
get()
(in
_MergableEntriesAP
)
get()
(in
OopMoverAP
)
get_self_weak_ptr()
(in
VallProvider
)
get()
(in
_MergableEntriesCAP
)
get()
(in
OopMoverCAP
)
get_self_weak_ptr()
(in
BackboneGridSamplerHelper
)
get()
(in
AbscriptLoopCloserCMAP
)
get()
(in
OopPatcherAP
)
get_self_weak_ptr()
(in
BundleGridSamplerHelper
)
get()
(in
AbscriptLoopCloserCMCAP
)
get()
(in
OopPatcherCAP
)
get_self_weak_ptr()
(in
PerturbBundleOptions
)
get()
(in
AbscriptLoopCloserCMCreatorAP
)
get()
(in
OopPuckMinusMoverAP
)
get_self_weak_ptr()
(in
Mover
)
get()
(in
AbscriptLoopCloserCMCreatorCAP
)
get()
(in
OopPuckMinusMoverCAP
)
get_self_weak_ptr()
(in
WrapperOptEMultifunc
)
get()
(in
AbscriptMoverAP
)
get()
(in
OopPuckPlusMoverAP
)
get_self_weak_ptr()
(in
EnzConstraintIO
)
get()
(in
AbscriptMoverCAP
)
get()
(in
OopPuckPlusMoverCAP
)
get_self_weak_ptr()
(in
EnzConstraintParameters
)
get()
(in
AbscriptMoverCreatorAP
)
get()
(in
OopRandomPuckMoverAP
)
get_self_weak_ptr()
(in
InvrotTreeNodeBase
)
get()
(in
AbscriptMoverCreatorCAP
)
get()
(in
OopRandomPuckMoverCAP
)
get_self_weak_ptr()
(in
TopologyClaimer
)
get()
(in
AbscriptStageMoverAP
)
get()
(in
OopRandomSmallMoverAP
)
get_self_weak_ptr()
(in
Tag
)
get()
(in
AbscriptStageMoverCAP
)
get()
(in
OopRandomSmallMoverCAP
)
get_semi_energy_dist()
(in
RotData
)
get()
(in
ConstraintPreparerAP
)
get()
(in
RationalMonteCarloAP
)
get_semi_prob_dist()
(in
RotData
)
get()
(in
ConstraintPreparerCAP
)
get()
(in
RationalMonteCarloCAP
)
get_semirotameric()
(in
MakeRotLibJob
)
get()
(in
ConstraintPreparerCreatorAP
)
get()
(in
JumpRotamerSidechainMoverAP
)
get_semirotameric()
(in
MakeRotLibOptionsData
)
get()
(in
ConstraintPreparerCreatorCAP
)
get()
(in
JumpRotamerSidechainMoverCAP
)
get_semirotameric()
(in
RotData
)
get()
(in
FragmentCMAP
)
get()
(in
JumpRotamerSidechainMoverCreatorAP
)
get_semirotameric_ncaa_rotlib()
(in
ResidueType
)
get()
(in
FragmentCMCAP
)
get()
(in
JumpRotamerSidechainMoverCreatorCAP
)
get_separated_interface_energy()
(in
InterfaceAnalyzerMover
)
get()
(in
FragmentCMCreatorAP
)
get()
(in
PerturbChiSidechainMoverAP
)
get_separated_interface_energy_ratio()
(in
InterfaceAnalyzerMover
)
get()
(in
FragmentCMCreatorCAP
)
get()
(in
PerturbChiSidechainMoverCAP
)
get_seq_design_options()
(in
rosetta.protocols.antibody.design._protocols_antibody_design_
)
get()
(in
FragmentJumpCMAP
)
get()
(in
PerturbChiSidechainMoverCreatorAP
)
get_seq_names()
(in
SequenceFactory
)
get()
(in
FragmentJumpCMCAP
)
get()
(in
PerturbChiSidechainMoverCreatorCAP
)
get_seq_recovery_cache()
(in
EnzdesCacheableObserver
)
get()
(in
FragmentJumpCMCreatorAP
)
get()
(in
PerturbRotamerSidechainMoverAP
)
get_seq_sep()
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
get()
(in
FragmentJumpCMCreatorCAP
)
get()
(in
PerturbRotamerSidechainMoverCAP
)
get_seq_sep_scale()
(in
SecondaryStructureWeights
)
get()
(in
JumpSampleDataAP
)
get()
(in
PerturbRotamerSidechainMoverCreatorAP
)
get_seqpos()
(in
MetalSiteResidue
)
get()
(in
JumpSampleDataCAP
)
get()
(in
PerturbRotamerSidechainMoverCreatorCAP
)
get_sequence()
(in
SequenceFactory
)
get()
(in
JumpSampleDataCreatorAP
)
get()
(in
SetChiMoverAP
)
get_sequence()
(in
CSTalosIO
)
get()
(in
JumpSampleDataCreatorCAP
)
get()
(in
SetChiMoverCAP
)
get_sequence()
(in
PhiPsiTalosIO
)
get()
(in
RigidChunkCMAP
)
get()
(in
SetChiMoverCreatorAP
)
get_sequence()
(in
VallChunk
)
get()
(in
RigidChunkCMCAP
)
get()
(in
SetChiMoverCreatorCAP
)
get_sequence()
(in
TorsionFragment
)
get()
(in
RigidChunkCMCreatorAP
)
get()
(in
SidechainMCMoverAP
)
get_sequence()
(in
EnzdesSeqRecoveryCache
)
get()
(in
RigidChunkCMCreatorCAP
)
get()
(in
SidechainMCMoverCAP
)
get_sequence_len()
(in
rosetta.core.pose._core_pose_
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
SidechainMCMoverCreatorAP
)
get_sequence_recovery()
(in
SequenceComparison
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
SidechainMCMoverCreatorCAP
)
get_sfxn_cycles()
(in
LoopProtocol
)
get()
(in
SingletonBase_T_protocols_jumping_StandardPairingLibrary_TAP
)
get()
(in
SidechainMoverAP
)
get_sha1_hash_excluding_chain()
(in
rosetta.core.pose._core_pose_
)
get()
(in
SingletonBase_T_protocols_jumping_StandardPairingLibrary_TCAP
)
get()
(in
SidechainMoverBaseAP
)
get_shared_silent_data()
(in
SilentFileData
)
get()
(in
StagePreparerAP
)
get()
(in
SidechainMoverBaseCAP
)
get_sheet_antiparallel_info()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
StagePreparerCAP
)
get()
(in
SidechainMoverCAP
)
get_sheet_id()
(in
SandwichFragment
)
get()
(in
StructPerturberCMAP
)
get()
(in
SidechainMoverCreatorAP
)
get_shift()
(in
CSTalosIO
)
get()
(in
StructPerturberCMCAP
)
get()
(in
SidechainMoverCreatorCAP
)
get_short_backrub_mover()
(in
CoupledMover
)
get()
(in
StructPerturberCMCreatorAP
)
get()
(in
DetectSymmetryAP
)
get_shortest_among_4()
(in
StrandBundleFeatures
)
get()
(in
StructPerturberCMCreatorCAP
)
get()
(in
DetectSymmetryCAP
)
get_shortest_among_4_vals()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
InterfaceAnalyzerMoverAP
)
get()
(in
DetectSymmetryMoverCreatorAP
)
get_show_extended()
(in
AnchoredDesignMover
)
get()
(in
InterfaceAnalyzerMoverCAP
)
get()
(in
DetectSymmetryMoverCreatorCAP
)
get_side1_nres()
(in
InterfaceAnalyzerMover
)
get()
(in
InterfaceAnalyzerMoverCreatorAP
)
get()
(in
ExtractAsymmetricPoseMoverAP
)
get_side1_score()
(in
InterfaceAnalyzerMover
)
get()
(in
InterfaceAnalyzerMoverCreatorCAP
)
get()
(in
ExtractAsymmetricPoseMoverCAP
)
get_side2_nres()
(in
InterfaceAnalyzerMover
)
get()
(in
InterfaceDataAP
)
get()
(in
ExtractAsymmetricPoseMoverCreatorAP
)
get_side2_score()
(in
InterfaceAnalyzerMover
)
get()
(in
InterfaceDataCAP
)
get()
(in
ExtractAsymmetricPoseMoverCreatorCAP
)
get_sidechain_reference_frame()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
LoopAnalyzerMoverAP
)
get()
(in
ExtractAsymmetricUnitMoverAP
)
get_sidechain_reference_frame_atomids()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
LoopAnalyzerMoverCAP
)
get()
(in
ExtractAsymmetricUnitMoverCAP
)
get_sidechain_reference_frame_atomids_with_downstream()
(in
rosetta.core.pose.motif._core_pose_motif_
)
get()
(in
PackStatMoverAP
)
get()
(in
ExtractAsymmetricUnitMoverCreatorAP
)
get_silent_energies()
(in
SilentStruct
)
get()
(in
PackStatMoverCAP
)
get()
(in
ExtractAsymmetricUnitMoverCreatorCAP
)
get_silent_energy()
(in
SilentStruct
)
get()
(in
PeptideDeriverBasicStreamOutputterAP
)
get()
(in
FaSymDockingSlideTogetherAP
)
get_silent_struct()
(in
SilentStructFactory
)
get()
(in
PeptideDeriverBasicStreamOutputterCAP
)
get()
(in
FaSymDockingSlideTogetherCAP
)
get_silent_struct_in()
(in
SilentStructFactory
)
get()
(in
PeptideDeriverFilterAP
)
get()
(in
NCSResMappingAP
)
get_silent_struct_out()
(in
SilentStructFactory
)
get()
(in
PeptideDeriverFilterCAP
)
get()
(in
NCSResMappingCAP
)
get_silent_struct_type()
(in
SilentFileOptions
)
get()
(in
PeptideDeriverFilterCreatorAP
)
get()
(in
OrderedSequentialSymmetrySliderAP
)
get_simple_node()
(in
SimpleInteractionGraph
)
get()
(in
PeptideDeriverFilterCreatorCAP
)
get()
(in
OrderedSequentialSymmetrySliderCAP
)
get_size()
(in
HPool_RMSD
)
get()
(in
PeptideDeriverMarkdownStreamOutputterAP
)
get()
(in
RandomSymmetrySliderAP
)
get_size()
(in
TorsionSet
)
get()
(in
PeptideDeriverMarkdownStreamOutputterCAP
)
get()
(in
RandomSymmetrySliderCAP
)
get_size()
(in
SandwichFragment
)
get()
(in
PeptideDeriverOutputterAP
)
get()
(in
SequentialSymmetrySliderAP
)
get_size()
(in
StrandFragment
)
get()
(in
PeptideDeriverOutputterCAP
)
get()
(in
SequentialSymmetrySliderCAP
)
get_size()
(in
SmallMol
)
get()
(in
PeptideDeriverOutputterContainerAP
)
get()
(in
SetupForSymmetryMoverAP
)
get_size_sandwich_PK_id()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
PeptideDeriverOutputterContainerCAP
)
get()
(in
SetupForSymmetryMoverCAP
)
get_skip_low_temp_phase()
(in
ShakeStructureMover
)
get()
(in
PeptideDeriverPoseOutputterAP
)
get()
(in
SetupForSymmetryMoverCreatorAP
)
get_slide_axis()
(in
EllipsoidalRandomizationMover
)
get()
(in
PeptideDeriverPoseOutputterCAP
)
get()
(in
SetupForSymmetryMoverCreatorCAP
)
get_slide_info()
(in
SymmData
)
get()
(in
PerResidueInterfaceDataAP
)
get()
(in
SetupNCSMoverAP
)
get_slide_info()
(in
SymmetryInfo
)
get()
(in
PerResidueInterfaceDataCAP
)
get()
(in
SetupNCSMoverCAP
)
get_slide_order()
(in
SymSlideInfo
)
get()
(in
AnchorAP
)
get()
(in
SetupNCSMoverCreatorAP
)
get_slide_threshold()
(in
SymmetrySlider
)
get()
(in
AnchorCAP
)
get()
(in
SetupNCSMoverCreatorCAP
)
get_slide_type()
(in
SymSlideInfo
)
get()
(in
AnchorMoversDataAP
)
get()
(in
SymDockingInitialPerturbationAP
)
get_SlideCriteriaType()
(in
SymSlideInfo
)
get()
(in
AnchorMoversDataCAP
)
get()
(in
SymDockingInitialPerturbationCAP
)
get_SlideCriteriaVal()
(in
SymSlideInfo
)
get()
(in
AnchoredDesignMoverAP
)
get()
(in
SymDockingSlideIntoContactAP
)
get_slope()
(in
LinearPenaltyFunction
)
get()
(in
AnchoredDesignMoverCAP
)
get()
(in
SymDockingSlideIntoContactCAP
)
get_smooth()
(in
FadeInterval
)
get()
(in
AnchoredPerturbMoverAP
)
get()
(in
SymEnergyCutRotamerTrialsMoverAP
)
get_SmoothEnvPairPotential()
(in
ScoringManager
)
get()
(in
AnchoredPerturbMoverCAP
)
get()
(in
SymEnergyCutRotamerTrialsMoverCAP
)
get_sol_secondary_struct()
(in
FullatomRelaxMover
)
get()
(in
AnchoredRefineMoverAP
)
get()
(in
SymMinMoverAP
)
get_solution_picker()
(in
KicMover
)
get()
(in
AnchoredRefineMoverCAP
)
get()
(in
SymMinMoverCAP
)
get_solvation()
(in
RotData
)
get()
(in
Ab_TemplateInfoAP
)
get()
(in
SymMinMoverCreatorAP
)
get_spanfile()
(in
AddMembraneMover
)
get()
(in
Ab_TemplateInfoCAP
)
get()
(in
SymMinMoverCreatorCAP
)
get_spans()
(in
SpanningTopology
)
get()
(in
AntibodyEnumManagerAP
)
get()
(in
SymPackRotamersMoverAP
)
get_sparse_aa_info()
(in
AminoAcidNeighborSparseMatrix_T_float_T
)
get()
(in
AntibodyEnumManagerCAP
)
get()
(in
SymPackRotamersMoverCAP
)
get_sparse_aa_info()
(in
DensePDEdge
)
get()
(in
AntibodyFeaturesAP
)
get()
(in
SymPackRotamersMoverCreatorAP
)
get_sparse_aa_info()
(in
DoubleDensePDEdge
)
get()
(in
AntibodyFeaturesCAP
)
get()
(in
SymPackRotamersMoverCreatorCAP
)
get_sparse_aa_info()
(in
DoubleLazyEdge
)
get()
(in
AntibodyFeaturesCreatorAP
)
get()
(in
SymRotamerTrialsMoverAP
)
get_sparse_aa_info()
(in
FASTEREdge
)
get()
(in
AntibodyFeaturesCreatorCAP
)
get()
(in
SymRotamerTrialsMoverCAP
)
get_sparse_aa_info()
(in
FixedBBEdge
)
get()
(in
AntibodyInfoAP
)
get()
(in
SymRotamerTrialsMoverCreatorAP
)
get_sparse_aa_info()
(in
LazyEdge
)
get()
(in
AntibodyInfoCAP
)
get()
(in
SymRotamerTrialsMoverCreatorCAP
)
get_sparse_aa_info()
(in
LinearMemEdge
)
get()
(in
AntibodyModelerProtocolAP
)
get()
(in
SymShakeStructureMoverAP
)
get_sparse_aa_info()
(in
OnTheFlyEdge
)
get()
(in
AntibodyModelerProtocolCAP
)
get()
(in
SymShakeStructureMoverCAP
)
get_sparse_aa_info()
(in
PDEdge
)
get()
(in
AntibodyNumberingAP
)
get()
(in
SymmetricRMSMoverAP
)
get_sparse_aa_info()
(in
PrecomputedPairEnergiesEdge
)
get()
(in
AntibodyNumberingCAP
)
get()
(in
SymmetricRMSMoverCAP
)
get_sparse_aa_info()
(in
SymmLinearMemEdge
)
get()
(in
AntibodyNumberingParserAP
)
get()
(in
SymmetrySliderAP
)
get_sparse_aa_info()
(in
SymmMinimalistEdge
)
get()
(in
AntibodyNumberingParserCAP
)
get()
(in
SymmetrySliderCAP
)
get_sparse_aa_info()
(in
SymmOnTheFlyEdge
)
get()
(in
CDRsMinPackMinAP
)
get()
(in
TaskAwareSymMinMoverAP
)
get_sparse_aa_info_for_edge()
(in
FixedBBInteractionGraph
)
get()
(in
CDRsMinPackMinCAP
)
get()
(in
TaskAwareSymMinMoverCAP
)
get_sparse_aa_neighbor_info()
(in
LinearMemEdge
)
get()
(in
CloseOneCDRLoopAP
)
get()
(in
TaskAwareSymMinMoverCreatorAP
)
get_sparse_mat_info_for_curr_state()
(in
DoubleLazyNode
)
get()
(in
CloseOneCDRLoopCAP
)
get()
(in
TaskAwareSymMinMoverCreatorCAP
)
get_sparse_mat_info_for_curr_state()
(in
LazyNode
)
get()
(in
FrameWorkAP
)
get()
(in
ANNAP
)
get_sparse_mat_info_for_curr_state()
(in
LinearMemNode
)
get()
(in
FrameWorkCAP
)
get()
(in
ANNCAP
)
get_sparse_mat_info_for_curr_state()
(in
PDNode
)
get()
(in
GraftCDRLoopsProtocolAP
)
get()
(in
CORdataAP
)
get_sparse_mat_info_for_state()
(in
OnTheFlyNode
)
get()
(in
GraftCDRLoopsProtocolCAP
)
get()
(in
CORdataCAP
)
get_sparse_mat_info_for_state()
(in
PDNode
)
get()
(in
GraftOneCDRLoopAP
)
get()
(in
ChemicalShiftEvaluatorAP
)
get_specific_atom_coordinate()
(in
rosetta.protocols.toolbox.rigid_body._protocols_toolbox_rigid_body_
)
get()
(in
GraftOneCDRLoopCAP
)
get()
(in
ChemicalShiftEvaluatorCAP
)
get_sphere_aa()
(in
LigandMotifSearch
)
get()
(in
GraftedStemOptimizerAP
)
get()
(in
ChemicalShiftEvaluatorCreatorAP
)
get_spheres()
(in
SimplePDB
)
get()
(in
GraftedStemOptimizerCAP
)
get()
(in
ChemicalShiftEvaluatorCreatorCAP
)
get_spin_center()
(in
EllipsoidalRandomizationMover
)
get()
(in
H3CterInsertAP
)
get()
(in
GDBAP
)
get_ss()
(in
RotamerRecovery
)
get()
(in
H3CterInsertCAP
)
get()
(in
GDBCAP
)
get_ss_cutoff()
(in
SecondaryStructureWeights
)
get()
(in
H3PerturbCCDAP
)
get()
(in
PDBAP
)
get_ss_lowstrand()
(in
SecondaryStructureWeights
)
get()
(in
H3PerturbCCDCAP
)
get()
(in
PDBCAP
)
get_ss_names()
(in
SilentStructFactory
)
get()
(in
H3RefineCCDAP
)
get()
(in
RingDataAP
)
get_ss_segments()
(in
SmotifFeatures
)
get()
(in
H3RefineCCDCAP
)
get()
(in
RingDataCAP
)
get_ss_type()
(in
SecondaryStructurePool
)
get()
(in
LHRepulsiveRampAP
)
get()
(in
SpartaAP
)
get_ssdep_weight()
(in
rosetta.core.scoring.hbonds._core_scoring_hbonds_
)
get()
(in
LHRepulsiveRampCAP
)
get()
(in
SpartaCAP
)
get_sstream()
(in
Inline_File_Provider
)
get()
(in
ModelCDRH3AP
)
get()
(in
SS_predictorAP
)
get_stability_metric()
(in
GasteigerAtomTypeData
)
get()
(in
ModelCDRH3CAP
)
get()
(in
SS_predictorCAP
)
get_start()
(in
CubicSpline
)
get()
(in
PDBLandmarkAP
)
get()
(in
StepWiseSampleAndScreenAP
)
get_start()
(in
SandwichFragment
)
get()
(in
PDBLandmarkCAP
)
get()
(in
StepWiseSampleAndScreenCAP
)
get_start()
(in
StrandFragment
)
get()
(in
ParatopeMetric_T_double_TAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_start_end_res_num_in_the_longest_strand()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
ParatopeMetric_T_double_TCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_start_positions()
(in
HelixNCapperMover
)
get()
(in
ParatopeMetric_T_long_int_TAP
)
get()
(in
StepWiseProteinMinimizerAP
)
get_start_res()
(in
LoopHashSampler
)
get()
(in
ParatopeMetric_T_long_int_TCAP
)
get()
(in
StepWiseProteinMinimizerCAP
)
get_start_res()
(in
ReturnSidechainMover
)
get()
(in
RefineBetaBarrelAP
)
get()
(in
StepWiseProteinPoseSetupAP
)
get_start_with_current()
(in
SimAnnealerBase
)
get()
(in
RefineBetaBarrelCAP
)
get()
(in
StepWiseProteinPoseSetupCAP
)
get_starting_res_for_connecting_strands()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
RefineOneCDRLoopAP
)
get()
(in
Cluster_MemberAP
)
get_state_ind_for_this_aa_type()
(in
SparseMatrixIndex
)
get()
(in
RefineOneCDRLoopCAP
)
get()
(in
Cluster_MemberCAP
)
get_state_offset_for_aatype()
(in
OnTheFlyNode
)
get()
(in
RefineOneCDRLoopCentroidAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_state_offset_for_bb()
(in
FlexbbNode
)
get()
(in
RefineOneCDRLoopCentroidCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_state_offset_for_restype_group()
(in
SymmOnTheFlyNode
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
SlicedPoseWorkingParametersAP
)
get_states_on_curr_bb()
(in
FlexbbNode
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
SlicedPoseWorkingParametersCAP
)
get_static_int()
(in
PyExitCallback
)
get()
(in
BasicCDRClusterSetAP
)
get()
(in
StepWiseRNA_ClustererAP
)
get_static_string()
(in
PyExitCallback
)
get()
(in
BasicCDRClusterSetCAP
)
get()
(in
StepWiseRNA_ClustererCAP
)
get_static_string_const()
(in
PyExitCallback
)
get()
(in
CDRClusterAP
)
get()
(in
StepWiseRNA_PoseSelectionAP
)
get_std_dev()
(in
RotData
)
get()
(in
CDRClusterCAP
)
get()
(in
StepWiseRNA_PoseSelectionCAP
)
get_stem_movemap()
(in
GraftedStemOptimizer
)
get()
(in
CDRClusterEnumManagerAP
)
get()
(in
StepWiseRNA_PoseSetupAP
)
get_stem_residues()
(in
RNA_StructureParameters
)
get()
(in
CDRClusterEnumManagerCAP
)
get()
(in
StepWiseRNA_PoseSetupCAP
)
get_stem_taskfactory()
(in
GraftedStemOptimizer
)
get()
(in
CDRClusterFeaturesAP
)
get()
(in
StepWiseWorkingParametersSetupAP
)
get_stop_res()
(in
LoopHashSampler
)
get()
(in
CDRClusterFeaturesCAP
)
get()
(in
StepWiseWorkingParametersSetupCAP
)
get_str_str_data()
(in
MolFileIOMolecule
)
get()
(in
CDRClusterFeaturesCreatorAP
)
get()
(in
ProteinAtrRepScreenerAP
)
get_strand_dist_cutoff()
(in
SecondaryStructureWeights
)
get()
(in
CDRClusterFeaturesCreatorCAP
)
get()
(in
ProteinAtrRepScreenerCAP
)
get_strand_from_bss_id()
(in
StrandBundleFeatures
)
get()
(in
CDRClusterMatcherAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_strand_id()
(in
SandwichFragment
)
get()
(in
CDRClusterMatcherCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_strand_pairs()
(in
StrandBundleFeatures
)
get()
(in
CDRClusterSetAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_strand_pairs()
(in
FoldTreeHybridize
)
get()
(in
CDRClusterSetCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_stretch_strand_dist_cutoff()
(in
SecondaryStructureWeights
)
get()
(in
ClusterDataAP
)
get()
(in
StepWiseConnectionSamplerAP
)
get_strict_loops()
(in
IndependentLoopMover
)
get()
(in
ClusterDataCAP
)
get()
(in
StepWiseConnectionSamplerCAP
)
get_stride()
(in
TrajectoryReportToDB
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
StepWiseMinimizerAP
)
get_string()
(in
PDBLandmark
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
StepWiseMinimizerCAP
)
get_string()
(in
rosetta.utility.json_spirit._utility_json_spirit_
)
get()
(in
CDRDihedralConstraintMoverAP
)
get()
(in
StepWiseModelerAP
)
get_string_from_variant()
(in
ResidueProperties
)
get()
(in
CDRDihedralConstraintMoverCAP
)
get()
(in
StepWiseModelerCAP
)
get_string_option()
(in
rosetta.basic._basic_
)
get()
(in
CDRDihedralConstraintMoverCreatorAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_string_option()
(in
rosetta.basic.options._basic_options_
)
get()
(in
CDRDihedralConstraintMoverCreatorCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_string_or_empty()
(in
rosetta.utility.json_spirit._utility_json_spirit_
)
get()
(in
ParatopeEpitopeSiteConstraintMoverAP
)
get()
(in
StepWiseClustererAP
)
get_string_property()
(in
ResidueType
)
get()
(in
ParatopeEpitopeSiteConstraintMoverCAP
)
get()
(in
StepWiseClustererCAP
)
get_string_real_pairs()
(in
Job
)
get()
(in
ParatopeEpitopeSiteConstraintMoverCreatorAP
)
get()
(in
StepWiseLegacyClustererAP
)
get_string_string_pairs()
(in
Job
)
get()
(in
ParatopeEpitopeSiteConstraintMoverCreatorCAP
)
get()
(in
StepWiseLegacyClustererCAP
)
get_string_value()
(in
SilentStruct
)
get()
(in
ParatopeSiteConstraintMoverAP
)
get()
(in
StepWiseLegacyClustererSilentBasedAP
)
get_string_vector_option()
(in
rosetta.basic._basic_
)
get()
(in
ParatopeSiteConstraintMoverCAP
)
get()
(in
StepWiseLegacyClustererSilentBasedCAP
)
get_string_vector_option()
(in
rosetta.basic.options._basic_options_
)
get()
(in
ParatopeSiteConstraintMoverCreatorAP
)
get()
(in
StepWisePoseAlignerAP
)
get_strings()
(in
Job
)
get()
(in
ParatopeSiteConstraintMoverCreatorCAP
)
get()
(in
StepWisePoseAlignerCAP
)
get_struct()
(in
SilentStructStore
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
StepWiseBasicModelerOptionsAP
)
get_struct_id()
(in
StructureFeatures
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
StepWiseBasicModelerOptionsCAP
)
get_struct_id1()
(in
RRReporterSQLite
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
StepWiseModelerOptionsAP
)
get_struct_id_with_highest_score_from_job_data()
(in
rosetta.protocols.features._protocols_features_
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
StepWiseModelerOptionsCAP
)
get_struct_id_with_highest_score_from_score_data()
(in
rosetta.protocols.features._protocols_features_
)
get()
(in
AntibodyDesignModelerAP
)
get()
(in
StepWiseProteinModelerOptionsAP
)
get_struct_id_with_lowest_score_from_job_data()
(in
rosetta.protocols.features._protocols_features_
)
get()
(in
AntibodyDesignModelerCAP
)
get()
(in
StepWiseProteinModelerOptionsCAP
)
get_struct_id_with_lowest_score_from_score_data()
(in
rosetta.protocols.features._protocols_features_
)
get()
(in
AntibodyDesignMoverAP
)
get()
(in
StepWiseRNA_ModelerOptionsAP
)
get_struct_id_with_nth_lowest_score_from_job_data()
(in
rosetta.protocols.features._protocols_features_
)
get()
(in
AntibodyDesignMoverCAP
)
get()
(in
StepWiseRNA_ModelerOptionsCAP
)
get_struct_id_with_nth_lowest_score_from_score_data()
(in
rosetta.protocols.features._protocols_features_
)
get()
(in
AntibodyDesignMoverCreatorAP
)
get()
(in
SideChainCopierAP
)
get_struct_random()
(in
SilentStructStore
)
get()
(in
AntibodyDesignMoverCreatorCAP
)
get()
(in
SideChainCopierCAP
)
get_structure()
(in
SilentFileData
)
get()
(in
AntibodyDesignProtocolAP
)
get()
(in
StepWiseMasterPackerAP
)
get_structure_input_tag()
(in
ReportToDB
)
get()
(in
AntibodyDesignProtocolCAP
)
get()
(in
StepWiseMasterPackerCAP
)
get_structure_tag()
(in
ReportToDB
)
get()
(in
AntibodyDesignProtocolCreatorAP
)
get()
(in
StepWisePackerAP
)
get_stub()
(in
Atom
)
get()
(in
AntibodyDesignProtocolCreatorCAP
)
get()
(in
StepWisePackerCAP
)
get_stub()
(in
Atom_
)
get()
(in
AntibodySeqDesignTFCreatorAP
)
get()
(in
PolarHydrogenPackerAP
)
get_stub()
(in
HotspotStubSet
)
get()
(in
AntibodySeqDesignTFCreatorCAP
)
get()
(in
PolarHydrogenPackerCAP
)
get_stub()
(in
RigidBodyStepWiseSampler
)
get()
(in
CDRGraftDesignOptionsAP
)
get()
(in
PrecomputedLibraryMoverAP
)
get_stub()
(in
RigidBodyStepWiseSamplerWithResidueAlternatives
)
get()
(in
CDRGraftDesignOptionsCAP
)
get()
(in
PrecomputedLibraryMoverCAP
)
get_stub()
(in
RigidBodyStepWiseSamplerWithResidueList
)
get()
(in
CDRGraftDesignOptionsParserAP
)
get()
(in
InputStreamWithResidueInfoAP
)
get_stub1()
(in
ICoorOrbitalData
)
get()
(in
CDRGraftDesignOptionsParserCAP
)
get()
(in
InputStreamWithResidueInfoCAP
)
get_stub2()
(in
ICoorOrbitalData
)
get()
(in
CDRSeqDesignOptionsAP
)
get()
(in
MainChainTorsionSetAP
)
get_stub3()
(in
ICoorOrbitalData
)
get()
(in
CDRSeqDesignOptionsCAP
)
get()
(in
MainChainTorsionSetCAP
)
get_stub_scorefxn()
(in
PlacementAuctionMover
)
get()
(in
CDRSeqDesignOptionsParserAP
)
get()
(in
StepWiseProteinBackboneSamplerAP
)
get_stub_transform()
(in
Conformation
)
get()
(in
CDRSeqDesignOptionsParserCAP
)
get()
(in
StepWiseProteinBackboneSamplerCAP
)
get_stub_transform()
(in
AtomTree
)
get()
(in
MutantPositionAP
)
get()
(in
ProteinAtrRepCheckerAP
)
get_sub_score()
(in
ScoreFunction
)
get()
(in
MutantPositionCAP
)
get()
(in
ProteinAtrRepCheckerCAP
)
get_sub_score_exclude_res()
(in
ScoreFunction
)
get()
(in
MutateFrameworkForClusterAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_subbin_type_from_name()
(in
BinTransitionData
)
get()
(in
MutateFrameworkForClusterCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_subbin_type_name()
(in
BinTransitionData
)
get()
(in
MutateFrameworkForClusterCreatorAP
)
get()
(in
StepWiseProteinCCD_CloserAP
)
get_subcluster()
(in
KClusterElement
)
get()
(in
MutateFrameworkForClusterCreatorCAP
)
get()
(in
StepWiseProteinCCD_CloserCAP
)
get_submotif_moves()
(in
SubMotifLibrary
)
get()
(in
PDBNumberingAP
)
get()
(in
StepWiseProteinCCD_MultiPoseCloserAP
)
get_subpose()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
PDBNumberingCAP
)
get()
(in
StepWiseProteinCCD_MultiPoseCloserCAP
)
get_subset()
(in
MembraneTopology
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
StepWiseProteinKIC_LoopBridgerAP
)
get_subunit_name_to_component()
(in
SymmData
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
StepWiseProteinKIC_LoopBridgerCAP
)
get_subunit_name_to_component()
(in
SymmetryInfo
)
get()
(in
AddCDRProfileSetsOperationAP
)
get()
(in
Combine_Tags_InfoAP
)
get_subunit_name_to_component()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
AddCDRProfileSetsOperationCAP
)
get()
(in
Combine_Tags_InfoCAP
)
get_subunit_num_to_virt_id()
(in
SymmData
)
get()
(in
AddCDRProfilesOperationAP
)
get()
(in
Filterer_CountAP
)
get_subunits()
(in
SymmData
)
get()
(in
AddCDRProfilesOperationCAP
)
get()
(in
Filterer_CountCAP
)
get_sugar_centroid()
(in
rosetta.protocols.farna._protocols_farna_
)
get()
(in
DisableAntibodyRegionOperationAP
)
get()
(in
InternalWorkingResidueParameterAP
)
get_sugar_env_score()
(in
RNA_DataBackboneEnergy
)
get()
(in
DisableAntibodyRegionOperationCAP
)
get()
(in
InternalWorkingResidueParameterCAP
)
get_sum_water_weight_grid()
(in
WaterWeightGridSet
)
get()
(in
DisableCDRsOperationAP
)
get()
(in
Jump_pointAP
)
get_super_secret_fixed_interface_mode()
(in
AnchorMoversData
)
get()
(in
DisableCDRsOperationCAP
)
get()
(in
Jump_pointCAP
)
get_superposition_transformation()
(in
rosetta.protocols.hybridization._protocols_hybridization_
)
get()
(in
RestrictToCDRsAndNeighborsAP
)
get()
(in
Residue_infoAP
)
get_surf_tot()
(in
rosetta.core.scoring.packing._core_scoring_packing_
)
get()
(in
RestrictToCDRsAndNeighborsCAP
)
get()
(in
Residue_infoCAP
)
get_surf_vol()
(in
rosetta.core.scoring.packing._core_scoring_packing_
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_surf_vol_deriv()
(in
rosetta.core.scoring.packing._core_scoring_packing_
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_surface_area()
(in
LeeRichards
)
get()
(in
AntibodyAP
)
get()
(in
StepWiseRNA_CombineLongLoopFiltererAP
)
get_surface_esp()
(in
NonPlaidFingerprint
)
get()
(in
AntibodyCAP
)
get()
(in
StepWiseRNA_CombineLongLoopFiltererCAP
)
get_surrounding_O2prime_hydrogen()
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
get()
(in
AntibodyModelerAP
)
get()
(in
StepWiseRNA_CountStructAP
)
get_svd_solution()
(in
SVD_Solver
)
get()
(in
AntibodyModelerCAP
)
get()
(in
StepWiseRNA_CountStructCAP
)
get_svm_nodes()
(in
NMerSVMEnergy
)
get()
(in
CDRH3ModelerAP
)
get()
(in
Torsion_InfoAP
)
get_sw_can_by_sh_id()
(in
SandwichFragment
)
get()
(in
CDRH3ModelerCAP
)
get()
(in
Torsion_InfoCAP
)
get_sym_aware_jump_num()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
CloseOneMoverAP
)
get()
(in
output_data_structAP
)
get_sym_dof_names()
(in
SymDofMoverSampler
)
get()
(in
CloseOneMoverCAP
)
get()
(in
output_data_structCAP
)
get_symbols()
(in
ABEGOManager
)
get()
(in
GraftMoverAP
)
get()
(in
BulgeApplyMoverAP
)
get_symdof_subunits()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
GraftMoverCAP
)
get()
(in
BulgeApplyMoverCAP
)
get_symm_axis()
(in
rosetta.core.pose.symmetry._core_pose_symmetry_
)
get()
(in
GraftOneMoverAP
)
get()
(in
BulgeUnApplyMoverAP
)
get_symm_data()
(in
SymmetryClaim
)
get()
(in
GraftOneMoverCAP
)
get()
(in
BulgeUnApplyMoverCAP
)
get_symmetry_name()
(in
SymmData
)
get()
(in
LoopRlxMoverAP
)
get()
(in
Atom_BinAP
)
get_symmetry_type()
(in
SymmData
)
get()
(in
LoopRlxMoverCAP
)
get()
(in
Atom_BinCAP
)
get_symmin_ig_owner()
(in
SymmMinimalistNode
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
RNA_AtrRepCheckerAP
)
get_symmlinmem_ig_owner()
(in
SymmLinearMemEdge
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
RNA_AtrRepCheckerCAP
)
get_symmlinmem_ig_owner()
(in
SymmLinearMemNode
)
get()
(in
BackrubMoverAP
)
get()
(in
RNA_BaseCentroidCheckerAP
)
get_symmlinmem_node()
(in
SymmLinearMemEdge
)
get()
(in
BackrubMoverCAP
)
get()
(in
RNA_BaseCentroidCheckerCAP
)
get_symmMap()
(in
ElectronDensity
)
get()
(in
BackrubMoverCreatorAP
)
get()
(in
RNA_ChainClosableGeometryCheckerAP
)
get_table_size()
(in
AminoAcidNeighborSparseMatrix_T_float_T
)
get()
(in
BackrubMoverCreatorCAP
)
get()
(in
RNA_ChainClosableGeometryCheckerCAP
)
get_tag()
(in
rosetta.core.io.rna._core_io_rna_
)
get()
(in
BackrubProtocolAP
)
get()
(in
RNA_ChainClosureCheckerAP
)
get_tag()
(in
Pool_RMSD
)
get()
(in
BackrubProtocolCAP
)
get()
(in
RNA_ChainClosureCheckerCAP
)
get_tag()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
BackrubProtocolCreatorAP
)
get()
(in
RNA_VDW_BinCheckerAP
)
get_tag()
(in
KClusterData
)
get()
(in
BackrubProtocolCreatorCAP
)
get()
(in
RNA_VDW_BinCheckerCAP
)
get_tag_list()
(in
GatherPosesMover
)
get()
(in
BackrubSegmentAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_tag_score_map()
(in
AtomTreeDiff
)
get()
(in
BackrubSegmentCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_tags()
(in
rosetta.core.io.rna._core_io_rna_
)
get()
(in
BackrubSidechainMoverAP
)
get()
(in
VDW_RepScreeninfoAP
)
get_target_position_map_make_dna_mutations()
(in
rosetta.protocols.motifs._protocols_motifs_
)
get()
(in
BackrubSidechainMoverCAP
)
get()
(in
VDW_RepScreeninfoCAP
)
get_target_positions_make_dna_mutations()
(in
rosetta.protocols.motifs._protocols_motifs_
)
get()
(in
BackrubSidechainMoverCreatorAP
)
get()
(in
RNA_HelixAssemblerAP
)
get_targetconformers_user()
(in
rosetta.protocols.motifs._protocols_motifs_
)
get()
(in
BackrubSidechainMoverCreatorCAP
)
get()
(in
RNA_HelixAssemblerCAP
)
get_targeted_sequence()
(in
DnaInterfacePacker
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
O2PrimePackerAP
)
get_task()
(in
AnchorMoversData
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
O2PrimePackerCAP
)
get_task()
(in
STMStoredTask
)
get()
(in
BranchAngleOptimizerAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_task_factory()
(in
AnchorMoversData
)
get()
(in
BranchAngleOptimizerCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_task_factory()
(in
LoopModeler
)
get()
(in
BranchCoef1AP
)
get()
(in
MultiPhosphateSamplerAP
)
get_task_factory()
(in
RepackingRefiner
)
get()
(in
BranchCoef1CAP
)
get()
(in
MultiPhosphateSamplerCAP
)
get_task_factory()
(in
RotamerTrialsRefiner
)
get()
(in
BranchCoef2AP
)
get()
(in
PhosphateMoveAP
)
get_task_factory()
(in
LoopMover_Refine_Backrub
)
get()
(in
BranchCoef2CAP
)
get()
(in
PhosphateMoveCAP
)
get_task_factory()
(in
LoopMover_Refine_CCD
)
get()
(in
BranchParam1AP
)
get()
(in
PhosphateMoverAP
)
get_task_factory()
(in
LoopMover_Refine_KIC
)
get()
(in
BranchParam1CAP
)
get()
(in
PhosphateMoverCAP
)
get_task_factory()
(in
RelaxProtocolBase
)
get()
(in
BranchParam2AP
)
get()
(in
BaseBinAP
)
get_task_operations()
(in
rosetta.protocols.rosetta_scripts._protocols_rosetta_scripts_
)
get()
(in
BranchParam2CAP
)
get()
(in
BaseBinCAP
)
get_TaskFactory_AllCDRs()
(in
AntibodyInfo
)
get()
(in
AsyncMPITemperingBaseAP
)
get()
(in
compare_base_binAP
)
get_TaskFactory_OneCDR()
(in
AntibodyInfo
)
get()
(in
AsyncMPITemperingBaseCAP
)
get()
(in
compare_base_binCAP
)
get_temp()
(in
CanonicalSamplingMover
)
get()
(in
BiasEnergyAP
)
get()
(in
compare_int_pairAP
)
get_temp_cycles()
(in
LoopProtocol
)
get()
(in
BiasEnergyCAP
)
get()
(in
compare_int_pairCAP
)
get_temperature()
(in
SimAnnealerBase
)
get()
(in
BiasedMonteCarloAP
)
get()
(in
SugarInstantiateMoverAP
)
get_temperature()
(in
ConformerSwitchMover
)
get()
(in
BiasedMonteCarloCAP
)
get()
(in
SugarInstantiateMoverCAP
)
get_temperature()
(in
MakeRotLibOptionsData
)
get()
(in
CanonicalSamplingMoverAP
)
get()
(in
SugarModelingAP
)
get_temperature()
(in
Thermostat
)
get()
(in
CanonicalSamplingMoverCAP
)
get()
(in
SugarModelingCAP
)
get_temperature()
(in
BoltzmannRotamerMover
)
get()
(in
DbTrajectoryReaderAP
)
get()
(in
SugarVirtualizeMoverAP
)
get_temperature()
(in
CoupledMover
)
get()
(in
DbTrajectoryReaderCAP
)
get()
(in
SugarVirtualizeMoverCAP
)
get_template()
(in
Templates
)
get()
(in
DbTrajectoryRecorderAP
)
get()
(in
VirtualSugarJustInTimeInstantiatorAP
)
get_template_atoms_at_pos()
(in
EnzCstTemplateRes
)
get()
(in
DbTrajectoryRecorderCAP
)
get()
(in
VirtualSugarJustInTimeInstantiatorCAP
)
get_tenA_neighbor_residues()
(in
rosetta.protocols.loops._protocols_loops_
)
get()
(in
DbTrajectoryRecorderCreatorAP
)
get()
(in
VirtualSugarSamplerAP
)
get_termini_from_pose()
(in
rosetta.protocols.sic_dock._protocols_sic_dock_
)
get()
(in
DbTrajectoryRecorderCreatorCAP
)
get()
(in
VirtualSugarSamplerCAP
)
get_testing_phase()
(in
ShakeStructureMover
)
get()
(in
FixedTemperatureControllerAP
)
get()
(in
VirtualSugarSamplerFromStringListAP
)
get_third_atom()
(in
FourAtomsConstraintData
)
get()
(in
FixedTemperatureControllerCAP
)
get()
(in
VirtualSugarSamplerFromStringListCAP
)
get_third_offset()
(in
FourAtomsConstraintData
)
get()
(in
HamiltonianExchangeAP
)
get()
(in
StepWiseBasicWorkingParametersAP
)
get_this_filter_type_name()
(in
GeneralizedKICfilter
)
get()
(in
HamiltonianExchangeCAP
)
get()
(in
StepWiseBasicWorkingParametersCAP
)
get_three_letter_name()
(in
rosetta.protocols.stepwise.modeler.rna._protocols_stepwise_modeler_rna_
)
get()
(in
HamiltonianExchangeCreatorAP
)
get()
(in
StepWiseWorkingParametersAP
)
get_threshold()
(in
GreedyKCenter
)
get()
(in
HamiltonianExchangeCreatorCAP
)
get()
(in
StepWiseWorkingParametersCAP
)
get_threshold()
(in
KCluster
)
get()
(in
MetricRecorderAP
)
get()
(in
StepWiseMonteCarloAP
)
get_threshold()
(in
KMedoid
)
get()
(in
MetricRecorderCAP
)
get()
(in
StepWiseMonteCarloCAP
)
get_time()
(in
rosetta.protocols.wum._protocols_wum_
)
get()
(in
MetricRecorderCreatorAP
)
get()
(in
AddMoverAP
)
get_TMscore()
(in
TMscore
)
get()
(in
MetricRecorderCreatorCAP
)
get()
(in
AddMoverCAP
)
get_token()
(in
rosetta.core.pack.task._core_pack_task_
)
get()
(in
MetropolisHastingsMoverAP
)
get()
(in
AddOrDeleteMoverAP
)
get_tolerance()
(in
FaDockingSlideIntoContact
)
get()
(in
MetropolisHastingsMoverCAP
)
get()
(in
AddOrDeleteMoverCAP
)
get_top_designs()
(in
AntibodyDesignMover
)
get()
(in
MetropolisHastingsMoverCreatorAP
)
get()
(in
AttachmentAP
)
get_torID()
(in
NormalMode
)
get()
(in
MetropolisHastingsMoverCreatorCAP
)
get()
(in
AttachmentCAP
)
get_torsion()
(in
TorsionFragment
)
get()
(in
MultiTemperatureTrialCounterAP
)
get()
(in
DeleteMoverAP
)
get_torsion_angle_atom_ids()
(in
Conformation
)
get()
(in
MultiTemperatureTrialCounterCAP
)
get()
(in
DeleteMoverCAP
)
get_torsion_bin()
(in
rosetta.core.conformation._core_conformation_
)
get()
(in
PDBTrajectoryRecorderAP
)
get()
(in
FromScratchMoverAP
)
get_torsion_ids()
(in
RNA_SuitePotential
)
get()
(in
PDBTrajectoryRecorderCAP
)
get()
(in
FromScratchMoverCAP
)
get_TorsionID()
(in
CartesianMinimizerMap
)
get()
(in
PDBTrajectoryRecorderCreatorAP
)
get()
(in
ResampleMoverAP
)
get_total_base_axis_score()
(in
RNA_FilteredBaseBaseInfo
)
get()
(in
PDBTrajectoryRecorderCreatorCAP
)
get()
(in
ResampleMoverCAP
)
get_total_base_pair_score()
(in
RNA_FilteredBaseBaseInfo
)
get()
(in
ParallelTemperingAP
)
get()
(in
StepWiseMasterMoverAP
)
get_total_base_stack_axis_score()
(in
RNA_FilteredBaseBaseInfo
)
get()
(in
ParallelTemperingCAP
)
get()
(in
StepWiseMasterMoverCAP
)
get_total_base_stack_score()
(in
RNA_FilteredBaseBaseInfo
)
get()
(in
ParallelTemperingCreatorAP
)
get()
(in
StepWiseMoveAP
)
get_total_base_stagger_score()
(in
RNA_FilteredBaseBaseInfo
)
get()
(in
ParallelTemperingCreatorCAP
)
get()
(in
StepWiseMoveCAP
)
get_total_dots()
(in
DotSphere
)
get()
(in
ProgressBarObserverAP
)
get()
(in
StepWiseMoveSelectorAP
)
get_total_energy_in_curr_state_assignment_for_all_states()
(in
FASTERNode
)
get()
(in
ProgressBarObserverCAP
)
get()
(in
StepWiseMoveSelectorCAP
)
get_total_exp_chemical_shift_data_points()
(in
RNA_ChemicalShiftPotential
)
get()
(in
ProgressBarObserverCreatorAP
)
get()
(in
TransientCutpointHandlerAP
)
get_total_frames()
(in
WeightedFragmentSmoothTrialMover
)
get()
(in
ProgressBarObserverCreatorCAP
)
get()
(in
TransientCutpointHandlerCAP
)
get_total_frames()
(in
WeightedFragmentTrialMover
)
get()
(in
SidechainMetropolisHastingsMoverAP
)
get()
(in
StepWiseMonteCarloOptionsAP
)
get_total_Hbond_E()
(in
InterfaceAnalyzerMover
)
get()
(in
SidechainMetropolisHastingsMoverCAP
)
get()
(in
StepWiseMonteCarloOptionsCAP
)
get_total_hsasa()
(in
SasaCalc
)
get()
(in
SidechainMetropolisHastingsMoverCreatorAP
)
get()
(in
RNA_AddDeleteMonteCarloAP
)
get_total_hsasa_bb()
(in
SasaCalc
)
get()
(in
SidechainMetropolisHastingsMoverCreatorCAP
)
get()
(in
RNA_AddDeleteMonteCarloCAP
)
get_total_hsasa_sc()
(in
SasaCalc
)
get()
(in
SilentTrajectoryRecorderAP
)
get()
(in
RNA_O2PrimeMoverAP
)
get_total_mutation_sets()
(in
MutationSetDesignOperation
)
get()
(in
SilentTrajectoryRecorderCAP
)
get()
(in
RNA_O2PrimeMoverCAP
)
get_total_num_CDRs()
(in
AntibodyInfo
)
get()
(in
SilentTrajectoryRecorderCreatorAP
)
get()
(in
RNA_TorsionMoverAP
)
get_total_rel_hsasa()
(in
SasaCalc
)
get()
(in
SilentTrajectoryRecorderCreatorCAP
)
get()
(in
RNA_TorsionMoverCAP
)
get_total_sasa()
(in
SasaCalc
)
get()
(in
SimulatedTemperingAP
)
get()
(in
SubMotifLibraryAP
)
get_total_sasa_bb()
(in
SasaCalc
)
get()
(in
SimulatedTemperingCAP
)
get()
(in
SubMotifLibraryCAP
)
get_total_sasa_sc()
(in
SasaCalc
)
get()
(in
SimulatedTemperingCreatorAP
)
get()
(in
StepWiseBasicOptionsAP
)
get_total_score()
(in
LoopAnalyzerMover
)
get()
(in
SimulatedTemperingCreatorCAP
)
get()
(in
StepWiseBasicOptionsCAP
)
get_totalE()
(in
DoubleLazyNode
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
JumpStepWiseSamplerAP
)
get_totalE()
(in
LazyNode
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
JumpStepWiseSamplerCAP
)
get_totalE()
(in
LinearMemNode
)
get()
(in
TemperatureControllerAP
)
get()
(in
MC_CombAP
)
get_totalE()
(in
SymmLinearMemNode
)
get()
(in
TemperatureControllerCAP
)
get()
(in
MC_CombCAP
)
get_totalE()
(in
SymmMinimalistNode
)
get()
(in
TemperingBaseAP
)
get()
(in
MC_OneTorsionAP
)
get_touched_res()
(in
rosetta.protocols.mpi_refinement._protocols_mpi_refinement_
)
get()
(in
TemperingBaseCAP
)
get()
(in
MC_OneTorsionCAP
)
get_trans_mag()
(in
RigidBodyPerturbMover
)
get()
(in
ThermodynamicMoverAP
)
get()
(in
MC_StepWiseSamplerAP
)
get_trans_magnitude()
(in
DockingHighResLegacy
)
get()
(in
ThermodynamicMoverCAP
)
get()
(in
MC_StepWiseSamplerCAP
)
get_transformation()
(in
SymmetricConformation
)
get()
(in
ThermodynamicObserverAP
)
get()
(in
NoOpStepWiseSamplerAP
)
get_translation()
(in
Jump
)
get()
(in
ThermodynamicObserverCAP
)
get()
(in
NoOpStepWiseSamplerCAP
)
get_translation()
(in
RT
)
get()
(in
TrajectoryRecorderAP
)
get()
(in
StepWiseSamplerAnyAP
)
get_translation_magnitude()
(in
CoupledMover
)
get()
(in
TrajectoryRecorderCAP
)
get()
(in
StepWiseSamplerAnyCAP
)
get_translation_matrix()
(in
SymmData
)
get()
(in
TrialCounterObserverAP
)
get()
(in
StepWiseSamplerBaseAP
)
get_tree()
(in
rosetta.protocols.stepwise.setup._protocols_stepwise_setup_
)
get()
(in
TrialCounterObserverCAP
)
get()
(in
StepWiseSamplerBaseCAP
)
get_trie()
(in
RotamerSetBase
)
get()
(in
TrialCounterObserverCreatorAP
)
get()
(in
StepWiseSamplerCombAP
)
get_trie()
(in
RotamerSet
)
get()
(in
TrialCounterObserverCreatorCAP
)
get()
(in
StepWiseSamplerCombCAP
)
get_trie()
(in
RotamerSet_
)
get()
(in
WTEBiasEnergyAP
)
get()
(in
StepWiseSamplerOneTorsionAP
)
get_trie()
(in
RotamerSubset
)
get()
(in
WTEBiasEnergyCAP
)
get()
(in
StepWiseSamplerOneTorsionCAP
)
get_trie()
(in
SymmetricRotamerSet_
)
get()
(in
DataBufferAP
)
get()
(in
StepWiseSamplerOneValueAP
)
get_trie()
(in
FlexbbRotamerSet
)
get()
(in
DataBufferCAP
)
get()
(in
StepWiseSamplerOneValueCAP
)
get_tuples()
(in
CSTalosIO
)
get()
(in
EXCN_Heat_ConvergedAP
)
get()
(in
StepWiseSamplerOneValueCombAP
)
get_twist()
(in
RotData
)
get()
(in
EXCN_Heat_ConvergedCAP
)
get()
(in
StepWiseSamplerOneValueCombCAP
)
get_two_body_energies_for_relaxed_states()
(in
FASTEREdge
)
get()
(in
EXCN_Pool_ConvergedAP
)
get()
(in
StepWiseSamplerSizedAP
)
get_two_body_energy()
(in
DensePDEdge
)
get()
(in
EXCN_Pool_ConvergedCAP
)
get()
(in
StepWiseSamplerSizedAnyAP
)
get_two_body_energy()
(in
DoubleDensePDEdge
)
get()
(in
HPool_RMSDAP
)
get()
(in
StepWiseSamplerSizedAnyCAP
)
get_two_body_energy()
(in
DoubleLazyEdge
)
get()
(in
HPool_RMSDCAP
)
get()
(in
StepWiseSamplerSizedCAP
)
get_two_body_energy()
(in
FASTEREdge
)
get()
(in
Heat_ConvergenceCheckAP
)
get()
(in
StepWiseSamplerSizedCombAP
)
get_two_body_energy()
(in
FixedBBEdge
)
get()
(in
Heat_ConvergenceCheckCAP
)
get()
(in
StepWiseSamplerSizedCombCAP
)
get_two_body_energy()
(in
LazyEdge
)
get()
(in
HierarchicalLevelAP
)
get()
(in
CopyDofStepWiseSamplerAP
)
get_two_body_energy()
(in
LinearMemEdge
)
get()
(in
HierarchicalLevelCAP
)
get()
(in
CopyDofStepWiseSamplerCAP
)
get_two_body_energy()
(in
OnTheFlyEdge
)
get()
(in
PoolDataAP
)
get()
(in
ResidueAlternativeSetAP
)
get_two_body_energy()
(in
PDEdge
)
get()
(in
PoolDataCAP
)
get()
(in
ResidueAlternativeSetCAP
)
get_two_body_energy()
(in
PrecomputedPairEnergiesEdge
)
get()
(in
Pool_ConvergenceCheckAP
)
get()
(in
ResidueAlternativeStepWiseSamplerAP
)
get_two_body_energy()
(in
SymmLinearMemEdge
)
get()
(in
Pool_ConvergenceCheckCAP
)
get()
(in
ResidueAlternativeStepWiseSamplerCAP
)
get_two_body_energy()
(in
SymmMinimalistEdge
)
get()
(in
Pool_EvaluatorAP
)
get()
(in
ResidueAlternativeStepWiseSamplerCombAP
)
get_two_body_energy()
(in
SymmOnTheFlyEdge
)
get()
(in
Pool_EvaluatorCAP
)
get()
(in
ResidueAlternativeStepWiseSamplerCombCAP
)
get_two_body_energy_for_edge()
(in
FixedBBInteractionGraph
)
get()
(in
Pool_RMSD
)
get()
(in
ResidueListStepWiseSamplerAP
)
get_two_body_energy_smi()
(in
DoubleLazyEdge
)
get()
(in
Pool_RMSDAP
)
get()
(in
ResidueListStepWiseSamplerCAP
)
get_two_body_table_size()
(in
DensePDEdge
)
get()
(in
Pool_RMSDCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_two_body_table_size()
(in
DoubleDensePDEdge
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_two_body_table_size()
(in
DoubleLazyEdge
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
InputStreamStepWiseSamplerAP
)
get_two_body_table_size()
(in
FASTEREdge
)
get()
(in
CartesianAtomAP
)
get()
(in
InputStreamStepWiseSamplerCAP
)
get_two_body_table_size()
(in
LazyEdge
)
get()
(in
CartesianAtomCAP
)
get()
(in
ProteinBetaAntiParallelStepWiseSamplerAP
)
get_two_body_table_size()
(in
LinearMemEdge
)
get()
(in
MD_AngleAP
)
get()
(in
ProteinBetaAntiParallelStepWiseSamplerCAP
)
get_two_body_table_size()
(in
PDEdge
)
get()
(in
MD_AngleCAP
)
get()
(in
ProteinFragmentStepWiseSamplerAP
)
get_two_body_table_size()
(in
SymmLinearMemEdge
)
get()
(in
MD_BondAP
)
get()
(in
ProteinFragmentStepWiseSamplerCAP
)
get_two_body_table_size()
(in
SymmMinimalistEdge
)
get()
(in
MD_BondCAP
)
get()
(in
ProteinMainChainStepWiseSamplerAP
)
get_type()
(in
PeptideDeriverFilter
)
get()
(in
MD_HarmonicDihedralAP
)
get()
(in
ProteinMainChainStepWiseSamplerCAP
)
get_type()
(in
ExposedHydrophobicsFilter
)
get()
(in
MD_HarmonicDihedralCAP
)
get()
(in
EulerAnglesAP
)
get_type()
(in
DockingHighResFilter
)
get()
(in
MolecularDynamicsAP
)
get()
(in
EulerAnglesCAP
)
get_type()
(in
DockingLowResFilter
)
get()
(in
MolecularDynamicsCAP
)
get()
(in
RigidBodyStepWiseSamplerAP
)
get_type()
(in
CalculatorFilter
)
get()
(in
CheckPointerAP
)
get()
(in
RigidBodyStepWiseSamplerCAP
)
get_type()
(in
CombinedFilter
)
get()
(in
CheckPointerCAP
)
get()
(in
RigidBodyStepWiseSamplerValueRangeAP
)
get_type()
(in
CompoundFilter
)
get()
(in
FileBufferAP
)
get()
(in
RigidBodyStepWiseSamplerValueRangeCAP
)
get_type()
(in
ContingentFilter
)
get()
(in
FileBufferCAP
)
get()
(in
RigidBodyStepWiseSamplerWithResidueAlternativesAP
)
get_type()
(in
FalseFilter
)
get()
(in
TimerAP
)
get()
(in
RigidBodyStepWiseSamplerWithResidueAlternativesCAP
)
get_type()
(in
Filter
)
get()
(in
TimerCAP
)
get()
(in
RigidBodyStepWiseSamplerWithResidueListAP
)
get_type()
(in
IfThenFilter
)
get()
(in
APClusterAP
)
get()
(in
RigidBodyStepWiseSamplerWithResidueListCAP
)
get_type()
(in
MoveBeforeFilter
)
get()
(in
APClusterCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_type()
(in
ReplicateFilter
)
get()
(in
AssignToClustersMoverAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_type()
(in
StochasticFilter
)
get()
(in
AssignToClustersMoverCAP
)
get()
(in
RNA_ChiStepWiseSamplerAP
)
get_type()
(in
TimeFilter
)
get()
(in
ClusterAP
)
get()
(in
RNA_ChiStepWiseSamplerCAP
)
get_type()
(in
TrueFilter
)
get()
(in
ClusterBaseAP
)
get()
(in
RNA_KIC_SamplerAP
)
get_type()
(in
CoreDunbrackFilter
)
get()
(in
ClusterBaseCAP
)
get()
(in
RNA_KIC_SamplerCAP
)
get_type()
(in
FragQualFilter
)
get()
(in
ClusterCAP
)
get()
(in
RNA_KinematicCloserAP
)
get_type()
(in
HSSTripletFilter
)
get()
(in
ClusterPhilStyleAP
)
get()
(in
RNA_KinematicCloserCAP
)
get_type()
(in
HelixKinkFilter
)
get()
(in
ClusterPhilStyleCAP
)
get()
(in
RNA_MC_MultiSuiteAP
)
get_type()
(in
HelixPairingFilter
)
get()
(in
ClusterPhilStyle_LoopAP
)
get()
(in
RNA_MC_MultiSuiteCAP
)
get_type()
(in
InterlockingAromaFilter
)
get()
(in
ClusterPhilStyle_LoopCAP
)
get()
(in
RNA_MC_SugarAP
)
get_type()
(in
NcontactsFilter
)
get()
(in
ClusterPhilStyle_PoseReporterAP
)
get()
(in
RNA_MC_SugarCAP
)
get_type()
(in
ParallelBetaPairingPreferenceFilter
)
get()
(in
ClusterPhilStyle_PoseReporterCAP
)
get()
(in
RNA_MC_SuiteAP
)
get_type()
(in
SecondaryStructureCountFilter
)
get()
(in
DataPointAP
)
get()
(in
RNA_MC_SuiteCAP
)
get_type()
(in
SecondaryStructureFilter
)
get()
(in
DataPointCAP
)
get()
(in
RNA_NucleosideStepWiseSamplerAP
)
get_type()
(in
SecondaryStructureHasResidueFilter
)
get()
(in
EnsembleConstraintsAP
)
get()
(in
RNA_NucleosideStepWiseSamplerCAP
)
get_type()
(in
SheetTopologyFilter
)
get()
(in
EnsembleConstraintsCAP
)
get()
(in
RNA_SugarStepWiseSamplerAP
)
get_type()
(in
FragmentLookupFilter
)
get()
(in
EnsembleConstraints_SimpleAP
)
get()
(in
RNA_SugarStepWiseSamplerCAP
)
get_type()
(in
AtomCountFilter
)
get()
(in
EnsembleConstraints_SimpleCAP
)
get()
(in
RNA_SuiteStepWiseSamplerAP
)
get_type()
(in
ChainExistsFilter
)
get()
(in
ExemplarAP
)
get()
(in
RNA_SuiteStepWiseSamplerCAP
)
get_type()
(in
CompleteConnectionsFilter
)
get()
(in
ExemplarCAP
)
get()
(in
RNA_TorsionScreenerAP
)
get_type()
(in
HBondAcceptorFilter
)
get()
(in
GatherPosesMoverAP
)
get()
(in
RNA_TorsionScreenerCAP
)
get_type()
(in
HBondDonorFilter
)
get()
(in
GatherPosesMoverCAP
)
get()
(in
AlignRMSD_ScreenerAP
)
get_type()
(in
HeavyAtomFilter
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
AlignRMSD_ScreenerCAP
)
get_type()
(in
MolarMassFilter
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
AnchorSugarScreenerAP
)
get_type()
(in
MolecularMassFilter
)
get()
(in
CoarseRNA_FragmentsAP
)
get()
(in
AnchorSugarScreenerCAP
)
get_type()
(in
ClashCheckFilter
)
get()
(in
CoarseRNA_FragmentsCAP
)
get()
(in
BaseBinMapUpdaterAP
)
get_type()
(in
GetRBDOFValues
)
get()
(in
CoarseRNA_LoopCloserAP
)
get()
(in
BaseBinMapUpdaterCAP
)
get_type()
(in
InterfacePackingFilter
)
get()
(in
CoarseRNA_LoopCloserCAP
)
get()
(in
BaseCentroidScreenerAP
)
get_type()
(in
OligomericAverageDegreeFilter
)
get()
(in
AlignRmsdTargetEvaluatorCreatorAP
)
get()
(in
BaseCentroidScreenerCAP
)
get_type()
(in
SymUnsatHbondFilter
)
get()
(in
AlignRmsdTargetEvaluatorCreatorCAP
)
get()
(in
BulgeApplierAP
)
get_type()
(in
Mover
)
get()
(in
Align_RmsdEvaluatorAP
)
get()
(in
BulgeApplierCAP
)
get_type()
(in
AtomicContactCountFilter
)
get()
(in
Align_RmsdEvaluatorCAP
)
get()
(in
CentroidDistanceScreenerAP
)
get_type()
(in
AverageDegreeFilter
)
get()
(in
Align_RotamerEvaluatorAP
)
get()
(in
CentroidDistanceScreenerCAP
)
get_type()
(in
BindingStrainFilter
)
get()
(in
Align_RotamerEvaluatorCAP
)
get()
(in
FastForwardToNextResidueAlternativeAP
)
get_type()
(in
BoltzmannFilter
)
get()
(in
AlignmentClusterAP
)
get()
(in
FastForwardToNextResidueAlternativeCAP
)
get_type()
(in
ClashWithTargetFilter
)
get()
(in
AlignmentClusterCAP
)
get()
(in
FastForwardToNextRigidBodyAP
)
get_type()
(in
DesignableResiduesFilter
)
get()
(in
AlignmentClusteringAP
)
get()
(in
FastForwardToNextRigidBodyCAP
)
get_type()
(in
DisulfideFilter
)
get()
(in
AlignmentClusteringCAP
)
get()
(in
IntegrationTestBreakerAP
)
get_type()
(in
FNatFilter
)
get()
(in
AlignmentSetAP
)
get()
(in
IntegrationTestBreakerCAP
)
get_type()
(in
FilterScanFilter
)
get()
(in
AlignmentSetCAP
)
get()
(in
O2PrimeScreenerAP
)
get_type()
(in
HbondsToAtomFilter
)
get()
(in
ExtraThreadingMoverAP
)
get()
(in
O2PrimeScreenerCAP
)
get_type()
(in
HbondsToResidueFilter
)
get()
(in
ExtraThreadingMoverCAP
)
get()
(in
PackScreenerAP
)
get_type()
(in
IRmsdFilter
)
get()
(in
GenericJobInputterAP
)
get()
(in
PackScreenerCAP
)
get_type()
(in
InterfaceHolesFilter
)
get()
(in
GenericJobInputterCAP
)
get()
(in
PartitionContactScreenerAP
)
get_type()
(in
LRmsdFilter
)
get()
(in
GenericJobInputterCreatorAP
)
get()
(in
PartitionContactScreenerCAP
)
get_type()
(in
RelativeSegmentFilter
)
get()
(in
GenericJobInputterCreatorCAP
)
get()
(in
PhosphateScreenerAP
)
get_type()
(in
RmsdFilter
)
get()
(in
IgnoreSubsetConstraintSetAP
)
get()
(in
PhosphateScreenerCAP
)
get_type()
(in
RmsdSimpleFilter
)
get()
(in
IgnoreSubsetConstraintSetCAP
)
get()
(in
PoseSelectionScreenerAP
)
get_type()
(in
SSamountFilter
)
get()
(in
LoopRelaxMoverAP
)
get()
(in
PoseSelectionScreenerCAP
)
get_type()
(in
SequenceRecoveryFilter
)
get()
(in
LoopRelaxMoverCAP
)
get()
(in
ProteinCCD_ClosureScreenerAP
)
get_type()
(in
SpecificResiduesNearInterfaceFilter
)
get()
(in
LoopRelaxMoverCreatorAP
)
get()
(in
ProteinCCD_ClosureScreenerCAP
)
get_type()
(in
StubScoreFilter
)
get()
(in
LoopRelaxMoverCreatorCAP
)
get()
(in
RNA_ChainClosableGeometryResidueBasedScreenerAP
)
get_type()
(in
StubScoreLoopsFilter
)
get()
(in
LoopRelaxThreadingMoverAP
)
get()
(in
RNA_ChainClosableGeometryResidueBasedScreenerCAP
)
get_type()
(in
Torsion
)
get()
(in
LoopRelaxThreadingMoverCAP
)
get()
(in
RNA_ChainClosableGeometryScreenerAP
)
get_type()
(in
AbinitioBaseFilter
)
get()
(in
MultiThreadingMoverAP
)
get()
(in
RNA_ChainClosableGeometryScreenerCAP
)
get_type()
(in
AlaScan
)
get()
(in
MultiThreadingMoverCAP
)
get()
(in
RNA_ChainClosableGeometryStubBasedScreenerAP
)
get_type()
(in
AngleToVector
)
get()
(in
PartialThreadingMoverAP
)
get()
(in
RNA_ChainClosableGeometryStubBasedScreenerCAP
)
get_type()
(in
AtomicContactFilter
)
get()
(in
PartialThreadingMoverCAP
)
get()
(in
RNA_ChainClosureScreenerAP
)
get_type()
(in
AtomicDistanceFilter
)
get()
(in
RecoverSideChainsMoverAP
)
get()
(in
RNA_ChainClosureScreenerCAP
)
get_type()
(in
AveragePathLengthFilter
)
get()
(in
RecoverSideChainsMoverCAP
)
get()
(in
ResidueContactScreenerAP
)
get_type()
(in
BuriedUnsatHbondFilter
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
ResidueContactScreenerCAP
)
get_type()
(in
COFilter
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
SampleApplierAP
)
get_type()
(in
ConservedPosMutationFilter
)
get()
(in
StealLigandMoverAP
)
get()
(in
SampleApplierCAP
)
get_type()
(in
ConstraintScoreCutoffFilter
)
get()
(in
StealLigandMoverCAP
)
get()
(in
ScorerAP
)
get_type()
(in
DdGScan
)
get()
(in
StealSideChainsMoverAP
)
get()
(in
ScorerCAP
)
get_type()
(in
DdgFilter
)
get()
(in
StealSideChainsMoverCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_type()
(in
DeltaFilter
)
get()
(in
ThreadingJobAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_type()
(in
DisulfideEntropyFilter
)
get()
(in
ThreadingJobCAP
)
get()
(in
StepWiseResiduePairScreenerAP
)
get_type()
(in
DomainInterfaceFilter
)
get()
(in
ThreadingJobInputterAP
)
get()
(in
StepWiseResiduePairScreenerCAP
)
get_type()
(in
EnergyPerResidueFilter
)
get()
(in
ThreadingJobInputterCAP
)
get()
(in
StepWiseScreenerAP
)
get_type()
(in
ExpiryFilter
)
get()
(in
ThreadingJobInputterCreatorAP
)
get()
(in
StepWiseScreenerCAP
)
get_type()
(in
FileExistFilter
)
get()
(in
ThreadingJobInputterCreatorCAP
)
get()
(in
StubApplierAP
)
get_type()
(in
FileRemoveFilter
)
get()
(in
ThreadingMoverAP
)
get()
(in
StubApplierCAP
)
get_type()
(in
GeometryFilter
)
get()
(in
ThreadingMoverCAP
)
get()
(in
StubDistanceScreenerAP
)
get_type()
(in
HolesFilter
)
get()
(in
ResidueFeatureAP
)
get()
(in
StubDistanceScreenerCAP
)
get_type()
(in
InterRepeatContactFilter
)
get()
(in
ResidueFeatureCAP
)
get()
(in
SugarInstantiatorAP
)
get_type()
(in
InterfaceBindingEnergyDensityFilter
)
get()
(in
ResidueFeatureFactoryAP
)
get()
(in
SugarInstantiatorCAP
)
get_type()
(in
InterfaceSasaFilter
)
get()
(in
ResidueFeatureFactoryCAP
)
get()
(in
TagDefinitionAP
)
get_type()
(in
IntraRepeatContactFilter
)
get()
(in
SSFeatureAP
)
get()
(in
TagDefinitionCAP
)
get_type()
(in
LeastNativeLike9merFilter
)
get()
(in
SSFeatureCAP
)
get()
(in
VDW_BinScreenerAP
)
get_type()
(in
MotifScoreFilter
)
get()
(in
TorsionFeatureAP
)
get()
(in
VDW_BinScreenerCAP
)
get_type()
(in
MultipleSigmoids
)
get()
(in
TorsionFeatureCAP
)
get()
(in
StepWiseCSA_JobDistributorAP
)
get_type()
(in
MutationsFilter
)
get()
(in
AmbiguousMultiConstraintAP
)
get()
(in
StepWiseCSA_JobDistributorCAP
)
get_type()
(in
NMerPSSMEnergyFilter
)
get()
(in
AmbiguousMultiConstraintCAP
)
get()
(in
StepWiseJobDistributorAP
)
get_type()
(in
NMerSVMEnergyFilter
)
get()
(in
BindingSiteConstraintAP
)
get()
(in
StepWiseJobDistributorCAP
)
get_type()
(in
NeighborTypeFilter
)
get()
(in
BindingSiteConstraintCAP
)
get()
(in
StepWiseMonteCarloJobDistributorAP
)
get_type()
(in
NetChargeFilter
)
get()
(in
BindingSiteConstraintCreatorAP
)
get()
(in
StepWiseMonteCarloJobDistributorCAP
)
get_type()
(in
NonSequentialNeighborsFilter
)
get()
(in
BindingSiteConstraintCreatorCAP
)
get()
(in
CentroidRelaxMoverAP
)
get_type()
(in
Operator
)
get()
(in
COMCoordinateConstraintAP
)
get()
(in
CentroidRelaxMoverCAP
)
get_type()
(in
PDDFScoreFilter
)
get()
(in
COMCoordinateConstraintCAP
)
get()
(in
FullatomRelaxMoverAP
)
get_type()
(in
PackStatFilter
)
get()
(in
CombinedConstraintEvaluatorAP
)
get()
(in
FullatomRelaxMoverCAP
)
get_type()
(in
PackerNeighborGraphFilter
)
get()
(in
CombinedConstraintEvaluatorCAP
)
get()
(in
SurfaceDockingProtocolAP
)
get_type()
(in
PoseComment
)
get()
(in
CombinedConstraintEvaluatorCreatorAP
)
get()
(in
SurfaceDockingProtocolCAP
)
get_type()
(in
PoseInfoFilter
)
get()
(in
CombinedConstraintEvaluatorCreatorCAP
)
get()
(in
SurfaceOrientMoverAP
)
get_type()
(in
RGFilter
)
get()
(in
ConstraintEvaluatorAP
)
get()
(in
SurfaceOrientMoverCAP
)
get_type()
(in
RangeFilter
)
get()
(in
ConstraintEvaluatorCAP
)
get()
(in
SurfaceParametersAP
)
get_type()
(in
RelativePoseFilter
)
get()
(in
ConstraintEvaluatorCreatorAP
)
get()
(in
SurfaceParametersCAP
)
get_type()
(in
RepeatParameterFilter
)
get()
(in
ConstraintEvaluatorCreatorCAP
)
get()
(in
SurfaceVectorFallbackConfigurationAP
)
get_type()
(in
ReportFilter
)
get()
(in
MaxSeqSepConstraintSetAP
)
get()
(in
SurfaceVectorFallbackConfigurationCAP
)
get_type()
(in
ResidueBurialFilter
)
get()
(in
MaxSeqSepConstraintSetCAP
)
get()
(in
SurfaceVectorFallbackConfigurationCreatorAP
)
get_type()
(in
ResidueCountFilter
)
get()
(in
NamedAtomPairConstraintCreatorAP
)
get()
(in
SurfaceVectorFallbackConfigurationCreatorCAP
)
get_type()
(in
ResidueDistanceFilter
)
get()
(in
NamedAtomPairConstraintCreatorCAP
)
get()
(in
SurfaceVectorLoaderAP
)
get_type()
(in
ResidueIEFilter
)
get()
(in
SequenceCoupling1BDConstraintAP
)
get()
(in
SurfaceVectorLoaderCAP
)
get_type()
(in
ResidueSetChainEnergyFilter
)
get()
(in
SequenceCoupling1BDConstraintCAP
)
get()
(in
SurfaceVectorLoaderCreatorAP
)
get_type()
(in
ResiduesInInterfaceFilter
)
get()
(in
SequenceCoupling1BDConstraintCreatorAP
)
get()
(in
SurfaceVectorLoaderCreatorCAP
)
get_type()
(in
RotamerBoltzmannWeight
)
get()
(in
SequenceCoupling1BDConstraintCreatorCAP
)
get()
(in
SurfaceVectorOptionsAP
)
get_type()
(in
SAXSScoreFilter
)
get()
(in
SequenceCouplingConstraintAP
)
get()
(in
SurfaceVectorOptionsCAP
)
get_type()
(in
SSMotifFinder
)
get()
(in
SequenceCouplingConstraintCAP
)
get()
(in
SurfaceVectorOptionsCreatorAP
)
get_type()
(in
SavePoseConstraintToFileFilter
)
get()
(in
SequenceCouplingConstraintCreatorAP
)
get()
(in
SurfaceVectorOptionsCreatorCAP
)
get_type()
(in
SaveResfileToDiskFilter
)
get()
(in
SequenceCouplingConstraintCreatorCAP
)
get()
(in
SymDockBaseProtocolAP
)
get_type()
(in
ScoreCutoffFilter
)
get()
(in
ContactAP
)
get()
(in
SymDockBaseProtocolCAP
)
get_type()
(in
ScoreTypeFilter
)
get()
(in
ContactCAP
)
get()
(in
SymDockProtocolAP
)
get_type()
(in
ShapeComplementarityFilter
)
get()
(in
ContactMapAP
)
get()
(in
SymDockProtocolCAP
)
get_type()
(in
SheetFilter
)
get()
(in
ContactMapCAP
)
get()
(in
SymDockProtocolCreatorAP
)
get_type()
(in
SidechainRmsdFilter
)
get()
(in
ContactMapCreatorAP
)
get()
(in
SymDockProtocolCreatorCAP
)
get_type()
(in
Sigmoid
)
get()
(in
ContactMapCreatorCAP
)
get()
(in
SymDockingHiResAP
)
get_type()
(in
StemFinder
)
get()
(in
ContactPartnerAP
)
get()
(in
SymDockingHiResCAP
)
get_type()
(in
SymmetricMotifFilter
)
get()
(in
ContactPartnerCAP
)
get()
(in
SymDockingLowResAP
)
get_type()
(in
TaskAwareSASAFilter
)
get()
(in
FitBfactorsMoverAP
)
get()
(in
SymDockingLowResCAP
)
get_type()
(in
TaskAwareScoreTypeFilter
)
get()
(in
FitBfactorsMoverCAP
)
get()
(in
SymFoldandDockMoveRbJumpMoverAP
)
get_type()
(in
TerminusDistanceFilter
)
get()
(in
FitBfactorsMoverCreatorAP
)
get()
(in
SymFoldandDockMoveRbJumpMoverCAP
)
get_type()
(in
TotalSasaFilter
)
get()
(in
FitBfactorsMoverCreatorCAP
)
get()
(in
SymFoldandDockMoveRbJumpMoverCreatorAP
)
get_type()
(in
KClusterElement
)
get()
(in
LoadDensityMapMoverAP
)
get()
(in
SymFoldandDockMoveRbJumpMoverCreatorCAP
)
get_type_difference_name()
(in
GasteigerAtomTypeData
)
get()
(in
LoadDensityMapMoverCAP
)
get()
(in
SymFoldandDockRbTrialMoverAP
)
get_ub_function_cutoff()
(in
Interpolator
)
get()
(in
LoadDensityMapMoverCreatorAP
)
get()
(in
SymFoldandDockRbTrialMoverCAP
)
get_ubdy()
(in
SplineGenerator
)
get()
(in
LoadDensityMapMoverCreatorCAP
)
get()
(in
SymFoldandDockRbTrialMoverCreatorAP
)
get_ubx()
(in
SplineGenerator
)
get()
(in
RecomputeDensityMapMoverAP
)
get()
(in
SymFoldandDockRbTrialMoverCreatorCAP
)
get_uby()
(in
SplineGenerator
)
get()
(in
RecomputeDensityMapMoverCAP
)
get()
(in
SymFoldandDockSlideTrialMoverAP
)
get_unbound_mode()
(in
AnchorMoversData
)
get()
(in
RecomputeDensityMapMoverCreatorAP
)
get()
(in
SymFoldandDockSlideTrialMoverCAP
)
get_undefined_real()
(in
rosetta.utility._utility_
)
get()
(in
RecomputeDensityMapMoverCreatorCAP
)
get()
(in
SymFoldandDockSlideTrialMoverCreatorAP
)
get_undefined_size()
(in
rosetta.utility._utility_
)
get()
(in
SetCrystWeightMoverAP
)
get()
(in
SymFoldandDockSlideTrialMoverCreatorCAP
)
get_UnfoldedStatePotential()
(in
ScoringManager
)
get()
(in
SetCrystWeightMoverCAP
)
get()
(in
SymInterfaceSidechainMinMoverAP
)
get_unfoled_potential_file_weights()
(in
UnfoldedStatePotential
)
get()
(in
SetCrystWeightMoverCreatorAP
)
get()
(in
SymInterfaceSidechainMinMoverCAP
)
get_uniform_backrub()
(in
CoupledMover
)
get()
(in
SetCrystWeightMoverCreatorCAP
)
get()
(in
SymRestrictTaskForDockingAP
)
get_uniform_backrub()
(in
ShortBackrubMover
)
get()
(in
SetRefinementOptionsMoverAP
)
get()
(in
SymRestrictTaskForDockingCAP
)
get_unique_connection_res()
(in
rosetta.protocols.stepwise.modeler._protocols_stepwise_modeler_
)
get()
(in
SetRefinementOptionsMoverCAP
)
get()
(in
SymSidechainMinMoverAP
)
get_unrecognized_atoms()
(in
PDBInfo
)
get()
(in
SetRefinementOptionsMoverCreatorAP
)
get()
(in
SymSidechainMinMoverCAP
)
get_unrecognized_res_name()
(in
PDBInfo
)
get()
(in
SetRefinementOptionsMoverCreatorCAP
)
get()
(in
MPSymDockMoverAP
)
get_unrecognized_res_size()
(in
PDBInfo
)
get()
(in
TagPoseWithRefinementStatsMoverAP
)
get()
(in
MPSymDockMoverCAP
)
get_unrelaxed_pose()
(in
VIP_Mover
)
get()
(in
TagPoseWithRefinementStatsMoverCAP
)
get()
(in
MPSymDockMoverCreatorAP
)
get_update()
(in
AlignRMSD_Screener
)
get()
(in
TagPoseWithRefinementStatsMoverCreatorAP
)
get()
(in
MPSymDockMoverCreatorCAP
)
get_update()
(in
AnchorSugarScreener
)
get()
(in
TagPoseWithRefinementStatsMoverCreatorCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_update()
(in
BaseBinMapUpdater
)
get()
(in
UpdateSolventMoverAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_update()
(in
BaseCentroidScreener
)
get()
(in
UpdateSolventMoverCAP
)
get()
(in
AllowInsert
)
get_update()
(in
BulgeApplier
)
get()
(in
UpdateSolventMoverCreatorAP
)
get()
(in
AllowInsertAP
)
get_update()
(in
CentroidDistanceScreener
)
get()
(in
UpdateSolventMoverCreatorCAP
)
get()
(in
AllowInsertCAP
)
get_update()
(in
FastForwardToNextResidueAlternative
)
get()
(in
CreateAngleConstraintAP
)
get()
(in
ClusterBaseAP
)
get_update()
(in
FastForwardToNextRigidBody
)
get()
(in
CreateAngleConstraintCAP
)
get()
(in
ClusterBaseCAP
)
get_update()
(in
IntegrationTestBreaker
)
get()
(in
CreateAngleConstraintCreatorAP
)
get()
(in
ClusterOptionsAP
)
get_update()
(in
O2PrimeScreener
)
get()
(in
CreateAngleConstraintCreatorCAP
)
get()
(in
ClusterOptionsCAP
)
get_update()
(in
PackScreener
)
get()
(in
CreateDistanceConstraintAP
)
get()
(in
ClusterPhilStyleAP
)
get_update()
(in
PartitionContactScreener
)
get()
(in
CreateDistanceConstraintCAP
)
get()
(in
ClusterPhilStyleCAP
)
get_update()
(in
PhosphateScreener
)
get()
(in
CreateDistanceConstraintCreatorAP
)
get()
(in
CovalentResidueNetworkAP
)
get_update()
(in
PoseSelectionScreener
)
get()
(in
CreateDistanceConstraintCreatorCAP
)
get()
(in
CovalentResidueNetworkCAP
)
get_update()
(in
ProteinCCD_ClosureScreener
)
get()
(in
CreateTorsionConstraintAP
)
get()
(in
DecoySetEvaluationAP
)
get_update()
(in
RNA_ChainClosableGeometryResidueBasedScreener
)
get()
(in
CreateTorsionConstraintCAP
)
get()
(in
DecoySetEvaluationCAP
)
get_update()
(in
RNA_ChainClosableGeometryScreener
)
get()
(in
CreateTorsionConstraintCreatorAP
)
get()
(in
DistanceResidueNetworkAP
)
get_update()
(in
RNA_ChainClosableGeometryStubBasedScreener
)
get()
(in
CreateTorsionConstraintCreatorCAP
)
get()
(in
DistanceResidueNetworkCAP
)
get_update()
(in
RNA_ChainClosureScreener
)
get()
(in
DeclareBondAP
)
get()
(in
DummyClassAP
)
get_update()
(in
ResidueContactScreener
)
get()
(in
DeclareBondCAP
)
get()
(in
DummyClassCAP
)
get_update()
(in
SampleApplier
)
get()
(in
DeclareBondCreatorAP
)
get()
(in
GreedyKCenterAP
)
get_update()
(in
Scorer
)
get()
(in
DeclareBondCreatorCAP
)
get()
(in
GreedyKCenterCAP
)
get_update()
(in
StepWiseResiduePairScreener
)
get()
(in
PeptideStubMoverAP
)
get()
(in
IGLigandDesignEdgeUpweighterAP
)
get_update()
(in
StepWiseScreener
)
get()
(in
PeptideStubMoverCAP
)
get()
(in
IGLigandDesignEdgeUpweighterCAP
)
get_update()
(in
StubApplier
)
get()
(in
PeptideStubMoverCreatorAP
)
get()
(in
InteratomicVarianceMatrixAP
)
get_update()
(in
StubDistanceScreener
)
get()
(in
PeptideStubMoverCreatorCAP
)
get()
(in
InteratomicVarianceMatrixCAP
)
get_update()
(in
SugarInstantiator
)
get()
(in
ddGMoverAP
)
get()
(in
KClusterAP
)
get_update()
(in
TagDefinition
)
get()
(in
ddGMoverCAP
)
get()
(in
KClusterCAP
)
get_update()
(in
VDW_BinScreener
)
get()
(in
ExposedHydrophobicsFilterAP
)
get()
(in
KClusterDataAP
)
get_update_boinc()
(in
MonteCarlo
)
get()
(in
ExposedHydrophobicsFilterCAP
)
get()
(in
KClusterDataCAP
)
get_upper_bound_dy()
(in
SplineFunc
)
get()
(in
ExposedHydrophobicsFilterCreatorAP
)
get()
(in
KClusterElementAP
)
get_upper_bound_x()
(in
SplineFunc
)
get()
(in
ExposedHydrophobicsFilterCreatorCAP
)
get()
(in
KClusterElementCAP
)
get_upper_bound_y()
(in
SplineFunc
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
KMedoidAP
)
get_upstream_restype()
(in
DownstreamBuilder
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
KMedoidCAP
)
get_upstream_restype()
(in
LigandConformerBuilder
)
get()
(in
GreedyOptMutationMoverAP
)
get()
(in
NodeAP
)
get_upstream_restype()
(in
RigidLigandBuilder
)
get()
(in
GreedyOptMutationMoverCAP
)
get()
(in
NodeCAP
)
get_usage_from_procfilesystem()
(in
rosetta.basic._basic_
)
get()
(in
GreedyOptMutationMoverCreatorAP
)
get()
(in
ResidueGroupIGEdgeUpweighterAP
)
get_use_centroid_dG()
(in
InterfaceAnalyzerMover
)
get()
(in
GreedyOptMutationMoverCreatorCAP
)
get()
(in
ResidueGroupIGEdgeUpweighterCAP
)
get_use_lowest()
(in
FragmentScoringMethod
)
get()
(in
ParetoOptMutationMoverAP
)
get()
(in
ResidueNetworkAP
)
get_use_ncaa_rotlib()
(in
ResidueType
)
get()
(in
ParetoOptMutationMoverCAP
)
get()
(in
ResidueNetworkCAP
)
get_use_peptoid_rotlib()
(in
ResidueType
)
get()
(in
ParetoOptMutationMoverCreatorAP
)
get()
(in
SF_ReplicaAP
)
get_use_symmetry()
(in
SymmetryInfo
)
get()
(in
ParetoOptMutationMoverCreatorCAP
)
get()
(in
SF_ReplicaCAP
)
get_user_defined_name()
(in
Filter
)
get()
(in
PointMutationCalculatorAP
)
get()
(in
SelectResiduesByLayerAP
)
get_user_defined_name()
(in
DomainInterfaceFilter
)
get()
(in
PointMutationCalculatorCAP
)
get()
(in
SelectResiduesByLayerCAP
)
get_valence_electrons_sp()
(in
GasteigerAtomTypeData
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_valid_ramachandran_hashes()
(in
BetaTurnDetection
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_Vall()
(in
FragmentLibraryManager
)
get()
(in
DNABaseAP
)
get()
(in
AlignPoseToInvrotTreeMoverAP
)
get_vall()
(in
FragmentPicker
)
get()
(in
DNABaseCAP
)
get()
(in
AlignPoseToInvrotTreeMoverCAP
)
get_vall_middle_res_id()
(in
FragmentCandidate
)
get()
(in
DNABasepairAP
)
get()
(in
AllowedSeqposForGeomCstAP
)
get_vallLookbackPotential()
(in
ScoringManager
)
get()
(in
DNABasepairCAP
)
get()
(in
AllowedSeqposForGeomCstCAP
)
get_value()
(in
ContingentFilter
)
get()
(in
DNABasestepAP
)
get()
(in
CovalentConnectionReplaceInfoAP
)
get_value()
(in
rosetta.utility.json_spirit._utility_json_spirit_
)
get()
(in
DNABasestepCAP
)
get()
(in
CovalentConnectionReplaceInfoCAP
)
get_value_list()
(in
StepWiseSamplerOneValueComb
)
get()
(in
DNAParametersAP
)
get()
(in
CstResInteractionsAP
)
get_values()
(in
BicubicSpline
)
get()
(in
DNAParametersCAP
)
get()
(in
CstResInteractionsCAP
)
get_values()
(in
CubicSpline
)
get()
(in
DesignProteinBackboneAroundDNAAP
)
get()
(in
EnzConstraintIOAP
)
get_values()
(in
RigidBodyStepWiseSampler
)
get()
(in
DesignProteinBackboneAroundDNACAP
)
get()
(in
EnzConstraintIOCAP
)
get_variable()
(in
SimpleExpressionCreator
)
get()
(in
DesignProteinBackboneAroundDNACreatorAP
)
get()
(in
EnzConstraintParametersAP
)
get_variant_from_string()
(in
ResidueProperties
)
get()
(in
DesignProteinBackboneAroundDNACreatorCAP
)
get()
(in
EnzConstraintParametersCAP
)
get_vary_bondangles()
(in
KinematicMover
)
get()
(in
DnaChainsAP
)
get()
(in
EnzCstTemplateResAP
)
get_vary_cutpoints()
(in
AnchoredDesignMover
)
get()
(in
DnaChainsCAP
)
get()
(in
EnzCstTemplateResAtomsAP
)
get_VdRdPhi()
(in
BBGaussianMover
)
get()
(in
DnaDesignDefAP
)
get()
(in
EnzCstTemplateResAtomsCAP
)
get_VDW_weight()
(in
AnchorMoversData
)
get()
(in
DnaDesignDefCAP
)
get()
(in
EnzCstTemplateResCAP
)
get_vec_AA_kind()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
DnaInterfaceFinderAP
)
get()
(in
EnzCstTemplateResCacheAP
)
get_vec_distinct_sheet_id()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
DnaInterfaceFinderCAP
)
get()
(in
EnzCstTemplateResCacheCAP
)
get_vec_of_sw_can_by_sh_id()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
DnaInterfaceMinMoverAP
)
get()
(in
EnzdesCacheableObserverAP
)
get_vector_exclude_residues()
(in
PCS_Energy_parameters_manager
)
get()
(in
DnaInterfaceMinMoverCAP
)
get()
(in
EnzdesCacheableObserverCAP
)
get_vector_exclude_residues()
(in
PCS_Energy_parameters_manager_Ts1
)
get()
(in
DnaInterfaceMinMoverCreatorAP
)
get()
(in
EnzdesCstCacheAP
)
get_vector_exclude_residues()
(in
PCS_Energy_parameters_manager_Ts2
)
get()
(in
DnaInterfaceMinMoverCreatorCAP
)
get()
(in
EnzdesCstCacheCAP
)
get_vector_exclude_residues()
(in
PCS_Energy_parameters_manager_Ts3
)
get()
(in
DnaInterfaceMultiStateDesignAP
)
get()
(in
EnzdesCstParamCacheAP
)
get_vector_exclude_residues()
(in
PCS_Energy_parameters_manager_Ts4
)
get()
(in
DnaInterfaceMultiStateDesignCAP
)
get()
(in
EnzdesCstParamCacheCAP
)
get_vector_filename()
(in
PCS_Energy_parameters_manager
)
get()
(in
DnaInterfaceMultiStateDesignCreatorAP
)
get()
(in
EnzdesLoopInfoAP
)
get_vector_filename()
(in
PcsEnergyParameter
)
get()
(in
DnaInterfaceMultiStateDesignCreatorCAP
)
get()
(in
EnzdesLoopInfoCAP
)
get_vector_filename()
(in
PCS_Energy_parameters_manager_Ts1
)
get()
(in
DnaInterfacePackerAP
)
get()
(in
EnzdesLoopsFileAP
)
get_vector_filename()
(in
PCS_Energy_parameters_manager_Ts2
)
get()
(in
DnaInterfacePackerCAP
)
get()
(in
EnzdesLoopsFileCAP
)
get_vector_filename()
(in
PCS_Energy_parameters_manager_Ts3
)
get()
(in
DnaInterfacePackerCreatorAP
)
get()
(in
EnzdesSeqRecoveryCacheAP
)
get_vector_filename()
(in
PCS_Energy_parameters_manager_Ts4
)
get()
(in
DnaInterfacePackerCreatorCAP
)
get()
(in
EnzdesSeqRecoveryCacheCAP
)
get_vector_of_loop_AA_distribution()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
DnaNeighborAP
)
get()
(in
ExternalGeomSamplerAP
)
get_vector_of_strand_AA_distribution()
(in
rosetta.protocols.features.strand_assembly._protocols_features_strand_assembly_
)
get()
(in
DnaNeighborCAP
)
get()
(in
ExternalGeomSamplerCAP
)
get_vector_weight()
(in
PCS_Energy_parameters_manager
)
get()
(in
DnaPositionAP
)
get()
(in
GeomSampleInfoAP
)
get_vector_weight()
(in
PcsEnergyParameter
)
get()
(in
DnaPositionCAP
)
get()
(in
GeomSampleInfoCAP
)
get_vector_weight()
(in
PCS_Energy_parameters_manager_Ts1
)
get()
(in
PDBOutputAP
)
get()
(in
InvrotCollectorAP
)
get_vector_weight()
(in
PCS_Energy_parameters_manager_Ts2
)
get()
(in
PDBOutputCAP
)
get()
(in
InvrotCollectorCAP
)
get_vector_weight()
(in
PCS_Energy_parameters_manager_Ts3
)
get()
(in
PositionTypeAP
)
get()
(in
InvrotTargetAP
)
get_vector_weight()
(in
PCS_Energy_parameters_manager_Ts4
)
get()
(in
PositionTypeCAP
)
get()
(in
InvrotTargetCAP
)
get_version()
(in
ResidueDatabaseIO
)
get()
(in
ResTypeSequence_ltAP
)
get()
(in
InvrotTreeAP
)
get_vertex()
(in
UpperEdgeGraph_T_core_conformation_PointGraphVertexData_core_conformation_PointGraphEdgeData_T
)
get()
(in
ResTypeSequence_ltCAP
)
get()
(in
InvrotTreeCAP
)
get_vertex_member_of_energy_sum_group()
(in
InteractionGraphBase
)
get()
(in
RestrictDesignToProteinDNAInterfaceAP
)
get()
(in
InvrotTreeNodeAP
)
get_vicinity_degree()
(in
AnchoredRefineMover
)
get()
(in
RestrictDesignToProteinDNAInterfaceCAP
)
get()
(in
InvrotTreeNodeBaseAP
)
get_vicinity_sampling()
(in
AnchoredRefineMover
)
get()
(in
RestrictDesignToProteinDNAInterfaceCreatorAP
)
get()
(in
InvrotTreeNodeBaseCAP
)
get_virt_id_to_subunit_chain()
(in
SymmData
)
get()
(in
RestrictDesignToProteinDNAInterfaceCreatorCAP
)
get()
(in
InvrotTreeNodeCAP
)
get_virt_id_to_subunit_num()
(in
SymmData
)
get()
(in
RotamerDNAHBondFilterAP
)
get()
(in
LigandConformerAP
)
get_virt_id_to_subunit_residue()
(in
SymmData
)
get()
(in
RotamerDNAHBondFilterCAP
)
get()
(in
LigandConformerCAP
)
get_virtual_connects()
(in
SymmData
)
get()
(in
SeparateDnaFromNonDnaAP
)
get()
(in
MatchConstraintFileInfoAP
)
get_virtual_coordinates()
(in
SymmData
)
get()
(in
SeparateDnaFromNonDnaCAP
)
get()
(in
MatchConstraintFileInfoCAP
)
get_virtual_id_to_num()
(in
SymmData
)
get()
(in
SeparateDnaFromNonDnaCreatorAP
)
get()
(in
MatchConstraintFileInfoListAP
)
get_virtual_num_to_id()
(in
SymmData
)
get()
(in
SeparateDnaFromNonDnaCreatorCAP
)
get()
(in
MatchConstraintFileInfoListCAP
)
get_visited()
(in
SmallMol
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
ResInteractionsAP
)
get_water_weight_grid()
(in
WaterWeightGridSet
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
ResInteractionsCAP
)
get_WaterAdductHBondPotential()
(in
ScoringManager
)
get()
(in
WatsonCrickRotamerCouplingsAP
)
get()
(in
SingleResidueInvrotTargetAP
)
get_watson_crick_base_pair_atoms()
(in
rosetta.core.chemical.rna._core_chemical_rna_
)
get()
(in
WatsonCrickRotamerCouplingsCAP
)
get()
(in
SingleResidueInvrotTargetCAP
)
get_WC_atom()
(in
rosetta.core.chemical.rna._core_chemical_rna_
)
get()
(in
WatsonCrickRotamerCouplingsCreatorAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get_wc_near_o2prime()
(in
RNA_DMS_LowResolutionPotential
)
get()
(in
WatsonCrickRotamerCouplingsCreatorCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get_weight()
(in
ScoreFunction
)
get()
(in
ConformerSwitchMoverAP
)
get()
(in
TheozymeInvrotTreeAP
)
get_weight()
(in
CircularSplineFunc
)
get()
(in
ConformerSwitchMoverCAP
)
get()
(in
TheozymeInvrotTreeCAP
)
get_weight()
(in
SplineFunc
)
get()
(in
ConformerSwitchMoverCreatorAP
)
get()
(in
BuriedUnsatisfiedPolarsCalculatorAP
)
get_weight()
(in
EvaluatedArchive
)
get()
(in
ConformerSwitchMoverCreatorCAP
)
get()
(in
BuriedUnsatisfiedPolarsCalculatorCAP
)
get_weight()
(in
PCS_data_per_lanthanides
)
get()
(in
DockMCMCycleAP
)
get()
(in
CatPiCalculatorAP
)
get_weight()
(in
PCS_file_data
)
get()
(in
DockMCMCycleCAP
)
get()
(in
CatPiCalculatorCAP
)
get_weight()
(in
PcsDataLanthanide
)
get()
(in
DockMCMProtocolAP
)
get()
(in
ChargeCalculatorAP
)
get_weight()
(in
PcsInputFile
)
get()
(in
DockMCMProtocolCAP
)
get()
(in
ChargeCalculatorCAP
)
get_weight()
(in
PCS_data_per_lanthanides_Ts1
)
get()
(in
DockMinMoverAP
)
get()
(in
ClashCountCalculatorAP
)
get_weight()
(in
PCS_file_data_Ts1
)
get()
(in
DockMinMoverCAP
)
get()
(in
ClashCountCalculatorCAP
)
get_weight()
(in
PCS_data_per_lanthanides_Ts2
)
get()
(in
DockSetupMoverAP
)
get()
(in
DecomposeAndReweightEnergiesCalculatorAP
)
get_weight()
(in
PCS_file_data_Ts2
)
get()
(in
DockSetupMoverCAP
)
get()
(in
DecomposeAndReweightEnergiesCalculatorCAP
)
get_weight()
(in
PCS_data_per_lanthanides_Ts3
)
get()
(in
DockSetupMoverCreatorAP
)
get()
(in
EmptyVertexDataAP
)
get_weight()
(in
PCS_file_data_Ts3
)
get()
(in
DockSetupMoverCreatorCAP
)
get()
(in
EmptyVertexDataCAP
)
get_weight()
(in
PCS_data_per_lanthanides_Ts4
)
get()
(in
DockTaskFactoryAP
)
get()
(in
EnergiesDataAP
)
get_weight()
(in
PCS_file_data_Ts4
)
get()
(in
DockTaskFactoryCAP
)
get()
(in
EnergiesDataCAP
)
get_weighted_energy()
(in
PDInteractionGraph
)
get()
(in
DockingEnsembleAP
)
get()
(in
FragQualCalculatorAP
)
get_weighted_energy_with_higher_indexed_nodes()
(in
PDNode
)
get()
(in
DockingEnsembleCAP
)
get()
(in
FragQualCalculatorCAP
)
get_weights()
(in
FragmentScoreManager
)
get()
(in
DockingEnsemblePrepackProtocolAP
)
get()
(in
HPatchCalculatorAP
)
get_well_depth()
(in
LinearPenaltyFunction
)
get()
(in
DockingEnsemblePrepackProtocolCAP
)
get()
(in
HPatchCalculatorCAP
)
get_work_unit()
(in
WorkUnitList
)
get()
(in
DockingHighResAP
)
get()
(in
InterGroupNeighborsCalculatorAP
)
get_work_unit_clone()
(in
WorkUnitList
)
get()
(in
DockingHighResCAP
)
get()
(in
InterGroupNeighborsCalculatorCAP
)
get_wt_averaged_score_components()
(in
ddGMover
)
get()
(in
DockingHighResFilterAP
)
get()
(in
MetricValueGetter
)
get_wt_averaged_totals()
(in
ddGMover
)
get()
(in
DockingHighResFilterCAP
)
get()
(in
MetricValueGetterAP
)
get_wt_min_score_components()
(in
ddGMover
)
get()
(in
DockingHighResLegacyAP
)
get()
(in
MetricValueGetterCAP
)
get_wt_min_totals()
(in
ddGMover
)
get()
(in
DockingHighResLegacyCAP
)
get()
(in
NeighborhoodByDistanceCalculatorAP
)
get_wu_type()
(in
WorkUnitBase
)
get()
(in
DockingInitialPerturbationAP
)
get()
(in
NeighborhoodByDistanceCalculatorCAP
)
get_x()
(in
VirtualCoordinate
)
get()
(in
DockingInitialPerturbationCAP
)
get()
(in
NeighborsByDistanceCalculatorAP
)
get_X_all()
(in
PCS_data
)
get()
(in
DockingInitialPerturbationCreatorAP
)
get()
(in
NeighborsByDistanceCalculatorCAP
)
get_X_all()
(in
PcsDataCenter
)
get()
(in
DockingInitialPerturbationCreatorCAP
)
get()
(in
NonlocalContactsCalculatorAP
)
get_X_all()
(in
PCS_data_Ts1
)
get()
(in
DockingLowResAP
)
get()
(in
NonlocalContactsCalculatorCAP
)
get_X_all()
(in
PCS_data_Ts2
)
get()
(in
DockingLowResCAP
)
get()
(in
NumberHBondsCalculatorAP
)
get_X_all()
(in
PCS_data_Ts3
)
get()
(in
DockingLowResEnsembleAP
)
get()
(in
NumberHBondsCalculatorCAP
)
get_X_all()
(in
PCS_data_Ts4
)
get()
(in
DockingLowResEnsembleCAP
)
get()
(in
PackstatCalculatorAP
)
get_x_middle()
(in
LinearPenaltyFunction
)
get()
(in
DockingLowResFilterAP
)
get()
(in
PackstatCalculatorCAP
)
get_xform_score_BB_BB()
(in
MotifHashManager
)
get()
(in
DockingLowResFilterCAP
)
get()
(in
PiPiCalculatorAP
)
get_xform_score_BB_PH()
(in
MotifHashManager
)
get()
(in
DockingPrepackProtocolAP
)
get()
(in
PiPiCalculatorCAP
)
get_xform_score_BB_PO()
(in
MotifHashManager
)
get()
(in
DockingPrepackProtocolCAP
)
get()
(in
ResidueDecompositionByChainCalculatorAP
)
get_xform_score_frags()
(in
MotifHashManager
)
get()
(in
DockingProtocolAP
)
get()
(in
ResidueDecompositionByChainCalculatorCAP
)
get_xform_score_PH_PO()
(in
MotifHashManager
)
get()
(in
DockingProtocolCAP
)
get()
(in
ResidueDecompositionCalculatorAP
)
get_xform_score_SC_BB()
(in
MotifHashManager
)
get()
(in
DockingProtocolCreatorAP
)
get()
(in
ResidueDecompositionCalculatorCAP
)
get_xform_score_SC_SC()
(in
MotifHashManager
)
get()
(in
DockingProtocolCreatorCAP
)
get()
(in
RotamerBoltzCalculatorAP
)
get_xform_stats()
(in
rosetta.protocols.sic_dock._protocols_sic_dock_
)
get()
(in
DockingSlideIntoContactAP
)
get()
(in
RotamerBoltzCalculatorCAP
)
get_xyz()
(in
RigidBodyStepWiseSamplerWithResidueAlternatives
)
get()
(in
DockingSlideIntoContactCAP
)
get()
(in
RotamerRecoveryAP
)
get_y()
(in
VirtualCoordinate
)
get()
(in
EllipsoidalRandomizationMoverAP
)
get()
(in
RotamerRecoveryCAP
)
get_Y_all()
(in
PCS_data
)
get()
(in
EllipsoidalRandomizationMoverCAP
)
get()
(in
SHOBuriedUnsatisfiedPolarsCalculatorAP
)
get_Y_all()
(in
PcsDataCenter
)
get()
(in
FaDockingSlideIntoContactAP
)
get()
(in
SHOBuriedUnsatisfiedPolarsCalculatorCAP
)
get_Y_all()
(in
PCS_data_Ts1
)
get()
(in
FaDockingSlideIntoContactCAP
)
get()
(in
SaltBridgeCalculatorAP
)
get_Y_all()
(in
PCS_data_Ts2
)
get()
(in
InterfaceSidechainMinMoverAP
)
get()
(in
SaltBridgeCalculatorCAP
)
get_Y_all()
(in
PCS_data_Ts3
)
get()
(in
InterfaceSidechainMinMoverCAP
)
get()
(in
SemiExplicitWaterUnsatisfiedPolarsCalculatorAP
)
get_Y_all()
(in
PCS_data_Ts4
)
get()
(in
RigidBodyInfoAP
)
get()
(in
SemiExplicitWaterUnsatisfiedPolarsCalculatorCAP
)
get_y_axis()
(in
rosetta.core.scoring.dna._core_scoring_dna_
)
get()
(in
RigidBodyInfoCAP
)
get()
(in
SequenceComparisonAP
)
get_y_axis_atoms()
(in
rosetta.core.scoring.dna._core_scoring_dna_
)
get()
(in
SidechainMinMoverAP
)
get()
(in
SequenceComparisonCAP
)
get_Z_all()
(in
PCS_data
)
get()
(in
SidechainMinMoverCAP
)
get()
(in
SingletonBase_T_core_scoring_geometric_solvation_GridInfo_TAP
)
get_Z_all()
(in
PcsDataCenter
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
SingletonBase_T_core_scoring_geometric_solvation_GridInfo_TCAP
)
get_Z_all()
(in
PCS_data_Ts1
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
SingletonBase_T_core_scoring_geometric_solvation_WaterWeightGridSet_TAP
)
get_Z_all()
(in
PCS_data_Ts2
)
get()
(in
TemperedDockingAP
)
get()
(in
SingletonBase_T_core_scoring_geometric_solvation_WaterWeightGridSet_TCAP
)
get_Z_all()
(in
PCS_data_Ts3
)
get()
(in
TemperedDockingCAP
)
get()
(in
SurfaceCalculatorAP
)
get_Z_all()
(in
PCS_data_Ts4
)
get()
(in
TemperedDockingCreatorAP
)
get()
(in
SurfaceCalculatorCAP
)
get_z_axis()
(in
rosetta.core.scoring.dna._core_scoring_dna_
)
get()
(in
TemperedDockingCreatorCAP
)
get()
(in
AddGood2BPairEnergyRotamersAP
)
get_ZAP_espGrid_values()
(in
ElectrostaticpotentialGrid
)
get()
(in
MPDockingMoverAP
)
get()
(in
AddGood2BPairEnergyRotamersCAP
)
get_ZAP_espGrid_values_with_type()
(in
ElectrostaticpotentialGrid
)
get()
(in
MPDockingMoverCAP
)
get()
(in
RigidBodyMoveBaseRSOAP
)
get_zeta_cutoff()
(in
RNA_LowResolutionPotential
)
get()
(in
MPDockingMoverCreatorAP
)
get()
(in
RigidBodyMoveBaseRSOCAP
)
getAANeighborOffsets()
(in
AminoAcidNeighborSparseMatrix_T_float_T
)
get()
(in
MPDockingMoverCreatorCAP
)
get()
(in
RigidBodyMoveRSOAP
)
getAllFiberData()
(in
FiberDiffraction
)
get()
(in
MPDockingSetupMoverAP
)
get()
(in
RigidBodyMoveRSOCAP
)
getAtomMask()
(in
ElectronDensity
)
get()
(in
MPDockingSetupMoverCAP
)
get()
(in
SpecialRotamerRSOAP
)
GetAtoms()
(in
MolecularSurfaceCalculator
)
get()
(in
MPDockingSetupMoverCreatorAP
)
get()
(in
SpecialRotamerRSOCAP
)
getAVG()
(in
rosetta.protocols.sparta._protocols_sparta_
)
get()
(in
MPDockingSetupMoverCreatorCAP
)
get()
(in
AlignedThreadOperationAP
)
getBondAngle()
(in
PDB
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
AlignedThreadOperationCAP
)
getBounds()
(in
PocketGrid
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
AlignedThreadOperationCreatorAP
)
getCachedScore()
(in
ElectronDensity
)
get()
(in
SaneDockingProtocolAP
)
get()
(in
AlignedThreadOperationCreatorCAP
)
getChi1()
(in
PDB
)
get()
(in
SaneDockingProtocolCAP
)
get()
(in
ConservativeDesignOperationAP
)
getChi2()
(in
PDB
)
get()
(in
AddAssemblyConstraintsAP
)
get()
(in
ConservativeDesignOperationCAP
)
getCoM()
(in
ElectronDensity
)
get()
(in
AddAssemblyConstraintsCAP
)
get()
(in
CrystalContactsOperationAP
)
getConfidence()
(in
ANN
)
get()
(in
AssembleLinkerMoverAP
)
get()
(in
CrystalContactsOperationCAP
)
getContent()
(in
SmallMol
)
get()
(in
AssembleLinkerMoverCAP
)
get()
(in
CrystalContactsOperationCreatorAP
)
getCoordinateTransformation()
(in
GaussianRBSegmentMover
)
get()
(in
CombineChainsMoverAP
)
get()
(in
CrystalContactsOperationCreatorCAP
)
getCoordinateTransformation()
(in
HelicalGaussianMover
)
get()
(in
CombineChainsMoverCAP
)
get()
(in
DatabaseThreadAP
)
getCoordinateTransformation()
(in
RBSegmentMover
)
get()
(in
PostDockAssemblyScorerAP
)
get()
(in
DatabaseThreadCAP
)
getCoordinateTransformation()
(in
SequenceShiftMover
)
get()
(in
PostDockAssemblyScorerCAP
)
get()
(in
DatabaseThreadCreatorAP
)
getCoordinateTransformation()
(in
StrandTwistingMover
)
get()
(in
BfactorFittingMoverAP
)
get()
(in
DatabaseThreadCreatorCAP
)
getCutoff()
(in
ScoringSecMatchRPE
)
get()
(in
BfactorFittingMoverCAP
)
get()
(in
DesignAroundOperationAP
)
getData()
(in
GDB
)
get()
(in
BfactorFittingMoverCreatorAP
)
get()
(in
DesignAroundOperationCAP
)
getDensityMap()
(in
rosetta.core.scoring.electron_density._core_scoring_electron_density_
)
get()
(in
BfactorFittingMoverCreatorCAP
)
get()
(in
DesignAroundOperationCreatorAP
)
getDensityMap_legacy()
(in
rosetta.core.scoring.electron_density._core_scoring_electron_density_
)
get()
(in
BfactorMultifuncAP
)
get()
(in
DesignAroundOperationCreatorCAP
)
getDiff()
(in
rosetta.protocols.sparta._protocols_sparta_
)
get()
(in
BfactorMultifuncCAP
)
get()
(in
DockingNoRepack1AP
)
getDihedralAngle()
(in
PDB
)
get()
(in
DensityMorphingMoverAP
)
get()
(in
DockingNoRepack1CAP
)
getDist()
(in
PDB
)
get()
(in
DensityMorphingMoverCAP
)
get()
(in
DockingNoRepack2AP
)
GetDots()
(in
MolecularSurfaceCalculator
)
get()
(in
DensityMorphingMoverCreatorAP
)
get()
(in
DockingNoRepack2CAP
)
getEffectiveBfactor()
(in
ElectronDensity
)
get()
(in
DensityMorphingMoverCreatorCAP
)
get()
(in
DsspDesignOperationAP
)
getEffOrigin()
(in
ElectronDensity
)
get()
(in
ReportFSCAP
)
get()
(in
DsspDesignOperationCAP
)
getEntry()
(in
GDB
)
get()
(in
ReportFSCCAP
)
get()
(in
DsspDesignOperationCreatorAP
)
getEntry()
(in
PDB
)
get()
(in
ReportFSCCreatorAP
)
get()
(in
DsspDesignOperationCreatorCAP
)
getEntryCount()
(in
GDB
)
get()
(in
ReportFSCCreatorCAP
)
get()
(in
ImportUnboundRotamersOperationAP
)
getFiberDiffractionData()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
get()
(in
ScaleMapIntensitiesAP
)
get()
(in
ImportUnboundRotamersOperationCAP
)
getFiberDiffractionData_legacy()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
get()
(in
ScaleMapIntensitiesCAP
)
get()
(in
ImportUnboundRotamersOperationCreatorAP
)
getField()
(in
PDB
)
get()
(in
ScaleMapIntensitiesCreatorAP
)
get()
(in
ImportUnboundRotamersOperationCreatorCAP
)
getFragSet()
(in
FragmentPicker
)
get()
(in
ScaleMapIntensitiesCreatorCAP
)
get()
(in
InteractingRotamerExplosionAP
)
getFSC()
(in
ElectronDensity
)
get()
(in
SetupForDensityScoringMoverAP
)
get()
(in
InteractingRotamerExplosionCAP
)
getGrid()
(in
ElectronDensity
)
get()
(in
SetupForDensityScoringMoverCAP
)
get()
(in
InteractingRotamerExplosionCreatorAP
)
gethash()
(in
LoopHashLibrary
)
get()
(in
SetupForDensityScoringMoverCreatorAP
)
get()
(in
InteractingRotamerExplosionCreatorCAP
)
getHBondDist()
(in
PDB
)
get()
(in
SetupForDensityScoringMoverCreatorCAP
)
get()
(in
InterfaceTaskOperationAP
)
getInfoLine()
(in
PhenixInterface
)
get()
(in
AutoCutDataAP
)
get()
(in
InterfaceTaskOperationCAP
)
getIntensities()
(in
ElectronDensity
)
get()
(in
AutoCutDataCAP
)
get()
(in
JointSequenceOperationAP
)
getIntensities()
(in
FiberDiffraction
)
get()
(in
AutoCutDataCreatorAP
)
get()
(in
JointSequenceOperationCAP
)
getK()
(in
KofNConstraint
)
get()
(in
AutoCutDataCreatorCAP
)
get()
(in
JointSequenceOperationCreatorAP
)
getLargestClusterSize()
(in
CClusterSet
)
get()
(in
ClientMoverAP
)
get()
(in
JointSequenceOperationCreatorCAP
)
getLargestClusterSize()
(in
PClusterSet
)
get()
(in
ClientMoverCAP
)
get()
(in
LimitAromaChi2OperationAP
)
getListNames()
(in
DesignContrast
)
get()
(in
CoMTrackerCMAP
)
get()
(in
LimitAromaChi2OperationCAP
)
getMatrixPointer()
(in
AminoAcidNeighborSparseMatrix_T_float_T
)
get()
(in
CoMTrackerCMCAP
)
get()
(in
LimitAromaChi2OperationCreatorAP
)
getMax()
(in
ElectronDensity
)
get()
(in
CoMTrackerCMCreatorAP
)
get()
(in
LimitAromaChi2OperationCreatorCAP
)
GetMaximumElectrons()
(in
Bond
)
get()
(in
CoMTrackerCMCreatorCAP
)
get()
(in
LimitAromaChi2_RotamerSetOperationAP
)
getMean()
(in
ElectronDensity
)
get()
(in
DofUnlockAP
)
get()
(in
LimitAromaChi2_RotamerSetOperationCAP
)
getMin()
(in
ElectronDensity
)
get()
(in
DofUnlockCAP
)
get()
(in
LinkResiduesAP
)
GetMinimumElectrons()
(in
Bond
)
get()
(in
EXCN_Env_PassportAP
)
get()
(in
LinkResiduesCAP
)
getMLweight()
(in
rosetta.core.util._core_util_
)
get()
(in
EXCN_Env_PassportCAP
)
get()
(in
LinkResiduesCreatorAP
)
getMLweight_cart()
(in
rosetta.core.util._core_util_
)
get()
(in
EXCN_Env_Security_ExceptionAP
)
get()
(in
LinkResiduesCreatorCAP
)
GetMostStableType()
(in
PossibleAtomTypesForAtom
)
get()
(in
EXCN_Env_Security_ExceptionCAP
)
get()
(in
ModifyAnnealerAP
)
getName()
(in
Tag
)
get()
(in
EnvClaimBrokerAP
)
get()
(in
ModifyAnnealerCAP
)
getNeighbors()
(in
DesignContrast
)
get()
(in
EnvClaimBrokerCAP
)
get()
(in
ModifyAnnealerCreatorAP
)
getNetClusterSize()
(in
CClusterSet
)
get()
(in
EnvMoverAP
)
get()
(in
ModifyAnnealerCreatorCAP
)
getNetClusterSize()
(in
PClusterSet
)
get()
(in
EnvMoverCAP
)
get()
(in
MutationSetDesignOperationAP
)
getNumberMissCS()
(in
ANN
)
get()
(in
EnvMoverCreatorAP
)
get()
(in
MutationSetDesignOperationCAP
)
GetNumberOfElectrons()
(in
Bond
)
get()
(in
EnvMoverCreatorCAP
)
get()
(in
PreventChainFromRepackingOperationAP
)
GetNumberPossibleTypes()
(in
PossibleAtomTypesForAtom
)
get()
(in
EnvironmentAP
)
get()
(in
PreventChainFromRepackingOperationCAP
)
getNumDerivH()
(in
ElectronDensity
)
get()
(in
EnvironmentCAP
)
get()
(in
PreventChainFromRepackingOperationCreatorAP
)
getNumStatesPerAAPerBB()
(in
FlexbbNode
)
get()
(in
ProtectedConformationAP
)
get()
(in
PreventChainFromRepackingOperationCreatorCAP
)
getNVals()
(in
FiberDiffraction
)
get()
(in
ProtectedConformationCAP
)
get()
(in
PreventResiduesFromRepackingOperationAP
)
getOmega()
(in
PDB
)
get()
(in
ScriptCMAP
)
get()
(in
PreventResiduesFromRepackingOperationCAP
)
getOneAAName()
(in
PDB
)
get()
(in
ScriptCMCAP
)
get()
(in
PreventResiduesFromRepackingOperationCreatorAP
)
getOptions()
(in
Tag
)
get()
(in
ScriptCMCreatorAP
)
get()
(in
PreventResiduesFromRepackingOperationCreatorCAP
)
getOrbitalShift()
(in
PDB
)
get()
(in
ScriptCMCreatorCAP
)
get()
(in
ProteinCoreAP
)
getOrigin()
(in
ElectronDensity
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
ProteinCoreCAP
)
getParent()
(in
Tag
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
ProteinCoreFilterCreatorAP
)
getPdbCodes()
(in
DesignContrast
)
get()
(in
ClaimStrengthAP
)
get()
(in
ProteinCoreFilterCreatorCAP
)
getPdbNames()
(in
DesignContrast
)
get()
(in
ClaimStrengthCAP
)
get()
(in
ProteinInterfaceDesignOperationAP
)
getPhaseError()
(in
ElectronDensity
)
get()
(in
CutBiasClaimAP
)
get()
(in
ProteinInterfaceDesignOperationCAP
)
getPhenixInterface()
(in
rosetta.core.scoring.cryst._core_scoring_cryst_
)
get()
(in
CutBiasClaimCAP
)
get()
(in
ProteinInterfaceDesignOperationCreatorAP
)
getPhi()
(in
PDB
)
get()
(in
CutBiasElementAP
)
get()
(in
ProteinInterfaceDesignOperationCreatorCAP
)
getPose()
(in
GeneralEvent
)
get()
(in
CutBiasElementCAP
)
get()
(in
ReadResfileFromDBAP
)
getPoseExtraScore()
(in
rosetta.core.pose._core_pose_
)
get()
(in
CutElementAP
)
get()
(in
ReadResfileFromDBCAP
)
GetPossibleTypesForAtom()
(in
rosetta.core.chemical.gasteiger._core_chemical_gasteiger_
)
get()
(in
CutElementCAP
)
get()
(in
ReadResfileFromDBCreatorAP
)
GetPropertyName()
(in
GasteigerAtomTypeData
)
get()
(in
DOFElementAP
)
get()
(in
ReadResfileFromDBCreatorCAP
)
getPsi()
(in
PDB
)
get()
(in
DOFElementCAP
)
get()
(in
ResidueProbDesignOperationAP
)
getR()
(in
PhenixInterface
)
get()
(in
EnvClaimAP
)
get()
(in
ResidueProbDesignOperationCAP
)
getRandom()
(in
mt19937_RG
)
get()
(in
EnvClaimCAP
)
get()
(in
RestrictByCalculatorsOperationAP
)
getRandom()
(in
standard_RG
)
get()
(in
EnvLabelSelectorAP
)
get()
(in
RestrictByCalculatorsOperationCAP
)
getRandom()
(in
uniform_RG
)
get()
(in
EnvLabelSelectorCAP
)
get()
(in
RestrictByCalculatorsOperationCreatorAP
)
GetRBDOFValues
(in
rosetta.protocols.matdes._protocols_matdes_
)
get()
(in
JumpClaimAP
)
get()
(in
RestrictByCalculatorsOperationCreatorCAP
)
GetRBDOFValuesAP
(in
rosetta.protocols.matdes._protocols_matdes_
)
get()
(in
JumpClaimCAP
)
get()
(in
RestrictChainToRepackingOperationAP
)
GetRBDOFValuesCAP
(in
rosetta.protocols.matdes._protocols_matdes_
)
get()
(in
JumpElementAP
)
get()
(in
RestrictChainToRepackingOperationCAP
)
GetRBDOFValuesCreator
(in
rosetta.protocols.matdes._protocols_matdes_
)
get()
(in
JumpElementCAP
)
get()
(in
RestrictChainToRepackingOperationCreatorAP
)
GetRBDOFValuesCreatorAP
(in
rosetta.protocols.matdes._protocols_matdes_
)
get()
(in
ResidueElementAP
)
get()
(in
RestrictChainToRepackingOperationCreatorCAP
)
GetRBDOFValuesCreatorCAP
(in
rosetta.protocols.matdes._protocols_matdes_
)
get()
(in
ResidueElementCAP
)
get()
(in
RestrictConservedLowDdgOperationAP
)
getReciprocalRs()
(in
FiberDiffraction
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
RestrictConservedLowDdgOperationCAP
)
getRecordCollection()
(in
Field
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
RestrictConservedLowDdgOperationCreatorAP
)
getRelaxResidues()
(in
PocketGrid
)
get()
(in
TorsionClaimAP
)
get()
(in
RestrictConservedLowDdgOperationCreatorCAP
)
getResidName()
(in
GDB
)
get()
(in
TorsionClaimCAP
)
get()
(in
RestrictIdentitiesAtAlignedPositionsOperationAP
)
getResidueRange()
(in
RBSegmentMover
)
get()
(in
VirtResClaimAP
)
get()
(in
RestrictIdentitiesAtAlignedPositionsOperationCAP
)
getResolution()
(in
ElectronDensity
)
get()
(in
VirtResClaimCAP
)
get()
(in
RestrictIdentitiesAtAlignedPositionsOperationCreatorAP
)
getResolutionBins()
(in
ElectronDensity
)
get()
(in
XYZClaimAP
)
get()
(in
RestrictIdentitiesAtAlignedPositionsOperationCreatorCAP
)
GetResults()
(in
MolecularSurfaceCalculator
)
get()
(in
XYZClaimCAP
)
get()
(in
RestrictIdentitiesOperationAP
)
getRfree()
(in
PhenixInterface
)
get()
(in
EnzdesBaseProtocolAP
)
get()
(in
RestrictIdentitiesOperationCAP
)
getRMS()
(in
rosetta.protocols.sparta._protocols_sparta_
)
get()
(in
EnzdesBaseProtocolCAP
)
get()
(in
RestrictIdentitiesOperationCreatorAP
)
getRSCC()
(in
ElectronDensity
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
get()
(in
RestrictIdentitiesOperationCreatorCAP
)
getScore()
(in
PhenixInterface
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
get()
(in
RestrictInterGroupVectorOperationAP
)
getScore()
(in
SetupForDensityScoringMover
)
get()
(in
AlignEvaluatorAP
)
get()
(in
RestrictInterGroupVectorOperationCAP
)
getScoreAndDerivs()
(in
PhenixInterface
)
get()
(in
AlignEvaluatorCAP
)
get()
(in
RestrictInterGroupVectorOperationCreatorAP
)
getScoreWindowContext()
(in
ElectronDensity
)
get()
(in
EvaluatorCreatorAP
)
get()
(in
RestrictInterGroupVectorOperationCreatorCAP
)
getSCscaling()
(in
ElectronDensity
)
get()
(in
EvaluatorCreatorCAP
)
get()
(in
RestrictNativeResiduesOperationAP
)
GetSDAltFileID()
(in
Bond
)
get()
(in
EvaluatorFactoryAP
)
get()
(in
RestrictNativeResiduesOperationCAP
)
GetSDFileID()
(in
Bond
)
get()
(in
EvaluatorFactoryCAP
)
get()
(in
RestrictNativeResiduesOperationCreatorAP
)
getSecStruct()
(in
DesignContrast
)
get()
(in
MetaPoseEvaluatorAP
)
get()
(in
RestrictNativeResiduesOperationCreatorCAP
)
getSeed()
(in
mt19937_RG
)
get()
(in
MetaPoseEvaluatorCAP
)
get()
(in
RestrictNonSurfaceToRepackingOperationAP
)
getSeed()
(in
standard_RG
)
get()
(in
PCAAP
)
get()
(in
RestrictNonSurfaceToRepackingOperationCAP
)
getSeed()
(in
uniform_RG
)
get()
(in
PCACAP
)
get()
(in
RestrictNonSurfaceToRepackingOperationCreatorAP
)
getSigAxisR()
(in
RBSegment
)
get()
(in
PoseEvaluatorAP
)
get()
(in
RestrictNonSurfaceToRepackingOperationCreatorCAP
)
getSigAxisT()
(in
RBSegment
)
get()
(in
PoseEvaluatorCAP
)
get()
(in
RestrictOperationsBaseAP
)
getSigOffAxisR()
(in
RBSegment
)
get()
(in
SingleValuePoseEvaluator_SSizeAP
)
get()
(in
RestrictOperationsBaseCAP
)
getSigOffAxisT()
(in
RBSegment
)
get()
(in
SingleValuePoseEvaluator_SSizeCAP
)
get()
(in
RestrictResiduesToRepackingOperationAP
)
getSlashChar()
(in
ANN
)
get()
(in
SingleValuePoseEvaluator_SizeAP
)
get()
(in
RestrictResiduesToRepackingOperationCAP
)
getSTD()
(in
rosetta.protocols.sparta._protocols_sparta_
)
get()
(in
SingleValuePoseEvaluator_SizeCAP
)
get()
(in
RestrictResiduesToRepackingOperationCreatorAP
)
getStdev()
(in
ElectronDensity
)
get()
(in
SingleValuePoseEvaluator_T_double_TAP
)
get()
(in
RestrictResiduesToRepackingOperationCreatorCAP
)
getStubByName()
(in
StubGenerator
)
get()
(in
SingleValuePoseEvaluator_T_double_TCAP
)
get()
(in
RestrictToAlignedSegmentsOperationAP
)
getsymmOps()
(in
ElectronDensity
)
get()
(in
SingleValuePoseEvaluator_T_long_int_TAP
)
get()
(in
RestrictToAlignedSegmentsOperationCAP
)
getTag()
(in
Tag
)
get()
(in
SingleValuePoseEvaluator_T_long_int_TCAP
)
get()
(in
RestrictToAlignedSegmentsOperationCreatorAP
)
getTags()
(in
Tag
)
get()
(in
SingleValuePoseEvaluator_T_long_unsigned_int_TAP
)
get()
(in
RestrictToAlignedSegmentsOperationCreatorCAP
)
getThreeAAName()
(in
PDB
)
get()
(in
SingleValuePoseEvaluator_T_long_unsigned_int_TCAP
)
get()
(in
RestrictToCDRH3LoopAP
)
GetTime()
(in
Timer
)
get()
(in
SingletonBase_T_protocols_evaluation_EvaluatorFactory_TAP
)
get()
(in
RestrictToCDRH3LoopCAP
)
getTotalMemoryUsage()
(in
Graph
)
get()
(in
SingletonBase_T_protocols_evaluation_EvaluatorFactory_TCAP
)
get()
(in
RestrictToCDRH3LoopCreatorAP
)
getTotalMemoryUsage()
(in
InteractionGraphBase
)
get()
(in
TimeEvaluatorAP
)
get()
(in
RestrictToCDRH3LoopCreatorCAP
)
getTransform()
(in
ElectronDensity
)
get()
(in
TimeEvaluatorCAP
)
get()
(in
RestrictToInterfaceAP
)
getUseDensityInMinimizer()
(in
ElectronDensity
)
get()
(in
BasePairStepAP
)
get()
(in
RestrictToInterfaceCAP
)
getUseExactDerivatives()
(in
ElectronDensity
)
get()
(in
BasePairStepCAP
)
get()
(in
RestrictToInterfaceCreatorAP
)
getValueFrom()
(in
Field
)
get()
(in
BasePairStepLibraryAP
)
get()
(in
RestrictToInterfaceCreatorCAP
)
getValues()
(in
CentroidScatter
)
get()
(in
BasePairStepLibraryCAP
)
get()
(in
RestrictToInterfaceOperationAP
)
getValues()
(in
FAScatter
)
get()
(in
BasePairStepSequenceAP
)
get()
(in
RestrictToInterfaceOperationCAP
)
getWindow()
(in
ElectronDensity
)
get()
(in
BasePairStepSequenceCAP
)
get()
(in
RestrictToInterfaceOperationCreatorAP
)
getxform()
(in
rosetta.core.fragment._core_fragment_
)
get()
(in
BasePairTypeAP
)
get()
(in
RestrictToInterfaceOperationCreatorCAP
)
getxform()
(in
rosetta.protocols.sic_dock._protocols_sic_dock_
)
get()
(in
BasePairTypeCAP
)
get()
(in
RestrictToInterfaceVectorOperationAP
)
ghost_loops()
(in
StepWiseProteinModelerOptions
)
get()
(in
ChunkSetAP
)
get()
(in
RestrictToInterfaceVectorOperationCAP
)
global2local()
(in
Stub
)
get()
(in
ChunkSetCAP
)
get()
(in
RestrictToInterfaceVectorOperationCreatorAP
)
global_auto_rescale()
(in
SequenceProfile
)
get()
(in
FragmentLibraryAP
)
get()
(in
RestrictToInterfaceVectorOperationCreatorCAP
)
global_loop_rmsd()
(in
rosetta.protocols.antibody._protocols_antibody_
)
get()
(in
FragmentLibraryCAP
)
get()
(in
RestrictToLoopsAP
)
global_loop_rmsd()
(in
AntibodyModeler
)
get()
(in
FullAtomRNA_FragmentsAP
)
get()
(in
RestrictToLoopsAndNeighborsAP
)
global_offset()
(in
FragSet
)
get()
(in
FullAtomRNA_FragmentsCAP
)
get()
(in
RestrictToLoopsAndNeighborsCAP
)
global_optimize()
(in
StepWiseProteinModelerOptions
)
get()
(in
MultipleDomainMoverAP
)
get()
(in
RestrictToLoopsAndNeighborsCreatorAP
)
global_orientation_from_frame3()
(in
LigandConformer
)
get()
(in
MultipleDomainMoverCAP
)
get()
(in
RestrictToLoopsAndNeighborsCreatorCAP
)
global_pos1()
(in
JumpClaim
)
get()
(in
RNA_ChunkLibraryAP
)
get()
(in
RestrictToLoopsCAP
)
global_pos2()
(in
JumpClaim
)
get()
(in
RNA_ChunkLibraryCAP
)
get()
(in
RestrictToLoopsCreatorAP
)
global_position()
(in
BBClaim
)
get()
(in
RNA_DeNovoProtocolAP
)
get()
(in
RestrictToLoopsCreatorCAP
)
global_rotid_start_for_moltenres_in_bbconf()
(in
FlexbbRotamerSets
)
get()
(in
RNA_DeNovoProtocolCAP
)
get()
(in
RestrictToMoveMapChiOperationAP
)
global_sample_res_list()
(in
StepWiseWorkingParameters
)
get()
(in
RNA_FragmentMoverAP
)
get()
(in
RestrictToMoveMapChiOperationCAP
)
glu_corrections()
(in
rosetta.protocols.make_rot_lib._protocols_make_rot_lib_
)
get()
(in
RNA_FragmentMoverCAP
)
get()
(in
RestrictToNeighborhoodOperationAP
)
GLYCOSIDE
(in
rosetta
)
get()
(in
RNA_FragmentsAP
)
get()
(in
RestrictToNeighborhoodOperationCAP
)
GLYCOSIDE
(in
rosetta.core.chemical
)
get()
(in
RNA_FragmentsCAP
)
get()
(in
RestrictToNeighborhoodOperationCreatorAP
)
GLYCOSIDE
(in
rosetta.core.chemical._core_chemical_
)
get()
(in
RNA_JumpLibraryAP
)
get()
(in
RestrictToNeighborhoodOperationCreatorCAP
)
GLYCOSIDE
(in
ResidueProperty
)
get()
(in
RNA_JumpLibraryCAP
)
get()
(in
RestrictToTerminiOperationAP
)
gmax_cutoff_for_convergence()
(in
MinimizerOptions
)
get()
(in
RNA_LoopCloserAP
)
get()
(in
RestrictToTerminiOperationCAP
)
gnl_R_qfht()
(in
rosetta.core.scoring.fiber_diffraction._core_scoring_fiber_diffraction_
)
get()
(in
RNA_LoopCloserCAP
)
get()
(in
RestrictToTerminiOperationCreatorAP
)
go()
(in
BOINCJobDistributor
)
get()
(in
RNA_MinimizerAP
)
get()
(in
RestrictToTerminiOperationCreatorCAP
)
go()
(in
FileSystemJobDistributor
)
get()
(in
RNA_MinimizerCAP
)
get()
(in
RetrieveStoredTaskOperationAP
)
go()
(in
JobDistributor
)
get()
(in
RNA_PairingAP
)
get()
(in
RetrieveStoredTaskOperationCAP
)
go()
(in
MPIFileBufJobDistributor
)
get()
(in
RNA_PairingCAP
)
get()
(in
RetrieveStoredTaskOperationCreatorAP
)
go()
(in
MPIWorkPartitionJobDistributor
)
get()
(in
RNA_PairingTemplateAP
)
get()
(in
RetrieveStoredTaskOperationCreatorCAP
)
go()
(in
MPIWorkPoolJobDistributor
)
get()
(in
RNA_PairingTemplateCAP
)
get()
(in
STMStoredTaskAP
)
go()
(in
MSDJobDistributor
)
get()
(in
RNA_RelaxerAP
)
get()
(in
STMStoredTaskCAP
)
go()
(in
ArchiveManager
)
get()
(in
RNA_RelaxerCAP
)
get()
(in
SelectByDeltaScoreOperationAP
)
go()
(in
MPIArchiveJobDistributor
)
get()
(in
RNA_SecStructInfoAP
)
get()
(in
SelectByDeltaScoreOperationCAP
)
go()
(in
MPI_LoopHashRefine_Emperor
)
get()
(in
RNA_SecStructInfoCAP
)
get()
(in
SelectByDeltaScoreOperationCreatorAP
)
go()
(in
MPI_LoopHashRefine_Master
)
get()
(in
RNA_StructureParametersAP
)
get()
(in
SelectByDeltaScoreOperationCreatorCAP
)
go()
(in
MPI_Refine_Emperor
)
get()
(in
RNA_StructureParametersCAP
)
get()
(in
SelectByDensityFitOperationAP
)
go()
(in
MPI_Refine_Master
)
get()
(in
TorsionSetAP
)
get()
(in
SelectByDensityFitOperationCAP
)
go()
(in
IterativeOptEDriver
)
get()
(in
TorsionSetCAP
)
get()
(in
SelectByDensityFitOperationCreatorAP
)
go()
(in
PointMutScanDriver
)
get()
(in
AtomAtomPairFeaturesAP
)
get()
(in
SelectByDensityFitOperationCreatorCAP
)
go()
(in
UnfoldedStateEnergyCalculatorJobDistributor
)
get()
(in
AtomAtomPairFeaturesCAP
)
get()
(in
SelectBySASAOperationAP
)
go()
(in
MPI_WorkUnitManager
)
get()
(in
AtomAtomPairFeaturesCreatorAP
)
get()
(in
SelectBySASAOperationCAP
)
go()
(in
MPI_WorkUnitManager_Slave
)
get()
(in
AtomAtomPairFeaturesCreatorCAP
)
get()
(in
SelectBySASAOperationCreatorAP
)
go()
(in
WorkUnitManager
)
get()
(in
AtomInResidueAtomInResiduePairFeaturesAP
)
get()
(in
SelectBySASAOperationCreatorCAP
)
goap
(in
ScoreType
)
get()
(in
AtomInResidueAtomInResiduePairFeaturesCAP
)
get()
(in
SelectResiduesWithinChainOperationAP
)
goap
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
AtomInResidueAtomInResiduePairFeaturesCreatorAP
)
get()
(in
SelectResiduesWithinChainOperationCAP
)
goap
(in
rosetta.core.scoring
)
get()
(in
AtomInResidueAtomInResiduePairFeaturesCreatorCAP
)
get()
(in
SelectResiduesWithinChainOperationCreatorAP
)
goap
(in
rosetta
)
get()
(in
AtomTypesFeaturesAP
)
get()
(in
SelectResiduesWithinChainOperationCreatorCAP
)
goap_angle
(in
ScoreType
)
get()
(in
AtomTypesFeaturesCAP
)
get()
(in
SeqprofConsensusOperationAP
)
goap_angle
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
AtomTypesFeaturesCreatorAP
)
get()
(in
SeqprofConsensusOperationCAP
)
goap_angle
(in
rosetta.core.scoring
)
get()
(in
AtomTypesFeaturesCreatorCAP
)
get()
(in
SeqprofConsensusOperationCreatorAP
)
goap_angle
(in
rosetta
)
get()
(in
BatchFeaturesAP
)
get()
(in
SeqprofConsensusOperationCreatorCAP
)
goap_dist
(in
ScoreType
)
get()
(in
BatchFeaturesCAP
)
get()
(in
SetIGTypeOperationAP
)
goap_dist
(in
rosetta.core.scoring._core_scoring_
)
get()
(in
BetaTurnDetectionAP
)
get()
(in
SetIGTypeOperationCAP
)
goap_dist
(in
rosetta.core.scoring
)
get()
(in
BetaTurnDetectionCAP
)
get()
(in
SetIGTypeOperationCreatorAP
)
goap_dist
(in
rosetta
)
get()
(in
BetaTurnDetectionFeaturesAP
)
get()
(in
SetIGTypeOperationCreatorCAP
)
GoapEnergy
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
get()
(in
BetaTurnDetectionFeaturesCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
GoapEnergyAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
get()
(in
BetaTurnDetectionFeaturesCreatorAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
GoapEnergyCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
get()
(in
BetaTurnDetectionFeaturesCreatorCAP
)
get()
(in
StoreCombinedStoredTasksMoverAP
)
GoapEnergyCreator
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
get()
(in
ChargeChargeFeaturesAP
)
get()
(in
StoreCombinedStoredTasksMoverCAP
)
GoapEnergyCreatorAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
get()
(in
ChargeChargeFeaturesCAP
)
get()
(in
StoreCombinedStoredTasksMoverCreatorAP
)
GoapEnergyCreatorCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
get()
(in
ChargeChargeFeaturesCreatorAP
)
get()
(in
StoreCombinedStoredTasksMoverCreatorCAP
)
GoapRsdType
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
get()
(in
ChargeChargeFeaturesCreatorCAP
)
get()
(in
StoreCompoundTaskMoverAP
)
GoapRsdTypeAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
get()
(in
DatabaseFilterAP
)
get()
(in
StoreCompoundTaskMoverCAP
)
GoapRsdTypeCAP
(in
rosetta.core.scoring.methods._core_scoring_methods_
)
get()
(in
DatabaseFilterCAP
)
get()
(in
StoreCompoundTaskMoverCreatorAP
)
gpu
(in
rosetta.basic
)
get()
(in
DatabaseJobInputterAP
)
get()
(in
StoreCompoundTaskMoverCreatorCAP
)
grab_main_chain_torsion_set_list()
(in
StepWiseProteinCCD_Closer
)
get()
(in
DatabaseJobInputterCAP
)
get()
(in
StoreTaskMoverAP
)
GrabAllCollector
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
)
get()
(in
DatabaseJobInputterCreatorAP
)
get()
(in
StoreTaskMoverCAP
)
GrabAllCollectorAP
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
)
get()
(in
DatabaseJobInputterCreatorCAP
)
get()
(in
StoreTaskMoverCreatorAP
)
GrabAllCollectorCAP
(in
rosetta.protocols.frag_picker._protocols_frag_picker_
)
get()
(in
DatabaseJobOutputterAP
)
get()
(in
StoreTaskMoverCreatorCAP
)
gradnorm()
(in
rosetta.numeric.crick_equations._numeric_crick_equations_
)
get()
(in
DatabaseJobOutputterCAP
)
get()
(in
ThreadSequenceOperationAP
)
graft()
(in
MatchGrafter
)
get()
(in
DatabaseJobOutputterCreatorAP
)
get()
(in
ThreadSequenceOperationCAP
)
graft_closed()
(in
rosetta.protocols.grafting._protocols_grafting_
)
get()
(in
DatabaseJobOutputterCreatorCAP
)
get()
(in
ThreadSequenceOperationCreatorAP
)
graft_loop()
(in
LoopHashLibrary
)
get()
(in
DdGFeaturesAP
)
get()
(in
ThreadSequenceOperationCreatorCAP
)
GraftCDRLoopsProtocol
(in
rosetta.protocols.antibody._protocols_antibody_
)
get()
(in
DdGFeaturesCAP
)
get()
(in
DensityScoringClaimerAP
)
GraftCDRLoopsProtocolAP
(in
rosetta.protocols.antibody._protocols_antibody_
)
get()
(in
DdGFeaturesCreatorAP
)
get()
(in
DensityScoringClaimerCAP
)
GraftCDRLoopsProtocolCAP
(in
rosetta.protocols.antibody._protocols_antibody_
)
get()
(in
DdGFeaturesCreatorCAP
)
get()
(in
FoldandDockClaimerAP
)
GraftedStemOptimizer
(in
rosetta.protocols.antibody._protocols_antibody_
)
get()
(in
FeaturesReporterAP
)
get()
(in
FoldandDockClaimerCAP
)
GraftedStemOptimizerAP
(in
rosetta.protocols.antibody._protocols_antibody_
)
get()
(in
FeaturesReporterCAP
)
get()
(in
MembraneTopologyClaimerAP
)
GraftedStemOptimizerCAP
(in
rosetta.protocols.antibody._protocols_antibody_
)
get()
(in
FeaturesReporterCreatorAP
)
get()
(in
MembraneTopologyClaimerCAP
)
grafting
(in
rosetta.protocols
)
get()
(in
FeaturesReporterCreatorCAP
)
get()
(in
RigidBodyRandomTMHMoverAP
)
GraftMover
(in
rosetta.protocols.antibody_legacy._protocols_antibody_legacy_
)
get()
(in
FeaturesReporterFactoryAP
)
get()
(in
RigidBodyRandomTMHMoverCAP
)
GraftMoverAP
(in
rosetta.protocols.antibody_legacy._protocols_antibody_legacy_
)
get()
(in
FeaturesReporterFactoryCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
GraftMoverBase
(in
rosetta.protocols.grafting._protocols_grafting_
)
get()
(in
GeometricSolvationFeaturesAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
GraftMoverBaseAP
(in
rosetta.protocols.grafting._protocols_grafting_
)
get()
(in
GeometricSolvationFeaturesCAP
)
get()
(in
SingletonBase_T_protocols_jumping_StandardDisulfPairingLibrary_TAP
)
GraftMoverBaseCAP
(in
rosetta.protocols.grafting._protocols_grafting_
)
get()
(in
GeometricSolvationFeaturesCreatorAP
)
get()
(in
SingletonBase_T_protocols_jumping_StandardDisulfPairingLibrary_TCAP
)
GraftMoverCAP
(in
rosetta.protocols.antibody_legacy._protocols_antibody_legacy_
)
get()
(in
GeometricSolvationFeaturesCreatorCAP
)
get()
(in
SingletonBase_T_protocols_jumping_StandardPairingLibrary_TAP
)
GraftOneCDRLoop
(in
rosetta.protocols.antibody._protocols_antibody_
)
get()
(in
HBondFeaturesAP
)
get()
(in
SingletonBase_T_protocols_jumping_StandardPairingLibrary_TCAP
)
GraftOneCDRLoopAP
(in
rosetta.protocols.antibody._protocols_antibody_
)
get()
(in
HBondFeaturesCAP
)
get()
(in
SymmetryClaimerAP
)
GraftOneCDRLoopCAP
(in
rosetta.protocols.antibody._protocols_antibody_
)
get()
(in
HBondFeaturesCreatorAP
)
get()
(in
SymmetryClaimerCAP
)
GraftOneMover
(in
rosetta.protocols.antibody_legacy._protocols_antibody_legacy_
)
get()
(in
HBondFeaturesCreatorCAP
)
get()
(in
TopologyClaimerAP
)
GraftOneMoverAP
(in
rosetta.protocols.antibody_legacy._protocols_antibody_legacy_
)
get()
(in
HBondParameterFeaturesAP
)
get()
(in
TopologyClaimerCAP
)
GraftOneMoverCAP
(in
rosetta.protocols.antibody_legacy._protocols_antibody_legacy_
)
get()
(in
HBondParameterFeaturesCAP
)
get()
(in
BBClaimAP
)
graph
(in
rosetta.core
)
get()
(in
HBondParameterFeaturesCreatorAP
)
get()
(in
BBClaimCAP
)
Graph
(in
rosetta.core.graph._core_graph_
)
get()
(in
HBondParameterFeaturesCreatorCAP
)
get()
(in
CutClaimAP
)
graph
(in
rosetta.utility
)
get()
(in
HelixCapFeaturesAP
)
get()
(in
CutClaimCAP
)
graph()
(in
ResidueType
)
get()
(in
HelixCapFeaturesCAP
)
get()
(in
DofClaimAP
)
GraphAP
(in
rosetta.core.graph._core_graph_
)
get()
(in
HelixCapFeaturesCreatorAP
)
get()
(in
DofClaimCAP
)
GraphCAP
(in
rosetta.core.graph._core_graph_
)
get()
(in
HelixCapFeaturesCreatorCAP
)
get()
(in
JumpClaimAP
)
GreaterThanConstraint
(in
rosetta.basic.database.schema_generator._basic_database_schema_generator_
)
get()
(in
InterfaceFeaturesAP
)
get()
(in
JumpClaimCAP
)
GreaterThanConstraintAP
(in
rosetta.basic.database.schema_generator._basic_database_schema_generator_
)
get()
(in
InterfaceFeaturesCAP
)
get()
(in
LegacyRootClaimAP
)
GreaterThanConstraintCAP
(in
rosetta.basic.database.schema_generator._basic_database_schema_generator_
)
get()
(in
InterfaceFeaturesCreatorAP
)
get()
(in
LegacyRootClaimCAP
)
GreedyKCenter
(in
rosetta.protocols.toolbox._protocols_toolbox_
)
get()
(in
InterfaceFeaturesCreatorCAP
)
get()
(in
SequenceClaimAP
)
GreedyKCenterAP
(in
rosetta.protocols.toolbox._protocols_toolbox_
)
get()
(in
JobDataFeaturesAP
)
get()
(in
SequenceClaimCAP
)
GreedyKCenterCAP
(in
rosetta.protocols.toolbox._protocols_toolbox_
)
get()
(in
JobDataFeaturesCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
GreedyOptMutationMover
(in
rosetta.protocols.design_opt._protocols_design_opt_
)
get()
(in
JobDataFeaturesCreatorAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
GreedyOptMutationMoverAP
(in
rosetta.protocols.design_opt._protocols_design_opt_
)
get()
(in
JobDataFeaturesCreatorCAP
)
get()
(in
SymmetryClaimAP
)
GreedyOptMutationMoverCAP
(in
rosetta.protocols.design_opt._protocols_design_opt_
)
get()
(in
LoopAnchorFeaturesAP
)
get()
(in
SymmetryClaimCAP
)
GreedyOptMutationMoverCreator
(in
rosetta.protocols.design_opt._protocols_design_opt_
)
get()
(in
LoopAnchorFeaturesCAP
)
get()
(in
AbinitioMoverWeightAP
)
GreedyOptMutationMoverCreatorAP
(in
rosetta.protocols.design_opt._protocols_design_opt_
)
get()
(in
LoopAnchorFeaturesCreatorAP
)
get()
(in
AbinitioMoverWeightCAP
)
GreedyOptMutationMoverCreatorCAP
(in
rosetta.protocols.design_opt._protocols_design_opt_
)
get()
(in
LoopAnchorFeaturesCreatorCAP
)
get()
(in
ConstAbinitioMoverWeightAP
)
GreenPacker
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
get()
(in
OrbitalsFeaturesAP
)
get()
(in
ConstAbinitioMoverWeightCAP
)
GreenPackerAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
get()
(in
OrbitalsFeaturesCAP
)
get()
(in
LargeFragWeightAP
)
GreenPackerCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
get()
(in
OrbitalsFeaturesCreatorAP
)
get()
(in
LargeFragWeightCAP
)
grid
(in
rosetta.core
)
get()
(in
OrbitalsFeaturesCreatorCAP
)
get()
(in
SmallFragWeightAP
)
grid()
(in
BumpGrid
)
get()
(in
PairFeaturesAP
)
get()
(in
SmallFragWeightCAP
)
grid()
(in
ActiveSiteGrid
)
get()
(in
PairFeaturesCAP
)
get()
(in
SmoothFragWeightAP
)
grid_atoms()
(in
xyzStripeHash
)
get()
(in
PairFeaturesCreatorAP
)
get()
(in
SmoothFragWeightCAP
)
grid_atoms()
(in
xyzStripeHashWithMeta_T_float_T
)
get()
(in
PairFeaturesCreatorCAP
)
get()
(in
DbTrajectoryReaderAP
)
grid_rotamer_trials()
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
get()
(in
PdbDataFeaturesAP
)
get()
(in
DbTrajectoryReaderCAP
)
grid_rotamer_trials_atr_rep()
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
get()
(in
PdbDataFeaturesCAP
)
get()
(in
DbTrajectoryWriterAP
)
grid_score()
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
get()
(in
PdbDataFeaturesCreatorAP
)
get()
(in
DbTrajectoryWriterCAP
)
grid_score_atr_rep()
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
get()
(in
PdbDataFeaturesCreatorCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
grid_size()
(in
xyzStripeHash
)
get()
(in
PoseCommentsFeaturesAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
grid_size()
(in
xyzStripeHashWithMeta_T_float_T
)
get()
(in
PoseCommentsFeaturesCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
grid_size2()
(in
xyzStripeHash
)
get()
(in
PoseCommentsFeaturesCreatorAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
grid_stripe()
(in
xyzStripeHash
)
get()
(in
PoseCommentsFeaturesCreatorCAP
)
get()
(in
UnfoldedStateEnergyCalculatorJobDistributorAP
)
grid_stripe()
(in
xyzStripeHashWithMeta_T_float_T
)
get()
(in
PoseConformationFeaturesAP
)
get()
(in
UnfoldedStateEnergyCalculatorJobDistributorCAP
)
GridInfo
(in
rosetta.core.scoring.geometric_solvation._core_scoring_geometric_solvation_
)
get()
(in
PoseConformationFeaturesCAP
)
get()
(in
UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributorAP
)
GridInfoAP
(in
rosetta.core.scoring.geometric_solvation._core_scoring_geometric_solvation_
)
get()
(in
PoseConformationFeaturesCreatorAP
)
get()
(in
UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributorCAP
)
GridInfoCAP
(in
rosetta.core.scoring.geometric_solvation._core_scoring_geometric_solvation_
)
get()
(in
PoseConformationFeaturesCreatorCAP
)
get()
(in
UnfoldedStateEnergyCalculatorMoverAP
)
gridlig_active_site_definition()
(in
MatcherTask
)
get()
(in
ProteinBackboneAtomAtomPairFeaturesAP
)
get()
(in
UnfoldedStateEnergyCalculatorMoverCAP
)
gridlig_file_name()
(in
MatcherTask
)
get()
(in
ProteinBackboneAtomAtomPairFeaturesCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
GridSearchIterator
(in
rosetta.protocols.scoring.methods.pcs._protocols_scoring_methods_pcs_
)
get()
(in
ProteinBackboneAtomAtomPairFeaturesCreatorAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
GridSearchIterator
(in
rosetta.protocols.scoring.methods.pcs2._protocols_scoring_methods_pcs2_
)
get()
(in
ProteinBackboneAtomAtomPairFeaturesCreatorCAP
)
get()
(in
VIP_MoverAP
)
GridSearchIterator_Ts1
(in
rosetta.protocols.scoring.methods.pcsTs1._protocols_scoring_methods_pcsTs1_
)
get()
(in
ProteinBackboneTorsionAngleFeaturesAP
)
get()
(in
VIP_MoverCAP
)
GridSearchIterator_Ts1AP
(in
rosetta.protocols.scoring.methods.pcsTs1._protocols_scoring_methods_pcsTs1_
)
get()
(in
ProteinBackboneTorsionAngleFeaturesCAP
)
get()
(in
VIP_ReportAP
)
GridSearchIterator_Ts1CAP
(in
rosetta.protocols.scoring.methods.pcsTs1._protocols_scoring_methods_pcsTs1_
)
get()
(in
ProteinBackboneTorsionAngleFeaturesCreatorAP
)
get()
(in
VIP_ReportCAP
)
GridSearchIterator_Ts2
(in
rosetta.protocols.scoring.methods.pcsTs2._protocols_scoring_methods_pcsTs2_
)
get()
(in
ProteinBackboneTorsionAngleFeaturesCreatorCAP
)
get()
(in
DatabaseEntryWorkUnitAP
)
GridSearchIterator_Ts2AP
(in
rosetta.protocols.scoring.methods.pcsTs2._protocols_scoring_methods_pcsTs2_
)
get()
(in
ProteinBondGeometryFeaturesAP
)
get()
(in
DatabaseEntryWorkUnitCAP
)
GridSearchIterator_Ts2CAP
(in
rosetta.protocols.scoring.methods.pcsTs2._protocols_scoring_methods_pcsTs2_
)
get()
(in
ProteinBondGeometryFeaturesCAP
)
get()
(in
MPI_WorkUnitManagerAP
)
GridSearchIterator_Ts3
(in
rosetta.protocols.scoring.methods.pcsTs3._protocols_scoring_methods_pcsTs3_
)
get()
(in
ProteinBondGeometryFeaturesCreatorAP
)
get()
(in
MPI_WorkUnitManagerCAP
)
GridSearchIterator_Ts3AP
(in
rosetta.protocols.scoring.methods.pcsTs3._protocols_scoring_methods_pcsTs3_
)
get()
(in
ProteinBondGeometryFeaturesCreatorCAP
)
get()
(in
MPI_WorkUnitManager_SlaveAP
)
GridSearchIterator_Ts3CAP
(in
rosetta.protocols.scoring.methods.pcsTs3._protocols_scoring_methods_pcsTs3_
)
get()
(in
ProteinRMSDFeaturesAP
)
get()
(in
MPI_WorkUnitManager_SlaveCAP
)
GridSearchIterator_Ts4
(in
rosetta.protocols.scoring.methods.pcsTs4._protocols_scoring_methods_pcsTs4_
)
get()
(in
ProteinRMSDFeaturesCAP
)
get()
(in
MoverListAP
)
GridSearchIterator_Ts4AP
(in
rosetta.protocols.scoring.methods.pcsTs4._protocols_scoring_methods_pcsTs4_
)
get()
(in
ProteinRMSDFeaturesCreatorAP
)
get()
(in
MoverListCAP
)
GridSearchIterator_Ts4CAP
(in
rosetta.protocols.scoring.methods.pcsTs4._protocols_scoring_methods_pcsTs4_
)
get()
(in
ProteinRMSDFeaturesCreatorCAP
)
get()
(in
SilentStructStoreAP
)
GridSearchIteratorAP
(in
rosetta.protocols.scoring.methods.pcs._protocols_scoring_methods_pcs_
)
get()
(in
ProteinRMSDNoSuperpositionFeaturesAP
)
get()
(in
SilentStructStoreCAP
)
GridSearchIteratorAP
(in
rosetta.protocols.scoring.methods.pcs2._protocols_scoring_methods_pcs2_
)
get()
(in
ProteinRMSDNoSuperpositionFeaturesCAP
)
get()
(in
WorkUnitBaseAP
)
GridSearchIteratorCA
(in
rosetta.protocols.scoring.methods.pcs2._protocols_scoring_methods_pcs2_
)
get()
(in
ProteinRMSDNoSuperpositionFeaturesCreatorAP
)
get()
(in
WorkUnitBaseCAP
)
GridSearchIteratorCAAP
(in
rosetta.protocols.scoring.methods.pcs2._protocols_scoring_methods_pcs2_
)
get()
(in
ProteinRMSDNoSuperpositionFeaturesCreatorCAP
)
get()
(in
WorkUnitListAP
)
GridSearchIteratorCACAP
(in
rosetta.protocols.scoring.methods.pcs2._protocols_scoring_methods_pcs2_
)
get()
(in
ProteinResidueConformationFeaturesAP
)
get()
(in
WorkUnitListCAP
)
GridSearchIteratorCAP
(in
rosetta.protocols.scoring.methods.pcs._protocols_scoring_methods_pcs_
)
get()
(in
ProteinResidueConformationFeaturesCAP
)
get()
(in
WorkUnitManagerAP
)
GridSearchIteratorCAP
(in
rosetta.protocols.scoring.methods.pcs2._protocols_scoring_methods_pcs2_
)
get()
(in
ProteinResidueConformationFeaturesCreatorAP
)
get()
(in
WorkUnitManagerCAP
)
group()
(in
ResidueKinWriter
)
get()
(in
ProteinResidueConformationFeaturesCreatorCAP
)
get()
(in
WorkUnitQueueAP
)
group()
(in
ResidueKinemageWriter
)
get()
(in
ProteinSilentReportAP
)
get()
(in
WorkUnitQueueCAP
)
group()
(in
WriteUpstreamHitKinemage
)
get()
(in
ProteinSilentReportCAP
)
get()
(in
WorkUnitQueue_SwappedAP
)
group1_resstring()
(in
InterGroupInterfaceByVectorSelector
)
get()
(in
ProtocolFeaturesAP
)
get()
(in
WorkUnitQueue_SwappedCAP
)
group1_selector()
(in
InterGroupInterfaceByVectorSelector
)
get()
(in
ProtocolFeaturesCAP
)
get()
(in
WorkUnit_MoverWrapperAP
)
group1_set()
(in
InterGroupInterfaceByVectorSelector
)
get()
(in
RadiusOfGyrationFeaturesAP
)
get()
(in
WorkUnit_MoverWrapperCAP
)
group2_resstring()
(in
InterGroupInterfaceByVectorSelector
)
get()
(in
RadiusOfGyrationFeaturesCAP
)
get()
(in
WorkUnit_SilentStructStoreAP
)
group2_selector()
(in
InterGroupInterfaceByVectorSelector
)
get()
(in
RadiusOfGyrationFeaturesCreatorAP
)
get()
(in
WorkUnit_SilentStructStoreCAP
)
group2_set()
(in
InterGroupInterfaceByVectorSelector
)
get()
(in
RadiusOfGyrationFeaturesCreatorCAP
)
get()
(in
WorkUnit_WaitAP
)
group_fragment_store_int()
(in
StructureStoreManager
)
get()
(in
ReportAP
)
get()
(in
WorkUnit_WaitCAP
)
group_id()
(in
ChainGroupDiscriminator
)
get()
(in
ReportCAP
)
get()
(in
find_SilentStructOPsAP
)
group_id()
(in
GroupDiscriminator
)
get()
(in
ReportToDBAP
)
get()
(in
find_SilentStructOPsCAP
)
group_id()
(in
UserDefinedGroupDiscriminator
)
get()
(in
ReportToDBCAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TAP
)
group_size()
(in
Cluster
)
get()
(in
ReportToDBCreatorAP
)
get()
(in
SingletonBase_T_core_chemical_ChemicalManager_TCAP
)
GroupDiscriminator
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
get()
(in
ReportToDBCreatorCAP
)
get()
(in
WUQueueAP
)
GroupDiscriminatorAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
get()
(in
ResidueBurialFeaturesAP
)
get()
(in
WUQueueCAP
)
GroupDiscriminatorCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
get()
(in
ResidueBurialFeaturesCAP
)
get()
(in
WorkUnitAP
)
GroupElec
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
get()
(in
ResidueBurialFeaturesCreatorAP
)
get()
(in
WorkUnitCAP
)
GroupElecAP
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
get()
(in
ResidueBurialFeaturesCreatorCAP
)
get()
(in
WorkUnit_ElScriptsAP
)
GroupElecCAP
(in
rosetta.core.scoring.elec._core_scoring_elec_
)
get()
(in
ResidueConformationFeaturesAP
)
get()
(in
WorkUnit_ElScriptsCAP
)
grouper_ds_rmsd()
(in
MatcherTask
)
get()
(in
ResidueConformationFeaturesCAP
)
get()
(in
WorkUnit_WaitAP
)
grouper_name()
(in
MatcherTask
)
get()
(in
ResidueConformationFeaturesCreatorAP
)
get()
(in
WorkUnit_WaitCAP
)
groups()
(in
InterGroupNeighborsCalculator
)
get()
(in
ResidueConformationFeaturesCreatorCAP
)
get()
(in
CSI_SequenceAP
)
grow()
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
get()
(in
ResidueFeaturesAP
)
get()
(in
CSI_SequenceCAP
)
grow_all_loops()
(in
Loops
)
get()
(in
ResidueFeaturesCAP
)
get()
(in
Inline_File_ProviderAP
)
grow_left_r()
(in
rosetta.protocols.forge.methods._protocols_forge_methods_
)
get()
(in
ResidueFeaturesCreatorAP
)
get()
(in
Inline_File_ProviderCAP
)
grow_loop()
(in
Loops
)
get()
(in
ResidueFeaturesCreatorCAP
)
get()
(in
Inline_File_Provider_HookAP
)
grow_loop_away_from_sheets()
(in
Loops
)
get()
(in
ResidueGridScoresFeaturesAP
)
get()
(in
Inline_File_Provider_HookCAP
)
grow_right_r()
(in
rosetta.protocols.forge.methods._protocols_forge_methods_
)
get()
(in
ResidueGridScoresFeaturesCAP
)
get()
(in
LexicographicalIteratorAP
)
GrowLeft
(in
rosetta.protocols.forge.build._protocols_forge_build_'
)
get()
(in
ResidueGridScoresFeaturesCreatorAP
)
get()
(in
LexicographicalIteratorCAP
)
GrowLeftAP
(in
rosetta.protocols.forge.build._protocols_forge_build_'
)
get()
(in
ResidueGridScoresFeaturesCreatorCAP
)
get()
(in
ShowAP
)
GrowLeftCAP
(in
rosetta.protocols.forge.build._protocols_forge_build_'
)
get()
(in
ResidueScoresFeaturesAP
)
get()
(in
ShowCAP
)
GrowLigand
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
get()
(in
ResidueScoresFeaturesCAP
)
get()
(in
SimulateMPIAP
)
GrowLigandAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
get()
(in
ResidueScoresFeaturesCreatorAP
)
get()
(in
SimulateMPICAP
)
GrowLigandCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
get()
(in
ResidueScoresFeaturesCreatorCAP
)
get()
(in
SimulateMPIDataAP
)
GrowLigandCreator
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
get()
(in
ResidueSecondaryStructureFeaturesAP
)
get()
(in
SimulateMPIDataCAP
)
GrowLigandCreatorAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
get()
(in
ResidueSecondaryStructureFeaturesCAP
)
get()
(in
SimulateMPIMessageAP
)
GrowLigandCreatorCAP
(in
rosetta.protocols.ligand_docking._protocols_ligand_docking_
)
get()
(in
ResidueSecondaryStructureFeaturesCreatorAP
)
get()
(in
SimulateMPIMessageCAP
)
GrowPeptides
(in
rosetta.protocols.seeded_abinitio._protocols_seeded_abinitio_
)
get()
(in
ResidueSecondaryStructureFeaturesCreatorCAP
)
get()
(in
SingletonBase_T_utility_Inline_File_Provider_TAP
)
GrowPeptidesAP
(in
rosetta.protocols.seeded_abinitio._protocols_seeded_abinitio_
)
get()
(in
ResidueTotalScoresFeaturesAP
)
get()
(in
SingletonBase_T_utility_Inline_File_Provider_TCAP
)
GrowPeptidesCAP
(in
rosetta.protocols.seeded_abinitio._protocols_seeded_abinitio_
)
get()
(in
ResidueTotalScoresFeaturesCAP
)
get()
(in
heapAP
)
GrowPeptidesCreator
(in
rosetta.protocols.seeded_abinitio._protocols_seeded_abinitio_
)
get()
(in
ResidueTotalScoresFeaturesCreatorAP
)
get()
(in
heapCAP
)
GrowPeptidesCreatorAP
(in
rosetta.protocols.seeded_abinitio._protocols_seeded_abinitio_
)
get()
(in
ResidueTotalScoresFeaturesCreatorCAP
)
get()
(in
history_queue_structAP
)
GrowPeptidesCreatorCAP
(in
rosetta.protocols.seeded_abinitio._protocols_seeded_abinitio_
)
get()
(in
ResidueTypesFeaturesAP
)
get()
(in
history_queue_structCAP
)
GrowRight
(in
rosetta.protocols.forge.build._protocols_forge_build_'
)
get()
(in
ResidueTypesFeaturesCAP
)
get()
(in
recent_history_queueAP
)
GrowRightAP
(in
rosetta.protocols.forge.build._protocols_forge_build_'
)
get()
(in
ResidueTypesFeaturesCreatorAP
)
get()
(in
recent_history_queueCAP
)
GrowRightCAP
(in
rosetta.protocols.forge.build._protocols_forge_build_'
)
get()
(in
ResidueTypesFeaturesCreatorCAP
)
get()
(in
subset_mappingAP
)
grp_cpfxn()
(in
EnergyMethodOptions
)
get()
(in
RotamerBoltzmannWeightFeaturesAP
)
get()
(in
subset_mappingCAP
)
grpelec_context_dependent()
(in
EnergyMethodOptions
)
get()
(in
RotamerBoltzmannWeightFeaturesCAP
)
get()
(in
utility_vector1_boolAP
)
grpelec_fade_hbond()
(in
EnergyMethodOptions
)
get()
(in
RotamerBoltzmannWeightFeaturesCreatorAP
)
get()
(in
utility_vector1_boolCAP
)
grpelec_fade_param1()
(in
EnergyMethodOptions
)
get()
(in
RotamerBoltzmannWeightFeaturesCreatorCAP
)
get()
(in
vector0_T_float_std_allocator_T_float_T__TAP
)
grpelec_fade_param2()
(in
EnergyMethodOptions
)
get()
(in
RotamerFeaturesAP
)
get()
(in
vector0_T_float_std_allocator_T_float_T__TCAP
)
grpelec_fade_type()
(in
EnergyMethodOptions
)
get()
(in
RotamerFeaturesCAP
)
get()
(in
vector0_T_int_std_allocator_T_int_T__TAP
)
GT_Expression
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
get()
(in
RotamerFeaturesCreatorAP
)
get()
(in
vector0_T_int_std_allocator_T_int_T__TCAP
)
GT_ExpressionAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
get()
(in
RotamerFeaturesCreatorCAP
)
get()
(in
vector0_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T_std_allocator_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T__T__TAP
)
GT_ExpressionCAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
get()
(in
RotamerRecoveryFeaturesAP
)
get()
(in
vector0_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T_std_allocator_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T__T__TCAP
)
GTE_Expression
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
get()
(in
RotamerRecoveryFeaturesCAP
)
get()
(in
vector0_T_utility_vector0_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T__std_allocator_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T__T__T_std_allocator_T_utility_vector0_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T__std_allocator_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T__T__T__T__TAP
)
GTE_ExpressionAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
get()
(in
RotamerRecoveryFeaturesCreatorAP
)
get()
(in
vector0_T_utility_vector0_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T__std_allocator_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T__T__T_std_allocator_T_utility_vector0_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T__std_allocator_T_std_list_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__std_allocator_T_boost_shared_ptr_T_utility_SimulateMPIMessage_T__T__T__T__T__T__TCAP
)
GTE_ExpressionCAP
(in
rosetta.numeric.expression_parser._numeric_expression_parser_
)
get()
(in
RotamerRecoveryFeaturesCreatorCAP
)
get()
(in
vector1_T_utility_history_queue_struct_std_allocator_T_utility_history_queue_struct_T__TAP
)
GuardedLoopsFromFile
(in
rosetta.protocols.loops._protocols_loops_
)
get()
(in
RuntimeFeaturesAP
)
get()
(in
vector1_T_utility_history_queue_struct_std_allocator_T_utility_history_queue_struct_T__TCAP
)
GuardedLoopsFromFileAP
(in
rosetta.protocols.loops._protocols_loops_
)
get()
(in
RuntimeFeaturesCAP
)
get()
(in
vectorL_IndexSelector_T_false_TAP
)
GuardedLoopsFromFileCAP
(in
rosetta.protocols.loops._protocols_loops_
)
get()
(in
RuntimeFeaturesCreatorAP
)
get()
(in
vectorL_IndexSelector_T_false_TCAP
)
guess_rbsegs_from_pose()
(in
rosetta.protocols.rbsegment_relax._protocols_rbsegment_relax_
)
get()
(in
RuntimeFeaturesCreatorCAP
)
get()
(in
vectorL_IndexSelector_T_true_TAP
)
GunnCost
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
get()
(in
SaltBridgeFeaturesAP
)
get()
(in
vectorL_IndexSelector_T_true_TCAP
)
GunnCost
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
get()
(in
SaltBridgeFeaturesCAP
)
get()
(in
vectorL_ZeroSelector_T_false_TAP
)
GunnCostAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
get()
(in
SaltBridgeFeaturesCreatorAP
)
get()
(in
vectorL_ZeroSelector_T_false_TCAP
)
GunnCostAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
get()
(in
SaltBridgeFeaturesCreatorCAP
)
get()
(in
EXCN_BadInputAP
)
GunnCostCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
get()
(in
ScoreFunctionFeaturesAP
)
get()
(in
EXCN_BadInputCAP
)
GunnCostCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
get()
(in
ScoreFunctionFeaturesCAP
)
get()
(in
EXCN_BaseAP
)
GunnCostScore
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
get()
(in
ScoreFunctionFeaturesCreatorAP
)
get()
(in
EXCN_BaseCAP
)
GunnCostScoreAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
get()
(in
ScoreFunctionFeaturesCreatorCAP
)
get()
(in
EXCN_ExceptionAP
)
GunnCostScoreCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
get()
(in
ScoreTypeFeaturesAP
)
get()
(in
EXCN_ExceptionCAP
)
GunnTuple
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
get()
(in
ScoreTypeFeaturesCAP
)
get()
(in
EXCN_FileNotFoundAP
)
GunnTuple
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
get()
(in
ScoreTypeFeaturesCreatorAP
)
get()
(in
EXCN_FileNotFoundCAP
)
GunnTupleAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
get()
(in
ScoreTypeFeaturesCreatorCAP
)
get()
(in
EXCN_IOAP
)
GunnTupleAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
get()
(in
ScreeningFeaturesAP
)
get()
(in
EXCN_IOCAP
)
GunnTupleCAP
(in
rosetta.protocols.frag_picker.scores._protocols_frag_picker_scores_
)
get()
(in
ScreeningFeaturesCAP
)
get()
(in
EXCN_JD2FailureAP
)
GunnTupleCAP
(in
rosetta.protocols.simple_moves._protocols_simple_moves_
)
get()
(in
ScreeningFeaturesCreatorAP
)
get()
(in
EXCN_JD2FailureCAP
)
gunzip()
(in
rosetta.utility.file._utility_file_
)
get()
(in
ScreeningFeaturesCreatorCAP
)
get()
(in
EXCN_KeyErrorAP
)
gzip()
(in
rosetta.core.io.silent._core_io_silent_
)
get()
(in
SecondaryStructureSegmentAP
)
get()
(in
EXCN_KeyErrorCAP
)
gzip()
(in
rosetta.utility.file._utility_file_
)
get()
(in
SecondaryStructureSegmentCAP
)
get()
(in
EXCN_Msg_ExceptionAP
)
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